SMED30030947
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30030947 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of SMED30030947 vs. Ensembl Human
Match: FAM200B (family with sequence similarity 200 member B [Source:HGNC Symbol;Acc:HGNC:27740]) HSP 1 Score: 63.929 bits (154), Expect = 6.275e-16 Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = -3 Query: 518 EKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITK 754 ++P C++ + +LA S++P+KLKR LET H+E KP+E+FQR + + Q AV+ ALL+ Y V+YR+ K Sbjct: 82 DRPQCVICNNILAN-ESLKPSKLKRHLETQHAELIDKPLEYFQRKKKDIKLSTQFLSCSTAVSEKALLSSYLVAYRVAK 159 HSP 2 Score: 41.2022 bits (95), Expect = 6.275e-16 Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = -2 Query: 249 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTS-KFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDIL 491 M + +F + A +L+ I +N+ + RI I+E + LI L++ F I +DE+TDI L+ Y RY ++ LED L Sbjct: 178 MVRTIFDDKSADKLKTIP-NDNTVSLRICTIAEHLETMLITRLQSGIDFAIQLDESTDIGSCTTLLVYVRYAWQDDFLEDFL 258
BLAST of SMED30030947 vs. Ensembl Human
Match: FAM200B (family with sequence similarity 200 member B [Source:HGNC Symbol;Acc:HGNC:27740]) HSP 1 Score: 63.929 bits (154), Expect = 6.275e-16 Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = -3 Query: 518 EKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITK 754 ++P C++ + +LA S++P+KLKR LET H+E KP+E+FQR + + Q AV+ ALL+ Y V+YR+ K Sbjct: 82 DRPQCVICNNILAN-ESLKPSKLKRHLETQHAELIDKPLEYFQRKKKDIKLSTQFLSCSTAVSEKALLSSYLVAYRVAK 159 HSP 2 Score: 41.2022 bits (95), Expect = 6.275e-16 Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = -2 Query: 249 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTS-KFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDIL 491 M + +F + A +L+ I +N+ + RI I+E + LI L++ F I +DE+TDI L+ Y RY ++ LED L Sbjct: 178 MVRTIFDDKSADKLKTIP-NDNTVSLRICTIAEHLETMLITRLQSGIDFAIQLDESTDIGSCTTLLVYVRYAWQDDFLEDFL 258
BLAST of SMED30030947 vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851]) HSP 1 Score: 52.7582 bits (125), Expect = 4.693e-15 Identity = 28/84 (33.33%), Postives = 50/84 (59.52%), Query Frame = -2 Query: 231 MFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSK-FDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIP 479 M ES A ++ Q+ L+N++ A RI E++ D+ +QLI ++ +K F + +DE DIA L+ Y R+ +++ E+ F +P Sbjct: 855 MLGESAAKKVAQVPLSNDTIARRIQELANDMEDQLIEQIKLAKYFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLP 938 HSP 2 Score: 49.2914 bits (116), Expect = 4.693e-15 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = -3 Query: 518 IDG-LEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITK 766 IDG + KP C++ VLA +M+P+KLKR L + H E + +P EFF+R E Q + + + AL A Y V+ + K Sbjct: 750 IDGEVLKPQCIICGDVLA-NEAMKPSKLKRHLYSKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAK 832
BLAST of SMED30030947 vs. Ensembl Human
Match: ZBED9 (zinc finger BED-type containing 9 [Source:HGNC Symbol;Acc:HGNC:13851]) HSP 1 Score: 52.373 bits (124), Expect = 5.363e-15 Identity = 28/84 (33.33%), Postives = 50/84 (59.52%), Query Frame = -2 Query: 231 MFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSK-FDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIP 479 M ES A ++ Q+ L+N++ A RI E++ D+ +QLI ++ +K F + +DE DIA L+ Y R+ +++ E+ F +P Sbjct: 704 MLGESAAKKVAQVPLSNDTIARRIQELANDMEDQLIEQIKLAKYFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLP 787 HSP 2 Score: 49.2914 bits (116), Expect = 5.363e-15 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = -3 Query: 518 IDG-LEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITK 766 IDG + KP C++ VLA +M+P+KLKR L + H E + +P EFF+R E Q + + + AL A Y V+ + K Sbjct: 599 IDGEVLKPQCIICGDVLA-NEAMKPSKLKRHLYSKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAK 681
