SMED30030965

Overview


Name	SMED30030965
Smed ID	SMED30030965
Length (bp)	303

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30030965 (SMED30030965) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30030965 (SMED30030965) in cells (dots) of each of the 12 neoblast clusters.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30030965

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
epidermis	SMED30030965	SMESG000050000.1 SMESG000005243.1 SMESG000005237.1	dd_Smed_v4_11192_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
dorsal region of the epidermis	SMED30030965	SMESG000050000.1 SMESG000005243.1 SMESG000005237.1	dd_Smed_v4_11192_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
ciliated epithelial cell	SMED30030965	SMESG000050000.1 SMESG000005243.1 SMESG000005237.1	dd_Smed_v4_11192_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Alignments

SMED30030965 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.018776:4498..6721 +	1198
v31.018888:8124..9588 -	1183
v31.018888:9670..10624 -	1132
v31.018776:3460..4416 +	1114

Homology

[Close]

BLAST of SMED30030965 vs. Ensembl Zebrafish
Match: nrcama (neuronal cell adhesion molecule a [Source:ZFIN;Acc:ZDB-GENE-041210-235])

HSP 1 Score: 49.6766 bits (117), Expect = 5.804e-8
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSS--KTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFIWVQ--NTNNECVL 237
            PY++Y +N+R+ NGHG   PSS  +  QT + + GP TNV + N +  S  L + W PP   NG +  Y +  Q  NT  E  L
Sbjct:  882 PYSHYRLNIRAFNGHG-DGPSSTDQQFQTPEGVPGPPTNVNIRNLNLDS--LLVEWTPPLEDNGHLTGYLLKYQPINTTEEAGL 962

[Close]

BLAST of SMED30030965 vs. Ensembl Zebrafish
Match: nrcama (neuronal cell adhesion molecule a [Source:ZFIN;Acc:ZDB-GENE-041210-235])

HSP 1 Score: 49.6766 bits (117), Expect = 5.975e-8
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSS--KTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFIWVQ--NTNNECVL 237
            PY++Y +N+R+ NGHG   PSS  +  QT + + GP TNV + N +  S  L + W PP   NG +  Y +  Q  NT  E  L
Sbjct:  902 PYSHYRLNIRAFNGHG-DGPSSTDQQFQTPEGVPGPPTNVNIRNLNLDS--LLVEWTPPLEDNGHLTGYLLKYQPINTTEEAGL 982

[Close]

BLAST of SMED30030965 vs. Ensembl Xenopus
Match: rai14 (retinoic acid induced 14 [Source:Xenbase;Acc:XB-GENE-979322])

HSP 1 Score: 44.669 bits (104), Expect = 4.973e-6
Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSS-KTIQTNQYI-SGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISM 282
            PYT+Y +NVR  NG G   PS+ K  +T + + S P+    V  +  S  L++ W PP   NG +  Y +  Q+ N    L+  +  T   N+ S+
Sbjct:  891 PYTSYILNVRVFNGKGEGPPSTDKYFETPEGVPSAPLKLDVVERTIES--LTLMWKPPAHPNGVLTHYTLIFQSINATHELSPPVEITVPTNETSL 984

[Close]

BLAST of SMED30030965 vs. Ensembl Xenopus
Match: rai14 (retinoic acid induced 14 [Source:Xenbase;Acc:XB-GENE-979322])

HSP 1 Score: 44.669 bits (104), Expect = 4.985e-6
Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSS-KTIQTNQYI-SGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISM 282
            PYT+Y +NVR  NG G   PS+ K  +T + + S P+    V  +  S  L++ W PP   NG +  Y +  Q+ N    L+  +  T   N+ S+
Sbjct:  877 PYTSYILNVRVFNGKGEGPPSTDKYFETPEGVPSAPLKLDVVERTIES--LTLMWKPPAHPNGVLTHYTLIFQSINATHELSPPVEITVPTNETSL 970

[Close]

BLAST of SMED30030965 vs. Ensembl Xenopus
Match: rai14 (retinoic acid induced 14 [Source:Xenbase;Acc:XB-GENE-979322])

