G-patch domain-containing protein

Overview


Name	G-patch domain-containing protein
Smed ID	SMED30030755
Length (bp)	1624

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of G-patch domain-containing protein (SMED30030755) t-SNE clustered cells

Violin plots show distribution of expression levels for G-patch domain-containing protein (SMED30030755) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of G-patch domain-containing protein (SMED30030755) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for G-patch domain-containing protein (SMED30030755) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30030755

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
nervous system	SMED30030755	SMESG000074499.1	dd_Smed_v4_3010_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30030755	SMESG000074499.1	dd_Smed_v4_3010_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30030755	SMESG000074499.1	dd_Smed_v4_3010_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Human
Match: SUGP1 (SURP and G-patch domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18643])

HSP 1 Score: 226.098 bits (575), Expect = 1.753e-65
Identity = 109/206 (52.91%), Postives = 154/206 (74.76%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+D+QK+Q++ Q+E+Q M++ I   ++A ++ +L+   A          + Q +  YDSDE++    GTWEH+LR+ EM+ TREWA++L +MG+GKH IGDFLPP+EL++FMETF ALKEGREP+YS+Y  FK+T EN+G++ML KMGWKEG+GLG EGQGIK P+  G    D  G G+ + ++L++ DDEY+A+RKRMMLAYRF
Sbjct:  437 LSDAQKKQLKEQQEMQQMYDMIMQHKRAMQDMQLLWEKA----------VQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLGSEGQGIKNPVNKGTTTVDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRF 632

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Human
Match: SUGP2 (SURP and G-patch domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18641])

HSP 1 Score: 67.0106 bits (162), Expect = 6.129e-11
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 3

Query: 1206 LKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNG-PVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            + + ++P   D+   K+T +N+GF+ML+KMGWKEG GLG  G+GI+ P+  G P + + +G    +       +D +D +R+RMM  YR
Sbjct: 1007 MSKKKKPKDLDFAQQKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHK-----EDTFDVFRQRMMQMYR 1090

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Human
Match: SUGP2 (SURP and G-patch domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18641])

HSP 1 Score: 67.0106 bits (162), Expect = 6.598e-11
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 3

Query: 1206 LKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNG-PVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            + + ++P   D+   K+T +N+GF+ML+KMGWKEG GLG  G+GI+ P+  G P + + +G    +       +D +D +R+RMM  YR
Sbjct:  993 MSKKKKPKDLDFAQQKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHK-----EDTFDVFRQRMMQMYR 1076

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Human
Match: SUGP2 (SURP and G-patch domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18641])

HSP 1 Score: 67.0106 bits (162), Expect = 6.598e-11
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 3

Query: 1206 LKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNG-PVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            + + ++P   D+   K+T +N+GF+ML+KMGWKEG GLG  G+GI+ P+  G P + + +G    +       +D +D +R+RMM  YR
Sbjct:  993 MSKKKKPKDLDFAQQKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHK-----EDTFDVFRQRMMQMYR 1076

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Human
Match: SUGP2 (SURP and G-patch domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18641])

HSP 1 Score: 67.0106 bits (162), Expect = 6.598e-11
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 3

Query: 1206 LKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNG-PVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            + + ++P   D+   K+T +N+GF+ML+KMGWKEG GLG  G+GI+ P+  G P + + +G    +       +D +D +R+RMM  YR
Sbjct:  993 MSKKKKPKDLDFAQQKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHK-----EDTFDVFRQRMMQMYR 1076

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Fly
Match: CG31550 (gene:FBgn0051550 transcript:FBtr0078684)

HSP 1 Score: 204.527 bits (519), Expect = 6.919e-57
Identity = 90/154 (58.44%), Postives = 118/154 (76.62%), Query Frame = 3

Query: 1011 GQFKFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            G+FK+EYDSDEDI+ GTWEH+LR  EMEAT  WA+ L +  +GKHHIGDFLPPEEL +FME + A K  R+P+ SDY  +K+  +N+GF+ML+K+GWKEG GLG +G GI  P+   P ++ N G+GV+  ++  + D+EYDAYRKRMMLAYRF
Sbjct:  666 GKFKYEYDSDEDIEGGTWEHKLRTAEMEATSLWANALTKQSEGKHHIGDFLPPEELKKFMEQYEAKKNNRQPDLSDYKEYKLKEDNIGFQMLQKLGWKEGQGLGQDGAGIVDPVNKAPQRDGNQGLGVSSAAQPEDCDNEYDAYRKRMMLAYRF 819

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Fly
Match: CG31550 (gene:FBgn0051550 transcript:FBtr0336770)

HSP 1 Score: 204.527 bits (519), Expect = 7.176e-57
Identity = 90/154 (58.44%), Postives = 118/154 (76.62%), Query Frame = 3

Query: 1011 GQFKFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            G+FK+EYDSDEDI+ GTWEH+LR  EMEAT  WA+ L +  +GKHHIGDFLPPEEL +FME + A K  R+P+ SDY  +K+  +N+GF+ML+K+GWKEG GLG +G GI  P+   P ++ N G+GV+  ++  + D+EYDAYRKRMMLAYRF
Sbjct:  669 GKFKYEYDSDEDIEGGTWEHKLRTAEMEATSLWANALTKQSEGKHHIGDFLPPEELKKFMEQYEAKKNNRQPDLSDYKEYKLKEDNIGFQMLQKLGWKEGQGLGQDGAGIVDPVNKAPQRDGNQGLGVSSAAQPEDCDNEYDAYRKRMMLAYRF 822

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Fly
Match: CG4896 (gene:FBgn0031319 transcript:FBtr0344790)

HSP 1 Score: 51.6026 bits (122), Expect = 1.941e-6
Identity = 28/98 (28.57%), Postives = 52/98 (53.06%), Query Frame = 3

Query: 1164 PPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMM 1457
            P    +RF +    L+  ++ ++       I+  NVG ++++KMGW EG GLG + QG +  +     +++N+G+G      +   +D Y +Y K+MM
Sbjct:  846 PNRSRERFEQEIKTLQSRQKDSFGATAAMPISSTNVGSRLMQKMGWSEGQGLGKKNQG-RTEIIEADGRSNNVGLG-NNTGHMAPGND-YKSYIKKMM 940

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Fly
Match: CG4896 (gene:FBgn0031319 transcript:FBtr0077968)

HSP 1 Score: 51.6026 bits (122), Expect = 1.942e-6
Identity = 28/98 (28.57%), Postives = 52/98 (53.06%), Query Frame = 3

Query: 1164 PPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMM 1457
            P    +RF +    L+  ++ ++       I+  NVG ++++KMGW EG GLG + QG +  +     +++N+G+G      +   +D Y +Y K+MM
Sbjct:  848 PNRSRERFEQEIKTLQSRQKDSFGATAAMPISSTNVGSRLMQKMGWSEGQGLGKKNQG-RTEIIEADGRSNNVGLG-NNTGHMAPGND-YKSYIKKMM 942

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Fly
Match: CG4887 (gene:FBgn0031318 transcript:FBtr0077966)

HSP 1 Score: 50.8322 bits (120), Expect = 3.500e-6
Identity = 30/98 (30.61%), Postives = 53/98 (54.08%), Query Frame = 3