BLAST of SMED30030947 vs. Ensembl Human
Match: ZBED5 (zinc finger BED-type containing 5 [Source:HGNC Symbol;Acc:HGNC:30803]) HSP 1 Score: 51.2174 bits (121), Expect = 1.413e-14 Identity = 25/83 (30.12%), Postives = 50/83 (60.24%), Query Frame = -2 Query: 234 MFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLR-TSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPI 479 MF E Y+ ++ + L+N++ A RI +++ DI +L+ L+ F + +DE+ D++ A L+ + RY ++ ED+L C+ + Sbjct: 229 MFDEQYSKKIDAVQLSNSTVARRIKDLAADIEEELVCRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESL 311 HSP 2 Score: 49.2914 bits (116), Expect = 1.413e-14 Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = -3 Query: 482 CLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAV-TPIALLALYHVSYRIT---KYIKIGELLI--CSK 742 C+L K+L+ +S+ P+KL+R LET H+ Y K + FF++ LD K K++ A A Y+VSY I + IGELLI C+K Sbjct: 132 CVLCKKILS-NSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAK 223
BLAST of SMED30030947 vs. Ensembl Mouse
Match: Zbed5 (zinc finger, BED type containing 5 [Source:MGI Symbol;Acc:MGI:1919220]) HSP 1 Score: 58.151 bits (139), Expect = 1.018e-15 Identity = 27/94 (28.72%), Postives = 56/94 (59.57%), Query Frame = -2 Query: 213 QIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKF---DIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIPRIASKL 485 ++M + + +L + L+N++ RI+++S DI +Q++ ++++ I +DE+TD+A L+ Y RY+ + ++ L CKP+ R A+ L Sbjct: 286 RVMIGDEFVTKLSAVSLSNDTVRRRIHDMSADILDQVVQEIKSAPLPICSIQLDESTDVANCLQLMVYVRYINDGDFKDEFLCCKPLERTATAL 379 HSP 2 Score: 45.4394 bits (106), Expect = 1.018e-15 Identity = 33/109 (30.28%), Postives = 52/109 (47.71%), Query Frame = -3 Query: 509 RQSFQEKAIQFIIFIVRFTSVNIDGLEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDE-TNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK 832 R+ + E +Q+ FTS G+E+P C++ VL+ SM+P KLKR E+ HS + K +F+ D + T K A+ Y V+ RI + +K Sbjct: 166 RRKYNEGFLQY-----GFTSTITVGIERPQCVICGVVLS-AESMKPNKLKRHFESKHSSFAGKDTNYFRSKADGLKKARPDTGSKSNKQNVAAVETSYLVALRIARDMK 268
BLAST of SMED30030947 vs. UniProt/SwissProt
Match: sp|P0CF97|F200B_HUMAN (Protein FAM200B OS=Homo sapiens OX=9606 GN=FAM200B PE=3 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 2.757e-15 Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = -3 Query: 518 EKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITK 754 ++P C++ + +LA S++P+KLKR LET H+E KP+E+FQR + + Q AV+ ALL+ Y V+YR+ K Sbjct: 82 DRPQCVICNNILAN-ESLKPSKLKRHLETQHAELIDKPLEYFQRKKKDIKLSTQFLSCSTAVSEKALLSSYLVAYRVAK 159 HSP 2 Score: 41.2022 bits (95), Expect = 2.757e-15 Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = -2 Query: 249 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTS-KFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDIL 491 M + +F + A +L+ I +N+ + RI I+E + LI L++ F I +DE+TDI L+ Y RY ++ LED L Sbjct: 178 MVRTIFDDKSADKLKTIP-NDNTVSLRICTIAEHLETMLITRLQSGIDFAIQLDESTDIGSCTTLLVYVRYAWQDDFLEDFL 258
BLAST of SMED30030947 vs. UniProt/SwissProt
