60S ribosomal protein L27

Overview
Name60S ribosomal protein L27
Smed IDSMED30030908
Length (bp)545
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of 60S ribosomal protein L27 (SMED30030908) t-SNE clustered cells

Violin plots show distribution of expression levels for 60S ribosomal protein L27 (SMED30030908) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of 60S ribosomal protein L27 (SMED30030908) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for 60S ribosomal protein L27 (SMED30030908) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30030908

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30030908h1SMcG0002486 SmedASXL_061262SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30030908h1SMcG0002486 Contig520GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30030908h1SMcG0002486 Contig37587newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30030908h1SMcG0002486 Contig37587uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30030908h1SMcG0002763 Contig520GPL15192PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynxSMED30030908h1SMcG0002486 dd_Smed_v4_200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30030908h1SMcG0002486 dd_Smed_v4_200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30030908h1SMcG0002486 dd_Smed_v4_200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30030908h1SMcG0002486 dd_Smed_v4_200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30030908h1SMcG0002486 dd_Smed_v4_200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30030908h1SMcG0002486 dd_Smed_v4_200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30030908h1SMcG0002486 dd_Smed_v4_200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30030908h1SMcG0002486 dd_Smed_v4_200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30030908h1SMcG0002486 dd_Smed_v4_200_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30030908h1SMcG0002486 dd_Smed_v6_200_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Human
Match: RPL27 (ribosomal protein L27 [Source:HGNC Symbol;Acc:HGNC:10328])

HSP 1 Score: 106.301 bits (264), Expect = 2.840e-29
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRY+GRKAVIVK+ D+GTSD+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Human
Match: RPL27 (ribosomal protein L27 [Source:HGNC Symbol;Acc:HGNC:10328])

HSP 1 Score: 106.301 bits (264), Expect = 2.840e-29
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRY+GRKAVIVK+ D+GTSD+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Human
Match: RPL27 (ribosomal protein L27 [Source:HGNC Symbol;Acc:HGNC:10328])

HSP 1 Score: 106.301 bits (264), Expect = 2.840e-29
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRY+GRKAVIVK+ D+GTSD+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Human
Match: RPL27 (ribosomal protein L27 [Source:HGNC Symbol;Acc:HGNC:10328])

HSP 1 Score: 86.2705 bits (212), Expect = 2.344e-21
Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 1 
Query:  151 AGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            AGR  +  K+ D+GTSD+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:   27 AGRAGLEFKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 144
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Celegans
Match: rpl-27 (60S ribosomal protein L27 [Source:UniProtKB/Swiss-Prot;Acc:P91914])

HSP 1 Score: 98.9821 bits (245), Expect = 7.495e-27
Identity = 70/128 (54.69%), Postives = 98/128 (76.56%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++  G+YAGRKAV+VK  DEG SD++Y HA++ GI  YP +VTK MGKKKI KR+K+KPF+K+++Y HLL TR+++D+  + T +NK+  K    K+ A  E KSK EE+YKTGKN+WF+ KLRF
Sbjct:    9 KVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Celegans
Match: rpl-27 (60S ribosomal protein L27 [Source:UniProtKB/Swiss-Prot;Acc:P91914])

HSP 1 Score: 98.9821 bits (245), Expect = 7.495e-27
Identity = 70/128 (54.69%), Postives = 98/128 (76.56%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++  G+YAGRKAV+VK  DEG SD++Y HA++ GI  YP +VTK MGKKKI KR+K+KPF+K+++Y HLL TR+++D+  + T +NK+  K    K+ A  E KSK EE+YKTGKN+WF+ KLRF
Sbjct:    9 KVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Fly
Match: RpL27 (gene:FBgn0039359 transcript:FBtr0331360)

