SMED30030668
Overview
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppEmbryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30030668 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 2
Alignments
SMED30030668 aligns in the following genomic locations:
Homology
BLAST of SMED30030668 vs. Ensembl Celegans
Match: mrck-1 (Serine/threonine-protein kinase mrck-1 [Source:UniProtKB/Swiss-Prot;Acc:O01583]) HSP 1 Score: 50.447 bits (119), Expect = 3.191e-6 Identity = 37/120 (30.83%), Postives = 57/120 (47.50%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILME--MLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 ++A F +AE ++AIDSLH HR + P +V D++GH++L D L RIL + + N + PD Y+ PE+ + E Y +C D + +GI E L Sbjct: 182 SMAKFYIAEMVLAIDSLHRLGYVHRDVKPDNVLLDMQGHIRLADFGSCL---RILADGSVASNVAVGTPD-----------YISPEILRAM---EDGRGRYGKEC--DWWSLGICMYEML 282
BLAST of SMED30030668 vs. Ensembl Celegans
Match: mrck-1 (Serine/threonine-protein kinase mrck-1 [Source:UniProtKB/Swiss-Prot;Acc:O01583]) HSP 1 Score: 50.447 bits (119), Expect = 3.191e-6 Identity = 37/120 (30.83%), Postives = 57/120 (47.50%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILME--MLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 ++A F +AE ++AIDSLH HR + P +V D++GH++L D L RIL + + N + PD Y+ PE+ + E Y +C D + +GI E L Sbjct: 182 SMAKFYIAEMVLAIDSLHRLGYVHRDVKPDNVLLDMQGHIRLADFGSCL---RILADGSVASNVAVGTPD-----------YISPEILRAM---EDGRGRYGKEC--DWWSLGICMYEML 282
BLAST of SMED30030668 vs. Ensembl Celegans
Match: mrck-1 (Serine/threonine-protein kinase mrck-1 [Source:UniProtKB/Swiss-Prot;Acc:O01583]) HSP 1 Score: 50.447 bits (119), Expect = 3.218e-6 Identity = 37/120 (30.83%), Postives = 57/120 (47.50%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILME--MLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 ++A F +AE ++AIDSLH HR + P +V D++GH++L D L RIL + + N + PD Y+ PE+ + E Y +C D + +GI E L Sbjct: 182 SMAKFYIAEMVLAIDSLHRLGYVHRDVKPDNVLLDMQGHIRLADFGSCL---RILADGSVASNVAVGTPD-----------YISPEILRAM---EDGRGRYGKEC--DWWSLGICMYEML 282
BLAST of SMED30030668 vs. Ensembl Celegans
Match: mrck-1 (Serine/threonine-protein kinase mrck-1 [Source:UniProtKB/Swiss-Prot;Acc:O01583]) HSP 1 Score: 50.447 bits (119), Expect = 3.218e-6 Identity = 37/120 (30.83%), Postives = 57/120 (47.50%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILME--MLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 ++A F +AE ++AIDSLH HR + P +V D++GH++L D L RIL + + N + PD Y+ PE+ + E Y +C D + +GI E L Sbjct: 182 SMAKFYIAEMVLAIDSLHRLGYVHRDVKPDNVLLDMQGHIRLADFGSCL---RILADGSVASNVAVGTPD-----------YISPEILRAM---EDGRGRYGKEC--DWWSLGICMYEML 282
BLAST of SMED30030668 vs. Ensembl Fly
Match: sti (gene:FBgn0002466 transcript:FBtr0075970) HSP 1 Score: 51.6026 bits (122), Expect = 1.767e-6 Identity = 34/116 (29.31%), Postives = 56/116 (48.28%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIE 977 +LA F LAE VA+ +LHE HR + P+++ D GH+KL D + DR + +P + PD Y+ PE+ + + ++ + + C D + +GII E Sbjct: 207 DLARFYLAELTVALHTLHEMGYVHRDIKPENILIDRFGHIKLADFGNAAALDRDGHVLSLSP-VGTPD-----------YIAPELLQTISTYKLSKSMHDVSC--DYWSMGIIGYE 308
BLAST of SMED30030668 vs. Ensembl Fly
Match: trc (gene:FBgn0003744 transcript:FBtr0074922) HSP 1 Score: 49.2914 bits (116), Expect = 6.522e-6 Identity = 30/110 (27.27%), Postives = 56/110 (50.91%), Query Frame = 3 Query: 432 KMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGD 761 +++H+ L++ + W+V + PV NL++ + ++ L+ ++KD + E F ++E +AIDS+H+ HR + P ++ D RGHLKL D Sbjct: 134 QVAHVRAERDVLVEADHQWVVKMYYSFQDPV-NLYLIMEFLPGGDMMTLL----MKKDTLSEEG----TQFYISETALAIDSIHKLGFIHRDIKPDNLLLDARGHLKLSD 234