Match: sp|Q6R2W3|SCND3_HUMAN (SCAN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=ZBED9 PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 2.061e-14 Identity = 28/84 (33.33%), Postives = 50/84 (59.52%), Query Frame = -2 Query: 231 MFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSK-FDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIP 479 M ES A ++ Q+ L+N++ A RI E++ D+ +QLI ++ +K F + +DE DIA L+ Y R+ +++ E+ F +P Sbjct: 855 MLGESAAKKVAQVPLSNDTIARRIQELANDMEDQLIEQIKLAKYFSLQLDECRDIANMIILLVYVRFEHDDDIKEEFFFSASLP 938 HSP 2 Score: 49.2914 bits (116), Expect = 2.061e-14 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = -3 Query: 518 IDG-LEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITK 766 IDG + KP C++ VLA +M+P+KLKR L + H E + +P EFF+R E Q + + + AL A Y V+ + K Sbjct: 750 IDGEVLKPQCIICGDVLA-NEAMKPSKLKRHLYSKHKEISSQPKEFFERKSSELKSQPKQVFNVSHINISALRASYKVALPVAK 832
BLAST of SMED30030947 vs. UniProt/SwissProt
Match: sp|Q49AG3|ZBED5_HUMAN (Zinc finger BED domain-containing protein 5 OS=Homo sapiens OX=9606 GN=ZBED5 PE=2 SV=2) HSP 1 Score: 51.2174 bits (121), Expect = 6.206e-14 Identity = 25/83 (30.12%), Postives = 50/83 (60.24%), Query Frame = -2 Query: 234 MFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLR-TSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPI 479 MF E Y+ ++ + L+N++ A RI +++ DI +L+ L+ F + +DE+ D++ A L+ + RY ++ ED+L C+ + Sbjct: 229 MFDEQYSKKIDAVQLSNSTVARRIKDLAADIEEELVCRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESL 311 HSP 2 Score: 49.2914 bits (116), Expect = 6.206e-14 Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = -3 Query: 482 CLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAV-TPIALLALYHVSYRIT---KYIKIGELLI--CSK 742 C+L K+L+ +S+ P+KL+R LET H+ Y K + FF++ LD K K++ A A Y+VSY I + IGELLI C+K Sbjct: 132 CVLCKKILS-NSSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAK 223
BLAST of SMED30030947 vs. UniProt/SwissProt
Match: sp|A4Z944|ZBED5_CANLF (Zinc finger BED domain-containing protein 5 OS=Canis lupus familiaris OX=9615 GN=ZBED5 PE=4 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 6.572e-14 Identity = 25/83 (30.12%), Postives = 50/83 (60.24%), Query Frame = -2 Query: 234 MFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLR-TSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPI 479 MF E Y+ ++ + L+N++ A RI +++ DI +L+ L+ F + +DE+ D++ A L+ + RY ++ ED+L C+ + Sbjct: 230 MFDEQYSKKIDAVQLSNSTVARRIKDLAADIEEELVCRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESL 312 HSP 2 Score: 49.2914 bits (116), Expect = 6.572e-14 Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = -3 Query: 482 CLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAV-TPIALLALYHVSYRIT---KYIKIGELLI--CSK 742 C+L K+L+ +S+ P+KL+R LET H+ Y K + FF++ LD K K++ A A Y+VSY I + IGELLI C+K Sbjct: 133 CVLCKKILSN-SSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAK 224
BLAST of SMED30030947 vs. UniProt/SwissProt
Match: sp|A4Z943|ZBED5_BOVIN (Zinc finger BED domain-containing protein 5 OS=Bos taurus OX=9913 GN=ZBED5 PE=4 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 6.572e-14 Identity = 25/83 (30.12%), Postives = 50/83 (60.24%), Query Frame = -2 Query: 234 MFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLR-TSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPI 479 MF E Y+ ++ + L+N++ A RI +++ DI +L+ L+ F + +DE+ D++ A L+ + RY ++ ED+L C+ + Sbjct: 230 MFDEQYSKKIDAVQLSNSTVARRIKDLAADIEEELVCRLKICDGFSLQLDESADVSGLAVLLVFVRYRFNKSIEEDLLLCESL 312 HSP 2 Score: 48.9062 bits (115), Expect = 6.572e-14 Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = -3 Query: 482 CLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAV-TPIALLALYHVSYRIT---KYIKIGELLI--CSK 742 C+L K+L+ +S+ P+KL+R LET H+ Y K + FF++ LD K K++ A A Y+VSY I + IGELLI C+K Sbjct: 133 CVLCKKILSN-SSLAPSKLRRHLETKHAAYKDKDISFFKQHLDSPENNKPPTPKIVNTDNESATEASYNVSYHIALSGEAHTIGELLIKPCAK 224
BLAST of SMED30030947 vs. TrEMBL
