SMED30030913

Overview
NameSMED30030913
Smed IDSMED30030913
Length (bp)1178
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30030913

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30030913SMESG000034462.1 SMESG000034379.1 SmedASXL_030826SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
nervous systemSMED30030913SMESG000034462.1 SMESG000034379.1 dd_Smed_v4_47882_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30030913SMESG000034462.1 SMESG000034379.1 dd_Smed_v4_47882_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30030913SMESG000034462.1 SMESG000034379.1 Contig23625newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
head regionSMED30030913SMESG000034462.1 SMESG000034379.1 dd_Smed_v6_47882_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30030913 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.018250:9315..10492 +5791
v31.009789:18462..19637 -5747
v31.017181:14188..15363 +5693
v31.020729:5199..6377 +5163
Homology
[Close]
BLAST of SMED30030913 vs. TrEMBL
Match: A0A0L8H6T8 (Uncharacterized protein OS=Octopus bimaculoides OX=37653 GN=OCBIM_22021012mg PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.857e-11
Identity = 68/239 (28.45%), Postives = 114/239 (47.70%), Query Frame = 3 
Query:   63 MRCGSNAF--RKNLIYFVMVNNIC--YTPT-AASAQSTLISNENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNF-RSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEI 761
            + C S A   +   I +  V+++C  Y+P    +  ST  SNE  + R +  + +  +  G+G       +N   P  + V++  G +  NF R  +LD WS L      + I +    +V  ++   N++  + SWF L+  L S PW    L  +  N FS+ G     R F++ S YGGC  D G ++I +A  +C Y      QL+ YPQ++Y+ +N    L++ N  +  S+ I
Sbjct:   63 LECASIALNSQSEFITYNNVSHVCKNYSPKNLMTVVSTNDSNEISFYRNTQWIKVYALSMGAGSKVYDSFANKGSPSSWNVEKCIGTFCPNFFRHPILDVWSHLPIDEAKLVIYENQTAVVNMVFDGRNTT--LESWFSLE-TLKSSPWPD--LHQQPVNIFSLFG--AAIRRFYVSSEYGGCVGDWGWMLIAEARHMCYYE-----QLSSYPQLLYSKRNSR-TLWDSNQGKGDSIAI 288
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BLAST of SMED30030913 vs. TrEMBL
Match: C3ZNM0 (Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_100697 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.637e-9
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 3 
Query:  312 SMNFRSILLDEWSTLRPSYMNVTIKD-VDDVIVGWLYFVVNSSDNISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYA 698
            + +F+S L+ EW TL    +  ++        V  L F    +  +S WF  + +++S PW    LKT+T N FSI+GD T  RSFFI+  YGGC  D G L++ D    C     W  +  + P I+++
Sbjct:   61 AAHFKSPLVQEWETLGIQLVKGSLYSYRQGTEVRELIFDGRDTTKVS-WFSHERLISS-PW--TDLKTETNNIFSIIGDSTYHRSFFINRNYGGCEKDAGWLVVPDGGTAC----GWETRDKRVPHILFS 182
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BLAST of SMED30030913 vs. TrEMBL
Match: C3YAE7 (Uncharacterized protein OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_72548 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.268e-8
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = 3 
Query:  318 NFRSILLDEWSTLRPSYMNVTI----KDVDDVIVGWLYFVVNSSDNISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEY 647
            ++RS  LD WS+L  + + VT+    +   D+I     F  +  D + +WF  D +L+S PW    LKT    FFSI GD    R FFIH  YGGC  D G L++ D    C +
Sbjct:  324 HYRSPDLDRWSSLHVTKVKVTLVAQHQHTRDII-----FNAHGCD-MDNWFTKDRLLSS-PWTD--LKTAPTKFFSIRGDNQYNRRFFIHRSYGGCANDRGWLIVLDPGAECPW 428
[Close]
BLAST of SMED30030913 vs. TrEMBL
Match: K1PKR8 (Uncharacterized protein OS=Crassostrea gigas OX=29159 GN=CGI_10014564 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.561e-7
Identity = 46/171 (26.90%), Postives = 82/171 (47.95%), Query Frame = 3 
Query:  210 LLRIVNGSGV-YPPGYLSNMIYPPQYE--VKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDN-ISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNG 710
            + R   G G+     +L N+I P   +  +  +  + S ++R+  +D W +L  S + + +      +    +   +  D+ I +WF    +LNS  W +N+  +  YN+FSI G     RSFF++++Y  C +D G +++ D P  C     W    NK PQ  Y+  +G
Sbjct:   94 MFRATPGVGLSVKDSWLGNIIPPTAQDTCISMKNTSCSTHYRNPRVDIWESLSISQVTLELYKHGSKVA---FIAFDGKDSTIENWFNSSRILNS-SW-SNVTPSTIYNYFSIKGHSECSRSFFVNTHYHNCSVDTGYMVVVDPPTAC---CPWENVPNK-PQFFYSAADG 255
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BLAST of SMED30030913 vs. TrEMBL
Match: A0A0L8I848 (Uncharacterized protein (Fragment) OS=Octopus bimaculoides OX=37653 GN=OCBIM_22028930mg PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.977e-7
Identity = 36/121 (29.75%), Postives = 67/121 (55.37%), Query Frame = 3 
Query:  306 NYSMN-FRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLF-RSFFIHSYYGGCHIDVGVLMIFDAPD--VCEYGLA 656
            NYS++ F+S L++ W++L    +   ++  + ++V  ++       N  +WF L+ ++ S PW    LKT   + FSI+G+ +++ R F+I+  YG C  DVG L++ D     VC +  +
Sbjct:   36 NYSLSVFKSSLIENWASLHVQEVKFVLEQDNQIVVSMIF--DGKQSNKMNWFCLNRLIKSSPWTD--LKTNKPSIFSIIGEDSIYKRRFYINKEYGRCKKDVGWLLVRDDKKGMVCSFAAS 152
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BLAST of SMED30030913 vs. Planmine SMEST
Match: SMESG000034462.1 (SMESG000034462.1)