Query: 1164 PPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMM 1457
            P    +RF +    L+  ++ + S      I+  NVG ++L+KMGW EG GLG + QG +  +     +++ +G+G  K  ++   +D Y +Y K+MM
Sbjct:  903 PNRSRERFEQEIKTLQSRQKQSTSATPAMPISSSNVGSRLLQKMGWSEGQGLGRKNQG-RTQIIEADGRSNYVGLG-NKSGQMIPGND-YKSYIKKMM 997

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Zebrafish
Match: rbm5 (RNA binding motif protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-3022])

HSP 1 Score: 53.1434 bits (126), Expect = 7.202e-7
Identity = 32/81 (39.51%), Postives = 41/81 (50.62%), Query Frame = 3

Query: 1227 NYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMS-KLTEFDDEYDAYRKRMMLAY 1466
            NY   T   +  +N+G KML+ MGWKEG GLG   QGI  P+    ++    G+G    S  LT  D   DA RK M   +
Sbjct:  749 NYEQPTKDGLNSDNIGNKMLQAMGWKEGKGLGRNQQGITTPI-EAQLRAKGAGLGTKGSSYNLTASDTYKDAVRKAMFARF 828

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Xenopus
Match: abcd3 (ATP binding cassette subfamily D member 3 [Source:Xenbase;Acc:XB-GENE-983902])

HSP 1 Score: 231.106 bits (588), Expect = 9.843e-68
Identity = 113/206 (54.85%), Postives = 154/206 (74.76%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+++QK+Q++ Q+E+Q M+  I   ++A +E +LM   A          + Q + EYDSDE++ +  GTWEH+LR+ EM+ TREWA++L EMG+GKH IGDFLPP+EL++FMETF ALKEGREP+YS+Y  FK+T EN+G++ML KMGWKEG+GLG EGQGIK P+  G    D  G G+ + ++L + DDEYDA+RKRMMLAYRF
Sbjct:  409 LSEAQKKQLKEQQEMQQMYNMIMTHKRAMQEVQLMWEKA----------IKQHQHEYDSDEEVDNEFGTWEHQLRRMEMDKTREWAEELTEMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENLGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGTTAVDGAGFGIDRPAELNKGDDEYDAFRKRMMLAYRF 604

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Xenopus
Match: abcd3 (ATP binding cassette subfamily D member 3 [Source:Xenbase;Acc:XB-GENE-983902])

HSP 1 Score: 231.106 bits (588), Expect = 1.369e-67
Identity = 113/206 (54.85%), Postives = 154/206 (74.76%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+++QK+Q++ Q+E+Q M+  I   ++A +E +LM   A          + Q + EYDSDE++ +  GTWEH+LR+ EM+ TREWA++L EMG+GKH IGDFLPP+EL++FMETF ALKEGREP+YS+Y  FK+T EN+G++ML KMGWKEG+GLG EGQGIK P+  G    D  G G+ + ++L + DDEYDA+RKRMMLAYRF
Sbjct:  409 LSEAQKKQLKEQQEMQQMYNMIMTHKRAMQEVQLMWEKA----------IKQHQHEYDSDEEVDNEFGTWEHQLRRMEMDKTREWAEELTEMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENLGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGTTAVDGAGFGIDRPAELNKGDDEYDAFRKRMMLAYRF 604

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Xenopus
Match: abcd3 (ATP binding cassette subfamily D member 3 [Source:Xenbase;Acc:XB-GENE-983902])

HSP 1 Score: 230.72 bits (587), Expect = 1.519e-67
Identity = 113/206 (54.85%), Postives = 154/206 (74.76%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+++QK+Q++ Q+E+Q M+  I   ++A +E +LM   A          + Q + EYDSDE++ +  GTWEH+LR+ EM+ TREWA++L EMG+GKH IGDFLPP+EL++FMETF ALKEGREP+YS+Y  FK+T EN+G++ML KMGWKEG+GLG EGQGIK P+  G    D  G G+ + ++L + DDEYDA+RKRMMLAYRF
Sbjct:  409 LSEAQKKQLKEQQEMQQMYNMIMTHKRAMQEVQLMWEKA----------IKQHQHEYDSDEEVDNEFGTWEHQLRRMEMDKTREWAEELTEMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENLGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGTTAVDGAGFGIDRPAELNKGDDEYDAFRKRMMLAYRF 604

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Xenopus
Match: abcd3 (ATP binding cassette subfamily D member 3 [Source:Xenbase;Acc:XB-GENE-983902])

HSP 1 Score: 230.335 bits (586), Expect = 1.958e-67
Identity = 113/206 (54.85%), Postives = 154/206 (74.76%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+++QK+Q++ Q+E+Q M+  I   ++A +E +LM   A          + Q + EYDSDE++ +  GTWEH+LR+ EM+ TREWA++L EMG+GKH IGDFLPP+EL++FMETF ALKEGREP+YS+Y  FK+T EN+G++ML KMGWKEG+GLG EGQGIK P+  G    D  G G+ + ++L + DDEYDA+RKRMMLAYRF
Sbjct:  403 LSEAQKKQLKEQQEMQQMYNMIMTHKRAMQEVQLMWEKA----------IKQHQHEYDSDEEVDNEFGTWEHQLRRMEMDKTREWAEELTEMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENLGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGTTAVDGAGFGIDRPAELNKGDDEYDAFRKRMMLAYRF 598

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Xenopus
Match: stox1 (storkhead box 1 [Source:Xenbase;Acc:XB-GENE-1012540])

HSP 1 Score: 68.5514 bits (166), Expect = 1.750e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 3

Query: 1218 REPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGV-TKMSKLTEFDDEYDAYRKRMMLAYR 1469
            ++P+  ++   K+T  NVGF+ML KMGWKEG GLG  G GIK P+  G + +   G+GV +  S  T F    DA+R+RMM  YR
Sbjct:  888 KKPSDLEFANKKLTEGNVGFQMLSKMGWKEGQGLGTSGSGIKNPVKVGSISSGE-GLGVESGESSETNF----DAFRQRMMQMYR 967

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Mouse
Match: Sugp1 (SURP and G patch domain containing 1 [Source:MGI Symbol;Acc:MGI:1917866])

HSP 1 Score: 228.024 bits (580), Expect = 1.889e-66
Identity = 110/206 (53.40%), Postives = 154/206 (74.76%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+D+QK+Q++ Q+E+Q M++ I   ++A ++ +L+   A          L Q +  YDSDE++    GTWEH+LR+ EM+ TREWA++L +MG+GKH IGDFLPP+EL++FMETF ALKEGREP+YS+Y  FK+T EN+G++ML KMGWKEG+GLG EGQGIK P+  G    D  G G+ + ++L++ DDEY+A+RKRMMLAYRF
Sbjct:  435 LSDAQKKQLKEQQEMQQMYDMIMQHKRAMQDMQLLWEKA----------LQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTQMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGATTIDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRF 630

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Mouse
Match: Sugp2 (SURP and G patch domain containing 2 [Source:MGI Symbol;Acc:MGI:2678085])

HSP 1 Score: 65.855 bits (159), Expect = 1.311e-11
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 3