HSP 1 Score: 44.669 bits (104), Expect = 5.138e-6
Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSS-KTIQTNQYI-SGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISM 282
            PYT+Y +NVR  NG G   PS+ K  +T + + S P+    V  +  S  L++ W PP   NG +  Y +  Q+ N    L+  +  T   N+ S+
Sbjct:  895 PYTSYILNVRVFNGKGEGPPSTDKYFETPEGVPSAPLKLDVVERTIES--LTLMWKPPAHPNGVLTHYTLIFQSINATHELSPPVEITVPTNETSL 988

[Close]

BLAST of SMED30030965 vs. Ensembl Xenopus
Match: rai14 (retinoic acid induced 14 [Source:Xenbase;Acc:XB-GENE-979322])

HSP 1 Score: 44.669 bits (104), Expect = 5.335e-6
Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSS-KTIQTNQYI-SGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISM 282
            PYT+Y +NVR  NG G   PS+ K  +T + + S P+    V  +  S  L++ W PP   NG +  Y +  Q+ N    L+  +  T   N+ S+
Sbjct:  865 PYTSYILNVRVFNGKGEGPPSTDKYFETPEGVPSAPLKLDVVERTIES--LTLMWKPPAHPNGVLTHYTLIFQSINATHELSPPVEITVPTNETSL 958

[Close]

BLAST of SMED30030965 vs. Ensembl Xenopus
Match: rai14 (retinoic acid induced 14 [Source:Xenbase;Acc:XB-GENE-979322])

HSP 1 Score: 44.669 bits (104), Expect = 5.338e-6
Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSS-KTIQTNQYI-SGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISM 282
            PYT+Y +NVR  NG G   PS+ K  +T + + S P+    V  +  S  L++ W PP   NG +  Y +  Q+ N    L+  +  T   N+ S+
Sbjct:  891 PYTSYILNVRVFNGKGEGPPSTDKYFETPEGVPSAPLKLDVVERTIES--LTLMWKPPAHPNGVLTHYTLIFQSINATHELSPPVEITVPTNETSL 984

[Close]

BLAST of SMED30030965 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005050.1 (pep scaffold:Pmarinus_7.0:GL481744:10549:20708:-1 gene:ENSPMAG00000004559.1 transcript:ENSPMAT00000005050.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 43.5134 bits (101), Expect = 1.589e-6
Identity = 26/78 (33.33%), Postives = 42/78 (53.85%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTN--QYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNN 225
            P++ Y + V++ NG G   P+S  ++    + + G VTN+ V    F S  +++TW PP   NG +  Y +  QN NN
Sbjct:   77 PFSLYELEVKAFNGKG-DGPASHALRVEMPEGVPGQVTNLRVPEKDFDS--ITLTWDPPAHPNGILTGYTVQYQNINN 151

[Close]

BLAST of SMED30030965 vs. Ensembl Medaka
Match: ENSORLT00000004171.2 (neuronal cell adhesion molecule [Source:NCBI gene;Acc:101171409])

HSP 1 Score: 44.2838 bits (103), Expect = 3.824e-6
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPS-SKTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNN------ECVLTMSLNCT 258
            P+++Y+  V+  NG G   PS +K  +T + + GP T++ V N +  S  L++ W+PP   NG I  Y +  Q  NN      E VL ++ N T
Sbjct:  907 PFSDYSFYVKVFNGRGEGPPSITKHFRTPEGVPGPPTSLVVSNPNLDS--LTLKWSPPYDPNGHITGYTLKYQPVNNSNELGEEEVLALAANET 998

[Close]

BLAST of SMED30030965 vs. Ensembl Medaka
Match: ENSORLT00000029347.1 (neuronal cell adhesion molecule [Source:NCBI gene;Acc:101171409])

HSP 1 Score: 44.2838 bits (103), Expect = 3.951e-6
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPS-SKTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNN------ECVLTMSLNCT 258
            P+++Y+  V+  NG G   PS +K  +T + + GP T++ V N +  S  L++ W+PP   NG I  Y +  Q  NN      E VL ++ N T
Sbjct:  903 PFSDYSFYVKVFNGRGEGPPSITKHFRTPEGVPGPPTSLVVSNPNLDS--LTLKWSPPYDPNGHITGYTLKYQPVNNSNELGEEEVLALAANET 994

[Close]

BLAST of SMED30030965 vs. Ensembl Medaka
Match: ENSORLT00000038551.1 (neuronal cell adhesion molecule [Source:NCBI gene;Acc:101171409])