Match: A0A2S2R4C3 (SCAN domain-containing protein 3 OS=Sipha flava OX=143950 GN=SCAND3_6 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 3.554e-29 Identity = 39/86 (45.35%), Postives = 60/86 (69.77%), Query Frame = -2 Query: 234 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPI 491 M IM ES L ++ L+NN+ + RI+ ++ED+ +QLI ++ +F + +DEATD KDAHLI Y R++ G++M+ED+LFCK I Sbjct: 152 MVNIMVGESAGKLLSKVPLSNNTVSRRIHHMAEDLNDQLIEKIKEKEFGLQLDEATDNNKDAHLICYVRFIDGDDMVEDLLFCKNI 237 HSP 2 Score: 76.2554 bits (186), Expect = 3.554e-29 Identity = 48/100 (48.00%), Postives = 59/100 (59.00%), Query Frame = -3 Query: 491 FTSVNIDGLEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK---IGELLI 781 FTS I+G E+P+C+L KVLAP M P+KLKR LE H KP ++F R L E +K TF K ++ AL+A Y VSYRI K K I E LI Sbjct: 47 FTSTEINGEERPLCVLCMKVLAP-ECMLPSKLKRHLEANHKYTIGKPRDYFIRKLKELKQEKSTFFKNASIPTNALIASYKVSYRIAKCKKPHTIAEELI 145
BLAST of SMED30030947 vs. TrEMBL
Match: A0A1B6ISX9 (Uncharacterized protein OS=Homalodisca liturata OX=320908 GN=g.41333 PE=4 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 7.380e-29 Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = -2 Query: 234 AAYMFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPI 500 A M +IM E QL +I L+NN+ + RI++ISEDI QLI LR +F I +DEATD KDA+LI Y RYV N ++ED+LFCK I Sbjct: 154 AVDMAKIMIGEDAGKQLLKIPLSNNTISRRIDDISEDINKQLINSLRGKEFGIQLDEATDSHKDANLICYVRYVNENQLIEDLLFCKEI 242 HSP 2 Score: 69.3218 bits (168), Expect = 7.380e-29 Identity = 44/100 (44.00%), Postives = 56/100 (56.00%), Query Frame = -3 Query: 491 FTSVNIDGLEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK---IGELLI 781 F+ + I+ E+P C++ KVL+ SM P+KLKR LET+HS KP EFF R E QK +F K ALLA + V+Y I K K I E LI Sbjct: 52 FSCIEINNEERPQCVVCMKVLS-VESMLPSKLKRHLETVHSNLIGKPREFFIRKKTEAVKQKSSFSKHSKANSDALLASFKVAYHIAKCKKPHTIAEELI 150
BLAST of SMED30030947 vs. TrEMBL
Match: A0A498NJT7 (Zinc finger BED domain-containing 5-like protein OS=Labeo rohita OX=84645 GN=ROHU_004686 PE=4 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.324e-27 Identity = 39/91 (42.86%), Postives = 61/91 (67.03%), Query Frame = -2 Query: 219 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIPRIAS 491 M +M E+ +L+ I ++N++ + RI +I+ DI QLI +R ++F + VDEATD KD+ LIAY R+V ++ ED+LFCK IP+ A+ Sbjct: 146 MVSVMLDEASVAKLKTIPVSNDTISRRIQDIANDIEEQLIEKIRGTRFALQVDEATDSNKDSLLIAYVRFVDFESLNEDLLFCKYIPKRAT 236 HSP 2 Score: 76.2554 bits (186), Expect = 2.324e-27 Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = -3 Query: 491 SVNIDGLE-KPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK---IGELLI 775 +VN+ G E +PMC+L K LA +SM+P KL+R +E++H Y +KP+EFF+R LD+ Q+ F K T A LA Y ++YR+ + K I E LI Sbjct: 42 TVNVVGEEERPMCVLCLKTLAA-DSMKPTKLRRHIESMHPNYVQKPIEFFKRKLDQYRGQQSRFVKATTATAKAQLASYKIAYRVAQCKKSHTIAEELI 139
BLAST of SMED30030947 vs. TrEMBL
Match: A0A498MLE5 (Zinc finger BED domain-containing 5-like protein OS=Labeo rohita OX=84645 GN=ROHU_025652 PE=4 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.842e-27 Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = -3 Query: 491 SVNIDGLE-KPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK---IGELLI 775 +VN+ G E +PMC+L K LA +SM+P KL+R +E++H Y +KP+EFF+R LD+ Q+ F K T A LA Y ++YR+ + K I E LI Sbjct: 42 TVNVVGEEERPMCVLCLKTLAA-DSMKPTKLRRHIESMHPNYVQKPIEFFKRKLDQYRGQQSRFVKATTATAKAQLASYKIAYRVAQCKKSHTIAEELI 139 HSP 2 Score: 76.2554 bits (186), Expect = 3.842e-27 Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = -2 Query: 219 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIPRIAS 491 M +M E+ +L+ I ++N++ + RI +I+ DI QLI +R +F + VDEATD KD+ LIAY R+V ++ ED+LFCK IP+ A+ Sbjct: 146 MVSVMLDEASVAKLKTIPVSNDTISRRIQDIANDIEEQLIEKIRGKRFALQVDEATDSNKDSLLIAYVRFVDFESLNEDLLFCKYIPKRAT 236