Query: 1218 REPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            ++P   +++  K+T +NVGF+ML+KMGWKEG GLG  G+GI+ P+  G + ++  G+G        + +D +D +R+RMM  YR
Sbjct:  159 KKPKDMEFSQQKLTDKNVGFQMLQKMGWKEGHGLGSLGKGIREPVSVGAL-SEGEGLGA---DGPEQKEDTFDVFRQRMMQMYR 238

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Mouse
Match: Sugp2 (SURP and G patch domain containing 2 [Source:MGI Symbol;Acc:MGI:2678085])

HSP 1 Score: 67.0106 bits (162), Expect = 4.791e-11
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = 3

Query: 1206 LKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            + + ++P   +++  K+T +NVGF+ML+KMGWKEG GLG  G+GI+ P+  G + ++  G+G     +    +D +D +R+RMM  YR
Sbjct:  978 IAKKKKPKDMEFSQQKLTDKNVGFQMLQKMGWKEGHGLGSLGKGIREPVSVGAL-SEGEGLGADGPEQK---EDTFDVFRQRMMQMYR 1061

[Close]

Query: 1206 LKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            + + ++P   +++  K+T +NVGF+ML+KMGWKEG GLG  G+GI+ P+  G + ++  G+G     +    +D +D +R+RMM  YR
Sbjct:  978 IAKKKKPKDMEFSQQKLTDKNVGFQMLQKMGWKEGHGLGSLGKGIREPVSVGAL-SEGEGLGADGPEQK---EDTFDVFRQRMMQMYR 1061

[Close]

Query: 1206 LKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            + + ++P   +++  K+T +NVGF+ML+KMGWKEG GLG  G+GI+ P+  G + ++  G+G     +    +D +D +R+RMM  YR
Sbjct:  978 IAKKKKPKDMEFSQQKLTDKNVGFQMLQKMGWKEGHGLGSLGKGIREPVSVGAL-SEGEGLGADGPEQK---EDTFDVFRQRMMQMYR 1061

[Close]

BLAST of G-patch domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8CH02|SUGP1_MOUSE (SURP and G-patch domain-containing protein 1 OS=Mus musculus OX=10090 GN=Sugp1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.321e-65
Identity = 110/206 (53.40%), Postives = 154/206 (74.76%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+D+QK+Q++ Q+E+Q M++ I   ++A ++ +L+   A          L Q +  YDSDE++    GTWEH+LR+ EM+ TREWA++L +MG+GKH IGDFLPP+EL++FMETF ALKEGREP+YS+Y  FK+T EN+G++ML KMGWKEG+GLG EGQGIK P+  G    D  G G+ + ++L++ DDEY+A+RKRMMLAYRF
Sbjct:  435 LSDAQKKQLKEQQEMQQMYDMIMQHKRAMQDMQLLWEKA----------LQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTQMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGATTIDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRF 630

[Close]

BLAST of G-patch domain-containing protein vs. UniProt/SwissProt
Match: sp|Q68FU8|SUGP1_RAT (SURP and G-patch domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Sugp1 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 2.232e-65
Identity = 110/206 (53.40%), Postives = 154/206 (74.76%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+D+QK+Q++ Q+E+Q M++ I   ++A ++ +L+   A          L Q +  YDSDE++    GTWEH+LR+ EM+ TREWA++L +MG+GKH IGDFLPP+EL++FMETF ALKEGREP+YS+Y  FK+T EN+G++ML KMGWKEG+GLG EGQGIK P+  G    D  G G+ + ++L++ DDEY+A+RKRMMLAYRF
Sbjct:  436 LSDAQKKQLKEQQEMQQMYDMIMQHKRAMQDMQLLWEKA----------LQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTQMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLGTEGQGIKNPVNKGATTIDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRF 631

[Close]

BLAST of G-patch domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8IWZ8|SUGP1_HUMAN (SURP and G-patch domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SUGP1 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 8.420e-65
Identity = 109/206 (52.91%), Postives = 154/206 (74.76%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+D+QK+Q++ Q+E+Q M++ I   ++A ++ +L+   A          + Q +  YDSDE++    GTWEH+LR+ EM+ TREWA++L +MG+GKH IGDFLPP+EL++FMETF ALKEGREP+YS+Y  FK+T EN+G++ML KMGWKEG+GLG EGQGIK P+  G    D  G G+ + ++L++ DDEY+A+RKRMMLAYRF
Sbjct:  437 LSDAQKKQLKEQQEMQQMYDMIMQHKRAMQDMQLLWEKA----------VQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTREWAEQLTKMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGYQMLMKMGWKEGEGLGSEGQGIKNPVNKGTTTVDGAGFGIDRPAELSKEDDEYEAFRKRMMLAYRF 632

[Close]

BLAST of G-patch domain-containing protein vs. UniProt/SwissProt
Match: sp|Q94C11|SUGP1_ARATH (SURP and G-patch domain-containing protein 1-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g52120 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.618e-20
Identity = 55/143 (38.46%), Postives = 81/143 (56.64%), Query Frame = 3

Query: 1071 RLRKEEME--ATREWADKLNEMGQGK--HHIGDFLPPEELDRFMETF------WALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            R  K+EM   A+ +   + +    GK  HH+GD++P EELD+F+          A KE  E         KI  +NVG K+L KMGWKEG+G+G   +G+  P+  G VK +N+G+G +   ++   DD Y+ Y+KRMML Y+
Sbjct:  294 RQSKDEMPPPASLQGPSETSSTDPGKRGHHMGDYIPLEELDKFLSKCNDAAAQKATKEAAE-------KAKIQADNVGHKLLSKMGWKEGEGIGSSRKGMADPIMAGDVKTNNLGVGASAPGEVKPEDDIYEQYKKRMMLGYK 429

[Close]

BLAST of G-patch domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8IX01|SUGP2_HUMAN (SURP and G-patch domain-containing protein 2 OS=Homo sapiens OX=9606 GN=SUGP2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.169e-10
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 3

Query: 1206 LKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNG-PVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYR 1469
            + + ++P   D+   K+T +N+GF+ML+KMGWKEG GLG  G+GI+ P+  G P + + +G    +       +D +D +R+RMM  YR
Sbjct:  993 MSKKKKPKDLDFAQQKLTDKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGADGQEHK-----EDTFDVFRQRMMQMYR 1076

[Close]

BLAST of G-patch domain-containing protein vs. TrEMBL
Match: A0A504YNV2 (SURP and G-patch domain-containing protein 1 OS=Fasciola gigantica OX=46835 GN=FGIG_09366 PE=4 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 2.308e-95
Identity = 176/353 (49.86%), Postives = 227/353 (64.31%), Query Frame = 3