HSP 1 Score: 93.9745 bits (232), Expect = 8.860e-25
Identity = 65/129 (50.39%), Postives = 93/129 (72.09%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTI-DLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            +IV++ +GRYAGRKA+IVK++D+GT +K +GHALV GI  YP++VTK MGK K+ K+SK+KPF+K +NYNHL+ TR+T  D+       +    KD   +K  + + + K E  YK GKN+WF++KLRF
Sbjct:    9 KIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYPRKVTKKMGKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKL--SPKDLKDPVKRKTHRFQTRVKFESVYKEGKNKWFFQKLRF 135
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Fly
Match: RpL27 (gene:FBgn0039359 transcript:FBtr0331362)

HSP 1 Score: 93.9745 bits (232), Expect = 8.860e-25
Identity = 65/129 (50.39%), Postives = 93/129 (72.09%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTI-DLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            +IV++ +GRYAGRKA+IVK++D+GT +K +GHALV GI  YP++VTK MGK K+ K+SK+KPF+K +NYNHL+ TR+T  D+       +    KD   +K  + + + K E  YK GKN+WF++KLRF
Sbjct:    9 KIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYPRKVTKKMGKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKL--SPKDLKDPVKRKTHRFQTRVKFESVYKEGKNKWFFQKLRF 135
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Fly
Match: RpL27 (gene:FBgn0039359 transcript:FBtr0331361)

HSP 1 Score: 93.9745 bits (232), Expect = 8.860e-25
Identity = 65/129 (50.39%), Postives = 93/129 (72.09%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTI-DLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            +IV++ +GRYAGRKA+IVK++D+GT +K +GHALV GI  YP++VTK MGK K+ K+SK+KPF+K +NYNHL+ TR+T  D+       +    KD   +K  + + + K E  YK GKN+WF++KLRF
Sbjct:    9 KIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYPRKVTKKMGKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKL--SPKDLKDPVKRKTHRFQTRVKFESVYKEGKNKWFFQKLRF 135
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Fly
Match: RpL27 (gene:FBgn0039359 transcript:FBtr0084932)

HSP 1 Score: 93.9745 bits (232), Expect = 8.860e-25
Identity = 65/129 (50.39%), Postives = 93/129 (72.09%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTI-DLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            +IV++ +GRYAGRKA+IVK++D+GT +K +GHALV GI  YP++VTK MGK K+ K+SK+KPF+K +NYNHL+ TR+T  D+       +    KD   +K  + + + K E  YK GKN+WF++KLRF
Sbjct:    9 KIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYPRKVTKKMGKNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKL--SPKDLKDPVKRKTHRFQTRVKFESVYKEGKNKWFFQKLRF 135
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Zebrafish
Match: rpl27 (ribosomal protein L27 [Source:NCBI gene;Acc:325618])

HSP 1 Score: 107.457 bits (267), Expect = 7.278e-30
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ D+GT+D+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Zebrafish
Match: rpl27 (ribosomal protein L27 [Source:NCBI gene;Acc:325618])

HSP 1 Score: 107.457 bits (267), Expect = 7.278e-30
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ D+GT+D+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Xenopus
Match: ninj1 (ninjurin 1 [Source:Xenbase;Acc:XB-GENE-959247])

HSP 1 Score: 106.301 bits (264), Expect = 3.028e-29
Identity = 80/128 (62.50%), Postives = 105/128 (82.03%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ D+GTSD+ Y HALV GI  YP++VT +MGKK+IAKRSKIK FVK+ NYNHL+ TR+++D+ L+   VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYAGRKAVIVKNVDDGTSDRQYSHALVAGIDRYPRKVTATMGKKRIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKAVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Mouse
Match: Rpl27 (ribosomal protein L27 [Source:MGI Symbol;Acc:MGI:98036])

HSP 1 Score: 106.301 bits (264), Expect = 1.950e-29
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRY+GRKAVIVK+ D+GTSD+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Mouse
Match: Rpl27 (ribosomal protein L27 [Source:MGI Symbol;Acc:MGI:98036])