BLAST of SMED30030947 vs. TrEMBL
Match: A0A087UJ93 (SCAN domain-containing protein 3 (Fragment) OS=Stegodyphus mimosarum OX=407821 GN=X975_09699 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.369e-26 Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = -3 Query: 491 RQSFQEKAIQFIIFIVRFTSVNIDGLEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK---IGELLI 832 ++ + E +QF FT N +G E+P+CL+ +K+LA SM+P+KLKR LE+ H Y KP E+F+R+ N +K+ F+KL+ V LLA Y VSY I K K IGE L+ Sbjct: 37 KRKYDESFLQF-----GFTLQNCEGNEQPLCLICNKLLAS-ESMKPSKLKRHLESKHISYVNKPKEYFERLYKSLNKEKKIFEKLITVNEKYLLASYEVSYCIAKNKKPFTIGEDLV 147 HSP 2 Score: 66.6254 bits (161), Expect = 1.369e-26 Identity = 34/90 (37.78%), Postives = 58/90 (64.44%), Query Frame = -2 Query: 234 AAYMFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTS-KFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPI 500 A M +I+ Y +++I L+N++ ++RI++I++D QLI ++ S KF I +DE TD K A L+ Y RYV ++ E++LFC+P+ Sbjct: 151 AIKMVEILHGRKYGDDIRKIPLSNDTVSNRISDINKDQLIQLITRIKESPKFSIQLDETTDFTKLAQLLVYVRYVYKESVEEELLFCRPM 240
BLAST of SMED30030947 vs. Ensembl Cavefish
Match: ENSAMXT00000051422.1 (pep primary_assembly:Astyanax_mexicanus-2.0:15:35461191:35465166:-1 gene:ENSAMXG00000032672.1 transcript:ENSAMXT00000051422.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.1814 bits (191), Expect = 7.290e-27 Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = -2 Query: 231 AAYMFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKF-DIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIP 500 A M +M E QL I L++N+ RINE++ D+ QLI +R S+F I +DE+TDIA ++L+A+ RY + EDILFCKP+P Sbjct: 198 AKEMVSVMLGEKPCKQLNLISLSDNTVERRINEMAHDVTQQLIKRVRESRFYAIQLDESTDIANLSNLLAFVRYEHNREIFEDILFCKPLP 288 HSP 2 Score: 63.1586 bits (152), Expect = 7.290e-27 Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = -3 Query: 491 FTSVNIDGLEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK-------IGELLI 781 FT + P+C++ S+VLA +++P KL+R LET HSEY KP+EFF+ L E +K+T + LA + SYR+ + I IGE LI Sbjct: 94 FTCTGTENEPLPLCVVCSEVLA-NEALKPTKLRRHLETKHSEYASKPVEFFENKLKEYQSRKKTLE--LACSGTDNAKAVEASYRVAQLIAKAGKPHTIGESLI 194
BLAST of SMED30030947 vs. Ensembl Cavefish
Match: ENSAMXT00000044261.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02000070.1:2279767:2281653:1 gene:ENSAMXG00000037161.1 transcript:ENSAMXT00000044261.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 78.1814 bits (191), Expect = 7.500e-26 Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = -2 Query: 231 AAYMFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKF-DIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIP 500 A M +M E QL I L++N+ RINE++ D+ QLI +R S+F I +DE+TDIA ++L+A+ RY + EDILFCKP+P Sbjct: 155 AKEMVSVMLGEKPCKQLNLISLSDNTVERRINEMAHDVTQQLIKRVRESRFYAIQLDESTDIANLSNLLAFVRYEHNREIFEDILFCKPLP 245 HSP 2 Score: 59.3066 bits (142), Expect = 7.500e-26 Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = -3 Query: 491 FTSVNIDGLEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK-------IGELLI 781 FT + P+C++ S+VLA +++ KL+R LET HSEY KP+EFF+ L E +K+T + LA + SYR+ + I IGE LI Sbjct: 51 FTCTGTENEPLPLCVVCSEVLA-NEALKTTKLRRHLETKHSEYASKPVEFFENKLKEYQSRKKTLE--LACSGTDHAKAVEASYRVAQLIAKAGKPHTIGESLI 151
BLAST of SMED30030947 vs. Ensembl Cavefish