Query:  492 VEDDTDGIITPEDPKILIAIENLVNQASLLPHDLQVTYIKQFEDQEEYWFLTLADSVEYSYFHWRLEQAKQDYLKKIEQXXXXXXXXXXXXXXXXXXXXXXXXXWNTEIPKMILIPVISQNS---------------------QILTDSQKQQVEYQKELQAMHEFITAQQKAK--EQELMNSIAGVKYGQAK--TKLG-QFKFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
             + + D  + P DPK+L+AIE LV +   +   L    IK+FED  +YWFLTL ++ EY +F  RL + ++ +         ++                      +EIP+  L  V+S N+                      +LT+ Q +Q+ YQKELQAMHEFI AQQK K  EQELM+ IAG +YG+    TK G   K+EYDSDED++ GTWEH+LR  EMEAT+EWA+KL EMG GKHHIGDFLPP+EL+RFMETF ALKEGR+P+ S+Y  FK+TCENVGF+ML+KMGWKEG+GLG +G+GI  P+  G V  D IG+G+ + S LT+ DDEYDAYRKRMMLAYRF
Sbjct:   20 TDHEIDSSVPPSDPKVLVAIETLVLRLRGMSSGLCEAEIKKFEDSVQYWFLTLPETNEYRFFRRRLREVRRPHASAPTVPTASAKVKVEFEL--------------SEIPRQYLTVVMSLNAGLFFLYFTSAQAVGAKMFTGGTVLTEEQAEQIRYQKELQAMHEFIIAQQKLKLKEQELMDRIAGPQYGKKARVTKDGLVIKYEYDSDEDVEGGTWEHKLRMAEMEATKEWAEKLTEMGHGKHHIGDFLPPDELERFMETFHALKEGRDPDLSEYKQFKLTCENVGFRMLEKMGWKEGEGLGNDGKGILNPVGKGNVHIDGIGLGINRQSNLTKEDDEYDAYRKRMMLAYRF 358

[Close]

BLAST of G-patch domain-containing protein vs. TrEMBL
Match: A0A564YK52 (G-patch domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS6373 PE=4 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 4.955e-93
Identity = 146/208 (70.19%), Postives = 173/208 (83.17%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQK--AKEQELMNSIAGVKYGQ--AKTKLG-QFKFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+D Q +Q++YQKELQAMHEFI AQQK  A+EQELMNSI+GV Y +   KT  G + K++YDSDED + GTWEH+LR  EMEATREWA+KL EMGQGKHHIGDFLPP+EL+RFMET+ ALKEGREP+YSDY  FK+TCENVGFKML+KMGWKEG+GLG  GQGI  P+  G V  D +G+G+ + SKLTE DDE++AYRKRMMLAYRF
Sbjct:  249 LSDEQIKQIQYQKELQAMHEFILAQQKLKAQEQELMNSISGVNYSKNPKKTVDGLEIKYDYDSDEDCEGGTWEHKLRAAEMEATREWAEKLTEMGQGKHHIGDFLPPDELERFMETYRALKEGREPDYSDYKNFKLTCENVGFKMLEKMGWKEGEGLGPTGQGIVNPVDRGNVHVDGVGLGIERPSKLTEDDDEFEAYRKRMMLAYRF 456

HSP 2 Score: 73.1738 bits (178), Expect = 6.125e-10
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 3

Query:  309 LPFKSDGSFIEQFKKMRDYGDYELENSTEKLKEIQESCKPNGETIAC----KIEPKISPRKSSKCVEDDTDGIITPEDPKILIAIENLVNQASLLPHDLQVTYIKQFEDQEEYWFLTLADSVEYSYFHWRLEQ 695
            LPFK+DGSF+E FK+++   +     ++  +   + S   +  T A      I PKISP                PED K  IAIE+LV + + LP  L  + I +FED  +YWFLT+ DS EY YF  RL++
Sbjct:    5 LPFKNDGSFMEIFKQLQAEQERAALGASLNINSSKSSKNESSITNAPFNLDVILPKISP----------------PEDHKNTIAIESLVMRVAGLPQSLADSEIAKFEDSVQYWFLTVTDSTEYKYFQKRLQE 121

[Close]

BLAST of G-patch domain-containing protein vs. TrEMBL
Match: A0A0R3T349 (G-patch domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS1411 PE=4 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 2.039e-91
Identity = 143/209 (68.42%), Postives = 173/209 (82.78%), Query Frame = 3

Query:  861 ILTDSQKQQVEYQKELQAMHEFITAQQK--AKEQELMNSIAGVKYGQAKTKLG---QFKFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            +L+D Q +Q++YQKELQAMHEFI AQQK  A+EQELMNSIAGV Y +   K+    + K+EYDSDED + GTWEH+LR  EMEATREWA+KL EMGQGKHHIGDFLPP+EL+RFMET+ ALKEGREP++SDY  FK+TCENVG+KML+KMGWKEG+GLG  G+GI  P+  G V  D +G+G+ + SKLTE DDE++AYRKRMMLAYRF
Sbjct:  350 VLSDEQIKQIQYQKELQAMHEFILAQQKLKAQEQELMNSIAGVNYSKKAKKVVDGLEVKYEYDSDEDCEGGTWEHKLRAAEMEATREWAEKLTEMGQGKHHIGDFLPPDELERFMETYRALKEGREPDFSDYKNFKLTCENVGYKMLEKMGWKEGEGLGPTGEGIVNPVDRGNVHVDGVGLGIERPSKLTEGDDEFEAYRKRMMLAYRF 558

HSP 2 Score: 62.3882 bits (150), Expect = 1.908e-6
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 3

Query:  513 IITPEDPKILIAIENLVNQASLLPHDLQVTYIKQFEDQEEYWFLTLADSVEYSYFHWRLE 692
            +  PED K +IAIE+LV + + LP  L  + I +F+D  +YWFLT+ DS EY YF  RL+
Sbjct:  159 VPPPEDHKDIIAIESLVMRVAGLPQPLADSEIAKFDDSIQYWFLTVTDSTEYKYFQKRLQ 218

[Close]

BLAST of G-patch domain-containing protein vs. TrEMBL
Match: A0A430QHG3 (Splicing factor 4 OS=Schistosoma bovis OX=6184 GN=DC041_0003511 PE=4 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 1.286e-90
Identity = 140/210 (66.67%), Postives = 170/210 (80.95%), Query Frame = 3

Query:  861 ILTDSQKQQVEYQKELQAMHEFITAQQ--KAKEQELMNSIAGVKYGQAKTKLGQ----FKFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            +LT  Q +Q+ YQKELQAM EFI AQ+  K+KE+ELMN I GV YG  KT++ +     K+EYDSDED ++GTWEH+LR+ EMEATREWA KL EMG GKHHIGDFLPP+EL+RFMETF ALKEGREP++S+Y  FK+TCENVGF+ML+KMGWKEG+GLG +GQGI  P+  G V  D +G+G+ + SKL + DDEYDAYRKRMMLAYRF
Sbjct:   20 VLTPEQAEQIRYQKELQAMQEFILAQKRSKSKEEELMNRIEGVNYGN-KTRITKDGLVIKYEYDSDEDCENGTWEHKLRQAEMEATREWAQKLTEMGHGKHHIGDFLPPDELERFMETFRALKEGREPDFSEYKQFKLTCENVGFQMLEKMGWKEGEGLGIDGQGIVNPVNKGNVHVDGVGLGIDRPSKLIKEDDEYDAYRKRMMLAYRF 228

[Close]

BLAST of G-patch domain-containing protein vs. TrEMBL
Match: A0A183SMG8 (G-patch domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS5416 PE=4 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 2.338e-90
Identity = 171/333 (51.35%), Postives = 212/333 (63.66%), Query Frame = 3

