Y-box protein

Overview


Name	Y-box protein
Smed ID	SMED30030829
Length (bp)	1052

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Y-box protein (SMED30030829) t-SNE clustered cells

Violin plots show distribution of expression levels for Y-box protein (SMED30030829) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Y-box protein (SMED30030829) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Y-box protein (SMED30030829) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30030829

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
gut	SMED30030829	h1SMcG0001488	Contig1715	GPL15192	PMID:23079596 Forsthoefel et al., 2012
intestinal phagocyte	SMED30030829	h1SMcG0001488	Contig1715	GPL15192	PMID:23079596 Forsthoefel et al., 2012
cephalic ganglia	SMED30030829	h1SMcG0001488	dd_Smed_v4_209_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parapharyngeal region	SMED30030829	h1SMcG0001488	dd_Smed_v4_209_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30030829	h1SMcG0001488	dd_Smed_v4_209_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30030829	h1SMcG0001488	dd_Smed_v4_209_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30030829	h1SMcG0001488	dd_Smed_v4_209_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
muscle cell	SMED30030829	h1SMcG0001488	dd_Smed_v4_209_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30030829	h1SMcG0001488	dd_Smed_v4_209_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchyma	SMED30030829	h1SMcG0001488	dd_Smed_v4_25682_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30030829	h1SMcG0001488	Contig54760	newmark_ests	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30030829	h1SMcG0001488	Contig54760	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
whole organism	SMED30030829	h1SMcG0001488	Contig55579	uc_Smed_v2	PMID:27612384 Roberts-Galbraith et al., 2016
whole organism	SMED30030829	h1SMcG0001488	Contig55579	newmark_ests	PMID:27612384 Roberts-Galbraith et al., 2016
epidermis	SMED30030829	h1SMcG0001488	dd_Smed_v4_209_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of Y-box protein vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 110.538 bits (275), Expect = 2.690e-27
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K+VL T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+  DG  V+GS YA
Sbjct:   83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 171

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BLAST of Y-box protein vs. Ensembl Human
Match: YBX3 (Y-box binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2428])

HSP 1 Score: 111.694 bits (278), Expect = 3.631e-27
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K+VL T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+  DG  V+GS YA
Sbjct:   83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 171

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BLAST of Y-box protein vs. Ensembl Human
Match: YBX1 (Y-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8014])

HSP 1 Score: 109.383 bits (272), Expect = 9.296e-27
Identity = 50/97 (51.55%), Postives = 71/97 (73.20%), Query Frame = 3

Query:   93 NATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            +A  A   K+V+ T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+   G  V+GS+YA 
Sbjct:   44 SAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 140

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BLAST of Y-box protein vs. Ensembl Human
Match: YBX2 (Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948])

HSP 1 Score: 107.457 bits (267), Expect = 9.858e-26
Identity = 49/108 (45.37%), Postives = 68/108 (62.96%), Query Frame = 3

Query:   57 ANNQEKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
             N    + G       +   K VL  ++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI ++NP    +SVG+GE ++FD+V+G KG EA NV+   G  VKGS YA
Sbjct:   67 GNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYA 174

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Query:   57 ANNQEKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
             N    + G       +   K VL  ++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI ++NP    +SVG+GE ++FD+V+G KG EA NV+   G  VKGS YA
Sbjct:   67 GNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYA 174

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BLAST of Y-box protein vs. Ensembl Celegans
Match: cey-1 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62213])

HSP 1 Score: 106.301 bits (264), Expect = 5.105e-27
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 3

Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            K V  T++ G VKWFNVK GYGF+ R D  EDIF+HQ+AI+ +NP+   +S+G+ EE+ FDIV+G+KG EAA+V+  DG  V+GS+YA
Sbjct:   14 KPVKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKGLEAASVTGPDGGPVQGSKYA 101

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BLAST of Y-box protein vs. Ensembl Celegans
Match: cey-2 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91306])

HSP 1 Score: 85.5001 bits (210), Expect = 7.543e-19
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 3

Query:   69 EKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDH-PRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEY 377
            E+I  +EE      K K  + T + GKVKW++V R YGF+ R+D  +DIF+HQ+AI KS  +    +++G+ EE+ FD+V+G  G EAANV+  +G  V GS Y
Sbjct:   47 ERIRLWEEE----QKSKTAITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNGPEAANVTGPNGDNVIGSRY 146

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BLAST of Y-box protein vs. Ensembl Celegans
Match: cey-3 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91398])

HSP 1 Score: 80.8777 bits (198), Expect = 2.816e-17
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 3

Query:   69 EKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHP-RKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQ 392
            E+I  +EE      K K VL   + GKVKW++V R YGF+ R D  +D+F+HQ+AI KS+ +    +++ + EE+ FD+V G  G EAANV+   G  V GS+Y  R+Q
Sbjct:   45 ERIRIWEEE----QKAKIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY--RHQ 147

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Query:   69 EKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHP-RKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQ 392
            E+I  +EE      K K VL   + GKVKW++V R YGF+ R D  +D+F+HQ+AI KS+ +    +++ + EE+ FD+V G  G EAANV+   G  V GS+Y  R+Q
Sbjct:   45 ERIRIWEEE----QKAKIVLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAANVTGPAGVNVSGSKY--RHQ 147