HSP 1 Score: 106.301 bits (264), Expect = 1.950e-29
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRY+GRKAVIVK+ D+GTSD+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. UniProt/SwissProt
Match: sp|Q7ZV82|RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio OX=7955 GN=rpl27 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 5.494e-29
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ D+GT+D+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. UniProt/SwissProt
Match: sp|P61359|RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes OX=109280 GN=rpl27 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.237e-29
Identity = 81/128 (63.28%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ D+GT+D+ Y HALV GI  YP++VT  MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K  A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. UniProt/SwissProt
Match: sp|Q90YU1|RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus OX=7998 GN=rpl27 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.087e-28
Identity = 80/128 (62.50%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ D+GT+D+ Y HALV GI  YP++VT +MGKKK+AKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. UniProt/SwissProt
Match: sp|Q9XSU7|RL27_CANLF (60S ribosomal protein L27 OS=Canis lupus familiaris OX=9615 GN=RPL27 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.110e-28
Identity = 82/128 (64.06%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRY+GRKAVIVK+ D+GTSD+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EEKYKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. UniProt/SwissProt
Match: sp|P61354|RL27_RAT (60S ribosomal protein L27 OS=Rattus norvegicus OX=10116 GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.364e-28
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRY+GRKAVIVK+ D+GTSD+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. TrEMBL
Match: Q6JWX4 (60S ribosomal protein L27 OS=Oikopleura dioica OX=34765 GN=RL27 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.747e-29
Identity = 78/128 (60.94%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V+L AGRYAGRKA+IVK  D+G  D+ YGHALV GI  YP++VTK MGKK+I KR +IKPFVK+INYNHL+ TR+++D+ LN T VNK+  KDK  K+ A    K + EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVILLAGRYAGRKALIVKQQDDGVQDRQYGHALVAGIARYPRKVTKDMGKKRITKRCRIKPFVKVINYNHLMPTRYSVDVPLNKTVVNKEGIKDKAGKRKAVESVKLQFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. TrEMBL
Match: A0A1B6HSV9 (60S ribosomal protein L27 OS=Homalodisca liturata OX=320908 GN=g.9511 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.454e-28
Identity = 79/129 (61.24%), Postives = 104/129 (80.62%), Query Frame = 1 
Query:  118 NRIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            N++V++ +GRYAG+KAVIVK++DEGTSDK YGHALV GI  YP++V K MGKKKI KRSKIKPF+K++NYNHL+ TR+T+D  L N K+N    KD   KK  + + + +LE+KYKTGKN+WF++KLRF
Sbjct:    8 NKVVLVLSGRYAGKKAVIVKNFDEGTSDKQYGHALVAGIDRYPRKVHKRMGKKKIHKRSKIKPFLKVMNYNHLMPTRYTLD--LENEKINHKDLKDPMKKKKLRFKVRVRLEDKYKTGKNKWFFQKLRF 134
[Close]
BLAST of 60S ribosomal protein L27 vs. TrEMBL
Match: A0A553P9W1 (60S ribosomal protein L27 OS=Tigriopus californicus OX=6832 GN=TCAL_08319 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-28
Identity = 72/128 (56.25%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ +GR+AGRKAVIVK  DEGT+DK +GHALV GI  YP+ VTK M KKKI  RSK+KPF+K++NYNHL+ TR++++LG +   +NK+  KD   KK A+   +++ EE+YK+GKNRWF++KLRF
Sbjct:    9 KVVLVLSGRFAGRKAVIVKPTDEGTADKPFGHALVAGIDRYPRMVTKRMSKKKIKMRSKVKPFLKVVNYNHLMPTRYSVELGFDKANLNKETLKDPMKKKKARNMVRTQFEERYKSGKNRWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. TrEMBL
Match: S4RNM4 (60S ribosomal protein L27 OS=Petromyzon marinus OX=7757 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.489e-28
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ DEGT+D+ YGHALV GI  YP++VT  MGKKK+AKRSK+K FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYAGRKAVIVKNQDEGTADRPYGHALVAGIDRYPRKVTARMGKKKLAKRSKVKSFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. TrEMBL
Match: A0A4Y2KUM3 (60S ribosomal protein L27 OS=Araneus ventricosus OX=182803 GN=Rpl27 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.795e-28
Identity = 76/128 (59.38%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++  GRYAGRKAV+VK+ DEGTSDK YGHALV GI  YP++VT+ MGKKK+ KRSKIKPFVK++NYNHL+ TR+ +D+  + + VNK+  KD   ++ A+ + K+K EE+YKTGK+RWF++KLRF
Sbjct:    9 KVVLVLNGRYAGRKAVVVKNNDEGTSDKPYGHALVAGIDRYPRKVTRRMGKKKLEKRSKIKPFVKVLNYNHLMPTRYMVDIAFDKSIVNKEVLKDPSKRRKARRDVKAKFEERYKTGKSRWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Cavefish
Match: rpl27 (ribosomal protein L27 [Source:NCBI gene;Acc:103038111])

