CDV3 homolog

Overview
NameCDV3 homolog
Smed IDSMED30030691
Length (bp)1163
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of CDV3 homolog (SMED30030691) t-SNE clustered cells

Violin plots show distribution of expression levels for CDV3 homolog (SMED30030691) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of CDV3 homolog (SMED30030691) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for CDV3 homolog (SMED30030691) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30030691

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30030691h1SMcG0013004 Contig5721GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
muscle cellSMED30030691h1SMcG0013004 dd_Smed_v4_2628_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of CDV3 homolog vs. Ensembl Human
Match: CDV3 (CDV3 homolog [Source:HGNC Symbol;Acc:HGNC:26928])

HSP 1 Score: 54.6842 bits (130), Expect = 4.133e-8
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 3 
Query:  273 TKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN----DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            TK++DEW++    EVD S LR+  M    E    K E++ E   D  DN          ++KS+ PW     ++A   PV+++E  +P      Y PP  R  +    K P+  P I ++++FPSL+  A
Sbjct:   79 TKDEDEWKELEQKEVDYSGLRVQAMQISSE----KEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT--RKTPQGPPEIYSDTQFPSLQSTA 202
[Close]
BLAST of CDV3 homolog vs. Ensembl Human
Match: CDV3 (CDV3 homolog [Source:HGNC Symbol;Acc:HGNC:26928])

HSP 1 Score: 53.9138 bits (128), Expect = 1.284e-7
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 3 
Query:  273 TKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN----DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            TK++DEW++    EVD S LR+  M    E    K E++ E   D  DN          ++KS+ PW     ++A   PV+++E  +P      Y PP  R  +    K P+  P I ++++FPSL+  A
Sbjct:   79 TKDEDEWKELEQKEVDYSGLRVQAMQISSE----KEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT--RKTPQGPPEIYSDTQFPSLQSTA 202
[Close]
BLAST of CDV3 homolog vs. Ensembl Human
Match: CDV3 (CDV3 homolog [Source:HGNC Symbol;Acc:HGNC:26928])

HSP 1 Score: 52.373 bits (124), Expect = 1.969e-7
Identity = 39/129 (30.23%), Postives = 63/129 (48.84%), Query Frame = 3 
Query:  276 KEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN----DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            +++DEW++    EVD S LR+  M    E    K E++ E   D  DN          ++KS+ PW     ++A   PV+++E  +P      Y PP  R  +    K P+  P I ++++FPSL+  A
Sbjct:   34 RDEDEWKELEQKEVDYSGLRVQAMQISSE----KEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT--RKTPQGPPEIYSDTQFPSLQSTA 156
[Close]
BLAST of CDV3 homolog vs. Ensembl Xenopus
Match: cdv3 (CDV3 homolog [Source:NCBI gene;Acc:448377])