HSP 1 Score: 44.2838 bits (103), Expect = 4.029e-6
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPS-SKTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNN------ECVLTMSLNCT 258
            P+++Y+  V+  NG G   PS +K  +T + + GP T++ V N +  S  L++ W+PP   NG I  Y +  Q  NN      E VL ++ N T
Sbjct:  907 PFSDYSFYVKVFNGRGEGPPSITKHFRTPEGVPGPPTSLVVSNPNLDS--LTLKWSPPYDPNGHITGYTLKYQPVNNSNELGEEEVLALAANET 998

[Close]

BLAST of SMED30030965 vs. Ensembl Medaka
Match: ENSORLT00000040962.1 (neuronal cell adhesion molecule [Source:NCBI gene;Acc:101171409])

HSP 1 Score: 44.2838 bits (103), Expect = 4.029e-6
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPS-SKTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNN------ECVLTMSLNCT 258
            P+++Y+  V+  NG G   PS +K  +T + + GP T++ V N +  S  L++ W+PP   NG I  Y +  Q  NN      E VL ++ N T
Sbjct:  907 PFSDYSFYVKVFNGRGEGPPSITKHFRTPEGVPGPPTSLVVSNPNLDS--LTLKWSPPYDPNGHITGYTLKYQPVNNSNELGEEEVLALAANET 998

[Close]

BLAST of SMED30030965 vs. Ensembl Medaka
Match: ENSORLT00000039155.1 (neuronal cell adhesion molecule [Source:NCBI gene;Acc:101171409])

HSP 1 Score: 44.2838 bits (103), Expect = 4.029e-6
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPS-SKTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNN------ECVLTMSLNCT 258
            P+++Y+  V+  NG G   PS +K  +T + + GP T++ V N +  S  L++ W+PP   NG I  Y +  Q  NN      E VL ++ N T
Sbjct:  907 PFSDYSFYVKVFNGRGEGPPSITKHFRTPEGVPGPPTSLVVSNPNLDS--LTLKWSPPYDPNGHITGYTLKYQPVNNSNELGEEEVLALAANET 998

[Close]

BLAST of SMED30030965 vs. Planmine SMEST
Match: SMESG000005237.1 (SMESG000005237.1)

HSP 1 Score: 180.644 bits (457), Expect = 3.139e-55
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1

Query:    4 YTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            YTNYTIN+RSLNG+GW N SSKTI+TNQYISGPVTNVTVNSSFPSFPLSITWAPPGV NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S   MP+NST+
Sbjct:  370 YTNYTINIRSLNGYGWGNLSSKTIKTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVTNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNLSVPRMPENSTD 471

HSP 2 Score: 168.318 bits (425), Expect = 1.379e-50
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS 279
            PYTNYTIN+RSLNG+GW N SSKTIQT+QYISGPVTN++V SSFPSFPLSI W+PP V+NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S
Sbjct:  499 PYTNYTINIRSLNGYGWGNSSSKTIQTDQYISGPVTNLSVTSSFPSFPLSIIWSPPVVSNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNVS 591

HSP 3 Score: 149.828 bits (377), Expect = 1.027e-43
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISMPDNSTNA 303
            P T+Y +   +LN  GW +  S ++ T+Q+ISGPVTN++V S FP  PLSITWAPPGV NGEIVQY IWVQ TNNECVLTMSLNCTDCKNKISMPDNSTNA
Sbjct:  242 PATSYLVIATALNEFGWGDAQSISLLTDQFISGPVTNLSVTSLFPLSPLSITWAPPGVTNGEIVQYLIWVQKTNNECVLTMSLNCTDCKNKISMPDNSTNA 342

[Close]

BLAST of SMED30030965 vs. Planmine SMEST
Match: SMESG000005237.1 (SMESG000005237.1)

HSP 1 Score: 181.415 bits (459), Expect = 2.927e-54
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1

Query:    4 YTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            YTNYTIN+RSLNG+GW N SSKTI+TNQYISGPVTNVTVNSSFPSFPLSITWAPPGV NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S   MP+NST+
Sbjct:  370 YTNYTINIRSLNGYGWGNLSSKTIKTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVTNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNLSVPRMPENSTD 471