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BLAST of Y-box protein vs. Ensembl Celegans
Match: cey-4 (C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5EDV3])

HSP 1 Score: 80.8777 bits (198), Expect = 3.833e-17
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 3

Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRD---DNCEDIFIHQSAIVKSNP-DHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            K+V+ T + G VKWF+V+  YGFV RD   D  ED F+HQ+AI KS+      +++ + E + FDIV+G KG EAANV+  DG  V+GS +A
Sbjct:   82 KKVIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEGLKGPEAANVTGPDGENVRGSRFA 173

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BLAST of Y-box protein vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0305992)

HSP 1 Score: 115.546 bits (288), Expect = 3.975e-29
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 3

Query:  105 ASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            A   K+V+ T++TG VKWFNVK GYGF+ R+D  ED+F+HQSAI ++NP    +SVG+GE ++FD+V G KGNEAANV+   G  V+GS++A
Sbjct:   51 APPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFA 142

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BLAST of Y-box protein vs. Ensembl Fly
Match: yps (gene:FBgn0022959 transcript:FBtr0076027)

HSP 1 Score: 115.546 bits (288), Expect = 4.307e-29
Identity = 51/92 (55.43%), Postives = 70/92 (76.09%), Query Frame = 3

Query:  105 ASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            A   K+V+ T++TG VKWFNVK GYGF+ R+D  ED+F+HQSAI ++NP    +SVG+GE ++FD+V G KGNEAANV+   G  V+GS++A
Sbjct:   51 APPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFA 142

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BLAST of Y-box protein vs. Ensembl Fly
Match: lin-28 (gene:FBgn0035626 transcript:FBtr0077090)

HSP 1 Score: 65.855 bits (159), Expect = 1.834e-12
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 3

Query:  144 GKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEY 377
            GK KWFNV +G+GF+  +D  +++F+HQS I  S      +S+GE EE++F+  + ++G EA  VS+  G   +GS Y
Sbjct:   41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSG----FRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTY 114

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BLAST of Y-box protein vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 108.612 bits (270), Expect = 9.802e-27
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 3

Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            K+V+ T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+   G  V+GS+YA 
Sbjct:   32 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 120

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Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            K+V+ T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+   G  V+GS+YA 
Sbjct:   32 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 120

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BLAST of Y-box protein vs. Ensembl Zebrafish
Match: ybx1 (Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-000629-3])

HSP 1 Score: 108.612 bits (270), Expect = 1.121e-26
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 3

Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            K+V+ T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+   G  V+GS+YA 
Sbjct:   32 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 120

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BLAST of Y-box protein vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066])

HSP 1 Score: 48.521 bits (114), Expect = 2.426e-6
Identity = 29/86 (33.72%), Postives = 45/86 (52.33%), Query Frame = 3

Query:  141 TGKVKWFNVKRGYGF--------VCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSE 374
            +G  KWFNV+ G+GF        +C D    D+F+HQS +         +S+ EGE ++F   + +KG E+  V+   G+   GSE
Sbjct:   35 SGVCKWFNVRMGFGFLSMTHREGICLDSP-VDVFVHQSKLHMEG----FRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVGSE 115

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BLAST of Y-box protein vs. Ensembl Zebrafish
Match: lin28a (lin-28 homolog A (C. elegans) [Source:NCBI gene;Acc:394066])

HSP 1 Score: 48.1358 bits (113), Expect = 2.573e-6
Identity = 29/86 (33.72%), Postives = 45/86 (52.33%), Query Frame = 3

Query:  141 TGKVKWFNVKRGYGF--------VCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSE 374
            +G  KWFNV+ G+GF        +C D    D+F+HQS +         +S+ EGE ++F   + +KG E+  V+   G+   GSE
Sbjct:   29 SGVCKWFNVRMGFGFLSMTHREGICLDSP-VDVFVHQSKLHMEG----FRSLKEGEAVEFTFKRSSKGLESLQVTGPGGAPCVGSE 109

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BLAST of Y-box protein vs. Ensembl Xenopus
Match: ybx3 (Y-box binding protein 3 [Source:NCBI gene;Acc:548572])

HSP 1 Score: 108.612 bits (270), Expect = 4.808e-27
Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 3

Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            ++VL T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V G KG EAANV+   G+ V+GS YA
Sbjct:   29 RKVLATKVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVVAGEKGAEAANVTGPKGAPVQGSRYA 116

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BLAST of Y-box protein vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 108.612 bits (270), Expect = 1.300e-26
Identity = 48/90 (53.33%), Postives = 69/90 (76.67%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            +K+V+ T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+   G  V+GS+YA 
Sbjct:   29 EKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 118

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BLAST of Y-box protein vs. Ensembl Xenopus
Match: hmgcs1 (3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:Xenbase;Acc:XB-GENE-942074])

HSP 1 Score: 101.679 bits (252), Expect = 5.155e-24
Identity = 46/86 (53.49%), Postives = 65/86 (75.58%), Query Frame = 3

Query:  126 LFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            + T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+   G  V+GS+YA 
Sbjct:   41 VTTKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 126

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BLAST of Y-box protein vs. Ensembl Xenopus
Match: usp20 (ubiquitin specific peptidase 20 [Source:Xenbase;Acc:XB-GENE-966528])