HSP 1 Score: 105.145 bits (261), Expect = 4.373e-29
Identity = 80/128 (62.50%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ D+GT+D+ Y HALV GI  YP++VT +MGKK+IAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVMVLAGRYAGRKAVIVKNVDDGTTDRPYSHALVSGIDRYPRKVTTNMGKKRIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Sea Lamprey
Match: rpl27 (ribosomal protein L27 [Source:NCBI gene;Acc:325618])

HSP 1 Score: 111.309 bits (277), Expect = 4.217e-32
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ DEGT+D+ YGHALV GI  YP++VT  MGKKK+AKRSK+K FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVLVLAGRYAGRKAVIVKNQDEGTADRPYGHALVAGIDRYPRKVTARMGKKKLAKRSKVKSFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Yeast
Match: RPL27B (Ribosomal 60S subunit protein L27B; homologous to mammalian ribosomal protein L27, no bacterial homolog; RPL27B has a paralog, RPL27A, that arose from the whole genome duplication [Source:SGD;Acc:S000002879])

HSP 1 Score: 100.138 bits (248), Expect = 6.379e-28
Identity = 64/130 (49.23%), Postives = 91/130 (70.00%), Query Frame = 1 
Query:  115 GNRIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
              ++ V+  GRYAG+K VIVK +DEG+    +GHALV GI  YP +VTK  G KK+AKR+KIKPF+K++NYNHLL TR+T+D+    + V+ + F+    ++ AK   K   EE+++ GKN+WF+ KLRF
Sbjct:    7 AGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Yeast
Match: RPL27A (Ribosomal 60S subunit protein L27A; homologous to mammalian ribosomal protein L27, no bacterial homolog; RPL27A has a paralog, RPL27B, that arose from the whole genome duplication [Source:SGD;Acc:S000001052])

HSP 1 Score: 98.9821 bits (245), Expect = 1.760e-27
Identity = 64/130 (49.23%), Postives = 91/130 (70.00%), Query Frame = 1 
Query:  115 GNRIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
              ++ V+  GRYAG+K VIVK +DEG+    +GHALV GI  YP +VTK  G KK+AKR+KIKPF+K++NYNHLL TR+T+D+    + V+ + F+    ++ AK   K   EE+++ GKN+WF+ KLRF
Sbjct:    7 AGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Nematostella
Match: EDO42969 (60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:A7S072])

HSP 1 Score: 106.686 bits (265), Expect = 5.353e-30
Identity = 77/128 (60.16%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++  GRYAG+KA+I+K+YD+G+SDK YGHALV G+  YP +VTK MGKK+ AKRSK+KPFVK+ NYNHL+ TR+++D+ L+   VNKD F+D   KK A  E KS LEE+YK+GKN+WF++KLRF
Sbjct:    9 KVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKKALREVKSTLEERYKSGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Ensembl Medaka
Match: rpl27 (ribosomal protein L27 [Source:NCBI gene;Acc:101168542])