HSP 1 Score: 51.9878 bits (123), Expect = 5.284e-7
Identity = 44/140 (31.43%), Postives = 67/140 (47.86%), Query Frame = 3 
Query:  225 EKSHQSQEPKSELLRKTKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDNDNIFKKVDKSAHPWGNKITIKAEVEPVVLS-EPSQPQK-YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            EKS +S+ P      + KEDDEW++    EVD S LRI  +    E+   + E   E  +D  D        DKS+ PW      +A +  V+ + EP      Y PP  R  +    ++P+  P I ++++FPSL+  A
Sbjct:   64 EKSGKSENPDQ---LQEKEDDEWKEFEQKEVDYSGLRIQSLQISNEKDDDEYEKKEEQGADWEDIGGC--GTDKSSGPWNKTAQAQAPISAVIEAPEPVHTGGVYRPPAAR--ASVATRKPQGPPEIFSDTQFPSLQATA 196
[Close]
BLAST of CDV3 homolog vs. UniProt/SwissProt
Match: sp|Q9UKY7|CDV3_HUMAN (Protein CDV3 homolog OS=Homo sapiens OX=9606 GN=CDV3 PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 6.164e-7
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 3 
Query:  273 TKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN----DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            TK++DEW++    EVD S LR+  M    E    K E++ E   D  DN          ++KS+ PW     ++A   PV+++E  +P      Y PP  R  +    K P+  P I ++++FPSL+  A
Sbjct:   79 TKDEDEWKELEQKEVDYSGLRVQAMQISSE----KEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT--RKTPQGPPEIYSDTQFPSLQSTA 202
[Close]
BLAST of CDV3 homolog vs. UniProt/SwissProt
Match: sp|Q5ZLH9|CDV3_CHICK (Protein CDV3 homolog OS=Gallus gallus OX=9031 GN=CDV3 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.016e-6
Identity = 39/129 (30.23%), Postives = 67/129 (51.94%), Query Frame = 3 
Query:  270 KTKEDDEW-EDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN-DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            K+KE+D+W E     E+D S LR+  M     ++  K ++ +E   + SDN +     VD+S+ PW       A V   +++EP +P +    Y PP  R+  + P +  +  P I ++++FPSL+  A
Sbjct:   74 KSKEEDDWKEFEQKEEIDYSGLRVQSM-----QISEKEDDESEKREEPSDNWEETSGAVDRSSGPWNKSAPAPAPVVETIVTEPPEPVQTGGVYRPPGAREGGR-PRRAQQGPPEIYSDTQFPSLQSTA 196
[Close]
BLAST of CDV3 homolog vs. UniProt/SwissProt
Match: sp|Q6DIS2|CDV3_XENTR (Protein CDV3 homolog OS=Xenopus tropicalis OX=8364 GN=cdv3 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.799e-6
Identity = 44/140 (31.43%), Postives = 67/140 (47.86%), Query Frame = 3 
Query:  225 EKSHQSQEPKSELLRKTKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDNDNIFKKVDKSAHPWGNKITIKAEVEPVVLS-EPSQPQK-YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            EKS +S+ P      + KEDDEW++    EVD S LRI  +    E+   + E   E  +D  D        DKS+ PW      +A +  V+ + EP      Y PP  R  +    ++P+  P I ++++FPSL+  A
Sbjct:   64 EKSGKSENPDQ---LQEKEDDEWKEFEQKEVDYSGLRIQSLQISNEKDDDEYEKKEEQGADWEDIGGC--GTDKSSGPWNKTAQAQAPISAVIEAPEPVHTGGVYRPPAAR--ASVATRKPQGPPEIFSDTQFPSLQATA 196
[Close]
BLAST of CDV3 homolog vs. TrEMBL
Match: A0A096NDE8 (CDV3 homolog OS=Papio anubis OX=9555 GN=CDV3 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.444e-6
Identity = 41/130 (31.54%), Postives = 66/130 (50.77%), Query Frame = 3 
Query:  273 TKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN----DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            TK++DEW++    EVD S LR+  M     ++  K E++TE   D  DN          ++KS+ PW     ++A   PV+++E  +P      Y PP  R  +    K P+  P I ++++FPSL+  A