HSP 1 Score: 51.6026 bits (122), Expect = 3.212e-7
Identity = 35/115 (30.43%), Postives = 57/115 (49.57%), Query Frame = 3

Query:   60 NNQEKIEGYEENATEAS---KQKQVLFTEITGKVKWFNVKRGYGFVCRD-------DNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSE 374
            +NQE   G  ++  E +   K  + L  + +G  KWFNV+ G+GF+          +   D+F+HQS +         +S+ EGE ++F   K +KG E+  V+   G+   GSE
Sbjct:    5 SNQEITGGLPKSLDETADIHKSDESLIFQGSGVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEG----FRSLKEGESVEFTFKKSSKGLESTRVTGPGGAPCIGSE 115

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BLAST of Y-box protein vs. Ensembl Xenopus
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:100216028])

HSP 1 Score: 50.447 bits (119), Expect = 1.778e-6
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = 3

Query:  141 TGKVKWFNVKRGYGFVCRD-------DNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSE 374
            +G  KWFNV+ G+GF+          +N  D+F+HQS +         +S+ EGE ++F   K +KG E+  V+   G+   G+E
Sbjct:   58 SGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEG----FRSLKEGEPVEFTFKKSSKGFESLRVTGPGGNPCLGNE 138

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BLAST of Y-box protein vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 111.694 bits (278), Expect = 5.962e-28
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K+VL T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+  DG  V+GS YA
Sbjct:   75 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163

[Close]

BLAST of Y-box protein vs. Ensembl Mouse
Match: Ybx3 (Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670])

HSP 1 Score: 112.079 bits (279), Expect = 1.195e-27
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K+VL T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+  DG  V+GS YA
Sbjct:   75 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163

[Close]

BLAST of Y-box protein vs. Ensembl Mouse
Match: Ybx1 (Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146])

HSP 1 Score: 109.768 bits (273), Expect = 5.803e-27
Identity = 50/97 (51.55%), Postives = 71/97 (73.20%), Query Frame = 3

Query:   93 NATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            +A  A   K+V+ T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+   G  V+GS+YA 
Sbjct:   42 SAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 138

[Close]

BLAST of Y-box protein vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 107.457 bits (267), Expect = 6.435e-26
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 3

Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            K VL  ++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI ++NP    +SVG+GE ++FD+V+G KG EAANV+   G  VKGS YA
Sbjct:   88 KPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYA 175

[Close]

BLAST of Y-box protein vs. Ensembl Mouse
Match: Ybx2 (Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372])

HSP 1 Score: 103.99 bits (258), Expect = 3.243e-25
Identity = 46/87 (52.87%), Postives = 64/87 (73.56%), Query Frame = 3

Query:  120 QVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            + L  ++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI ++NP    +SVG+GE ++FD+V+G KG EAANV+   G  VKGS YA
Sbjct:   12 KALAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYA 98

[Close]

BLAST of Y-box protein vs. UniProt/SwissProt
Match: sp|P41824|YBOXH_APLCA (Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.449e-31
Identity = 59/114 (51.75%), Postives = 87/114 (76.32%), Query Frame = 3

Query:   54 MANNQEKIEGYEENA-----TEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            MA+ +++ E  EEN       E  K+K+++ ++++G VKWFNVK GYGF+ RDD  ED+F+HQ+AIVK+NP    +SVG+GE+++FD+V+G KGNEAANV+  +GS V+GS+YA
Sbjct:    1 MADTEKQPE-VEENQPDQEQNEEQKEKKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYA 113

[Close]

BLAST of Y-box protein vs. UniProt/SwissProt
Match: sp|Q9JKB3|YBOX3_MOUSE (Y-box-binding protein 3 OS=Mus musculus OX=10090 GN=Ybx3 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 8.357e-27
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K+VL T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+  DG  V+GS YA
Sbjct:   75 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163

[Close]

BLAST of Y-box protein vs. UniProt/SwissProt
Match: sp|Q62764|YBOX3_RAT (Y-box-binding protein 3 OS=Rattus norvegicus OX=10116 GN=Ybx3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.086e-26
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K+VL T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+  DG  V+GS YA
Sbjct:   75 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163

[Close]

BLAST of Y-box protein vs. UniProt/SwissProt
Match: sp|P21573|YBOX1_XENLA (Y-box-binding protein 1 OS=Xenopus laevis OX=8355 GN=ybx1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.490e-26
Identity = 48/89 (53.93%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            K+V+ T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+  +G  V+GS+YA 
Sbjct:   30 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSKYAA 118

[Close]

BLAST of Y-box protein vs. UniProt/SwissProt
Match: sp|P16989|YBOX3_HUMAN (Y-box-binding protein 3 OS=Homo sapiens OX=9606 GN=YBX3 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 1.744e-26
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K+VL T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+  DG  V+GS YA
Sbjct:   83 EKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 171

[Close]

BLAST of Y-box protein vs. TrEMBL
Match: Q23960 (Y-box protein OS=Dugesia japonica OX=6161 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.593e-72
Identity = 196/268 (73.13%), Postives = 213/268 (79.48%), Query Frame = 3

