SMED30030820
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30030820 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 3
Homology
BLAST of SMED30030820 vs. Ensembl Zebrafish
Match: CR762475.1 (pep chromosome:GRCz11:4:55494751:55498830:1 gene:ENSDARG00000098243.2 transcript:ENSDART00000172605.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CR762475.1) HSP 1 Score: 52.7582 bits (125), Expect = 2.135e-6 Identity = 28/72 (38.89%), Postives = 45/72 (62.50%), Query Frame = -2 Query: 1981 KTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SINRDNRVLFEEFID 2196 +T Q +FP + ++LK+Y + V+TA V SFS+M+ +K + R+ EERLS L+ +I +D V E I+ Sbjct: 820 ETSGQHVFPALVEMLKVYATLPVSTATVERSFSKMRLIKNQLRSLCSEERLSDLLLIAIEKDIPVDHSEVIN 891
BLAST of SMED30030820 vs. TrEMBL
Match: A0A4Y2TN79 (Dimer_Tnp_hAT domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_210133_1 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.427e-12 Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = -2 Query: 1969 QTAMDHIKTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SINRDNRVLFEEFIDKGKR 2217 +TA+ ++ C + FPN++ LLK+ ++ V+ A V SFS +++LKT RNTT E RL+GL+ SI+RD ++ EEF+DK R Sbjct: 20 KTAISSLEKCDKTSFPNIYTLLKLLAVLPVSVATVERSFSSLRRLKTYLRNTTSESRLNGLILLSIHRDLKISDEEFLDKFAR 102
BLAST of SMED30030820 vs. TrEMBL
Match: A0A4Y2BX22 (Dimer_Tnp_hAT domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_238683_1 PE=4 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.789e-12 Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = -2 Query: 1978 QTAMDHIKTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SINRDNRVLFEEFIDK 2217 +TA+ ++ C + FPN++ LLK+ ++SV+ A+V SFS +++LKT RNTT E RL+GL SI RD ++ EE +DK Sbjct: 17 KTAISSLEKCDKTFFPNIYILLKLLAVLSVSVANVERSFSSLRRLKTYLRNTTSESRLNGLALLSIYRDIKIRDEELLDK 96
BLAST of SMED30030820 vs. TrEMBL
Match: X1WTS2 (Dimer_Tnp_hAT domain-containing protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 4.280e-12 Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = -2 Query: 1966 EIW*KRLRN--STGKSQTAMDHIKTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SINRD----NRVLFEEFIDKGKRR 2259 EIW + +N K TA++ + C + M+PN++KLLKI +I V+TA SF+ +++LKT RNTT E RL GL +I+RD + +L ++F + GK R Sbjct: 97 EIWQAKWKNIEDNLKPTTAIEALSVCDRLMYPNMYKLLKILAIIPVSTATAERSFTMLRRLKTYLRNTTSESRLVGLALLAIHRDIDIPDDILLDKFANSGKER 200
BLAST of SMED30030820 vs. TrEMBL
Match: A0A4Y1ZUW7 (Dimer_Tnp_hAT domain-containing protein OS=Araneus ventricosus OX=182803 GN=AVEN_157365_1 PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.926e-12 Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = -2 Query: 1978 QTAMDHIKTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SINRDNRVLFEEFIDK 2217 +TA+ ++ C + FPN++ LLK+ ++ V+ A V SFS +++LKT RNTT E RL+GL SINRD ++ EE +DK Sbjct: 17 KTAISSLEKCDKNFFPNIYILLKLLAVLPVSVATVERSFSSLRRLKTYLRNTTSESRLNGLALLSINRDIKIRDEEVLDK 96
BLAST of SMED30030820 vs. TrEMBL
