Hyccin

Overview
NameHyccin
Smed IDSMED30030635
Length (bp)1933
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Hyccin (SMED30030635) t-SNE clustered cells

Violin plots show distribution of expression levels for Hyccin (SMED30030635) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Hyccin (SMED30030635) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Hyccin (SMED30030635) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30030635

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymal cellSMED30030635SMESG000023428.1 dd_Smed_v4_9629_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
head regionSMED30030635SMESG000023428.1 dd_Smed_v6_9629_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Hyccin vs. Ensembl Fly
Match: Hyccin (gene:FBgn0034269 transcript:FBtr0086884)

HSP 1 Score: 58.5362 bits (140), Expect = 1.278e-8
Identity = 37/148 (25.00%), Postives = 70/148 (47.30%), Query Frame = 1 
Query:  823 VNGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQF----------HPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLNL 1236
            ++ +NR +I+T  L  Y + +    ++SL+ + ++ +Q           H  R      P  G         R P L     +E++   Y+++FNG    A++ ++ I  R   E   EVI+V +A++NSL  + S   +  P+GL++
Sbjct:  169 IHAQNRMRILTALLFCYNQQVSQTQKSSLLHLCRVTSQLVNQGFTTKSGHGHRMSYGSDPATGVPFPKPSSPRIP-LSAAFLIELVHAIYFAMFNGFGTIAIQTLDDIHNRAIYEMYSEVILVTSAVRNSLHANPSGQPNDGPMGLSV 315
[Close]
BLAST of Hyccin vs. Ensembl Fly
Match: Hyccin (gene:FBgn0034269 transcript:FBtr0086883)

HSP 1 Score: 58.5362 bits (140), Expect = 1.278e-8
Identity = 37/148 (25.00%), Postives = 70/148 (47.30%), Query Frame = 1 
Query:  823 VNGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQF----------HPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLNL 1236
            ++ +NR +I+T  L  Y + +    ++SL+ + ++ +Q           H  R      P  G         R P L     +E++   Y+++FNG    A++ ++ I  R   E   EVI+V +A++NSL  + S   +  P+GL++
Sbjct:  169 IHAQNRMRILTALLFCYNQQVSQTQKSSLLHLCRVTSQLVNQGFTTKSGHGHRMSYGSDPATGVPFPKPSSPRIP-LSAAFLIELVHAIYFAMFNGFGTIAIQTLDDIHNRAIYEMYSEVILVTSAVRNSLHANPSGQPNDGPMGLSV 315
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BLAST of Hyccin vs. TrEMBL
Match: A0A2Z5XED0 (Uncharacterized protein (Fragment) OS=Drosophila miranda OX=7229 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.436e-11
Identity = 59/227 (25.99%), Postives = 96/227 (42.29%), Query Frame = 1 
Query:  820 VVNGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQF----------HPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLN--LDEKEHIVTSLLSFSDIGLQCGNDWFNTSQGVQDREDSSNNELDNPTQVTSPCKPKLRSIITNASFRTMKLPDDIPI 1464