Query:   54 MANNQEKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQXXXXXXXXXXXXXXXXXXXXXXXDMRSQDXXXXXXXXXXXXXXXPYVVQYRKQNFNYDTHPQYFYEFDXXXXXXXXXXXXXXXXXXXXXXXXEMPVKYEPYENDIYD----XXXXXXXXXXXXXXXXXXXXXLPRENPKANNEEEQNQSDQCQQD 845
            MANNQEK + YE NA ++SKQKQ+L T ITGKVKWFNVKRGYGFVCR+DN EDIFIHQSAIVKSNPDHPRKSVGEGEEI FDIVKGAKGNEAANVSAIDG CVKGSEYALRY RGRGRGRGVFRGRGRSRVVSEEGDM +Q+F RG  R         YVVQYRK N+NYD   QYFYEFDYYRGPPRG    F      G  PRE+P+KYE ++N+++D     R   RGR RGR RGRGRGRG PR+NPKAN  EEQ+QSDQ  QD
Sbjct:    1 MANNQEKTDEYEGNAADSSKQKQLLHTGITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYALRYPRGRGRGRGVFRGRGRSRVVSEEGDMHTQEFARGRGRPFRGGRP--YVVQYRKPNYNYDMPQQYFYEFDYYRGPPRGQGEDFVDEVLGGVSPREVPMKYEQFDNEMFDRRPFGRGRPRGRGRGRSRGRGRGRGSPRDNPKANENEEQHQSDQPLQD 266

[Close]

BLAST of Y-box protein vs. TrEMBL
Match: A0A267GMB9 (CSP domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig026975g2 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.975e-31
Identity = 60/98 (61.22%), Postives = 77/98 (78.57%), Query Frame = 3

Query:   99 TEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQ 392
            TE   +K+V+ T++TG VKWFNVK GYGFV RDD  EDIF+HQSAIVK+NP   ++SVG+GE+++FD+V+G KG EAANV+   G+ VKGSEYA   Q
Sbjct:   12 TETKAEKKVVATKVTGTVKWFNVKNGYGFVNRDDTKEDIFVHQSAIVKNNPRKFQRSVGDGEQVEFDVVQGDKGLEAANVTGPGGTAVKGSEYAADRQ 109

[Close]

BLAST of Y-box protein vs. TrEMBL
Match: A0A267EZK4 (CSP domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig015582g1 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.502e-31
Identity = 60/98 (61.22%), Postives = 77/98 (78.57%), Query Frame = 3

Query:   99 TEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQ 392
            TE   +K+V+ T++TG VKWFNVK GYGFV RDD  EDIF+HQSAIVK+NP   ++SVG+GE+++FD+V+G KG EAANV+   G+ VKGSEYA   Q
Sbjct:   12 TETKAEKKVVATKVTGTVKWFNVKNGYGFVNRDDTKEDIFVHQSAIVKNNPRKFQRSVGDGEQVEFDVVQGDKGLEAANVTGPGGTAVKGSEYAADRQ 109

[Close]

BLAST of Y-box protein vs. TrEMBL
Match: A0A267F5U1 (CSP domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig026975g1 PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.738e-31
Identity = 60/98 (61.22%), Postives = 77/98 (78.57%), Query Frame = 3

Query:   99 TEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQ 392
            TE   +K+V+ T++TG VKWFNVK GYGFV RDD  EDIF+HQSAIVK+NP   ++SVG+GE+++FD+V+G KG EAANV+   G+ VKGSEYA   Q
Sbjct:   12 TETKAEKKVVATKVTGTVKWFNVKNGYGFVNRDDTKEDIFVHQSAIVKNNPRKFQRSVGDGEQVEFDVVQGDKGLEAANVTGPGGTAVKGSEYASDRQ 109

[Close]

BLAST of Y-box protein vs. TrEMBL
Match: A0A1I8J7F2 (CSD_1 domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig030722g1 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.872e-29
Identity = 57/98 (58.16%), Postives = 77/98 (78.57%), Query Frame = 3

Query:   99 TEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQ 392
            T+   +K VL T+++G VKWFNVK GYGF+ R D  EDIF+HQSAI+K+NP   ++SVG+GE ++FD+V+GAKG+EAANV+  DG+ VKGS+YA   Q
Sbjct:   12 TDQDVEKVVLATKVSGTVKWFNVKSGYGFINRADTKEDIFVHQSAIIKNNPKKFQRSVGDGESVEFDVVQGAKGHEAANVTGPDGAAVKGSDYAADRQ 109

[Close]

BLAST of Y-box protein vs. Ensembl Cavefish
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:103040011])

HSP 1 Score: 107.071 bits (266), Expect = 2.875e-26
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 3

Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            K+V+ T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+   G  V+GS+YA 
Sbjct:   33 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAA 121

[Close]

BLAST of Y-box protein vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 104.375 bits (259), Expect = 2.849e-25
Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +++V+ T + G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+  KG+EAANV+   G  VKGS YA
Sbjct:   23 ERKVIATLVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGPGGVPVKGSRYA 111

[Close]

BLAST of Y-box protein vs. Ensembl Cavefish
Match: YBX2 (Y-box-binding protein 2-A-like [Source:NCBI gene;Acc:103036193])

HSP 1 Score: 101.293 bits (251), Expect = 3.730e-24
Identity = 46/86 (53.49%), Postives = 64/86 (74.42%), Query Frame = 3