BLAST of SMED30030668 vs. Ensembl Fly
Match: trc (gene:FBgn0003744 transcript:FBtr0332154) HSP 1 Score: 48.9062 bits (115), Expect = 7.876e-6 Identity = 30/110 (27.27%), Postives = 56/110 (50.91%), Query Frame = 3 Query: 432 KMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGD 761 +++H+ L++ + W+V + PV NL++ + ++ L+ ++KD + E F ++E +AIDS+H+ HR + P ++ D RGHLKL D Sbjct: 134 QVAHVRAERDVLVEADHQWVVKMYYSFQDPV-NLYLIMEFLPGGDMMTLL----MKKDTLSEEG----TQFYISETALAIDSIHKLGFIHRDIKPDNLLLDARGHLKLSD 234
BLAST of SMED30030668 vs. Ensembl Zebrafish
Match: stk38l (serine/threonine kinase 38 like [Source:ZFIN;Acc:ZDB-GENE-040426-798]) HSP 1 Score: 49.6766 bits (117), Expect = 7.004e-6 Identity = 53/222 (23.87%), Postives = 100/222 (45.05%), Query Frame = 3 Query: 387 SGSI-AVEIVRNVS---AAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADR-----ILMEMLENP-------NLRQPDELELSRKLNQNYLDPEVYHYLVNKEYI--EAYYQL--DCLSDIFCIGIITIETLSNY 992 +G I A++I+R +++H+ L++ + +W+V + + NL++ + ++ L+ ++KD + E+ F +AE ++AIDS+H+ HR + P ++ D RGH+KL D G + + NP N+ + E +K N+ L Y + +YI E + Q + L D + +G+I E L Y Sbjct: 112 TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMF-YSFQDKRNLYLIMEFLPGGDMMTLL----MKKDTLSEEA----TQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSRGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKK-NRRQL---AYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY 320
BLAST of SMED30030668 vs. Ensembl Zebrafish
Match: stk38l (serine/threonine kinase 38 like [Source:ZFIN;Acc:ZDB-GENE-040426-798]) HSP 1 Score: 49.6766 bits (117), Expect = 7.004e-6 Identity = 53/222 (23.87%), Postives = 100/222 (45.05%), Query Frame = 3 Query: 387 SGSI-AVEIVRNVS---AAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADR-----ILMEMLENP-------NLRQPDELELSRKLNQNYLDPEVYHYLVNKEYI--EAYYQL--DCLSDIFCIGIITIETLSNY 992 +G I A++I+R +++H+ L++ + +W+V + + NL++ + ++ L+ ++KD + E+ F +AE ++AIDS+H+ HR + P ++ D RGH+KL D G + + NP N+ + E +K N+ L Y + +YI E + Q + L D + +G+I E L Y Sbjct: 112 TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMF-YSFQDKRNLYLIMEFLPGGDMMTLL----MKKDTLSEEA----TQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSRGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKK-NRRQL---AYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY 320
BLAST of SMED30030668 vs. Ensembl Zebrafish
Match: stk38l (serine/threonine kinase 38 like [Source:ZFIN;Acc:ZDB-GENE-040426-798]) HSP 1 Score: 49.2914 bits (116), Expect = 7.520e-6 Identity = 53/222 (23.87%), Postives = 100/222 (45.05%), Query Frame = 3 Query: 387 SGSI-AVEIVRNVS---AAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADR-----ILMEMLENP-------NLRQPDELELSRKLNQNYLDPEVYHYLVNKEYI--EAYYQL--DCLSDIFCIGIITIETLSNY 992 +G I A++I+R +++H+ L++ + +W+V + + NL++ + ++ L+ ++KD + E+ F +AE ++AIDS+H+ HR + P ++ D RGH+KL D G + + NP N+ + E +K N+ L Y + +YI E + Q + L D + +G+I E L Y Sbjct: 112 TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMF-YSFQDKRNLYLIMEFLPGGDMMTLL----MKKDTLSEEA----TQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSRGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKK-NRRQL---AYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY 320
BLAST of SMED30030668 vs. Ensembl Xenopus