HSP 1 Score: 107.071 bits (266), Expect = 7.948e-30
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:  121 RIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            ++V++ AGRYAGRKAVIVK+ D+GT+D+ Y HALV GI  YP++VT +MGKKKIAKRSKIK FVK+ NYNHL+ TR+++D+ L+ T VNKD F+D   K+ A+ EAK K EE+YKTGKN+WF++KLRF
Sbjct:    9 KVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTTTMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
[Close]
BLAST of 60S ribosomal protein L27 vs. Planmine SMEST
Match: SMESG000045074.1 (SMESG000045074.1)

HSP 1 Score: 161.77 bits (408), Expect = 2.239e-51
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:  115 GNRIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTXXXXXXXXXXXXXXXPFVKIINYNHLLTTRFTIDLGLNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKNRWFYRKLRF 504
            GNRIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTKSMGKKKIAKRSKIKPFVKIINYNHLLTTRFTIDLGLNNTKVNKDCFKDKKSKKVAKAEAKSKLEEKYKTGKNRWFYRKLRF
Sbjct:    6 GNRIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPKEVTKSMGKKKIAKRSKIKPFVKIINYNHLLTTRFTIDLGLNNTKVNKDCFKDKKSKKVAKAEAKSKLEEKYKTGKNRWFYRKLRF 135
The following BLAST results are available for this feature:
BLAST of 60S ribosomal protein L27 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RPL272.840e-2963.28ribosomal protein L27 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL272.840e-2963.28ribosomal protein L27 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL272.840e-2963.28ribosomal protein L27 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL272.344e-2161.02ribosomal protein L27 [Source:HGNC Symbol;Acc:HGNC... [more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl-277.495e-2754.6960S ribosomal protein L27 [Source:UniProtKB/Swiss... [more]
rpl-277.495e-2754.6960S ribosomal protein L27 [Source:UniProtKB/Swiss... [more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RpL278.860e-2550.39gene:FBgn0039359 transcript:FBtr0331360[more]
RpL278.860e-2550.39gene:FBgn0039359 transcript:FBtr0331362[more]
RpL278.860e-2550.39gene:FBgn0039359 transcript:FBtr0331361[more]
RpL278.860e-2550.39gene:FBgn0039359 transcript:FBtr0084932[more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpl277.278e-3063.28ribosomal protein L27 [Source:NCBI gene;Acc:325618... [more]
rpl277.278e-3063.28ribosomal protein L27 [Source:NCBI gene;Acc:325618... [more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ninj13.028e-2962.50ninjurin 1 [Source:Xenbase;Acc:XB-GENE-959247][more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Rpl271.950e-2963.28ribosomal protein L27 [Source:MGI Symbol;Acc:MGI:9... [more]
Rpl271.950e-2963.28ribosomal protein L27 [Source:MGI Symbol;Acc:MGI:9... [more]
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BLAST of 60S ribosomal protein L27 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q7ZV82|RL27_DANRE5.494e-2963.2860S ribosomal protein L27 OS=Danio rerio OX=7955 G... [more]
sp|P61359|RL27_HIPCM9.237e-2963.2860S ribosomal protein L27 OS=Hippocampus comes OX=... [more]
sp|Q90YU1|RL27_ICTPU1.087e-2862.5060S ribosomal protein L27 OS=Ictalurus punctatus O... [more]
sp|Q9XSU7|RL27_CANLF1.110e-2864.0660S ribosomal protein L27 OS=Canis lupus familiari... [more]
sp|P61354|RL27_RAT1.364e-2863.2860S ribosomal protein L27 OS=Rattus norvegicus OX=... [more]
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BLAST of 60S ribosomal protein L27 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q6JWX41.747e-2960.9460S ribosomal protein L27 OS=Oikopleura dioica OX=... [more]
A0A1B6HSV94.454e-2861.2460S ribosomal protein L27 OS=Homalodisca liturata ... [more]
A0A553P9W15.143e-2856.2560S ribosomal protein L27 OS=Tigriopus californicu... [more]
S4RNM45.489e-2863.2860S ribosomal protein L27 OS=Petromyzon marinus OX... [more]
A0A4Y2KUM35.795e-2859.3860S ribosomal protein L27 OS=Araneus ventricosus O... [more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl274.373e-2962.50ribosomal protein L27 [Source:NCBI gene;Acc:103038... [more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl274.217e-3263.28ribosomal protein L27 [Source:NCBI gene;Acc:325618... [more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 2
Match NameE-valueIdentityDescription
RPL27B6.379e-2849.23Ribosomal 60S subunit protein L27B; homologous to ... [more]
RPL27A1.760e-2749.23Ribosomal 60S subunit protein L27A; homologous to ... [more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO429695.353e-3060.1660S ribosomal protein L27 [Source:UniProtKB/TrEMB... [more]
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BLAST of 60S ribosomal protein L27 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl277.948e-3063.28ribosomal protein L27 [Source:NCBI gene;Acc:101168... [more]
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BLAST of 60S ribosomal protein L27 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000045074.12.239e-51100.00SMESG000045074.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30030908 ID=SMED30030908|Name=60S ribosomal protein L27|organism=Schmidtea mediterranea sexual|type=transcript|length=545bp
TTTCACTGAAATATCTAAATTTAGTTAATAAAGGCTTTTTATCAAATTTG
TTTTAATATTTATACCATCTTTAATAGTAAATTTTTAAAATCTTCAAAAA
TGAAGCTTATGAAAGGTAATCGTATTGTTGTTTTAACAGCAGGTAGATAC
GCTGGCCGTAAGGCTGTTATCGTCAAGTCTTACGATGAAGGAACATCAGA
TAAATCATACGGTCATGCCCTTGTTGTTGGAATTCGATCTTATCCTAAAG
AAGTAACTAAAAGTATGGGTAAGAAGAAAATCGCCAAGCGTTCAAAGATC
AAGCCATTTGTTAAAATTATTAACTATAACCATCTTTTAACAACCAGATT
TACCATTGACTTGGGTTTGAACAATACCAAAGTTAACAAAGATTGCTTCA
AGGATAAGAAATCCAAGAAGGTTGCTAAAGCTGAAGCAAAGTCCAAGTTG
GAAGAAAAGTACAAAACTGGAAAGAATAGATGGTTTTATAGAAAATTAAG
ATTTTAATTTTTCTAAATAAATTGTTTGGACTACTTAAAAAAAAA
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protein sequence of SMED30030908-orf-1