Query:  123 VLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            ++ T + G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+  KG+EAANV+   G  VKGS YA
Sbjct:   19 IVATLVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEIVEFDVVEATKGSEAANVTGPGGVPVKGSRYA 104

[Close]

BLAST of Y-box protein vs. Ensembl Cavefish
Match: lin28a (protein lin-28 homolog A-like [Source:NCBI gene;Acc:103022728])

HSP 1 Score: 48.1358 bits (113), Expect = 2.585e-6
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 3

Query:  141 TGKVKWFNVKRGYGFVC---RD----DNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSE 374
            +G  KWFNV+ G+GF+    RD    +   D+F+HQS +         +S+ EGE ++F   K +KG E+  V+   G+   GSE
Sbjct:   38 SGVCKWFNVRMGFGFLSMTSRDGAALETPVDVFVHQSKLHMDG----FRSLKEGEPVEFSFKKSSKGLESLRVTGPGGAPCSGSE 118

[Close]

BLAST of Y-box protein vs. Ensembl Cavefish
Match: lin28a (protein lin-28 homolog A-like [Source:NCBI gene;Acc:103022728])

HSP 1 Score: 48.1358 bits (113), Expect = 2.775e-6
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 3

Query:  141 TGKVKWFNVKRGYGFVC---RD----DNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSE 374
            +G  KWFNV+ G+GF+    RD    +   D+F+HQS +         +S+ EGE ++F   K +KG E+  V+   G+   GSE
Sbjct:   28 SGVCKWFNVRMGFGFLSMTSRDGAALETPVDVFVHQSKLHMDG----FRSLKEGEPVEFSFKKSSKGLESLRVTGPGGAPCSGSE 108

[Close]

BLAST of Y-box protein vs. Ensembl Nematostella
Match: EDO41469 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S475])

HSP 1 Score: 110.153 bits (274), Expect = 4.593e-30
Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = 3

Query:  123 VLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +  T++TG VKWFNVK GYGF+ RDDN EDIF+HQ+AI K+NP    +SVG+GE ++F++V G KG EA+NV+  DG  V+GS+YA
Sbjct:    3 IAATKVTGTVKWFNVKNGYGFINRDDNKEDIFVHQTAIAKNNPKKYLRSVGDGEVVEFNVVSGTKGLEASNVTGPDGEPVQGSKYA 88

[Close]

BLAST of Y-box protein vs. Ensembl Nematostella
Match: EDO44703 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV03])

HSP 1 Score: 69.3218 bits (168), Expect = 6.606e-13
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 3

Query:   96 ATEASKQKQVLFTEI--------TGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQ 392
            A E S++ + + TE+        TG VKWFN+ +G+GF+ RDD  ED+F+HQSAI  S      +S+ EGE ++  I    KG  A  V++  G  VKG+    R +
Sbjct:  461 ACEYSEEAREVTTEVGGKDTITCTGSVKWFNLIKGFGFITRDDGGEDVFVHQSAIKASG----YRSLEEGEHVQLTISNSDKGKVAICVTSPGGGNVKGASRKNRVK 563

[Close]

BLAST of Y-box protein vs. Ensembl Medaka
Match: ybx1 (Y-box binding protein 1 [Source:NCBI gene;Acc:100049221])

HSP 1 Score: 107.842 bits (268), Expect = 1.427e-26
Identity = 48/89 (53.93%), Postives = 68/89 (76.40%), Query Frame = 3

Query:  117 KQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            K+V+ T++ G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+V+G KG EAANV+   G  V+GS+YA 
Sbjct:   34 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVAVQGSKYAA 122

[Close]

BLAST of Y-box protein vs. Ensembl Medaka
Match: ENSORLT00000007875.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 108.997 bits (271), Expect = 2.895e-26
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 3

Query:   96 ATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            A E   +++V+ T + G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+++ AKG+EAANV+   G  VKGS YA
Sbjct:   98 AEEKQSERKVIATAVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYA 192

[Close]

BLAST of Y-box protein vs. Ensembl Medaka
Match: ENSORLT00000007880.2 (Y-box binding protein 2 [Source:NCBI gene;Acc:100049372])

HSP 1 Score: 108.997 bits (271), Expect = 3.005e-26
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 3

Query:   96 ATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            A E   +++V+ T + G VKWFNV+ GYGF+ R+D  ED+F+HQ+AI K+NP    +SVG+GE ++FD+++ AKG+EAANV+   G  VKGS YA
Sbjct:   98 AEEKQSERKVIATAVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAKGSEAANVTGPGGIPVKGSRYA 192

[Close]

BLAST of Y-box protein vs. Ensembl Medaka
Match: ENSORLT00000029434.1 (pep primary_assembly:ASM223467v1:3:36782961:36787024:1 gene:ENSORLG00000026367.1 transcript:ENSORLT00000029434.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 52.7582 bits (125), Expect = 2.045e-8
Identity = 22/57 (38.60%), Postives = 40/57 (70.18%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGE 284
            +++V+ T +   VKWF+V  GYG + R++  ED+F+ Q+AI  +NP +  +S+G+G+
Sbjct:   29 KRKVITTGVQDTVKWFHVCNGYGLINRNNTKEDVFVPQTAIKNNNPRNFLRSIGDGK 85