Sbjct:   79 TKDEDEWKELEQKEVDYSGLRVQAM-----QISEKEEDDTEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTALVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT--RKTPQGPPEIYSDTQFPSLQSTA 201
[Close]
BLAST of CDV3 homolog vs. TrEMBL
Match: A0A2I3M821 (CDV3 homolog OS=Papio anubis OX=9555 GN=CDV3 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.609e-6
Identity = 41/130 (31.54%), Postives = 66/130 (50.77%), Query Frame = 3 
Query:  273 TKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN----DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            TK++DEW++    EVD S LR+  M     ++  K E++TE   D  DN          ++KS+ PW     ++A   PV+++E  +P      Y PP  R  +    K P+  P I ++++FPSL+  A
Sbjct:   79 TKDEDEWKELEQKEVDYSGLRVQAM-----QISEKEEDDTEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTALVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTT--RKTPQGPPEIYSDTQFPSLQSTA 201
[Close]
BLAST of CDV3 homolog vs. TrEMBL
Match: A0A452GBL9 (CDV3 homolog OS=Capra hircus OX=9925 GN=CDV3 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.070e-6
Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 3 
Query:  273 TKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN----DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            TKE+DEW++    EVD S LR+  M     ++  K E+  E   D SDN          V+KS+ PW     ++A   PVV++E  +P      Y PP  R  +    K P+  P I ++++FPSL+  A
Sbjct:   79 TKEEDEWKEFEQKEVDYSGLRVQAM-----QISEKEEDEVEKREDPSDNWEEGGGGGGGVEKSSGPWNKTAPVQAPPAPVVVTETPEPTMTSGVYRPPGARLTTT--RKAPQGPPEIYSDTQFPSLQSTA 201
[Close]
BLAST of CDV3 homolog vs. TrEMBL
Match: A0A4W2DZ67 (CDV3 homolog OS=Bos indicus x Bos taurus OX=30522 GN=CDV3 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.070e-6
Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 3 
Query:  273 TKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN----DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            TKE+DEW++    EVD S LR+  M     ++  K E+  E   D SDN          V+KS+ PW     ++A   PVV++E  +P      Y PP  R  +    K P+  P I ++++FPSL+  A
Sbjct:   79 TKEEDEWKEFEQKEVDYSGLRVQAM-----QISEKEEDEVEKREDPSDNWEEGGGGGGGVEKSSGPWNKTAPVQAPPAPVVVTETPEPTMTSGVYRPPGARLTTT--RKAPQGPPEIYSDTQFPSLQSTA 201
[Close]
BLAST of CDV3 homolog vs. TrEMBL
Match: A0A2F0B776 (Protein CDV3 (Fragment) OS=Eschrichtius robustus OX=9764 GN=ESR_42358 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.103e-6
Identity = 42/130 (32.31%), Postives = 66/130 (50.77%), Query Frame = 3 
Query:  273 TKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDN----DNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQK----YVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVA 638
            TK++DEW++    EVD S+LR+  M     ++  K E+  E   D  DN          V+KS+ PW    +++A   PVV++E  +P      Y PP  R  +    K P+  P I ++++FPSL+  A
Sbjct:   35 TKDEDEWKEFEQKEVDHSSLRVQAM-----QISEKEEDENEKREDPGDNWEEGGGGGGGVEKSSGPWNKTASVQAPPAPVVVTETPEPTMTSGVYRPPGARLTTT--RKAPQGPPEIYSDTQFPSLQSTA 157
[Close]
BLAST of CDV3 homolog vs. Planmine SMEST
Match: SMESG000008267.1 (SMESG000008267.1)