Query:  513 IITPEDPKILIAIENLVNQASLLPHDLQVTYIKQFEDQEEYWFLTLADSVEYSYFHWRL---EQAKQDYLKKIEQXXXXXXXXXXXXXXXXXXXXXXXXXWNTEIPKMILIPVISQNSQI-LTDSQKQQVEYQKE----LQAMHEFITAQQKAK--EQELMNSIAGVKYGQAK--TKLGQF-KFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            +  P++ ++LIAIE+LV + + L  +L    I +FED  +YWFLTL ++ EY +F  RL    + ++   KK E                                         Q+SQ     SQK++  +  E    LQAMHEFI AQQK K  EQ+LM SIAGVKY +    T  G   K+EYDSDED + GTWEH+LR  EMEAT+EWA+KL EMGQGKHHIGDFLPP+ELDRFMET+ ALKEGREP+YSDY  FK+TCENVGF+ML+KMGWKEG+GLG  GQGI  P+  G V  D +G+GV + + L + DDEYDAYRKRMMLAYRF
Sbjct:    3 VPPPDNQQVLIAIESLVMRVAGLTPELGRMEIAKFEDSIQYWFLTLPETDEYKFFQKRLLEERKKRKPQFKKAE----------------------------------------DQSSQAEAIRSQKRKSRWDSEPVEKLQAMHEFILAQQKLKFQEQQLMESIAGVKYSKKPKYTPDGLLIKYEYDSDEDCEGGTWEHKLRAAEMEATKEWAEKLTEMGQGKHHIGDFLPPDELDRFMETYRALKEGREPDYSDYKNFKLTCENVGFQMLEKMGWKEGEGLGASGQGIINPVGKGNVFVDGVGLGVERPANLKQDDDEYDAYRKRMMLAYRF 295

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Cavefish
Match: SUGP1 (SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:103022211])

HSP 1 Score: 235.343 bits (599), Expect = 2.063e-69
Identity = 116/206 (56.31%), Postives = 152/206 (73.79%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDI--QDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L++ QK+Q++ Q+E+Q M + I   ++A +E ++M   A          +   + EYDSDE++  Q GTWEHRLRK EME TREWA++L EMG+GKH IGDFLPP+EL++FMETF ALKEGR+P+YS+Y  FK+T EN+GFKML KMGWKEG+GLG E QGIK P+  G    D  G GV + ++L++ DDEYDA+RKRMMLAYRF
Sbjct:  415 LSEDQKRQLKEQQEMQEMFDMIMKHKRAMQEMQVMWEKA----------VRDHQHEYDSDEEVDSQAGTWEHRLRKMEMEKTREWAEQLTEMGKGKHFIGDFLPPDELEKFMETFKALKEGRDPDYSEYKEFKLTVENIGFKMLMKMGWKEGEGLGSESQGIKNPVNRGTTAVDGAGFGVDRPAELSKNDDEYDAFRKRMMLAYRF 610

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Cavefish
Match: SUGP1 (SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:103022211])

HSP 1 Score: 233.802 bits (595), Expect = 9.711e-69
Identity = 116/206 (56.31%), Postives = 152/206 (73.79%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDI--QDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L++ QK+Q++ Q+E+Q M + I   ++A +E ++M   A          +   + EYDSDE++  Q GTWEHRLRK EME TREWA++L EMG+GKH IGDFLPP+EL++FMETF ALKEGR+P+YS+Y  FK+T EN+GFKML KMGWKEG+GLG E QGIK P+  G    D  G GV + ++L++ DDEYDA+RKRMMLAYRF
Sbjct:  423 LSEDQKRQLKEQQEMQEMFDMIMKHKRAMQEMQVMWEKA----------VRDHQHEYDSDEEVDSQAGTWEHRLRKMEMEKTREWAEQLTEMGKGKHFIGDFLPPDELEKFMETFKALKEGRDPDYSEYKEFKLTVENIGFKMLMKMGWKEGEGLGSESQGIKNPVNRGTTAVDGAGFGVDRPAELSKNDDEYDAFRKRMMLAYRF 618

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Cavefish
Match: rbm5 (RNA-binding protein 5 [Source:NCBI gene;Acc:103023872])

HSP 1 Score: 51.9878 bits (123), Expect = 1.426e-6
Identity = 30/81 (37.04%), Postives = 40/81 (49.38%), Query Frame = 3

Query: 1227 NYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEY-DAYRKRMMLAY 1466
            NY   T   +  +N+G KML+ MGWKEG GLG   QGI  P+    ++    G+G    +      D Y DA RK M   +
Sbjct:  624 NYEQPTKDGLNSDNIGNKMLQAMGWKEGKGLGRNQQGITAPI-EAQLRMKGAGLGTKGSNYTLSASDTYKDAVRKAMFARF 703

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Cavefish
Match: gpatch11 (G-patch domain containing 11 [Source:NCBI gene;Acc:103025659])

HSP 1 Score: 48.1358 bits (113), Expect = 9.815e-6
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 3

Query: 1254 ITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMML 1460
            I+ EN GF +L+KMG+K G GLG EG G   P+    +K D  GIG+ ++ K  +  +E + +RK++ +
Sbjct:   68 ISTENKGFALLQKMGYKAGQGLGREGSGRVDPIPLN-IKTDRGGIGLEELKK-RKAAEELEHHRKKVQI 134

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Sea Lamprey
Match: SUGP1 (SURP and G-patch domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18643])

HSP 1 Score: 242.662 bits (618), Expect = 6.155e-73
Identity = 122/206 (59.22%), Postives = 155/206 (75.24%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKA-KEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQD--GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L+D QK+Q++ Q+E+Q M++ I A ++A  E E M + A          L + + EYDSDE+I D  GTWEHRLRK EME TREWA+KL +M +GKH IGDFLPP+ELD+FMETF ALKEGR+P+YSDY  FK+T EN+GF+ML KMGWKEGDGLG EG+GIK P+  G V  D  G G+ + ++L++ DDEYDA+RKRMMLAYRF
Sbjct:  407 LSDDQKKQLKEQQEMQQMYDMIIAHKRAMAEIETMWAAA----------LKKNQHEYDSDEEIDDEAGTWEHRLRKMEMEKTREWAEKLTDMNRGKHFIGDFLPPDELDKFMETFKALKEGRDPDYSDYKDFKLTVENLGFQMLMKMGWKEGDGLGTEGKGIKTPVNKGTVAIDKAGFGIDRPAELSKSDDEYDAFRKRMMLAYRF 602

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002233.1 (pep scaffold:Pmarinus_7.0:GL477379:17971:46302:-1 gene:ENSPMAG00000001998.1 transcript:ENSPMAT00000002233.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 49.6766 bits (117), Expect = 1.494e-6
Identity = 29/82 (35.37%), Postives = 41/82 (50.00%), Query Frame = 3

Query: 1227 NYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            +Y   T   I  +N+G KML+ MGW EG GLG + QGI +P+     +    G+G    +      D Y    +R M+A RF
Sbjct:  817 DYEQPTKAGIGGDNIGSKMLQAMGWTEGSGLGKKHQGITLPV-EAKKRTQGAGLGARGATYGASAADTYKDQVRRAMMA-RF 896