HSP 2 Score: 172.17 bits (435), Expect = 4.099e-51
Identity = 83/103 (80.58%), Postives = 94/103 (91.26%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            PYTNYTIN+RSLNG+GW N SSKTIQT+QYISGPVTN++V SSFPSFPLSI W+PP V+NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S   +P+NST+
Sbjct:  499 PYTNYTINIRSLNGYGWGNSSSKTIQTDQYISGPVTNLSVTSSFPSFPLSIIWSPPVVSNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNLSVPRIPENSTD 601

HSP 3 Score: 168.703 bits (426), Expect = 7.236e-50
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            PYTNYTIN+RSLNG+GW N SSKTIQT+QY SG + N++V SSFPSFPLSITW PPGVANGEIVQY IWVQNTNNECVLT+S NCTDCKN +S   MPDNST+
Sbjct:  629 PYTNYTINIRSLNGYGWGNSSSKTIQTDQYTSGSIMNLSVASSFPSFPLSITWEPPGVANGEIVQYLIWVQNTNNECVLTVSFNCTDCKNNLSVPAMPDNSTD 731

HSP 4 Score: 150.214 bits (378), Expect = 2.184e-43
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISMPDNSTNA 303
            P T+Y +   +LN  GW +  S ++ T+Q+ISGPVTN++V S FP  PLSITWAPPGV NGEIVQY IWVQ TNNECVLTMSLNCTDCKNKISMPDNSTNA
Sbjct:  242 PATSYLVIATALNEFGWGDAQSISLLTDQFISGPVTNLSVTSLFPLSPLSITWAPPGVTNGEIVQYLIWVQKTNNECVLTMSLNCTDCKNKISMPDNSTNA 342

HSP 5 Score: 82.0333 bits (201), Expect = 1.949e-19
Identity = 47/69 (68.12%), Postives = 50/69 (72.46%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFI 204
            PYTNYTINVRSLNG+GW N SSKTIQTNQYISGPV+N    NSSF S   S  W  P  ANG I+ Y I
Sbjct:  759 PYTNYTINVRSLNGYGWGNSSSKTIQTNQYISGPVSNFNCYNSSFNSIFCS--WGFPSKANGVILSYTI 825

[Close]

BLAST of SMED30030965 vs. Planmine SMEST
Match: SMESG000005237.1 (SMESG000005237.1)

HSP 1 Score: 181.415 bits (459), Expect = 3.020e-54
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1

Query:    4 YTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            YTNYTIN+RSLNG+GW N SSKTI+TNQYISGPVTNVTVNSSFPSFPLSITWAPPGV NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S   MP+NST+
Sbjct:  370 YTNYTINIRSLNGYGWGNLSSKTIKTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVTNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNLSVPRMPENSTD 471

HSP 2 Score: 171.785 bits (434), Expect = 6.803e-51
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            PYTNYTINVRSLNG+GW N SSKTIQT+QYISGPVTN++V SSFPSFPLSI W+PP V+NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S   +P+NST+
Sbjct:  629 PYTNYTINVRSLNGYGWGNLSSKTIQTSQYISGPVTNLSVTSSFPSFPLSIIWSPPVVSNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNLSVPRIPENSTD 731

HSP 3 Score: 170.629 bits (431), Expect = 1.537e-50
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTNA 303
            PYTNYTIN+RSLNG+GW N SSKTIQT+QY SG + N++V SSFPSFPLSITW PPGVANGEIVQY IWVQ TNNECVLTMSLNCTDCKN +S   MPDNST++
Sbjct:  499 PYTNYTINIRSLNGYGWGNSSSKTIQTDQYTSGSIMNLSVASSFPSFPLSITWEPPGVANGEIVQYLIWVQKTNNECVLTMSLNCTDCKNNLSVPAMPDNSTDS 602

HSP 4 Score: 168.703 bits (426), Expect = 7.540e-50
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            PYTNYTIN+RSLNG+GW N SSKTIQT+QY SG + N++V SSFPSFPLSITW PPGVANGEIVQY IWVQNTNNECVLT+S NCTDCKN +S   MPDNST+
Sbjct:  759 PYTNYTINIRSLNGYGWGNSSSKTIQTDQYTSGSIMNLSVASSFPSFPLSITWEPPGVANGEIVQYLIWVQNTNNECVLTVSFNCTDCKNNLSVPAMPDNSTD 861