HSP 1 Score: 468.774 bits (1205), Expect = 8.471e-168
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 3 
Query:  111 MVNNICYTPTAASAQSTLISNENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIYS 797
            MVNNICYTPTAASAQSTLISNENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDN+LNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIYS
Sbjct:    1 MVNNICYTPTAASAQSTLISNENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDNLLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIYS 229
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BLAST of SMED30030913 vs. Planmine SMEST
Match: SMESG000034379.1 (SMESG000034379.1)

HSP 1 Score: 458.759 bits (1179), Expect = 7.915e-164
Identity = 223/229 (97.38%), Postives = 225/229 (98.25%), Query Frame = 3 
Query:  111 MVNNICYTPTAASAQSTLISNENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIYS 797
            MVNNICYTPTAASAQSTLISNENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVN+SDNISSWFIL N+LNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGC  DVGVLMIFDAPD CEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIYS
Sbjct:    1 MVNNICYTPTAASAQSTLISNENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNASDNISSWFILGNLLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCDADVGVLMIFDAPDACEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIYS 229
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BLAST of SMED30030913 vs. Planmine SMEST
Match: SMESG000076267.1 (SMESG000076267.1)

HSP 1 Score: 298.13 bits (762), Expect = 5.963e-100
Identity = 148/264 (56.06%), Postives = 182/264 (68.94%), Query Frame = 3 
Query:    6 KLFLAFSFATGMMVDPTGYMRCGSNAFRKNLIYFVMVNNICYTPTAASAQSTLIS-NENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIY 794
            ++F+ F + +G   DP   MRCG  AF +N+IYF MVN  CY P A SAQ T  S  + IY+R+ N +T+LRIVNGSGVYPP +LS +  P  Y+VK+ + NYS NFRS++LDEWSTLRPS MNVTI+ V+  IVGWL F V++ DNI SWF L N+L+SFPWD N+LK   Y FFS+ GDR   RSFFI   Y GC  D GVLM+FD  D C Y L WI     YPQI YAV NG PA++ + +R AKSLEIIG Y  ++ IY
Sbjct:    5 EIFVLFVWFSGKKGDPLDEMRCGLKAFDRNIIYFAMVNKSCYIPKAISAQPTQSSPTKIIYQRIENTITVLRIVNGSGVYPPDFLSKLSNPSTYKVKDIQNNYSENFRSVILDEWSTLRPSGMNVTIRAVNKAIVGWLNFRVSAQDNIISWFTLGNLLDSFPWDINVLKNSLYKFFSVTGDRKGLRSFFISIRYNGCTGDAGVLMMFDGSDACSYNLKWITSAINYPQIFYAVLNGSPAIFYNYIRSAKSLEIIGSYPSDILIY 268
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BLAST of SMED30030913 vs. Planmine SMEST
Match: SMESG000034377.1 (SMESG000034377.1)