Match: pus1 (pseudouridylate synthase 1 [Source:Xenbase;Acc:XB-GENE-963672]) HSP 1 Score: 50.0618 bits (118), Expect = 8.937e-6 Identity = 32/119 (26.89%), Postives = 59/119 (49.58%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLRQPDELELSRKLNQ-NYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 ++A F LAE ++AIDS+H+ + HR + P +V D++GH++L D L ++ +E S + +Y+ PE+ + E + Y ++C D + +G+ E L Sbjct: 176 DMARFYLAEMVLAIDSIHQLNYVHRDIKPDNVLIDLKGHIRLADFGSCL-------------KMKPDGTVESSVAVGTPDYISPEILQAM---EDGKGKYGIEC--DWWSLGVSMYELL 276
BLAST of SMED30030668 vs. Ensembl Xenopus
Match: pus1 (pseudouridylate synthase 1 [Source:Xenbase;Acc:XB-GENE-963672]) HSP 1 Score: 50.0618 bits (118), Expect = 9.452e-6 Identity = 32/119 (26.89%), Postives = 59/119 (49.58%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLRQPDELELSRKLNQ-NYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 ++A F LAE ++AIDS+H+ + HR + P +V D++GH++L D L ++ +E S + +Y+ PE+ + E + Y ++C D + +G+ E L Sbjct: 176 DMARFYLAEMVLAIDSIHQLNYVHRDIKPDNVLIDLKGHIRLADFGSCL-------------KMKPDGTVESSVAVGTPDYISPEILQAM---EDGKGKYGIEC--DWWSLGVSMYELL 276
BLAST of SMED30030668 vs. Ensembl Xenopus
Match: pus1 (pseudouridylate synthase 1 [Source:Xenbase;Acc:XB-GENE-963672]) HSP 1 Score: 50.0618 bits (118), Expect = 9.620e-6 Identity = 32/119 (26.89%), Postives = 59/119 (49.58%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLRQPDELELSRKLNQ-NYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 ++A F LAE ++AIDS+H+ + HR + P +V D++GH++L D L ++ +E S + +Y+ PE+ + E + Y ++C D + +G+ E L Sbjct: 176 DMARFYLAEMVLAIDSIHQLNYVHRDIKPDNVLIDLKGHIRLADFGSCL-------------KMKPDGTVESSVAVGTPDYISPEILQAM---EDGKGKYGIEC--DWWSLGVSMYELL 276
BLAST of SMED30030668 vs. Ensembl Xenopus
Match: pus1 (pseudouridylate synthase 1 [Source:Xenbase;Acc:XB-GENE-963672]) HSP 1 Score: 50.0618 bits (118), Expect = 9.838e-6 Identity = 32/119 (26.89%), Postives = 59/119 (49.58%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLRQPDELELSRKLNQ-NYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 ++A F LAE ++AIDS+H+ + HR + P +V D++GH++L D L ++ +E S + +Y+ PE+ + E + Y ++C D + +G+ E L Sbjct: 176 DMARFYLAEMVLAIDSIHQLNYVHRDIKPDNVLIDLKGHIRLADFGSCL-------------KMKPDGTVESSVAVGTPDYISPEILQAM---EDGKGKYGIEC--DWWSLGVSMYELL 276
BLAST of SMED30030668 vs. TrEMBL
Match: A0A1V8SSJ7 (Uncharacterized protein OS=Rachicladosporium antarcticum OX=1507870 GN=B0A48_11707 PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 3.382e-6 Identity = 88/347 (25.36%), Postives = 137/347 (39.48%), Query Frame = 3 Query: 432 KMSHLIKNCKALLDIECSWLVNLI------GCVYLPVENL----FMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLG--------ADRILMEML------ENP-NLRQPDE-------LELSRKLNQ-------------NYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETLSNYNFVSFQTRSDEAGPPLLYSCADSFYLKPETQENLER--------ELTKHCGFISEGFYSLILLMLQPKRDRMRGLRMNVQRHRYSRKSGCEYKLRLELLERHPAFDNLELDSIVF 1313 ++ H++ L + WLV L+ +YL +E + F TL+ N + +H R A F ++E + +D+LH+ HR L P++ D GH+KL D + G + RI +E + NP NL QP E E R L + +Y+ PEV L +EY D D + +G + E L+ Y PP + D ET +NL+R E F+S + LI ++ K +R++G++ VQ H Y R+ E +LR E P D+ E D+ F Sbjct: 314 EVRHVLTERDILTTAKSDWLVRLLYSFQDDSSIYLAMEYVPGGDFRTLLNNTGV--------LHNRH-----------ARFYISEMFLCVDALHQLGYIHRDLKPENFLIDGTGHVKLTDFGLAAGFLAPAKIESMRIKLESVGNMPSSANPFNLNQPTESRSIRERREGYRSLRERDKNYAKSIVGSPDYMAPEV---LKGEEY-------DSTVDYWSLGCMLFEALAGY-------------PPFAGASVD------ETWQNLKRWQSVLRKPEYEDPSYFLSRRTWDLITRLIAVKANRLQGMKQ-VQMHDYFREVSWE-RLRSERAPFVPELDS-ETDAGYF 609