HSP 5 Score: 150.214 bits (378), Expect = 2.366e-43
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISMPDNSTNA 303
            P T+Y +   +LN  GW +  S ++ T+Q+ISGPVTN++V S FP  PLSITWAPPGV NGEIVQY IWVQ TNNECVLTMSLNCTDCKNKISMPDNSTNA
Sbjct:  242 PATSYLVIATALNEFGWGDAQSISLLTDQFISGPVTNLSVTSLFPLSPLSITWAPPGVTNGEIVQYLIWVQKTNNECVLTMSLNCTDCKNKISMPDNSTNA 342

HSP 6 Score: 82.0333 bits (201), Expect = 1.917e-19
Identity = 47/69 (68.12%), Postives = 50/69 (72.46%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFI 204
            PYTNYTINVRSLNG+GW N SSKTIQTNQYISGPV+N    NSSF S   S  W  P  ANG I+ Y I
Sbjct:  889 PYTNYTINVRSLNGYGWGNSSSKTIQTNQYISGPVSNFNCYNSSFNSIFCS--WGFPSKANGVILSYTI 955

[Close]

BLAST of SMED30030965 vs. Planmine SMEST
Match: SMESG000005237.1 (SMESG000005237.1)

HSP 1 Score: 181.03 bits (458), Expect = 3.434e-54
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1

Query:    4 YTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            YTNYTIN+RSLNG+GW N SSKTI+TNQYISGPVTNVTVNSSFPSFPLSITWAPPGV NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S   MP+NST+
Sbjct:  570 YTNYTINIRSLNGYGWGNLSSKTIKTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVTNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNLSVPRMPENSTD 671

HSP 2 Score: 171.4 bits (433), Expect = 8.041e-51
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            PYTNYTINVRSLNG+GW N SSKTIQT+QYISGPVTN++V SSFPSFPLSI W+PP V+NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S   +P+NST+
Sbjct:  829 PYTNYTINVRSLNGYGWGNLSSKTIQTSQYISGPVTNLSVTSSFPSFPLSIIWSPPVVSNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNLSVPRIPENSTD 931

HSP 3 Score: 170.629 bits (431), Expect = 1.747e-50
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTNA 303
            PYTNYTIN+RSLNG+GW N SSKTIQT+QY SG + N++V SSFPSFPLSITW PPGVANGEIVQY IWVQ TNNECVLTMSLNCTDCKN +S   MPDNST++
Sbjct:  699 PYTNYTINIRSLNGYGWGNSSSKTIQTDQYTSGSIMNLSVASSFPSFPLSITWEPPGVANGEIVQYLIWVQKTNNECVLTMSLNCTDCKNNLSVPAMPDNSTDS 802

HSP 4 Score: 150.214 bits (378), Expect = 2.466e-43
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISMPDNSTNA 303
            P T+Y +   +LN  GW +  S ++ T+Q+ISGPVTN++V S FP  PLSITWAPPGV NGEIVQY IWVQ TNNECVLTMSLNCTDCKNKISMPDNSTNA
Sbjct:  442 PATSYLVIATALNEFGWGDAQSISLLTDQFISGPVTNLSVTSLFPLSPLSITWAPPGVTNGEIVQYLIWVQKTNNECVLTMSLNCTDCKNKISMPDNSTNA 542

HSP 5 Score: 145.976 bits (367), Expect = 6.364e-42
Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            PYTNYTIN+RSLNG+GW N S+         SG + N++V SSFPSFPLSITW PPGVANGEIVQY IWVQNTNNECVLT+S NCTDCKN +S   MPDNST+
Sbjct:  959 PYTNYTINIRSLNGYGWGNSST---------SGSIMNLSVASSFPSFPLSITWEPPGVANGEIVQYLIWVQNTNNECVLTVSFNCTDCKNNLSVPAMPDNSTD 1052

HSP 6 Score: 81.6481 bits (200), Expect = 2.098e-19
Identity = 47/69 (68.12%), Postives = 50/69 (72.46%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFI 204
            PYTNYTINVRSLNG+GW N SSKTIQTNQYISGPV+N    NSSF S   S  W  P  ANG I+ Y I
Sbjct: 1080 PYTNYTINVRSLNGYGWGNSSSKTIQTNQYISGPVSNFNCYNSSFNSIFCS--WGFPSKANGVILSYTI 1146

[Close]

BLAST of SMED30030965 vs. Planmine SMEST
Match: SMESG000005237.1 (SMESG000005237.1)