HSP 1 Score: 532.332 bits (1370), Expect = 0.000e+0
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 3 
Query:   75 MQIKMEANDLESFFLXXXXXXXXXXANIINPALLIEQTREAEIKKAKKVNEKSHQSQEPKSELLRKTKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDNDNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQKYVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVAINDTEDGTWCRVIKNGHTQPSEPVTKKYIPPAKKELVQTDSQPTIEKAKTEKIGPSKYVPPHLRNKQSTNPSENRFASLKDESMN 893
            MQIKMEANDLESFFLSKDKKKKSKKANIINPALLIEQTREAEIKKAKKVNEKSHQSQEPKSELLRKTKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDNDNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQKYVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVAINDTEDGTWCRVIKNGHTQPSEPVTKKYIPPAKKELVQTDSQPTIEKAKTEKIGPSKYVPPHLRNKQSTNPSENRFASLKDESMN
Sbjct:    1 MQIKMEANDLESFFLSKDKKKKSKKANIINPALLIEQTREAEIKKAKKVNEKSHQSQEPKSELLRKTKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDNDNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQKYVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVAINDTEDGTWCRVIKNGHTQPSEPVTKKYIPPAKKELVQTDSQPTIEKAKTEKIGPSKYVPPHLRNKQSTNPSENRFASLKDESMN 273
[Close]
BLAST of CDV3 homolog vs. Planmine SMEST
Match: SMESG000008267.1 (SMESG000008267.1)

HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 3 
Query:   87 MEANDLESFFLXXXXXXXXXXANIINPALLIEQTREAEIKKAKKVNEKSHQSQEPKSELLRKTKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDNDNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQKYVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVAINDTEDGTWCRVIKNGHTQPSEPVTKKYIPPAKKELVQTDSQPTIEKAKTEKIGPSKYVPPHLRNKQSTNPSENRFASLKDESMN 893
            MEANDLESFFLSKDKKKKSKKANIINPALLIEQTREAEIKKAKKVNEKSHQSQEPKSELLRKTKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDNDNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQKYVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVAINDTEDGTWCRVIKNGHTQPSEPVTKKYIPPAKKELVQTDSQPTIEKAKTEKIGPSKYVPPHLRNKQSTNPSENRFASLKDESMN
Sbjct:    1 MEANDLESFFLSKDKKKKSKKANIINPALLIEQTREAEIKKAKKVNEKSHQSQEPKSELLRKTKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKPKIENNTECASDESDNDNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQPQKYVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVAINDTEDGTWCRVIKNGHTQPSEPVTKKYIPPAKKELVQTDSQPTIEKAKTEKIGPSKYVPPHLRNKQSTNPSENRFASLKDESMN 269
The following BLAST results are available for this feature:
BLAST of CDV3 homolog vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
CDV34.133e-831.54CDV3 homolog [Source:HGNC Symbol;Acc:HGNC:26928][more]
CDV31.284e-731.54CDV3 homolog [Source:HGNC Symbol;Acc:HGNC:26928][more]
CDV31.969e-730.23CDV3 homolog [Source:HGNC Symbol;Acc:HGNC:26928][more]
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BLAST of CDV3 homolog vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CDV3 homolog vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CDV3 homolog vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CDV3 homolog vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
cdv35.284e-731.43CDV3 homolog [Source:NCBI gene;Acc:448377][more]
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BLAST of CDV3 homolog vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CDV3 homolog vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3
Match NameE-valueIdentityDescription
sp|Q9UKY7|CDV3_HUMAN6.164e-731.54Protein CDV3 homolog OS=Homo sapiens OX=9606 GN=CD... [more]
sp|Q5ZLH9|CDV3_CHICK1.016e-630.23Protein CDV3 homolog OS=Gallus gallus OX=9031 GN=C... [more]
sp|Q6DIS2|CDV3_XENTR2.799e-631.43Protein CDV3 homolog OS=Xenopus tropicalis OX=8364... [more]
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BLAST of CDV3 homolog vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A096NDE81.444e-631.54CDV3 homolog OS=Papio anubis OX=9555 GN=CDV3 PE=4 ... [more]
A0A2I3M8211.609e-631.54CDV3 homolog OS=Papio anubis OX=9555 GN=CDV3 PE=4 ... [more]
A0A452GBL92.070e-633.85CDV3 homolog OS=Capra hircus OX=9925 GN=CDV3 PE=4 ... [more]
A0A4W2DZ672.070e-633.85CDV3 homolog OS=Bos indicus x Bos taurus OX=30522 ... [more]
A0A2F0B7762.103e-632.31Protein CDV3 (Fragment) OS=Eschrichtius robustus O... [more]
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BLAST of CDV3 homolog vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CDV3 homolog vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CDV3 homolog vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CDV3 homolog vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CDV3 homolog vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of CDV3 homolog vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000008267.10.000e+0100.00SMESG000008267.1[more]
SMESG000008267.10.000e+0100.00SMESG000008267.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30030691 ID=SMED30030691|Name=CDV3 homolog|organism=Schmidtea mediterranea sexual|type=transcript|length=1163bp
GTTCGTTTAAATAAATTGCTTATATAACGTAAATAAAATATTTAAATTTT
TTGTTCCTTAACTGTCACATTTTTATGCAAATTAAAATGGAAGCTAATGA
TTTAGAATCGTTTTTCTTAAGTAAAGACAAAAAAAAGAAATCTAAAAAAG
CAAATATTATAAATCCAGCATTACTTATTGAGCAAACTCGTGAAGCTGAA
ATAAAAAAGGCGAAAAAAGTAAATGAGAAAAGTCACCAATCTCAAGAACC
GAAAAGTGAATTATTAAGAAAGACGAAAGAAGATGATGAATGGGAAGATA
CTGCAGATGTTGAAGTGGATATGTCAAATTTACGAATTGGAATGATGCCA
CAAAAAGTTGAAGAAGTAAAACCTAAAATAGAAAATAATACTGAATGTGC
ATCTGATGAATCAGACAATGACAATATTTTTAAAAAGGTTGATAAATCAG
CTCATCCATGGGGTAATAAAATAACGATTAAAGCAGAAGTGGAACCTGTT
GTACTATCAGAACCGTCTCAGCCTCAGAAATATGTACCCCCAAATATGCG
TGACATTAGCAAAGCACCAATGAAGCAACCAAAAAAAGCTCCGAATATTA
CTAATAATTCAGAATTTCCATCTCTCAGAGAAGTAGCGATAAATGATACT
GAAGACGGAACTTGGTGTCGTGTCATTAAAAATGGTCACACTCAACCATC
TGAACCGGTCACTAAAAAATACATTCCACCTGCGAAAAAAGAACTAGTTC
AAACTGATTCTCAACCCACGATTGAGAAAGCAAAAACAGAGAAGATAGGA
CCCAGTAAATATGTACCACCTCACTTGAGAAATAAACAATCAACAAATCC
CTCCGAAAATAGATTTGCTAGTTTGAAAGATGAATCAATGAATTAATTCA
AAATAATATTGAAGTTATAACACCGGAAAATAATATTGAAATTACTATCT
ATTCTGGTTGTTTGTTTGGGAAAATGGTTGAATAGAATTGTCATTTTTTG
TATATTCTTTCTGGTGCATGCTATTTAATTTTTCTAATCTATTTTTTTGA
CATTTCTGATGTATTTTAGTTGGAATATTTTTGAGGAAATTTATTTAATT
TAGGTTTGGATAAATGACACATTTTGTTGATTTTGAAAGTCATCGTAGTT
TTTTTCAAATAGC
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protein sequence of SMED30030691-orf-1

>SMED30030691-orf-1 ID=SMED30030691-orf-1|Name=SMED30030691-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=274bp
MQIKMEANDLESFFLSKDKKKKSKKANIINPALLIEQTREAEIKKAKKVN
EKSHQSQEPKSELLRKTKEDDEWEDTADVEVDMSNLRIGMMPQKVEEVKP
KIENNTECASDESDNDNIFKKVDKSAHPWGNKITIKAEVEPVVLSEPSQP
QKYVPPNMRDISKAPMKQPKKAPNITNNSEFPSLREVAINDTEDGTWCRV
IKNGHTQPSEPVTKKYIPPAKKELVQTDSQPTIEKAKTEKIGPSKYVPPH
LRNKQSTNPSENRFASLKDESMN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000070intestinal phagocyte
Vocabulary: INTERPRO
TermDefinition
IPR026806CDV3
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026806Protein CDV3PFAMPF15359CDV3coord: 69..186
e-value: 3.4E-13
score: 50.2
IPR026806Protein CDV3PANTHERPTHR16284FAMILY NOT NAMEDcoord: 5..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..273
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..273