             VN +NR +I+T  L  Y +++    ++SL+ + ++ +Q           H  R      P  G         R P L     +E++   Y+++FNG    A++ ++ I  R   E   E+I+V +A++NSL  + S   +  P+GL+  L    + VT+ +S                                            +S+ITNASFRT KLPDDIPI
Sbjct:   23 TVNAQNRMRILTTLLFCYNQHVSQTQKSSLLHLCRVTSQLVNQGFTTKSGHGHRMSYGSDPATGATFPKPSSPRIP-LSSSFLIELVHAIYFAMFNGYGTIAMQTLDDIHNRATYEMYTELILVTSAVRNSLHANPSGQPNDGPMGLSVALTPATNTVTTSVS--------------------------------------------KSMITNASFRTKKLPDDIPI 204
[Close]
BLAST of Hyccin vs. TrEMBL
Match: B4J3V1 (GH20398 OS=Drosophila grimshawi OX=7222 GN=Dgri\GH20398 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.649e-11
Identity = 59/224 (26.34%), Postives = 93/224 (41.52%), Query Frame = 1 
Query:  823 VNGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQF----------HPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLNLDEKEHIVTSLLSFSDIGLQCGNDWFNTSQGVQDREDSSNNELDNPTQVTSPCKPKLRSIITNASFRTMKLPDDIPI 1464
            +N +NR +I+T  L  Y + +    ++SL+ + ++ +Q           H  R      P  G         R P L     +E++   YY++FNG    A++ +  I  R + E   E+I+V NA++NSL  + S   +  P+GL+                + L    +   TS                            +S+ITNASFRT KLPDDIPI
Sbjct:  169 INAQNRMRILTALLFCYNQQVSLTQKSSLLHLCRVTSQLVNQGFTTKSGHGHRMSYGSDPATGATFPKPSSPRIP-LSASFLIELVHAIYYAMFNGYGTVAIQTLEDIHNRASYEMYTELILVTNAVRNSLHANPSGQPNDGPMGLS----------------VALTPATNTVTTSVS--------------------------KSMITNASFRTKKLPDDIPI 349
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BLAST of Hyccin vs. TrEMBL
Match: B4GG34 (GL17281 OS=Drosophila persimilis OX=7234 GN=Dper\GL17281 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.279e-10
Identity = 58/225 (25.78%), Postives = 94/225 (41.78%), Query Frame = 1 
Query:  820 VVNGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQF----------HPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLNLDEKEHIVTSLLSFSDIGLQCGNDWFNTSQGVQDREDSSNNELDNPTQVTSPCKPKLRSIITNASFRTMKLPDDIPI 1464
             VN +NR +I+T  L  Y +++    ++SL+ + ++ +Q           H  R      P  G         R P L     +E++   Y+++FNG    A++ ++ I  R   E   E+I+V +A++NSL  + S   +  P+GL+                + L    +   TS                            +S+ITNASFRT KLPDDIPI
Sbjct:  168 TVNAQNRMRILTTLLFCYNQHVSQTQKSSLLHLCRVTSQLVNQGFTTKSGHGHRMSYGSDPATGATFPKPSSPRIP-LSSSFLIELVHAIYFAMFNGYGTIAIQTLDDIHNRATYEMYTELILVTSAVRNSLHANPSGQPNDGPMGLS----------------VALTPATNTVTTSVS--------------------------KSMITNASFRTKKLPDDIPI 349
[Close]
BLAST of Hyccin vs. TrEMBL
Match: A0A3B0JNI9 (Blast:Hyccin OS=Drosophila guanche OX=7266 GN=DGUA_6G002602 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.632e-10
Identity = 58/225 (25.78%), Postives = 94/225 (41.78%), Query Frame = 1 
Query:  820 VVNGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQF----------HPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLNLDEKEHIVTSLLSFSDIGLQCGNDWFNTSQGVQDREDSSNNELDNPTQVTSPCKPKLRSIITNASFRTMKLPDDIPI 1464