BLAST of SMED30030668 vs. Ensembl Cavefish
Match: stk38l (serine/threonine kinase 38 like [Source:ZFIN;Acc:ZDB-GENE-040426-798]) HSP 1 Score: 48.9062 bits (115), Expect = 8.403e-6 Identity = 53/222 (23.87%), Postives = 100/222 (45.05%), Query Frame = 3 Query: 387 SGSI-AVEIVRNVS---AAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADR-----ILMEMLENP-------NLRQPDELELSRKLNQNYLDPEVYHYLVNKEYI--EAYYQL--DCLSDIFCIGIITIETLSNY 992 +G I A++I+R +++H+ L++ + +W+V + + NL++ + ++ L+ ++KD + E+ F +AE ++AIDS+H+ HR + P ++ D RGH+KL D G + + NP N+ + E +K N+ L Y + +YI E + Q + L D + +G+I E L Y Sbjct: 107 TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMF-YSFQDKRNLYLIMEFLPGGDMMTLL----MKKDTLSEEA----TQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSRGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKK-NRRQL---AYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY 315
BLAST of SMED30030668 vs. Ensembl Sea Lamprey
Match: stk38l (serine/threonine kinase 38 like [Source:ZFIN;Acc:ZDB-GENE-040426-798]) HSP 1 Score: 48.9062 bits (115), Expect = 1.753e-6 Identity = 48/222 (21.62%), Postives = 95/222 (42.79%), Query Frame = 3 Query: 387 SGSI-AVEIVRNVS---AAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRI-LMEMLENPNLRQPDELELSRKLNQNYLDPEVYH---------------YLVNKEYIEAYYQLDCLSDIFCIGIITIETLSNY 992 +G I A++++R +++H+ L++ + W+V + P +NL++ + ++ L+ ++KD + E F +AE ++AIDS+H+ HR + P ++ D +GH+KL D G + E + QP + S K + E + Y+ + +++ Y C D + +G+I E L Y Sbjct: 9 TGHIYAMKVLRKADMLEKEQVAHIRAERDILVEADNLWVVKMFYSFQDP-KNLYLIMEFLPGGDMMTLL----MKKDTLTEEE----TQFYIAESILAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRDLTQAQPSDFSTSSKPMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFLQTGYNKLC--DWWSLGVIMFEMLIGY 219
BLAST of SMED30030668 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005559.1 (pep scaffold:Pmarinus_7.0:GL476474:6865:57025:1 gene:ENSPMAG00000004999.1 transcript:ENSPMAT00000005559.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 48.9062 bits (115), Expect = 3.268e-6 Identity = 35/118 (29.66%), Postives = 54/118 (45.76%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFES--LGADRILMEMLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIE 977 ++ F LAE ++A SLH+ HR L P++V D GH+KL D + L A++++ L + PD Y+ PEV K Y +C D + +G+I E Sbjct: 195 SMVRFYLAELVLATQSLHQMGYVHRDLKPENVLVDRTGHIKLADFGSAAKLNANKMVSSKLPEGS---PD-----------YIAPEVLSSFSGK----GSYGPEC--DWWSVGVIAYE 292
BLAST of SMED30030668 vs. Ensembl Yeast
Match: DBF20 (Ser/Thr kinase involved in late nuclear division; one of the mitotic exit network (MEN) proteins; necessary for the execution of cytokinesis; also plays a role in regulating the stability of SWI5 and CLB2 mRNAs; DBF20 has a paralog, DBF2, that arose from the whole genome duplication [Source:SGD;Acc:S000006315]) HSP 1 Score: 48.1358 bits (113), Expect = 2.714e-6 Identity = 35/132 (26.52%), Postives = 60/132 (45.45%), Query Frame = 3 Query: 432 KMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESI-CNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLR 824 + +H++ L WLV L+ P E+L++ + + R LI++ + A F ++E A+++LHE THR L P++ D GH+KL D L A + E +E+ +R Sbjct: 210 ETNHVLTERDILTTTRSDWLVKLLYAFQDP-ESLYLAME---------FVPGGDFRTLLINTRILKSGHARFYISEMFCAVNALHELGYTHRDLKPENFLIDATGHIKLTDF--GLAAGTVSNERIESMKIR 329
BLAST of SMED30030668 vs. Ensembl Yeast