[Close]

BLAST of Y-box protein vs. Ensembl Medaka
Match: lin28b (lin-28 homolog B [Source:NCBI gene;Acc:101160951])

HSP 1 Score: 51.9878 bits (123), Expect = 2.121e-7
Identity = 33/108 (30.56%), Postives = 56/108 (51.85%), Query Frame = 3

Query:   81 GYEENATEASKQKQVLFTEI---TGKVKWFNVKRGYGFVCRDDN-------CEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSE 374
            G  E   +A++Q+     ++   +G  KWFNV+ G+GF+   ++         D+F+HQS +V        +S+ EGE+++F   K +KG E+  V+   G    GSE
Sbjct:   18 GVREEPAKAAEQEDRTRPQVLSGSGFCKWFNVRMGFGFISMTNSEGSPVEPPLDVFVHQSKLVMEG----FRSLKEGEQVEFTYKKSSKGLESLRVTGPGGGPCVGSE 121

[Close]

BLAST of Y-box protein vs. Planmine SMEST
Match: SMESG000032180.1 (SMESG000032180.1)

HSP 1 Score: 275.789 bits (704), Expect = 1.019e-92
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 3

Query:   54 MANNQEKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQXXXXXXXXXXXXXXXXXXXXXXXDMRSQDXXXXXXXXXXXXXXXPYVVQYRKQNFNYDTHPQYFYEFD 596
            MANNQEKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQRGRGRGRGVFRGRGRSRVVSEEGDMRSQDFLRGGLRGRNFRGGRPYVVQYRKQNFNYDTHPQYFYEFD
Sbjct:    1 MANNQEKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRYQRGRGRGRGVFRGRGRSRVVSEEGDMRSQDFLRGGLRGRNFRGGRPYVVQYRKQNFNYDTHPQYFYEFD 181

[Close]

BLAST of Y-box protein vs. Planmine SMEST
Match: SMESG000032189.1 (SMESG000032189.1)

HSP 1 Score: 146.747 bits (369), Expect = 4.891e-40
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 3

Query:   87 EENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYAL 383
            +EN    S QK+V+ + + GKVKWFNVKRGYGFVCR DN EDIFIH SAIVKSNP+HPRKSV +GEEI FDIV+G  G EAANVSA DG+ VKGSEYAL
Sbjct:  168 KENRESESIQKEVIISTVLGKVKWFNVKRGYGFVCRHDNQEDIFIHHSAIVKSNPEHPRKSVEDGEEILFDIVQGKHGQEAANVSAPDGNFVKGSEYAL 266

HSP 2 Score: 145.591 bits (366), Expect = 1.223e-39
Identity = 75/112 (66.96%), Postives = 86/112 (76.79%), Query Frame = 3

Query:   54 MANNQEKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYALRY 389
            MA++Q      + N TE+S +K VL   I GKVKWFNVK  YGFV R DN EDIFIHQSAIVKSNP+HPRKSV +GEEI FD+V+G KG E ANV  IDG+CVKGSEYALR+
Sbjct:    1 MADHQNGQNENDANKTESSNEKPVLCEGIQGKVKWFNVKLRYGFVNRYDNNEDIFIHQSAIVKSNPNHPRKSVEDGEEILFDVVQGIKGLEVANVCGIDGNCVKGSEYALRF 112

[Close]

BLAST of Y-box protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 122.094 bits (305), Expect = 2.099e-31
Identity = 55/89 (61.80%), Postives = 75/89 (84.27%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K++L T+I GKVKWFNVK GYGF+ R+DN EDIF+HQ+AI+K+NP   ++SVG+GEE++FD+V+G KG EAANV+  DG  V+GS+YA
Sbjct:   17 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYA 105

[Close]

BLAST of Y-box protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 121.709 bits (304), Expect = 3.138e-31
Identity = 55/89 (61.80%), Postives = 75/89 (84.27%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K++L T+I GKVKWFNVK GYGF+ R+DN EDIF+HQ+AI+K+NP   ++SVG+GEE++FD+V+G KG EAANV+  DG  V+GS+YA
Sbjct:   17 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYA 105

[Close]

BLAST of Y-box protein vs. Planmine SMEST
Match: SMESG000076962.1 (SMESG000076962.1)

HSP 1 Score: 121.709 bits (304), Expect = 3.255e-31
Identity = 55/89 (61.80%), Postives = 75/89 (84.27%), Query Frame = 3

Query:  114 QKQVLFTEITGKVKWFNVKRGYGFVCRDDNCEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDGSCVKGSEYA 380
            +K++L T+I GKVKWFNVK GYGF+ R+DN EDIF+HQ+AI+K+NP   ++SVG+GEE++FD+V+G KG EAANV+  DG  V+GS+YA
Sbjct:   17 EKKILATKINGKVKWFNVKSGYGFINRNDNQEDIFVHQTAILKNNPRKWQRSVGDGEEVEFDVVEGEKGLEAANVTGPDGIPVQGSKYA 105

The following BLAST results are available for this feature:

BLAST of Y-box protein vs. Ensembl Human
BLAST of Y-box protein vs. Ensembl Celegans
BLAST of Y-box protein vs. Ensembl Fly
BLAST of Y-box protein vs. Ensembl Zebrafish
BLAST of Y-box protein vs. Ensembl Xenopus
BLAST of Y-box protein vs. Ensembl Mouse
BLAST of Y-box protein vs. UniProt/SwissProt
BLAST of Y-box protein vs. TrEMBL
BLAST of Y-box protein vs. Ensembl Cavefish
BLAST of Y-box protein vs. Ensembl Sea Lamprey
BLAST of Y-box protein vs. Ensembl Yeast
BLAST of Y-box protein vs. Ensembl Nematostella
BLAST of Y-box protein vs. Ensembl Medaka
BLAST of Y-box protein vs. Planmine SMEST

BLAST of Y-box protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
YBX3	2.690e-27	56.18	Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG...	[more]
YBX3	3.631e-27	56.18	Y-box binding protein 3 [Source:HGNC Symbol;Acc:HG...	[more]
YBX1	9.296e-27	51.55	Y-box binding protein 1 [Source:HGNC Symbol;Acc:HG...	[more]
YBX2	9.858e-26	45.37	Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG...	[more]
YBX2	9.858e-26	45.37	Y-box binding protein 2 [Source:HGNC Symbol;Acc:HG...	[more]

BLAST of Y-box protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
cey-1	5.105e-27	55.68	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:O62...	[more]
cey-2	7.543e-19	44.23	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91...	[more]
cey-3	2.816e-17	43.12	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91...	[more]
cey-3	2.816e-17	43.12	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:P91...	[more]
cey-4	3.833e-17	47.83	C. Elegans Y-box [Source:UniProtKB/TrEMBL;Acc:G5E...	[more]

BLAST of Y-box protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3


Match Name	E-value	Identity	Description
yps	3.975e-29	55.43	gene:FBgn0022959 transcript:FBtr0305992	[more]
yps	4.307e-29	55.43	gene:FBgn0022959 transcript:FBtr0076027	[more]
lin-28	1.834e-12	41.03	gene:FBgn0035626 transcript:FBtr0077090	[more]

BLAST of Y-box protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ybx1	9.802e-27	53.93	Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
ybx1	9.802e-27	53.93	Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
ybx1	1.121e-26	53.93	Y box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-...	[more]
lin28a	2.426e-6	33.72	lin-28 homolog A (C. elegans) [Source:NCBI gene;Ac...	[more]
lin28a	2.573e-6	33.72	lin-28 homolog A (C. elegans) [Source:NCBI gene;Ac...	[more]

BLAST of Y-box protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ybx3	4.808e-27	54.55	Y-box binding protein 3 [Source:NCBI gene;Acc:5485...	[more]
hmgcs1	1.300e-26	53.33	3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:...	[more]
hmgcs1	5.155e-24	53.49	3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:...	[more]
usp20	3.212e-7	30.43	ubiquitin specific peptidase 20 [Source:Xenbase;Ac...	[more]
lin28b	1.778e-6	32.94	lin-28 homolog B [Source:NCBI gene;Acc:100216028]	[more]

BLAST of Y-box protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Ybx3	5.962e-28	56.18	Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670...	[more]
Ybx3	1.195e-27	56.18	Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670...	[more]
Ybx1	5.803e-27	51.55	Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]	[more]
Ybx2	6.435e-26	54.55	Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372...	[more]
Ybx2	3.243e-25	52.87	Y box protein 2 [Source:MGI Symbol;Acc:MGI:1096372...	[more]

BLAST of Y-box protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P41824\|YBOXH_APLCA	1.449e-31	51.75	Y-box factor homolog OS=Aplysia californica OX=650...	[more]
sp\|Q9JKB3\|YBOX3_MOUSE	8.357e-27	56.18	Y-box-binding protein 3 OS=Mus musculus OX=10090 G...	[more]
sp\|Q62764\|YBOX3_RAT	1.086e-26	56.18	Y-box-binding protein 3 OS=Rattus norvegicus OX=10...	[more]
sp\|P21573\|YBOX1_XENLA	1.490e-26	53.93	Y-box-binding protein 1 OS=Xenopus laevis OX=8355 ...	[more]
sp\|P16989\|YBOX3_HUMAN	1.744e-26	56.18	Y-box-binding protein 3 OS=Homo sapiens OX=9606 GN...	[more]

BLAST of Y-box protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
Q23960	1.593e-72	73.13	Y-box protein OS=Dugesia japonica OX=6161 PE=2 SV=...	[more]
A0A267GMB9	2.975e-31	61.22	CSP domain-containing protein OS=Macrostomum ligna...	[more]
A0A267EZK4	3.502e-31	61.22	CSP domain-containing protein OS=Macrostomum ligna...	[more]
A0A267F5U1	5.738e-31	61.22	CSP domain-containing protein OS=Macrostomum ligna...	[more]
A0A1I8J7F2	1.872e-29	58.16	CSD_1 domain-containing protein OS=Macrostomum lig...	[more]