             VN +NR +I+T  L  Y +++    ++SL+ + ++ +Q           H  R      P  G         R P L     +E++   Y+++FNG    A++ ++ I  R   E   E+I+V +A++NSL  + S   +  P+GL+                + L    +   TS                            +S+ITNASFRT KLPDDIPI
Sbjct:  168 TVNAQNRMRILTTLLFCYNQHVSQTQKSSLLHLCRVTSQMVNQGFTTKSGHGHRMSYGSDPATGATFPKPSSPRIP-LSSSFLIELVHAIYFAMFNGYGTIAIQTLDDIHNRATYEMYTELILVTSAVRNSLHANPSGQPNDGPMGLS----------------VALTPATNTVTTSVS--------------------------KSMITNASFRTKKLPDDIPI 349
[Close]
BLAST of Hyccin vs. TrEMBL
Match: A0A194RBV5 (Hyccin OS=Papilio machaon OX=76193 GN=RR48_09109 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.886e-10
Identity = 61/220 (27.73%), Postives = 96/220 (43.64%), Query Frame = 1 
Query:  820 VVNGENRSKIITYFLDIYMENICDLSQTSL----ISMMKLITQ-FHPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLNLDEKEHIVTSLLSFSDIGLQCGNDWFNTSQGVQDREDSSNNELDNPTQVTSPCKPKLRSIITNASFRTMKLPDDIPI 1464
             +N +NR K++   L IY   +  L + +L    I+  +++TQ FH          +PG   S   + R P +     LEM+  +Y+++FN     AL+A+  I+ R   E   +V++V +A+ NSL+NS S      P+G+++       T  +S                                            +S+ITNASFRT KLPDDIPI
Sbjct:  185 TINAQNRLKVMAALLFIYNRQLSLLPKLALRHFCIAASRIVTQGFHK---------KPGASKS---IPRIP-VSPNFLLEMVEGSYFAMFNEFYTLALQAVKDIDQRAQYELFADVMLVTSAVMNSLKNSPSGQPCDGPMGISVALSPATTTVTMS--------------------------------------------KSMITNASFRTKKLPDDIPI 347
[Close]
BLAST of Hyccin vs. Ensembl Sea Lamprey
Match: FAM126B (family with sequence similarity 126 member B [Source:HGNC Symbol;Acc:HGNC:28593])

HSP 1 Score: 48.1358 bits (113), Expect = 4.571e-6
Identity = 33/124 (26.61%), Postives = 66/124 (53.23%), Query Frame = 1 
Query:  826 NGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQF----HPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSL 1185
            + +NR +++T+ L  Y   +  +  +S  ++  + +Q      P +++I   PR     + + LS  PE      +++++  YY+++NG  +   EA++ +  R  LEF  E ++V NA+KNSL
Sbjct:  176 SAQNRFEVLTFLLVCYNSVVVQMPSSSYQALCSMCSQVCISGFPRQKRIWKEPR-----ARIALS--PEF----MVQLLTGIYYTIYNGGWDLGNEALDNVIYRAQLEFYPEPLLVGNAMKNSL 288
[Close]
BLAST of Hyccin vs. Planmine SMEST
Match: SMESG000023428.1 (SMESG000023428.1)

HSP 1 Score: 1079.32 bits (2790), Expect = 0.000e+0
Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 1 
Query:   34 MKKLLSPKLSNWFSSIDHLAKSNDKICKPNALKISNIVHEFKTDSSILPSINNIFLDLIYCHHNQDDKGCLETIQSICNYIAKLFTYSDRKIGLIAIEIMPSFLFAYLCICFSTANDPSVPKXXXXXXXXXXXXPFNDSKKSSQCQFLKPFSILDILECCLLTMYNHELENDAIFRSSDHEFRFPYLIDASIYSNAIFNLQNSGIEXXXXXXXXXXXXXLIPNSAPIGNPIYPSNNSLDVNKSTENGSCTDLGSNSVKEYSLVVNGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQFHPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLNLDEKEHIVTSLLSFSDIGLQCGNDWFNTSQGVQDREDSSNNELDNPTQVTSPCKPKLRSIITNASFRTMKLPDDIPIIETNGFQNNINSPSGTXXXXXXXXXXXXXXXXTPRFKFDFRSTEKFEGIKECVIQEQCATSTSTNHSMFFAKSKKPNDDDLNGKNSKNDEQKKLLEY 1755