Match: DBF2 (Ser/Thr kinase involved in transcription and stress response; functions as part of a network of genes in exit from mitosis; localization is cell cycle regulated; activated by Cdc15p during the exit from mitosis; also plays a role in regulating the stability of SWI5 and CLB2 mRNAs; phosphorylates Chs2p to regulate primary septum formation and Hof1p to regulate cytokinesis; DBF2 has a paralog, DBF20, that arose from the whole genome duplication [Source:SGD;Acc:S000003324]) HSP 1 Score: 46.595 bits (109), Expect = 7.262e-6 Identity = 33/129 (25.58%), Postives = 60/129 (46.51%), Query Frame = 3 Query: 441 HLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESI-CNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLR 824 H++ L WLV L+ + +++L++ + + R LI++ + A F ++E A+++LH+ THR L P++ D +GH+KL D L A I E +E+ +R Sbjct: 221 HVLTERDILTTTRSEWLVKLL-YAFQDLQSLYLAME---------FVPGGDFRTLLINTRCLKSGHARFYISEMFCAVNALHDLGYTHRDLKPENFLIDAKGHIKLTDF--GLAAGTISNERIESMKIR 337
BLAST of SMED30030668 vs. Ensembl Nematostella
Match: EDO32008 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SW88]) HSP 1 Score: 50.0618 bits (118), Expect = 9.137e-7 Identity = 34/117 (29.06%), Postives = 53/117 (45.30%), Query Frame = 3 Query: 633 LALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 A F AE ++A+D++H HR + P ++ D GHLKL D + DR M + + + PD Y+ PEV + + E YY +C D + +G+ E L Sbjct: 165 WAKFYCAEVVLALDAIHTMGFVHRDVKPDNMLLDGEGHLKLADFGTCMRMDRDGM-VRSDTAVGTPD-----------YISPEV----LKSQGGEGYYGREC--DWWSVGVFLYEML 263
BLAST of SMED30030668 vs. Ensembl Nematostella
Match: EDO37677 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SF23]) HSP 1 Score: 50.0618 bits (118), Expect = 1.306e-6 Identity = 36/120 (30.00%), Postives = 57/120 (47.50%), Query Frame = 3 Query: 630 NLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFES--LGADRILMEMLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETL 983 ++A F LAE ++AI SLH HR + P +V D GH+KL D S L AD+ + + + P+ Y+ PEV L + + Y ++C D + +G++ E L Sbjct: 181 DMARFYLAEIVMAIHSLHTMGFVHRDVKPDNVLIDRTGHIKLADFGSSARLSADKKVFSKMP---VGTPE-----------YIAPEV---LTSMDGSGGAYGVEC--DWWSLGVVAYEML 281
BLAST of SMED30030668 vs. Ensembl Medaka
Match: stk38l (serine/threonine kinase 38 like [Source:NCBI gene;Acc:101163624]) HSP 1 Score: 49.6766 bits (117), Expect = 5.848e-6 Identity = 53/222 (23.87%), Postives = 100/222 (45.05%), Query Frame = 3 Query: 387 SGSI-AVEIVRNVS---AAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADR-----ILMEMLENP-------NLRQPDELELSRKLNQNYLDPEVYHYLVNKEYI--EAYYQL--DCLSDIFCIGIITIETLSNY 992 +G I A++I+R +++H+ L++ + +W+V + + NL++ + ++ L+ ++KD + E+ F +AE ++AIDS+H+ HR + P ++ D RGH+KL D G + + NP N+ + E +K N+ L Y + +YI E + Q + L D + +G+I E L Y Sbjct: 112 TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADSAWVVKMF-YSFQDKRNLYLIMEFLPGGDMMTLL----MKKDTLSEEA----TQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSRGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKK-NRRQL---AYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY 320
BLAST of SMED30030668 vs. Ensembl Medaka