>SMED30030908-orf-1 ID=SMED30030908-orf-1|Name=SMED30030908-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=136bp
MKLMKGNRIVVLTAGRYAGRKAVIVKSYDEGTSDKSYGHALVVGIRSYPK
EVTKSMGKKKIAKRSKIKPFVKIINYNHLLTTRFTIDLGLNNTKVNKDCF
KDKKSKKVAKAEAKSKLEEKYKTGKNRWFYRKLRF*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR038655L27e_sf
IPR041991KOW_RPL27
IPR014722Rib_L2_dom2
IPR001141Ribosomal_L27e
IPR008991Translation_prot_SH3-like_sf
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: biological process
TermDefinition
GO:0006412translation
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0030529intracellular ribonucleoprotein complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001141Ribosomal protein L27ePFAMPF01777Ribosomal_L27ecoord: 52..135
e-value: 1.1E-30
score: 105.9
IPR001141Ribosomal protein L27ePANTHERPTHR1049760S RIBOSOMAL PROTEIN L27coord: 2..135
IPR038655Ribosomal protein L27e superfamilyGENE3DG3DSA:2.30.30.770coord: 1..135
e-value: 2.6E-58
score: 197.9
NoneNo IPR availablePANTHERPTHR10497:SF060S RIBOSOMAL PROTEIN L27coord: 2..135
NoneNo IPR availablePRODOMPD009396coord: 69..135
e-value: 2.0E-8
score: 136.0
IPR041991Eukaryotic Ribosomal Protein L27, KOW domainCDDcd06090KOW_RPL27coord: 5..87
e-value: 8.98234E-41
score: 128.84
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILYSSF50104Translation proteins SH3-like domaincoord: 1..135