BLAST of Y-box protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ybx1	2.875e-26	53.93	Y-box binding protein 1 [Source:NCBI gene;Acc:1030...	[more]
YBX2	2.849e-25	52.81	Y-box-binding protein 2-A-like [Source:NCBI gene;A...	[more]
YBX2	3.730e-24	53.49	Y-box-binding protein 2-A-like [Source:NCBI gene;A...	[more]
lin28a	2.585e-6	35.29	protein lin-28 homolog A-like [Source:NCBI gene;Ac...	[more]
lin28a	2.775e-6	35.29	protein lin-28 homolog A-like [Source:NCBI gene;Ac...	[more]

BLAST of Y-box protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Y-box protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Y-box protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2


Match Name	E-value	Identity	Description
EDO41469	4.593e-30	58.14	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44703	6.606e-13	38.32	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of Y-box protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ybx1	1.427e-26	53.93	Y-box binding protein 1 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000007875.2	2.895e-26	51.58	Y-box binding protein 2 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000007880.2	3.005e-26	51.58	Y-box binding protein 2 [Source:NCBI gene;Acc:1000...	[more]
ENSORLT00000029434.1	2.045e-8	38.60	pep primary_assembly:ASM223467v1:3:36782961:367870...	[more]
lin28b	2.121e-7	30.56	lin-28 homolog B [Source:NCBI gene;Acc:101160951]	[more]

BLAST of Y-box protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000032180.1	1.019e-92	100.00	SMESG000032180.1	[more]
SMESG000032189.1	4.891e-40	72.73	SMESG000032189.1	[more]
SMESG000076962.1	2.099e-31	61.80	SMESG000076962.1	[more]
SMESG000076962.1	3.138e-31	61.80	SMESG000076962.1	[more]
SMESG000076962.1	3.255e-31	61.80	SMESG000076962.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30030829 ID=SMED30030829|Name=Y-box protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1052bp
CGACAGTCAAGCTTTGGAAATTAACATCCTACTAAGATCGAAAAGCCGCC
GAGATGGCCAACAATCAAGAAAAAATTGAAGGATACGAGGAAAATGCAAC
TGAAGCCTCGAAACAAAAACAAGTTTTATTTACAGAAATTACTGGAAAGG
TTAAATGGTTCAACGTGAAACGAGGATATGGATTTGTATGTCGAGATGAT
AATTGTGAAGACATATTTATTCATCAATCTGCTATAGTTAAAAGCAATCC
TGATCATCCAAGAAAATCCGTTGGGGAAGGAGAGGAAATAAAATTCGATA
TTGTAAAAGGAGCTAAAGGAAATGAAGCGGCAAATGTATCTGCTATAGAT
GGCAGTTGTGTAAAAGGAAGTGAATATGCTTTAAGGTATCAACGGGGTCG
AGGACGAGGACGTGGTGTATTTAGAGGTAGAGGCAGATCACGTGTGGTGT
CTGAAGAAGGAGACATGCGTTCTCAAGATTTTTTAAGAGGTGGTTTACGA
GGTAGAAATTTTAGAGGAGGTAGACCTTATGTTGTCCAGTATCGTAAACA
AAATTTTAATTATGACACGCATCCTCAGTACTTTTATGAATTTGATTATT
ACCGAGGTCCACCTCGAGGTCCGAGAGGAGGTTTCAGAGGGCGTAGCTTT
AGAGGTTATCCACCAAGAGAAATGCCTGTGAAATATGAACCATATGAAAA
TGACATTTATGATAGACGACCACCAAGCAGAGGTAGATCAAGAGGTCGTG
GGCGAGGAAGAGGCCGTGGTCGTGGTTTACCGCGAGAGAATCCTAAAGCC
AACAATGAAGAAGAGCAGAATCAATCTGATCAATGTCAGCAAGATTAGAT
TGTAGTTTGCGATTAGTTATTAAATTTGGTTTGGTGCTTGTTCTGATAGT
GTTAATGAAAGTTACGGAATTTTCTAATTTATTCATGTCGATAGAGTATA
TCTAATAGAATATGTAGTTTTTATTGGCTTGTTTAATAATCGCGGTTATA
ATTGTCAACAGAATTTTAATGTACAACCTTGCAAAATACAACACTTTTGC
TG

protein sequence of SMED30030829-orf-1

>SMED30030829-orf-1 ID=SMED30030829-orf-1|Name=SMED30030829-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=265bp
MANNQEKIEGYEENATEASKQKQVLFTEITGKVKWFNVKRGYGFVCRDDN
CEDIFIHQSAIVKSNPDHPRKSVGEGEEIKFDIVKGAKGNEAANVSAIDG
SCVKGSEYALRYQRGRGRGRGVFRGRGRSRVVSEEGDMRSQDFLRGGLRG
RNFRGGRPYVVQYRKQNFNYDTHPQYFYEFDYYRGPPRGPRGGFRGRSFR
GYPPREMPVKYEPYENDIYDRRPPSRGRSRGRGRGRGRGRGLPRENPKAN
NEEEQNQSDQCQQD*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000034	epidermis
PLANA:0000070	intestinal phagocyte
PLANA:0000429	neoblast
PLANA:0003117	parapharyngeal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR002059	CSP_DNA-bd
IPR011129	CSD
IPR012340	NA-bd_OB-fold

Vocabulary: **molecular function**
Term	Definition
GO:0003677	DNA binding
GO:0003676	nucleic acid binding

Vocabulary: **biological process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Main menu

Y-box protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 15

Owlery

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