Match: ENSAMXT00000057314.1 (pep primary_assembly:Astyanax_mexicanus-2.0:1:4224188:4227217:-1 gene:ENSAMXG00000029268.1 transcript:ENSAMXT00000057314.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 58.5362 bits (140), Expect = 1.370e-8 Identity = 29/81 (35.80%), Postives = 50/81 (61.73%), Query Frame = -2 Query: 249 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDIL 491 M + M A + + + L+NN+ RI+ ++ ++ N L+ L+TS F I +DE T +A++A LI YA+Y+ G + +DIL Sbjct: 125 MAERMCGPQVANKFKIVPLSNNTVKDRIDRMAGNVENTLVEKLKTSPFSIQLDETTTVAEEAILIVYAQYIEGTEVKQDIL 205
BLAST of SMED30030947 vs. Ensembl Medaka
Match: ENSORLT00000040389.1 (pep primary_assembly:ASM223467v1:19:265767:268275:-1 gene:ENSORLG00000025045.1 transcript:ENSORLT00000040389.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 72.0182 bits (175), Expect = 2.095e-27 Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = -3 Query: 491 FTSVNIDGLEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK---IGELLI 781 FT + E+P+CLL K+LA +SM+P KL+R L+TLH + KP+EFFQR E Q F +V ALLA Y V+Y+I + K I E LI Sbjct: 41 FTVTTVGDEERPVCLLCLKMLAA-DSMKPNKLRRHLKTLHPNHADKPLEFFQRKRAEYCQQSSRFVSATSVNQRALLASYKVAYQIAQCKKPHTIAEELI 139 HSP 2 Score: 70.8626 bits (172), Expect = 2.095e-27 Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = -2 Query: 195 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPI--PRIASKLFPQSTC 491 M +M ++ A +L+ + L+N++ A RIN+I+ D+ QL+ L+ +F + DEATD KD IAY R+ + +++ ED+LFCK + A +LF C Sbjct: 146 MVSVMLDDASAAKLKTVPLSNDTVARRINDIANDLKEQLVEKLKDKRFALQFDEATDSNKDCLFIAYVRFDMTHSLCEDLLFCKYVRDRATAEELFKMLDC 246
BLAST of SMED30030947 vs. Ensembl Medaka
Match: ENSORLT00000035512.1 (pep primary_assembly:ASM223467v1:11:22712371:22714941:1 gene:ENSORLG00000026495.1 transcript:ENSORLT00000035512.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 72.0182 bits (175), Expect = 2.238e-27 Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = -3 Query: 491 FTSVNIDGLEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK---IGELLI 781 FT + E+P+CLL K+LA +SM+P KL+R L+TLH + KP+EFFQR E Q F +V ALLA Y V+Y+I + K I E LI Sbjct: 41 FTVTTVGDEERPVCLLCLKMLAA-DSMKPNKLRRHLKTLHPNHADKPLEFFQRKRAEYCQQSSRFVSATSVNQRALLASYKVAYQIAQCKKPHTIAEELI 139 HSP 2 Score: 70.8626 bits (172), Expect = 2.238e-27 Identity = 37/101 (36.63%), Postives = 61/101 (60.40%), Query Frame = -2 Query: 195 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPI--PRIASKLFPQSTC 491 M +M ++ A +L+ + L+N++ A RIN+I+ D+ QL+ L+ +F + DEATD KD IAY R+ + +++ ED+LFCK + A +LF C Sbjct: 146 MVSVMLDDASAAKLKTVPLSNDTVARRINDIANDLKEQLVEKLKDKRFALQFDEATDSNKDCLFIAYVRFDMTHSLCEDLLFCKYVRDRATAEELFKMLDC 246
BLAST of SMED30030947 vs. Ensembl Medaka
Match: ENSORLT00000035028.1 (pep primary_assembly:ASM223467v1:2:7372701:7381259:1 gene:ENSORLG00000027324.1 transcript:ENSORLT00000035028.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 62.003 bits (149), Expect = 7.411e-18 Identity = 28/91 (30.77%), Postives = 54/91 (59.34%), Query Frame = -2 Query: 231 AAYMFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKF-DIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIP 500 A M I F ++ +I L+N++ RI ++E + +QL+ LR S+F + +DE+TD+ +A+L+ + RY+ + ++ LFC+ +P Sbjct: 94 AKVMANIFFGGKAGDEINRIPLSNDTVQRRIKAMAESVEHQLVTHLRQSQFFSLQLDESTDLGNEANLLCFVRYIYAGGLHDEFLFCRSLP 184 HSP 2 Score: 48.521 bits (114), Expect = 7.411e-18 Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = -3 Query: 491 SMRPAKLKRSLETLHSEYTKKPMEFFQRMLDE--TNIQKQTFKKLLAVTPI-ALLALYHVSYRITKYIK---IGELLI 706 +M+PAKLKR LET H EY KP+ FF+R DE ++ K+T + + A A Y VS I K K IGE L+ Sbjct: 13 AMKPAKLKRHLETKHKEYQGKPIGFFERKCDELKKHMMKETSQFFAPGENVKATEASYKVSLLIAKAGKPHSIGENLV 90
BLAST of SMED30030947 vs. Ensembl Medaka