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Nematostella
Match: EDO45757 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RS69])

HSP 1 Score: 160.229 bits (404), Expect = 9.339e-44
Identity = 81/154 (52.60%), Postives = 108/154 (70.13%), Query Frame = 3

Query: 1023 FEYDSDEDI-QDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALK--EGREP-NYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            +EYDSDE+I ++GTWEH+ RK EM  T E A KL E  QGKHHIGDFLPP+EL +F+     +K  +G E  + SDY  FK+T +N+G++MLKK GW+EG GLG +GQGI  P+  G    +  G+G   + ++ E DDE++ YRKRMMLAY+F
Sbjct:  261 YEYDSDEEIDEEGTWEHKRRKMEMWKTAEEAKKLTEQAQGKHHIGDFLPPDELKKFIAKVKQVKGEKGLEDIDLSDYAEFKLTEDNIGYQMLKKAGWEEGKGLGSKGQGITAPIDKGRTPGEIGGLGEAPVGEIEEQDDEFEMYRKRMMLAYKF 414

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Nematostella
Match: EDO26629 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TBH8])

HSP 1 Score: 90.5077 bits (223), Expect = 9.387e-22
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 3

Query: 1227 NYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            + SDY  FK+T +N+G++MLKK GW+EG GLG +GQGI  P+  G    +  G+G   + ++ E DDE++ YRKRMMLAY+F
Sbjct:   35 DLSDYAEFKLTEDNIGYQMLKKAGWEEGKGLGSKGQGITAPIDKGRTPGEIGGLGEAPVGEIEEQDDEFEMYRKRMMLAYKF 116

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Nematostella
Match: EDO48106 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RK53])

HSP 1 Score: 56.9954 bits (136), Expect = 1.369e-8
Identity = 33/81 (40.74%), Postives = 43/81 (53.09%), Query Frame = 3

Query: 1230 YSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            Y   T  KI   N+G +MLK MGW EG GLG EGQGI  P+    +++ N G+G    S  +    E D  R+R +   RF
Sbjct:  903 YEQPTKAKIPENNIGNQMLKAMGWSEGRGLGKEGQGIVNPI-QATMRSQNAGLGSRGSSYGSVTGGESDRERQRKLAYSRF 982

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Medaka
Match: SUGP1 (SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:101172529])

HSP 1 Score: 233.802 bits (595), Expect = 5.981e-69
Identity = 116/205 (56.59%), Postives = 153/205 (74.63%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKAKEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDI-QD-GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L++ QK+Q++ Q+E+Q M++ I   ++A   E+ N          +  + + + EYDSDE++ QD GTWEH+LRK EME TREWA+ L EMG+GKH IGDFLPPEEL++FMETF ALKEGR+P+YS+Y  FK+T EN+GF+ML KMGWKEG+GLG EGQGIK P+  G    +  G GV + ++LT+ DDEYDA+RKRMMLAYRF
Sbjct:  413 LSEDQKRQLKEQQEMQEMYDMIMKHKRAM-AEMQN--------MWEKAIKEHQHEYDSDEEVDQDAGTWEHQLRKMEMEKTREWAESLTEMGKGKHFIGDFLPPEELEKFMETFKALKEGRDPDYSEYKEFKLTVENLGFRMLMKMGWKEGEGLGSEGQGIKAPVNKGITATNGGGFGVDRPAELTKSDDEYDAFRKRMMLAYRF 608

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Medaka
Match: SUGP1 (SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:101172529])

HSP 1 Score: 233.032 bits (593), Expect = 1.996e-68
Identity = 116/205 (56.59%), Postives = 153/205 (74.63%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKAKEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDI-QD-GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L++ QK+Q++ Q+E+Q M++ I   ++A   E+ N          +  + + + EYDSDE++ QD GTWEH+LRK EME TREWA+ L EMG+GKH IGDFLPPEEL++FMETF ALKEGR+P+YS+Y  FK+T EN+GF+ML KMGWKEG+GLG EGQGIK P+  G    +  G GV + ++LT+ DDEYDA+RKRMMLAYRF
Sbjct:  430 LSEDQKRQLKEQQEMQEMYDMIMKHKRAM-AEMQN--------MWEKAIKEHQHEYDSDEEVDQDAGTWEHQLRKMEMEKTREWAESLTEMGKGKHFIGDFLPPEELEKFMETFKALKEGRDPDYSEYKEFKLTVENLGFRMLMKMGWKEGEGLGSEGQGIKAPVNKGITATNGGGFGVDRPAELTKSDDEYDAFRKRMMLAYRF 625

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Medaka
Match: SUGP1 (SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:101172529])

HSP 1 Score: 233.032 bits (593), Expect = 2.093e-68
Identity = 116/205 (56.59%), Postives = 153/205 (74.63%), Query Frame = 3

Query:  864 LTDSQKQQVEYQKELQAMHEFITAQQKAKEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDI-QD-GTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            L++ QK+Q++ Q+E+Q M++ I   ++A   E+ N          +  + + + EYDSDE++ QD GTWEH+LRK EME TREWA+ L EMG+GKH IGDFLPPEEL++FMETF ALKEGR+P+YS+Y  FK+T EN+GF+ML KMGWKEG+GLG EGQGIK P+  G    +  G GV + ++LT+ DDEYDA+RKRMMLAYRF
Sbjct:  433 LSEDQKRQLKEQQEMQEMYDMIMKHKRAM-AEMQN--------MWEKAIKEHQHEYDSDEEVDQDAGTWEHQLRKMEMEKTREWAESLTEMGKGKHFIGDFLPPEELEKFMETFKALKEGRDPDYSEYKEFKLTVENLGFRMLMKMGWKEGEGLGSEGQGIKAPVNKGITATNGGGFGVDRPAELTKSDDEYDAFRKRMMLAYRF 628

[Close]

BLAST of G-patch domain-containing protein vs. Ensembl Medaka
Match: ENSORLT00000001301.2 (RNA-binding protein 5-B [Source:NCBI gene;Acc:101169440])

HSP 1 Score: 54.6842 bits (130), Expect = 1.906e-7
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 3

Query: 1227 NYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMS-KLTEFDDEYDAYRKRMMLAY 1466
            NY   T   +T +N+G KML+ MGW+EG GLG   QGI  P+    ++    G+G    S +L+  D   DA RK M   +
Sbjct:  739 NYEQPTKDGLTSDNIGSKMLQAMGWQEGRGLGRHQQGITTPIA-ASLRAKGTGLGSKGSSYELSPSDTYKDAVRKAMFARF 818

[Close]

BLAST of G-patch domain-containing protein vs. Planmine SMEST
Match: SMESG000074499.1 (SMESG000074499.1)

HSP 1 Score: 906.746 bits (2342), Expect = 0.000e+0
Identity = 468/469 (99.79%), Postives = 469/469 (100.00%), Query Frame = 3