Match: X1X8F3 (Dimer_Tnp_hAT domain-containing protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.234e-12 Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = -2 Query: 1960 EIW*KRLRNSTGK-SQTAMDHIKTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SINRDNRV----LFEEFIDKGKRRLD 2259 E W ++ N + A+D + CP+++FP++ LLK+ ++ V+TA V SFS +K++KT RN+TGE RL+GL +I+RD ++ + F K +RRLD Sbjct: 33 EFWKQKWSNEENDLPKNALDTLSKCPEDLFPHINILLKLLAILPVSTASVERSFSSLKRIKTYLRNSTGEARLNGLALMNIHRDIQIDTDAILNMFASKKERRLD 137
BLAST of SMED30030820 vs. Ensembl Cavefish
Match: ENSAMXT00000036272.1 (pep primary_assembly:Astyanax_mexicanus-2.0:20:11935414:11938921:1 gene:ENSAMXG00000041670.1 transcript:ENSAMXT00000036272.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 52.373 bits (124), Expect = 2.643e-6 Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = -2 Query: 2017 QEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SIN 2184 QE++PN++ L+I + VT A SFS++K +KT R+T G+ERLSGL SIN Sbjct: 740 QEVYPNLWIALRIALTLPVTVASAERSFSKLKLIKTYLRSTMGQERLSGLAVISIN 795
BLAST of SMED30030820 vs. Ensembl Nematostella
Match: EDO40596 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6Q7]) HSP 1 Score: 59.3066 bits (142), Expect = 2.945e-10 Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = -2 Query: 1963 QTAMDHIKTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SI--NR--DNRVLFEEFIDKGKRRL 2217 ++A++ +K C E +PNV LL+I +SVT+A+ SFS MK+LKT RNT ER S L S+ NR D + + F + RRL Sbjct: 64 RSAVNALKNCDAEFYPNVHVLLRILCTLSVTSAESERSFSTMKRLKTYLRNTMSTERESSLALISVHYNRSLDVDAIIDTFATRHPRRL 152
BLAST of SMED30030820 vs. Ensembl Nematostella
Match: EDO40662 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S6J7]) HSP 1 Score: 57.7658 bits (138), Expect = 2.166e-8 Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = -2 Query: 1963 QTAMDHIKTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SI--NR--DNRVLFEEFIDKGKRRL 2217 ++A+D +K C E +PNV LL+I + VT+A+ SFS MK+LKT RNT ER L S+ NR D + + F + RRL Sbjct: 215 RSAVDALKNCDAEFYPNVHVLLRILCTLPVTSAESERSFSTMKRLKTYLRNTMSTEREPSLALISVHYNRSLDVDAIIDTFATRHPRRL 303
BLAST of SMED30030820 vs. Planmine SMEST
Match: SMESG000040959.1 (SMESG000040959.1) HSP 1 Score: 934.48 bits (2414), Expect = 0.000e+0 Identity = 482/489 (98.57%), Postives = 485/489 (99.18%), Query Frame = 3 Query: 42 MFNKTVLEKLGFIITFSALAFAFLVSYGKVAIILGKSATYKDVSTPLXXXXXXXXXXXXXXXXXSKYFIRRHKNAKPFGETQAENPIIIYFICLPMTVSIIICMVITLFKDTYKPNSTRDEIFFDTMAILYFGSLLLILIQLNGFYDFGENWEITFSNIFAVTSAIFSQIYFLSLFSSQQQAYFFTREVNNSDIKQECQNVSKTEIRIIFCALWTEVEKYVSKFHLVLGSICMLLLVKAFNKLYKNLQRYKKEDIFVLPNMEEKLSRFGKTMIFICGSVNFSYCMALGFESNKTFRYITSIAEIFVYFMMIYFSINQLGIIIKWPYRSDVENRDMFNEIMIWAGFLGQTMQLTAVINYYDSSYKSLIILRNLIQFVQTSVQTIFESILIEKSQPSKNILFSTITFLLVLAILNFQFGIINIWLFGQMLKDLNDKSLNDPKFQYYFMIILVFRVGTIFTIMQKFHSSFLLFRLNFIVYKTKKNGYNEIEG 1508 MFNKTVLEKLGFIITFSALAFAFLVSYGKVAIILG SATYKDVSTPLNVIGGVLNIVFIVLIVISKYFIRRHKNAKPFGETQAENPIIIYFICLPMTVSIIICM+ITLFKDTYKPNSTRDEIFFDTMAILYFGSLLLILIQLNGFYDFGENWEITFSNIFAVTSAIFSQIYFLSLFSSQQQAYFFTREVNNSDIKQECQNVSKTEIRIIFCALWTEVEKYVSKFHLVLGSICMLLLVKAFNKLYKNLQRYKKEDIFVLPNMEEKLSRFGKTMIFICGSVNFSYCMALGFESNKTFRYITSIAEIFVYFMMIYFSINQLGIIIKWPYRSDVENRDMFNEIMIWAGFLGQTMQLTA+INYYDSS+KSL ILRNLIQFVQTSVQTIFESILIEKSQPSKNILFSTIT L VLAILNFQFGIINIWLFGQMLKDLNDKSLNDPKFQYYFMIILVFRVGTIFTIMQKFHSSFLLFRLNFIVYKTKKNGYNEIEG Sbjct: 1 