            MKKLLSPKLSNWFSSIDHLAKSNDKICKPNALKISNIVHEFKTDSSILPSINNIFLDLIYCHHNQDDKGCLETIQSICNYIAKLFTYSDRKIGLIAIEIMPSFLFAYLCICFSTANDPSVPKRQRSRRRSSSISPFNDSKKSSQCQFLKPFSILDILECCLLTMYNHELENDAIFRSSDHEFRFPYLIDASIYSNAIFNLQNSGIESLSRESYSQSSTSLIPNSAPIGNPIYPSNNSLDVNKSTENGSCTDLGSNSVKEYSLVVNGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQFHPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLNLDEKEHIVTSLLSFSDIGLQCGNDWFNTSQGVQDREDSSNNELDNPTQVTSPCKPKLRSIITNASFRTMKLPDDIPIIETNGFQNNINSPSGTNLKNSSSKLASIKSSKTPRFKFDFRSTEKFEGIKECVIQEQCATSTSTNHSMFFAKSKKPNDDDLNGKNSKNDEQKKLLEY
Sbjct:    1 MKKLLSPKLSNWFSSIDHLAKSNDKICKPNALKISNIVHEFKTDSSILPSINNIFLDLIYCHHNQDDKGCLETIQSICNYIAKLFTYSDRKIGLIAIEIMPSFLFAYLCICFSTANDPSVPKRQRSRRRSSSISPFNDSKKSSQCQFLKPFSILDILECCLLTMYNHELENDAIFRSSDHEFRFPYLIDASIYSNAIFNLQNSGIESLSRESYSQSSTSLIPNSAPIGNPIYPSNNSLDVNKSTENGSCTDLGSNSVKEYSLVVNGENRSKIITYFLDIYMENICDLSQTSLISMMKLITQFHPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGVVNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLNLDEKEHIVTSLLSFSDIGLQCGNDWFNTSQGVQDREDSSNNELDNPTQVTSPCKPKLRSIITNASFRTMKLPDDIPIIETNGFQNNINSPSGTNLKNSSSKLASIKSSKTPRFKFDFRSTEKFEGIKECVIQEQCATSTSTNHSMFFAKSKKPNDDDLNGKNSKNDEQKKLLEY 574
The following BLAST results are available for this feature:
BLAST of Hyccin vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Hyccin1.278e-825.00gene:FBgn0034269 transcript:FBtr0086884[more]
Hyccin1.278e-825.00gene:FBgn0034269 transcript:FBtr0086883[more]
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BLAST of Hyccin vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2Z5XED01.436e-1125.99Uncharacterized protein (Fragment) OS=Drosophila m... [more]
B4J3V15.649e-1126.34GH20398 OS=Drosophila grimshawi OX=7222 GN=Dgri\GH... [more]
B4GG341.279e-1025.78GL17281 OS=Drosophila persimilis OX=7234 GN=Dper\G... [more]
A0A3B0JNI91.632e-1025.78Blast:Hyccin OS=Drosophila guanche OX=7266 GN=DGUA... [more]
A0A194RBV52.886e-1027.73Hyccin OS=Papilio machaon OX=76193 GN=RR48_09109 P... [more]
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BLAST of Hyccin vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
FAM126B4.571e-626.61family with sequence similarity 126 member B [Sour... [more]
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BLAST of Hyccin vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Hyccin vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000023428.10.000e+0100.00SMESG000023428.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30030635 ID=SMED30030635|Name=Hyccin|organism=Schmidtea mediterranea sexual|type=transcript|length=1933bp