Query:   66 ENKKGKHFNNEFKGKKSGKAYYDYIEECKRKQELIIKQKLEEVQGNLGNRDVKFEPSNNYILAEELQEIECKTLKTEPKVELPFKSDGSFIEQFKKMRDYGDYELENSTEKLKEIQESCKPNGETIACKIEPKISPRKSSKCVEDDTDGIITPEDPKILIAIENLVNQASLLPHDLQVTYIKQFEDQEEYWFLTLADSVEYSYFHWRLEQAKQDYLKKIEQXXXXXXXXXXXXXXXXXXXXXXXXXWNTEIPKMILIPVISQNSQILTDSQKQQVEYQKELQAMHEFITAQQKAKEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 1472
            +NKKGKHFNNEFKGKKSGKAYYDYIEECKRKQELIIKQKLEEVQGNLGNRDVKFEPSNNYILAEELQEIECKTLKTEPKVELPFKSDGSFIEQFKKMRDYGDYELENSTEKLKEIQESCKPNGETIACKIEPKISPRKSSKCVEDDTDGIITPEDPKILIAIENLVNQASLLPHDLQVTYIKQFEDQEEYWFLTLADSVEYSYFHWRLEQAKQDYLKKIEQSKKNSVANNSNSTSNTSSSKKRKSRWNTEIPKMILIPVISQNSQILTDSQKQQVEYQKELQAMHEFITAQQKAKEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF
Sbjct:   13 QNKKGKHFNNEFKGKKSGKAYYDYIEECKRKQELIIKQKLEEVQGNLGNRDVKFEPSNNYILAEELQEIECKTLKTEPKVELPFKSDGSFIEQFKKMRDYGDYELENSTEKLKEIQESCKPNGETIACKIEPKISPRKSSKCVEDDTDGIITPEDPKILIAIENLVNQASLLPHDLQVTYIKQFEDQEEYWFLTLADSVEYSYFHWRLEQAKQDYLKKIEQSKKNSVANNSNSTSNTSSSKKRKSRWNTEIPKMILIPVISQNSQILTDSQKQQVEYQKELQAMHEFITAQQKAKEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQDGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFWALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPLCNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRF 481

The following BLAST results are available for this feature:

BLAST of G-patch domain-containing protein vs. Ensembl Human
BLAST of G-patch domain-containing protein vs. Ensembl Celegans
BLAST of G-patch domain-containing protein vs. Ensembl Fly
BLAST of G-patch domain-containing protein vs. Ensembl Zebrafish
BLAST of G-patch domain-containing protein vs. Ensembl Xenopus
BLAST of G-patch domain-containing protein vs. Ensembl Mouse
BLAST of G-patch domain-containing protein vs. UniProt/SwissProt
BLAST of G-patch domain-containing protein vs. TrEMBL
BLAST of G-patch domain-containing protein vs. Ensembl Cavefish
BLAST of G-patch domain-containing protein vs. Ensembl Sea Lamprey
BLAST of G-patch domain-containing protein vs. Ensembl Yeast
BLAST of G-patch domain-containing protein vs. Ensembl Nematostella
BLAST of G-patch domain-containing protein vs. Ensembl Medaka
BLAST of G-patch domain-containing protein vs. Planmine SMEST

BLAST of G-patch domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SUGP1	1.753e-65	52.91	SURP and G-patch domain containing 1 [Source:HGNC ...	[more]
SUGP2	6.129e-11	38.20	SURP and G-patch domain containing 2 [Source:HGNC ...	[more]
SUGP2	6.598e-11	38.20	SURP and G-patch domain containing 2 [Source:HGNC ...	[more]
SUGP2	6.598e-11	38.20	SURP and G-patch domain containing 2 [Source:HGNC ...	[more]
SUGP2	6.598e-11	38.20	SURP and G-patch domain containing 2 [Source:HGNC ...	[more]

BLAST of G-patch domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of G-patch domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
CG31550	6.919e-57	58.44	gene:FBgn0051550 transcript:FBtr0078684	[more]
CG31550	7.176e-57	58.44	gene:FBgn0051550 transcript:FBtr0336770	[more]
CG4896	1.941e-6	28.57	gene:FBgn0031319 transcript:FBtr0344790	[more]
CG4896	1.942e-6	28.57	gene:FBgn0031319 transcript:FBtr0077968	[more]
CG4887	3.500e-6	30.61	gene:FBgn0031318 transcript:FBtr0077966	[more]

BLAST of G-patch domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
rbm5	7.202e-7	39.51	RNA binding motif protein 5 [Source:ZFIN;Acc:ZDB-G...	[more]

BLAST of G-patch domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
abcd3	9.843e-68	54.85	ATP binding cassette subfamily D member 3 [Source:...	[more]
abcd3	1.369e-67	54.85	ATP binding cassette subfamily D member 3 [Source:...	[more]
abcd3	1.519e-67	54.85	ATP binding cassette subfamily D member 3 [Source:...	[more]
abcd3	1.958e-67	54.85	ATP binding cassette subfamily D member 3 [Source:...	[more]
stox1	1.750e-11	45.88	storkhead box 1 [Source:Xenbase;Acc:XB-GENE-101254...	[more]

BLAST of G-patch domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Sugp1	1.889e-66	53.40	SURP and G patch domain containing 1 [Source:MGI S...	[more]
Sugp2	1.311e-11	40.48	SURP and G patch domain containing 2 [Source:MGI S...	[more]
Sugp2	4.791e-11	38.64	SURP and G patch domain containing 2 [Source:MGI S...	[more]
Sugp2	4.791e-11	38.64	SURP and G patch domain containing 2 [Source:MGI S...	[more]
Sugp2	4.791e-11	38.64	SURP and G patch domain containing 2 [Source:MGI S...	[more]

BLAST of G-patch domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q8CH02\|SUGP1_MOUSE	1.321e-65	53.40	SURP and G-patch domain-containing protein 1 OS=Mu...	[more]
sp\|Q68FU8\|SUGP1_RAT	2.232e-65	53.40	SURP and G-patch domain-containing protein 1 OS=Ra...	[more]
sp\|Q8IWZ8\|SUGP1_HUMAN	8.420e-65	52.91	SURP and G-patch domain-containing protein 1 OS=Ho...	[more]
sp\|Q94C11\|SUGP1_ARATH	1.618e-20	38.46	SURP and G-patch domain-containing protein 1-like ...	[more]
sp\|Q8IX01\|SUGP2_HUMAN	3.169e-10	38.20	SURP and G-patch domain-containing protein 2 OS=Ho...	[more]

BLAST of G-patch domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A504YNV2	2.308e-95	49.86	SURP and G-patch domain-containing protein 1 OS=Fa...	[more]
A0A564YK52	4.955e-93	70.19	G-patch domain-containing protein OS=Hymenolepis d...	[more]
A0A0R3T349	2.039e-91	68.42	G-patch domain-containing protein OS=Rodentolepis ...	[more]
A0A430QHG3	1.286e-90	66.67	Splicing factor 4 OS=Schistosoma bovis OX=6184 GN=...	[more]
A0A183SMG8	2.338e-90	51.35	G-patch domain-containing protein OS=Schistocephal...	[more]

BLAST of G-patch domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
SUGP1	2.063e-69	56.31	SURP and G-patch domain containing 1 [Source:NCBI ...	[more]
SUGP1	9.711e-69	56.31	SURP and G-patch domain containing 1 [Source:NCBI ...	[more]
rbm5	1.426e-6	37.04	RNA-binding protein 5 [Source:NCBI gene;Acc:103023...	[more]
gpatch11	9.815e-6	39.13	G-patch domain containing 11 [Source:NCBI gene;Acc...	[more]