MFNKTVLEKLGFIITFSALAFAFLVSYGKVAIILGNSATYKDVSTPLNVIGGVLNIVFIVLIVISKYFIRRHKNAKPFGETQAENPIIIYFICLPMTVSIIICMIITLFKDTYKPNSTRDEIFFDTMAILYFGSLLLILIQLNGFYDFGENWEITFSNIFAVTSAIFSQIYFLSLFSSQQQAYFFTREVNNSDIKQECQNVSKTEIRIIFCALWTEVEKYVSKFHLVLGSICMLLLVKAFNKLYKNLQRYKKEDIFVLPNMEEKLSRFGKTMIFICGSVNFSYCMALGFESNKTFRYITSIAEIFVYFMMIYFSINQLGIIIKWPYRSDVENRDMFNEIMIWAGFLGQTMQLTALINYYDSSHKSLTILRNLIQFVQTSVQTIFESILIEKSQPSKNILFSTITSLSVLAILNFQFGIINIWLFGQMLKDLNDKSLNDPKFQYYFMIILVFRVGTIFTIMQKFHSSFLLFRLNFIVYKTKKNGYNEIEG 489
BLAST of SMED30030820 vs. Planmine SMEST
Match: SMESG000064134.1 (SMESG000064134.1) HSP 1 Score: 139.043 bits (349), Expect = 1.892e-38 Identity = 71/103 (68.93%), Postives = 82/103 (79.61%), Query Frame = -2 Query: 1957 IW*KRLRNSTGKSQTAMDHIKTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SINRDNRVLFEEFID---KGKRRLDV 2256 +W KRLRNST K QTAM+H KTC Q MF NV LLKIYN+I + TADV S++Q KQLKT+DRNT GEE+L+GLM SINRD +VLFEEFID KGKRR+DV Sbjct: 1 MWQKRLRNSTKKQQTAMNHFKTCLQGMFLNVLTLLKIYNVIPIITADVKRSYTQNKQLKTDDRNTAGEEKLNGLMVLSINRDIKVLFEEFIDEFRKGKRRIDV 103
BLAST of SMED30030820 vs. Planmine SMEST
Match: SMESG000051898.1 (SMESG000051898.1) HSP 1 Score: 103.605 bits (257), Expect = 1.008e-22 Identity = 126/493 (25.56%), Postives = 234/493 (47.46%), Query Frame = 3 Query: 45 FNKTVLEKLGFIITFSALAFAFLVSYGKVAIILGKSATYKDVSTPLXXXXXXXXXXXXXXXXXSKYFIRRHKNAKPFGETQAENPIIIYFICLPMTVSIIICMVITLFKDTYKPNSTRDEI-FFDTMAILYFGSLLLILIQLNGFYDFGENWEITFSNIFAVTSAIFSQIYFLSLFSSQQQAYFFTREVNNSDIKQEC-QNVSKTEIRIIFCALWTEVEKYVSKFHLVLGSICMLLLVKAFNKLYKNLQRYKKED-IFVLPNMEEKLSRFGK-------------TMIFICGSVNFSYCMALGFESNKTFRYITSIAEIFVYFMMIYFSINQLGIIIKWPYRSDVENRDMFNEIMIWAGFLGQTMQLTAVINYY--------DSSYKSLIILRNLIQFVQTSVQTIFESILIEK---SQPSKNILFSTITF-LLVLAILNFQFGIINIWLFGQMLKDLNDKSLN-DPKFQYYFMIILVFRVGTIFTIMQKFHS 1436 F K + EKL +T + L++YG + L ++ + V PL + G V N++ + LI+ + Y HK F + EN I+Y+ C+P T+ +I ++ITL K Y I F +++YF +++ + + N +DFGE+W + F N+ + S ++ + +S +Q +F +N S I Q C N+ R + LW V ++ K ++ G + + K+ + Y LQ YK + L + +E ++R + T++F G + + +A+ S + +I E+F Y MI +I + +I + + +FNE++IW G GQ + AVI Y ++ Y + I+++ ++Q + VQ++FE+IL+EK ++ KN FST+ F +A+ NF +++F ++ + L + + + L F G IF+++Q+ H Sbjct: 7 FEKVLFEKLSISLTVITFSIGLLITYGWNTLTLASNSFLEFVWAPLYICGSVFNLLVVFLILFALY--MNHKYRNLFNKCPMENQDILYYFCIPATIFVISTLIITLVKSLYIAECNGKMIVLFIFTSVIYFVVIVVFIAETNSVFDFGESWALNFVNMMVSLIIVSSLVFNIVFNTSLEQMDYFAAVINKSLINQSCIDNLPFIAQRTYY--LWVSVRIFLYKSIVLFGLFSTVFIFKSLYRNYLYLQFYKYDGKTNDLKSNDEDVNRNSQKNNLKKLYLKIFSTLLF--GILFLAINIAVYIRSKEYLEHILIGMEMFSYISMIGLTIFMMKNLIFTDF--SISRIYVFNEVIIWLGLCGQLVHCFAVIAAYIYLMYNEVNAIYIA-ILIKYVLQILSNIVQSVFEAILVEKLWNNKIGKN--FSTMAFGAFYIAVNNF------VYIFTDLILVYKEFLLPFEGSVKLKLFVCLFFNFGNIFSVLQRIHG 482
BLAST of SMED30030820 vs. Planmine SMEST