HSP 1 Score: 268.085 bits (684), Expect = 5.548e-88
Identity = 138/280 (49.29%), Postives = 177/280 (63.21%), Query Frame = 3 
Query:    6 KLFLAFSFATGMMVDPTGYMRCGSNAFRKNLIYFVMVNNICYTPTAASAQSTLISN-----------------ENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIY 794
            K F+  + + G   D   +  C    F+K L YF +V+N+C+TPT  +  +                      + +YR++ N L LLRIVNGSGVYPP YL+N   P  Y VK+ K N+S NFRSILLD+W   +PS +NVTI+DV DV VGWLYF V   DNI SWF   N+++SFPW+ N+LK  TYN+FSI GD+T  RSF ++S YGGC  DVGVLM+FD  +VC Y L W+    +YPQIIYA  NG P+ YN+ VR AKSLEIIG Y  N+ I+
Sbjct:    5 KFFILLALSVGFG-DSVEFADCILQTFQKKLTYFSIVDNLCFTPTQPTQPTKSTQPTQSTQTTQSTQSTFTTTKAVYRKMGNTLILLRIVNGSGVYPPDYLANTTNPSPYGVKDYKRNFSENFRSILLDDWKRYQPSNLNVTIRDVSDVEVGWLYFSVFPKDNILSWFASTNLIDSFPWNINVLKNSTYNYFSINGDKTYNRSFLVNSQYGGCPNDVGVLMVFDGHNVCNYQLMWLTSATEYPQIIYAELNGSPSNYNNYVRVAKSLEIIGTYPSNIGIF 283
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BLAST of SMED30030913 vs. Planmine SMEST
Match: SMESG000076443.1 (SMESG000076443.1)