Match: ENSORLT00000032459.1 (pep primary_assembly:ASM223467v1:8:14240678:14247355:1 gene:ENSORLG00000024991.1 transcript:ENSORLT00000032459.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 61.2326 bits (147), Expect = 5.360e-17 Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = -2 Query: 219 AAYMFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKF-DIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIPRIAS 500 A M + M E+ A +L+ I L+N+ + RI +I+ DI QL+ +R S F + +DE+TD+ A L+ + RY +++ EDILFC +P A+ Sbjct: 126 AVDMCREMIGEAAAKKLKTIPLSNDIVSHRIADIASDIEQQLLERIRKSPFFSLQLDESTDVTNAALLLVFVRYRWDSSLQEDILFCGELPTRAT 220 HSP 2 Score: 46.595 bits (109), Expect = 5.360e-17 Identity = 32/104 (30.77%), Postives = 51/104 (49.04%), Query Frame = -3 Query: 491 IVRFTSVNIDGLEKPMCLLYSKVLAPYN-SMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRIT---KYIKIGELLI 790 ++ F VN +P L N +++P+KLKR LET H + KP+++F+R D +Q+++ L AL A Y V+ R+ K I E L+ Sbjct: 19 LINFGFVNGGSEAEPRAQCVECGLTLSNEALKPSKLKRHLETKHPKLIGKPVDYFKRKDDGLQMQRRSIVSLTGDAKCALKASYLVARRVAQSKKAFTIAEELV 122
BLAST of SMED30030947 vs. Ensembl Medaka
Match: ENSORLT00000028620.1 (pep primary_assembly:ASM223467v1:3:35179252:35181570:1 gene:ENSORLG00000028714.1 transcript:ENSORLT00000028620.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 60.077 bits (144), Expect = 8.326e-16 Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = -2 Query: 219 AAYMFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKF-DIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIPRIAS 500 A M + M E+ A +L+ I L+N+ + RI +++ DI QL+ +R S F + +DE+TD+ A L+ + RY +++ EDILFC +P A+ Sbjct: 172 AVDMCREMIGEAAAKKLKTIPLSNDIVSHRIADMASDIEQQLLGRIRKSPFFSLQLDESTDVTNAALLLVFVRYRWDSSLQEDILFCGELPTRAT 266 HSP 2 Score: 43.8986 bits (102), Expect = 8.326e-16 Identity = 31/103 (30.10%), Postives = 51/103 (49.51%), Query Frame = -3 Query: 491 VRFTSVNIDGLEKPMCLLYSKVLAPYN-SMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRIT---KYIKIGELLI 787 ++F VN +P L N +++P+KLKR LET + + KP+++F+R D +Q+++ L AL A Y V+ R+ K I E L+ Sbjct: 66 IKFGFVNGGSEAEPRAQCVECGLTLSNEALKPSKLKRHLETKYPKLIGKPVDYFKRKDDGLQMQRRSIVSLTGDAKCALKASYLVARRVALNKKAFTIAEELV 168
BLAST of SMED30030947 vs. Planmine SMEST
Match: SMESG000029259.1 (SMESG000029259.1) HSP 1 Score: 97.0561 bits (240), Expect = 2.279e-20 Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 Query: 13 ENIHL-FCGSLGDTF-REKYICAKIDHHSRYISLTPISRQDENTIKKVLLNNWILKFGPPNQVHVDCGKSFEAILGIGLQNNISSNILFPTTY 285 E I++ CG L +TF ++KYIC IDH+S+YISLT I++QDE TI + LLN WILKFG P ++HVDCGK+FEA L ++F + Y Sbjct: 3294 EKIYMDICGPLKETFNKKKYICGIIDHYSKYISLTAINKQDERTISETLLNKWILKFGAPKELHVDCGKNFEARSIKELAKTAGIELIFSSPY 3386
BLAST of SMED30030947 vs. Planmine SMEST
Match: SMESG000015406.1 (SMESG000015406.1) HSP 1 Score: 63.929 bits (154), Expect = 1.674e-19 Identity = 31/90 (34.44%), Postives = 57/90 (63.33%), Query Frame = -2 Query: 231 AAYMFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIP 500 A + + +F E A ++ + L+N++ A +I +++ +I ++LI+ L+ S F + +DE+TDIA A L+ + RY N ED+L C+P+P Sbjct: 219 AVDIAKCIFDEKSAKEITDVPLSNDTVARQIKDLASNIKSKLIFRLKNSNFSLQMDESTDIAGLAILLVFVRYQHTNLFEEDLLLCEPLP 308 HSP 2 Score: 51.9878 bits (123), Expect = 1.674e-19 Identity = 37/95 (38.95%), Postives = 49/95 (51.58%), Query Frame = -3 Query: 491 IDGLEKPMCLLYSKVLAPYNSMRPAKLKRSLETLHSEYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRIT---KYIKIGELLI 766 ID P C+L SK+ P ++M PAK++R LET+H E+ K ++FF DE N + A A Y VSYRI + IGE LI Sbjct: 135 IDANNVPQCVLCSKMF-PNSAMVPAKMRRHLETIHPEFKHKQVDFFILKSDEINEK-------------ATEASYIVSYRIALAGEAHTIGETLI 215