Match: SMESG000040960.1 (SMESG000040960.1) HSP 1 Score: 72.7886 bits (177), Expect = 5.733e-13 Identity = 126/504 (25.00%), Postives = 219/504 (43.45%), Query Frame = 3 Query: 51 KTVLEKLGFIITFSALAFAFLVSYGKVAIILGKSATY--KDVSTPLXXXXXXXXXXXXXXXXXSKYFIRR---HKNAKPFGETQAENPIIIYFICLPMTVSIIICMVITLFKDTYKPNSTR-DEIFFDTMAILYFGSLLLILIQLNGFYDFGENWEITFSNIFAVTSAIFSQIYFLSLFSSQQQAYFFTREVNNSDIKQEC----QNVSKTEIRIIFCALWTEVEKYVSKFHLVLGSICMLLLVKAFNKLYKNLQRYKKEDIFV----LPNMEEKLSRFGKTMIFICGSVNFSYCMALGFESNKTFRY---------ITSIAEIFVYFMMIYFSINQLGIIIKWPYRSDVENRDMFNEIMIWAGFLGQ-----TMQLTAVINYYDSSYKSL---IILRNLIQFVQTSVQTIFESILIEKSQPSKNILFST--ITFLLVLAILNFQFGIINIWLFGQMLKDLNDK---SLNDP-KFQYYFMIILVFRVGTIFTIMQKFHSSFLLF 1451 KT+LEKL F+I FL+S+G V I LG Y K +S + + + ++ S + H N F + + N I++ C P+ II ++I+ D Y + F + +Y+ ++++ L + + D GE W I FSN+ A+ I SQI+++ + S +Q +N +D C +SKT + L ++ + L+ G++C LL+ F Y +L +K E + ++ +S F S+ + +GF S K F Y ++ I EI + +++ S+ WP S FN ++W G +GQ TM + + I++ + + L ++ L + +Q SVQ I ES+L+E ++ + ++ I L L I N I+NI +ND L DP F+ +F+ F + +F ++Q+ H FLLF Sbjct: 13 KTILEKLIFLIGL------FLISFGSVTI-LGLIHQYFVKILSISYYWNSMIFSGSVMNIVSASIIILNEYLNHLNRNHFYKLRVLNSEILHTFCFPLVSFIIGSLLISTINDIYLIRCIGYGRMIFASTNSIYYITVMIFLAKYHFVCDDGEEWIINFSNMSAIFIIIISQIFYILVSISVEQITLIVPILNITDFDTSCIQHLNTISKTIDNLTGRLLMPMMKAW-----LIFGTLCCTLLIMPFLHHYSSLNNHKIEQSIIKNSSFKGVKHDISNF---------SLIVTLAFGIGFLSCKFFFYYYHTYWTMILSVILEINISIILLICSLYATSEAATWPVCS--VKLFQFNNAIVWIGLIGQFVFSVTMIMNS-ISHLSTEFSILGLCVLFEYLSKMIQISVQFILESLLLETQWENRKLEKNSKLINAFLFLMINNLCLTILNI-------ARINDNILPPLKDPISFKIFFIFTTNFSM--VFCVLQRLH-GFLLF 482
BLAST of SMED30030820 vs. Planmine SMEST
Match: SMESG000008536.1 (SMESG000008536.1) HSP 1 Score: 60.8474 bits (146), Expect = 2.961e-9 Identity = 35/104 (33.65%), Postives = 52/104 (50.00%), Query Frame = -2 Query: 1984 LNESLPMFFG*VEIW*KRLRNSTGKSQTAMDHIKTCPQEMFPNVFKLLKIYNMISVTTADV*SSFSQMKQLKTEDRNTTGEERLSGLMF*SINRDNRVLFEEFI 2295 L S P +++W R K + +D IK+C FPNV KLL I + VT + S++ +KT D T E+RL+GL+ +I RD + EE + Sbjct: 305 LQASAPQLRAEIKMWSLRFSKLVEKPNSIIDQIKSCNSTFFPNVLKLLSILVALPVTNCTLERRLSKLNLIKTFDGATMTEDRLNGLVLLNIYRDESIEIEEVL 408 The following BLAST results are available for this feature:
BLAST of SMED30030820 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30030820 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30030820 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30030820 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of SMED30030820 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30030820 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30030820 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30030820 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30030820 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30030820 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30030820 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30030820 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of SMED30030820 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30030820 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30030820 ID=SMED30030820|Name=SMED30030820|organism=Schmidtea mediterranea sexual|type=transcript|length=2902bpback to top protein sequence of SMED30030820-orf-1 >SMED30030820-orf-1 ID=SMED30030820-orf-1|Name=SMED30030820-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=490bp MFNKTVLEKLGFIITFSALAFAFLVSYGKVAIILGKSATYKDVSTPLNVIback to top Annotated Terms
The following terms have been associated with this transcript:
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