HSP 1 Score: 267.7 bits (683), Expect = 9.036e-88
Identity = 138/280 (49.29%), Postives = 177/280 (63.21%), Query Frame = 3 
Query:    6 KLFLAFSFATGMMVDPTGYMRCGSNAFRKNLIYFVMVNNICYTPTAASAQSTLISN-----------------ENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERKGNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISSWFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHIDVGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKSLEIIGVYSQNVEIY 794
            K F+  + + G   D   +  C    F+K L YF +V+N+C+TPT  +  +                      + +YR++ N L LLRIVNGSGVYPP YL+N   P  Y VK+ K N+S NFRSILLD+W   +PS +NVTI+DV DV VGWLYF V   DNI SWF   N+++SFPW+ N+LK  TYN+FSI GD+T  RSF ++S YGGC  DVGVLM+FD  +VC Y L W+    +YPQIIYA  NG P+ YN+ VR AKSLEIIG Y  N+ I+
Sbjct:    5 KFFILLALSVGFG-DSVEFADCILQTFQKKLTYFSIVDNLCFTPTQPTQPTKSTQPTQSTQTTQSTQSTFTTTKAVYRKMGNTLILLRIVNGSGVYPPDYLANTTNPSPYGVKDYKRNFSENFRSILLDDWKRYQPSNLNVTIRDVSDVEVGWLYFSVFPKDNILSWFASTNLIDSFPWNINVLKNSTYNYFSINGDKTYNRSFLVNSQYGGCPNDVGVLMMFDGHNVCNYRLTWLTSATEYPQIIYAELNGSPSNYNNYVRVAKSLEIIGTYPSNIGIF 283
The following BLAST results are available for this feature:
BLAST of SMED30030913 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0L8H6T81.857e-1128.45Uncharacterized protein OS=Octopus bimaculoides OX... [more]
C3ZNM04.637e-933.85Uncharacterized protein OS=Branchiostoma floridae ... [more]
C3YAE76.268e-837.72Uncharacterized protein OS=Branchiostoma floridae ... [more]
K1PKR81.561e-726.90Uncharacterized protein OS=Crassostrea gigas OX=29... [more]
A0A0L8I8481.977e-729.75Uncharacterized protein (Fragment) OS=Octopus bima... [more]
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BLAST of SMED30030913 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030913 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000034462.18.471e-16899.56SMESG000034462.1[more]
SMESG000034379.17.915e-16497.38SMESG000034379.1[more]
SMESG000076267.15.963e-10056.06SMESG000076267.1[more]
SMESG000034377.15.548e-8849.29SMESG000034377.1[more]
SMESG000076443.19.036e-8849.29SMESG000076443.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30030913 ID=SMED30030913|Name=SMED30030913|organism=Schmidtea mediterranea sexual|type=transcript|length=1178bp
TTTTGAAATTATTTCTCGCGTTTTCATTCGCAACCGGGATGATGGTTGAC
CCTACAGGTTACATGAGATGCGGCTCTAACGCCTTCAGGAAGAATTTAAT
ATATTTCGTAATGGTCAACAATATCTGTTACACTCCAACGGCAGCATCAG
CACAGTCAACCCTCATATCAAATGAAAATATCTATAGGAGAGTCAGCAAC
ATATTGACCTTGCTGAGAATCGTCAATGGAAGCGGTGTTTACCCCCCTGG
TTATCTATCAAATATGATCTACCCGCCCCAATATGAAGTGAAAGAGAGAA
AAGGTAATTATTCAATGAACTTCAGGAGCATCCTTCTAGATGAATGGAGT
ACCCTGCGGCCTAGTTATATGAATGTAACAATTAAAGATGTTGATGATGT
GATTGTTGGGTGGCTATATTTTGTTGTTAATTCCAGTGACAATATCTCGT
CATGGTTTATTCTCGACAATGTGCTGAATTCTTTTCCATGGGATACAAAT
ATGTTGAAAACTAAAACTTATAATTTCTTTAGTATAGTCGGCGACAGAAC
ATTATTTAGATCATTTTTTATACATTCTTATTATGGGGGGTGCCACATTG
ATGTTGGGGTTTTGATGATATTTGATGCTCCAGATGTATGCGAATACGGA
CTGGCATGGATTGTTCAATTAAACAAATATCCCCAAATAATATACGCTGT
GAAGAACGGGATGCCAGCACTATACAATGATAATGTCCGACAGGCAAAAT
CGCTGGAAATTATTGGAGTATACTCACAAAATGTCGAAATATATTCTTGA
TTTAAATAAACCATTTGTTATTATTTCACTGATGAATGAATTTTAGAAGA
TTCAGTTCCGTCTATTAATATAAGACAATCAATTCATAGATTAATCGATA
ACACACCATTTCCATATTGAATATGCTATAAGCAGACAATTTGTACATCA
TACTCATGTGATCTCATTTTGGTTTCATTGAAAATATGTAGATGCTTCAT
TAACTCAAGGTTTAGTACTGATTTGTCTGTTTATAAACGTCGGTTCTTCA
TGATATGTTAAATAGACACTTATAGTTGTTCCTTGGTGTGACATTGTCAG
CAATTGTTATCTATGTATGCCTCGGTTGTTGTTCACATTTTTATCTGTTT
GAAGTGGATCGAATTTGGAAATGATGTG
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protein sequence of SMED30030913-orf-1

>SMED30030913-orf-1 ID=SMED30030913-orf-1|Name=SMED30030913-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=266bp
LKLFLAFSFATGMMVDPTGYMRCGSNAFRKNLIYFVMVNNICYTPTAASA
QSTLISNENIYRRVSNILTLLRIVNGSGVYPPGYLSNMIYPPQYEVKERK
GNYSMNFRSILLDEWSTLRPSYMNVTIKDVDDVIVGWLYFVVNSSDNISS
WFILDNVLNSFPWDTNMLKTKTYNFFSIVGDRTLFRSFFIHSYYGGCHID
VGVLMIFDAPDVCEYGLAWIVQLNKYPQIIYAVKNGMPALYNDNVRQAKS
LEIIGVYSQNVEIYS*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..12
score: 0.564