HSP 1 Score: 181.03 bits (458), Expect = 3.595e-54
Identity = 89/102 (87.25%), Postives = 95/102 (93.14%), Query Frame = 1

Query:    4 YTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            YTNYTIN+RSLNG+GW N SSKTI+TNQYISGPVTNVTVNSSFPSFPLSITWAPPGV NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S   MP+NST+
Sbjct:  370 YTNYTINIRSLNGYGWGNLSSKTIKTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVTNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNLSVPRMPENSTD 471

HSP 2 Score: 171.4 bits (433), Expect = 8.336e-51
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            PYTNYTINVRSLNG+GW N SSKTIQT+QYISGPVTN++V SSFPSFPLSI W+PP V+NGEIVQYFIWVQNTNNECVLTMSLNCTDCKN +S   +P+NST+
Sbjct:  629 PYTNYTINVRSLNGYGWGNLSSKTIQTSQYISGPVTNLSVTSSFPSFPLSIIWSPPVVSNGEIVQYFIWVQNTNNECVLTMSLNCTDCKNNLSVPRIPENSTD 731

HSP 3 Score: 170.244 bits (430), Expect = 1.829e-50
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTNA 303
            PYTNYTIN+RSLNG+GW N SSKTIQT+QY SG + N++V SSFPSFPLSITW PPGVANGEIVQY IWVQ TNNECVLTMSLNCTDCKN +S   MPDNST++
Sbjct:  499 PYTNYTINIRSLNGYGWGNSSSKTIQTDQYTSGSIMNLSVASSFPSFPLSITWEPPGVANGEIVQYLIWVQKTNNECVLTMSLNCTDCKNNLSVPAMPDNSTDS 602

HSP 4 Score: 168.318 bits (425), Expect = 8.887e-50
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKIS---MPDNSTN 300
            PYTNYTIN+RSLNG+GW N SSKTIQT+QY SG + N++V SSFPSFPLSITW PPGVANGEIVQY IWVQNTNNECVLT+S NCTDCKN +S   MPDNST+
Sbjct:  759 PYTNYTINIRSLNGYGWGNSSSKTIQTDQYTSGSIMNLSVASSFPSFPLSITWEPPGVANGEIVQYLIWVQNTNNECVLTVSFNCTDCKNNLSVPAMPDNSTD 861

HSP 5 Score: 149.828 bits (377), Expect = 2.709e-43
Identity = 72/101 (71.29%), Postives = 82/101 (81.19%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLSITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISMPDNSTNA 303
            P T+Y +   +LN  GW +  S ++ T+Q+ISGPVTN++V S FP  PLSITWAPPGV NGEIVQY IWVQ TNNECVLTMSLNCTDCKNKISMPDNSTNA
Sbjct:  242 PATSYLVIATALNEFGWGDAQSISLLTDQFISGPVTNLSVTSLFPLSPLSITWAPPGVTNGEIVQYLIWVQKTNNECVLTMSLNCTDCKNKISMPDNSTNA 342

HSP 6 Score: 82.0333 bits (201), Expect = 1.897e-19
Identity = 47/69 (68.12%), Postives = 50/69 (72.46%), Query Frame = 1

Query:    1 PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTV-NSSFPSFPLSITWAPPGVANGEIVQYFI 204
            PYTNYTINVRSLNG+GW N SSKTIQTNQYISGPV+N    NSSF S   S  W  P  ANG I+ Y I
Sbjct:  889 PYTNYTINVRSLNGYGWGNSSSKTIQTNQYISGPVSNFNCYNSSFNSIFCS--WGFPSKANGVILSYTI 955

The following BLAST results are available for this feature:

BLAST of SMED30030965 vs. Ensembl Human
BLAST of SMED30030965 vs. Ensembl Celegans
BLAST of SMED30030965 vs. Ensembl Fly
BLAST of SMED30030965 vs. Ensembl Zebrafish
BLAST of SMED30030965 vs. Ensembl Xenopus
BLAST of SMED30030965 vs. Ensembl Mouse
BLAST of SMED30030965 vs. UniProt/SwissProt
BLAST of SMED30030965 vs. TrEMBL
BLAST of SMED30030965 vs. Ensembl Cavefish
BLAST of SMED30030965 vs. Ensembl Sea Lamprey
BLAST of SMED30030965 vs. Ensembl Yeast
BLAST of SMED30030965 vs. Ensembl Nematostella
BLAST of SMED30030965 vs. Ensembl Medaka
BLAST of SMED30030965 vs. Planmine SMEST