Match: stk38l (serine/threonine kinase 38 like [Source:NCBI gene;Acc:101163624]) HSP 1 Score: 48.9062 bits (115), Expect = 8.639e-6 Identity = 53/222 (23.87%), Postives = 100/222 (45.05%), Query Frame = 3 Query: 387 SGSI-AVEIVRNVS---AAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADR-----ILMEMLENP-------NLRQPDELELSRKLNQNYLDPEVYHYLVNKEYI--EAYYQL--DCLSDIFCIGIITIETLSNY 992 +G I A++I+R +++H+ L++ + +W+V + + NL++ + ++ L+ ++KD + E+ F +AE ++AIDS+H+ HR + P ++ D RGH+KL D G + + NP N+ + E +K N+ L Y + +YI E + Q + L D + +G+I E L Y Sbjct: 112 TGHIYAMKILRKADMLEKEQVAHIRAERDILVEADSAWVVKMF-YSFQDKRNLYLIMEFLPGGDMMTLL----MKKDTLSEEA----TQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSRGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKK-NRRQL---AYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGY 320
BLAST of SMED30030668 vs. Planmine SMEST
Match: SMESG000071998.1 (SMESG000071998.1) HSP 1 Score: 898.656 bits (2321), Expect = 0.000e+0 Identity = 440/442 (99.55%), Postives = 441/442 (99.77%), Query Frame = 3 Query: 3 PSSNTAAELEYNDKLCISCENLNCLSRFQKFRLYLPRFHDQSFATIIEIPFYLSRKFAIGIENLYENCLKMRLRYHDKPLKMTMQLSLQQSRRFILISMDDQRASSIICPEDMLPLKSKYILNNPSASSGSIAVEIVRNVSAAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETLSNYNFVSFQTRSDEAGPPLLYSCADSFYLKPETQENLERELTKHCGFISEGFYSLILLMLQPKRDRMRGLRMNVQRHRYSRKSGCEYKLRLELLERHPAFDNLELDSIVFRTSPV 1328 PSSNTAAELEYNDKLCISCENLNCLSRFQKFRLYLPRFHDQSFATIIEIPFYLSRKFAIGIENLYENCLKMRLRYHD+PLKMTMQLSLQQSRRFILISMDDQRASSIICPEDMLPLKSKYILNNPSASSGSIAVEIVRNVSAAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETLSNYNFVSFQTRSDEAGPPLLYSCADSFYLKPETQENLE ELTKHCGFISEGFYSLILLMLQPKRDRMRGLRMNVQRHRYSRKSGCEYKLRLELLERHPAFDNLELDSIVFRTSPV Sbjct: 5 PSSNTAAELEYNDKLCISCENLNCLSRFQKFRLYLPRFHDQSFATIIEIPFYLSRKFAIGIENLYENCLKMRLRYHDEPLKMTMQLSLQQSRRFILISMDDQRASSIICPEDMLPLKSKYILNNPSASSGSIAVEIVRNVSAAKMSHLIKNCKALLDIECSWLVNLIGCVYLPVENLFMTLMENCSMNLSFLIQEIHLRKDLIDSESICNLALFILAEFLVAIDSLHERSLTHRFLSPKSVYFDVRGHLKLGDMFESLGADRILMEMLENPNLRQPDELELSRKLNQNYLDPEVYHYLVNKEYIEAYYQLDCLSDIFCIGIITIETLSNYNFVSFQTRSDEAGPPLLYSCADSFYLKPETQENLEMELTKHCGFISEGFYSLILLMLQPKRDRMRGLRMNVQRHRYSRKSGCEYKLRLELLERHPAFDNLELDSIVFRTSPV 446 The following BLAST results are available for this feature:
BLAST of SMED30030668 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30030668 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 4
BLAST of SMED30030668 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of SMED30030668 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of SMED30030668 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of SMED30030668 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30030668 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30030668 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 1
BLAST of SMED30030668 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of SMED30030668 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 2
BLAST of SMED30030668 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of SMED30030668 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 2
BLAST of SMED30030668 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 2
BLAST of SMED30030668 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30030668 ID=SMED30030668|Name=SMED30030668|organism=Schmidtea mediterranea sexual|type=transcript|length=1551bpback to top protein sequence of SMED30030668-orf-1 >SMED30030668-orf-1 ID=SMED30030668-orf-1|Name=SMED30030668-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=451bp PSSNTAAELEYNDKLCISCENLNCLSRFQKFRLYLPRFHDQSFATIIEIPback to top Annotated Terms
The following terms have been associated with this transcript:
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