BLAST of SMED30030947 vs. Planmine SMEST
Match: SMESG000059630.1 (SMESG000059630.1) HSP 1 Score: 71.2478 bits (173), Expect = 7.905e-13 Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = -2 Query: 291 MFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAY 491 M ++M ESYA QL+ I LA+N+ RI++ISED+C+ LI ++ S F + DEA D+ KDAHLI Y Sbjct: 119 MIEMMLGESYADQLKIIPLADNTVGRRISDISEDLCDLLIEKVKLSSFALQADEAIDVLKDAHLITY 185
BLAST of SMED30030947 vs. Planmine SMEST
Match: SMESG000019238.1 (SMESG000019238.1) HSP 1 Score: 61.6178 bits (148), Expect = 1.402e-12 Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = -2 Query: 219 ESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAHLIAYARYVVGNNMLEDILFCKPIPRIAS 470 E++A +L+ I L+N++ A R+ ++ED+ +QL L F I +DE D KDAHLIAY + G + +E++LF K I + A+ Sbjct: 47 ENFAKKLKSIPLSNDTVAPRVGGMAEDVQHQLFARLCEKLFSIQLDETIDNNKDAHLIAYVHFCDGVSAVEELLFWKSIQQRAT 130 HSP 2 Score: 30.4166 bits (67), Expect = 1.402e-12 Identity = 20/41 (48.78%), Postives = 25/41 (60.98%), Query Frame = -3 Query: 491 IQKQTFKKLLAVTPIALLALYHVSYRITKYIK---IGELLI 604 +QK FK L+V ALLA Y V Y+I++ K IGE LI Sbjct: 1 MQKLVFKNTLSVNEQALLASYKVLYQISRCKKPHTIGEELI 41
BLAST of SMED30030947 vs. Planmine SMEST
Match: SMESG000073961.1 (SMESG000073961.1) HSP 1 Score: 50.447 bits (119), Expect = 1.426e-12 Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = -2 Query: 303 AAYMFQIMFSESYA*QLQQILLANNSFASRINEISEDICNQLIYWLRTSKFDIGVDEATDIAKDAH 500 A + + MF E++A +L+ I L+N++ A + ++ED+ +QL LR F I +DEA D KDAH Sbjct: 269 AIEIVETMFGENFAKKLKSIPLSNDTVARHVGGMAEDVQHQLFAKLRRKLFSIQLDEAIDNNKDAH 334 HSP 2 Score: 41.9726 bits (97), Expect = 1.426e-12 Identity = 27/59 (45.76%), Postives = 32/59 (54.24%), Query Frame = -3 Query: 491 EYTKKPMEFFQRMLDETNIQKQTFKKLLAVTPIALLALYHVSYRITKYIK---IGELLI 658 EY K +FF+ L QK FK L+V ALLA Y VSY+I + K IGE LI Sbjct: 207 EYVNKSRQFFESKLKSYEKQKLVFKNTLSVNEKALLASYKVSYQIARCKKPHTIGEELI 265 The following BLAST results are available for this feature:
BLAST of SMED30030947 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of SMED30030947 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30030947 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30030947 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30030947 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30030947 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of SMED30030947 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of SMED30030947 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30030947 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of SMED30030947 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30030947 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30030947 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30030947 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of SMED30030947 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30030947 ID=SMED30030947|Name=SMED30030947|organism=Schmidtea mediterranea sexual|type=transcript|length=1980bpback to top protein sequence of SMED30030947-orf-1 >SMED30030947-orf-1 ID=SMED30030947-orf-1|Name=SMED30030947-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=124bp RTDGENIHLFCGSLGDTFREKYICAKIDHHSRYISLTPISRQDENTIKKVback to top protein sequence of SMED30030947-orf-2 >SMED30030947-orf-2 ID=SMED30030947-orf-2|Name=SMED30030947-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=133bp MKILMLIEVVINAKLRQSFQEKAIQFIIFIVRFTSVNIDGLEKPMCLLYSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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