BLAST of SMED30030965 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30030965 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30030965 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30030965 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
nrcama	5.804e-8	39.29	neuronal cell adhesion molecule a [Source:ZFIN;Acc...	[more]
nrcama	5.975e-8	39.29	neuronal cell adhesion molecule a [Source:ZFIN;Acc...	[more]

BLAST of SMED30030965 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rai14	4.973e-6	32.29	retinoic acid induced 14 [Source:Xenbase;Acc:XB-GE...	[more]
rai14	4.985e-6	32.29	retinoic acid induced 14 [Source:Xenbase;Acc:XB-GE...	[more]
rai14	5.138e-6	32.29	retinoic acid induced 14 [Source:Xenbase;Acc:XB-GE...	[more]
rai14	5.335e-6	32.29	retinoic acid induced 14 [Source:Xenbase;Acc:XB-GE...	[more]
rai14	5.338e-6	32.29	retinoic acid induced 14 [Source:Xenbase;Acc:XB-GE...	[more]

BLAST of SMED30030965 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30030965 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30030965 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30030965 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30030965 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000005050.1	1.589e-6	33.33	pep scaffold:Pmarinus_7.0:GL481744:10549:20708:-1 ...	[more]

BLAST of SMED30030965 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30030965 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30030965 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSORLT00000004171.2	3.824e-6	34.04	neuronal cell adhesion molecule [Source:NCBI gene;...	[more]
ENSORLT00000029347.1	3.951e-6	34.04	neuronal cell adhesion molecule [Source:NCBI gene;...	[more]
ENSORLT00000038551.1	4.029e-6	34.04	neuronal cell adhesion molecule [Source:NCBI gene;...	[more]
ENSORLT00000040962.1	4.029e-6	34.04	neuronal cell adhesion molecule [Source:NCBI gene;...	[more]
ENSORLT00000039155.1	4.029e-6	34.04	neuronal cell adhesion molecule [Source:NCBI gene;...	[more]

BLAST of SMED30030965 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000005237.1	3.139e-55	87.25	SMESG000005237.1	[more]
SMESG000005237.1	2.927e-54	87.25	SMESG000005237.1	[more]
SMESG000005237.1	3.020e-54	87.25	SMESG000005237.1	[more]
SMESG000005237.1	3.434e-54	87.25	SMESG000005237.1	[more]
SMESG000005237.1	3.595e-54	87.25	SMESG000005237.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30030965 ID=SMED30030965|Name=SMED30030965|organism=Schmidtea mediterranea sexual|type=transcript|length=303bp
CCCTATACAAATTATACAATTAATGTTAGATCATTGAACGGACATGGATG
GAGCAATCCATCTAGTAAGACAATTCAGACAAATCAATATATCAGTGGCC
CAGTGACCAATGTAACGGTAAATAGCTCATTTCCATCATTTCCACTCTCT
ATCACATGGGCGCCTCCCGGAGTTGCGAATGGAGAAATCGTCCAATATTT
TATCTGGGTGCAGAATACAAATAATGAATGTGTATTGACAATGTCATTGA
ATTGCACCGACTGTAAAAATAAAATATCAATGCCAGATAATAGCACTAAT
GCA

protein sequence of SMED30030965-orf-1

>SMED30030965-orf-1 ID=SMED30030965-orf-1|Name=SMED30030965-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=101bp
PYTNYTINVRSLNGHGWSNPSSKTIQTNQYISGPVTNVTVNSSFPSFPLS
ITWAPPGVANGEIVQYFIWVQNTNNECVLTMSLNCTDCKNKISMPDNSTN
A

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000034	epidermis
PLANA:0000054	dorsal region of the epidermis
PLANA:0000106	ciliated epithelial cell

Vocabulary: **INTERPRO**
Term	Definition
IPR036116	FN3_sf
IPR013783	Ig-like_fold
IPR003961	FN3_dom

Vocabulary: **molecular function**
Term	Definition
GO:0005515	protein binding

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036116	Fibronectin type III superfamily	SUPERFAMILY	SSF49265	Fibronectin type III	coord: 1..82

Main menu

SMED30030965

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Owlery

blazegraph-runner