BLAST of G-patch domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 2


Match Name	E-value	Identity	Description
SUGP1	6.155e-73	59.22	SURP and G-patch domain containing 1 [Source:HGNC ...	[more]
ENSPMAT00000002233.1	1.494e-6	35.37	pep scaffold:Pmarinus_7.0:GL477379:17971:46302:-1 ...	[more]

BLAST of G-patch domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of G-patch domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3


Match Name	E-value	Identity	Description
EDO45757	9.339e-44	52.60	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO26629	9.387e-22	50.00	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO48106	1.369e-8	40.74	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of G-patch domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
SUGP1	5.981e-69	56.59	SURP and G-patch domain containing 1 [Source:NCBI ...	[more]
SUGP1	1.996e-68	56.59	SURP and G-patch domain containing 1 [Source:NCBI ...	[more]
SUGP1	2.093e-68	56.59	SURP and G-patch domain containing 1 [Source:NCBI ...	[more]
ENSORLT00000001301.2	1.906e-7	38.27	RNA-binding protein 5-B [Source:NCBI gene;Acc:1011...	[more]

BLAST of G-patch domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1


Match Name	E-value	Identity	Description
SMESG000074499.1	0.000e+0	99.79	SMESG000074499.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30030755 ID=SMED30030755|Name=G-patch domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1624bp
ATATGATAATCGGAAAACTAACCGTAATGTTCTTTATTCTATTATTTTTA
TATAAAATTTGCCTAGAAAACAAGAAAGGCAAGCATTTCAATAATGAATT
TAAAGGGAAGAAATCAGGGAAAGCATATTATGATTATATCGAAGAATGTA
AAAGAAAACAAGAATTAATAATTAAACAAAAATTAGAAGAAGTTCAAGGA
AATTTAGGTAACAGGGATGTTAAATTTGAGCCAAGTAATAATTACATTCT
AGCTGAAGAACTACAAGAAATTGAGTGTAAGACGTTGAAAACTGAACCTA
AAGTTGAGTTGCCTTTCAAAAGTGACGGTAGTTTTATAGAACAATTTAAG
AAAATGCGAGATTACGGTGATTATGAGTTAGAAAATTCAACAGAAAAATT
AAAAGAAATTCAGGAATCCTGCAAACCGAATGGTGAAACGATTGCTTGCA
AAATCGAACCTAAAATATCACCGAGGAAGTCAAGCAAATGTGTTGAAGAT
GATACCGATGGAATAATAACTCCAGAAGATCCAAAAATTTTAATAGCCAT
AGAAAATTTGGTTAATCAAGCTTCTCTGTTGCCTCACGATTTACAGGTGA
CTTATATAAAACAATTTGAAGATCAAGAAGAATATTGGTTTTTGACATTA
GCAGATAGTGTCGAATATAGCTACTTTCATTGGAGATTAGAACAAGCAAA
ACAAGATTATTTAAAGAAAATTGAACAATCAAAAAAAAATTCTGTAGCAA
ATAACTCAAATTCAACATCTAACACTAGTTCCAGTAAAAAGAGGAAATCC
AGGTGGAATACAGAAATACCGAAAATGATTTTAATTCCAGTTATTTCTCA
AAACTCACAAATCCTAACAGATTCTCAAAAACAGCAAGTAGAATATCAAA
AAGAATTACAAGCTATGCATGAATTCATTACGGCGCAACAGAAAGCTAAA
GAACAAGAACTTATGAACAGTATCGCGGGAGTAAAATACGGACAAGCTAA
AACCAAGCTGGGACAGTTCAAATTCGAATATGATTCAGACGAAGACATCC
AGGATGGAACTTGGGAACACAGACTGCGGAAAGAAGAAATGGAAGCTACT
CGAGAATGGGCAGATAAACTCAACGAAATGGGACAAGGGAAACATCATAT
CGGAGATTTTCTACCGCCTGAAGAGTTAGACAGATTTATGGAAACGTTTT
GGGCGTTGAAAGAAGGACGTGAGCCGAATTATTCAGATTATACTACTTTC
AAAATAACATGTGAAAATGTCGGATTTAAAATGCTGAAAAAAATGGGTTG
GAAAGAAGGAGATGGTTTAGGATGTGAGGGTCAGGGCATTAAGGTTCCTC
TGTGCAATGGTCCTGTTAAAAACGATAATATTGGTATTGGAGTCACAAAA
ATGTCAAAATTGACAGAATTCGACGATGAATATGATGCATATAGAAAACG
AATGATGCTAGCATATAGATTCAGACCTAATCCTTTAAACAATCCCCGCC
GTGACTACTATTGATACACAAGTATTTAATGTAGAAAAGTTTATGTGATG
TGTTTTTATTGTAAATTCACAGCGTTCTTTTAATCTGACTTTGAAAATAT
TTTCAAATAAATGTTCAACTTTTC

protein sequence of SMED30030755-orf-1

>SMED30030755-orf-1 ID=SMED30030755-orf-1|Name=SMED30030755-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=504bp
MIIGKLTVMFFILLFLYKICLENKKGKHFNNEFKGKKSGKAYYDYIEECK
RKQELIIKQKLEEVQGNLGNRDVKFEPSNNYILAEELQEIECKTLKTEPK
VELPFKSDGSFIEQFKKMRDYGDYELENSTEKLKEIQESCKPNGETIACK
IEPKISPRKSSKCVEDDTDGIITPEDPKILIAIENLVNQASLLPHDLQVT
YIKQFEDQEEYWFLTLADSVEYSYFHWRLEQAKQDYLKKIEQSKKNSVAN
NSNSTSNTSSSKKRKSRWNTEIPKMILIPVISQNSQILTDSQKQQVEYQK
ELQAMHEFITAQQKAKEQELMNSIAGVKYGQAKTKLGQFKFEYDSDEDIQ
DGTWEHRLRKEEMEATREWADKLNEMGQGKHHIGDFLPPEELDRFMETFW
ALKEGREPNYSDYTTFKITCENVGFKMLKKMGWKEGDGLGCEGQGIKVPL
CNGPVKNDNIGIGVTKMSKLTEFDDEYDAYRKRMMLAYRFRPNPLNNPRR
DYY*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **biological process**
Term	Definition
GO:0006396	RNA processing

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000099	neuron

Vocabulary: **INTERPRO**
Term	Definition
IPR040169	SUGP1/2
IPR000467	G_patch_dom

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 418..465 e-value: 1.1E-12 score: 58.1
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 421..451 e-value: 2.6E-12 score: 46.4
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 420..467 score: 14.733
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..267
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..263
None	No IPR available	PANTHER	PTHR23340:SF0	SURP AND G PATCH DOMAIN-CONTAINING 1	coord: 174..503
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..22 score: 0.699
IPR040169	SURP and G-patch domain-containing protein 1/2	PANTHER	PTHR23340	ARGININE/SERINE RICH SPLICING FACTOR SF4/14	coord: 174..503

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G-patch domain-containing protein

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Owlery

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