CTTTCGTATTAATTTTACAATGTTGACAAAACAATGAAAAAATTGCTCTC
ACCGAAATTATCAAATTGGTTTTCATCAATAGATCATCTTGCAAAATCTA
ATGATAAAATTTGTAAGCCTAATGCTCTTAAAATTTCGAATATTGTGCAT
GAATTCAAAACTGATAGTTCAATTTTACCATCAATAAATAATATTTTTTT
GGATTTGATTTATTGCCATCACAATCAAGATGATAAAGGTTGCCTTGAAA
CCATTCAATCAATTTGCAATTATATTGCTAAACTTTTTACATATTCTGAT
AGAAAAATAGGATTGATTGCAATAGAAATAATGCCATCATTTTTATTTGC
ATATCTTTGCATTTGCTTTTCTACAGCTAATGACCCATCAGTTCCTAAAC
GCCAAAGGTCACGCCGAAGGTCTTCGTCGATTTCTCCGTTTAATGATTCT
AAAAAATCCTCTCAATGCCAATTCCTTAAACCATTTTCTATACTCGATAT
ACTCGAATGTTGCTTGTTAACAATGTATAATCATGAATTGGAAAACGATG
CTATTTTTCGAAGTTCAGATCATGAATTTAGATTTCCTTATCTGATAGAT
GCTAGCATATACTCTAATGCTATATTTAACTTACAAAATAGTGGCATCGA
AAGCTTGTCACGAGAATCATATTCACAAAGCAGTACTTCTCTCATTCCAA
ATTCAGCCCCCATCGGAAATCCGATTTATCCTTCAAACAATTCACTAGAT
GTTAATAAATCTACGGAAAATGGATCTTGTACTGATTTAGGATCAAATAG
TGTTAAAGAATACTCATTGGTGGTTAATGGTGAAAATAGATCAAAAATTA
TTACGTATTTCCTTGATATTTATATGGAAAATATCTGCGATCTCAGTCAG
ACTAGTCTTATTTCAATGATGAAATTAATTACACAATTTCATCCTGAAAG
GCAACAAATATTAATTCCCCCACGACCTGGTAGAAAGGCTTCTAATCTTA
AATTATCTCGTTTTCCAGAATTGGGTCGAGAAGTTTATTTGGAAATGATT
TCCATAGCATATTATTCTTTGTTTAATGGAGTTGTCAATCGGGCTCTAGA
AGCAATTAATGCCATTGAAGCAAGAGTCAATTTGGAATTTTGCTATGAAG
TTATTATGGTCGTAAATGCAATTAAAAATAGTCTCGAAAATAGCCTTTCA
AGTTTGCGTGATCATAGTCCTCTTGGTCTGAATTTGGACGAAAAAGAACA
CATAGTTACTTCTTTGTTATCATTCTCTGATATTGGTTTACAATGTGGAA
ATGATTGGTTTAACACGTCTCAGGGAGTTCAGGATCGGGAGGATTCGTCT
AATAATGAACTCGATAATCCAACTCAAGTTACCAGTCCGTGCAAACCAAA
ATTAAGATCCATTATTACAAACGCTTCTTTTCGAACCATGAAACTGCCCG
ATGATATACCTATAATTGAAACTAATGGATTTCAGAATAATATAAATTCA
CCGTCTGGCACGAATTTAAAAAACAGTAGTTCCAAGCTGGCTTCAATAAA
ATCTTCAAAAACTCCGAGGTTCAAATTTGATTTTAGAAGTACAGAAAAAT
TTGAAGGCATCAAAGAATGTGTTATTCAGGAGCAGTGTGCTACATCGACT
TCAACAAATCATTCCATGTTTTTTGCTAAATCGAAAAAACCCAACGATGA
TGATCTCAATGGTAAAAACAGTAAAAATGATGAACAGAAAAAACTACTCG
AATATTAAATTTTTAAACTTTGTTACTCAATAAACCTCAAAGGGGTCTGG
TAAAGTGCAATATTTTTTTATCAAACTGTTTTAGATCTTAACGGGTTATT
TTATATAAGTTTCTAACTATTTGAGCTCCGCTTAGTTGATATACTTTTCT
ATAAATTAGTGTAATCATTAAGTTGTTTTCGAT
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protein sequence of SMED30030635-orf-1

>SMED30030635-orf-1 ID=SMED30030635-orf-1|Name=SMED30030635-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=575bp
MKKLLSPKLSNWFSSIDHLAKSNDKICKPNALKISNIVHEFKTDSSILPS
INNIFLDLIYCHHNQDDKGCLETIQSICNYIAKLFTYSDRKIGLIAIEIM
PSFLFAYLCICFSTANDPSVPKRQRSRRRSSSISPFNDSKKSSQCQFLKP
FSILDILECCLLTMYNHELENDAIFRSSDHEFRFPYLIDASIYSNAIFNL
QNSGIESLSRESYSQSSTSLIPNSAPIGNPIYPSNNSLDVNKSTENGSCT
DLGSNSVKEYSLVVNGENRSKIITYFLDIYMENICDLSQTSLISMMKLIT
QFHPERQQILIPPRPGRKASNLKLSRFPELGREVYLEMISIAYYSLFNGV
VNRALEAINAIEARVNLEFCYEVIMVVNAIKNSLENSLSSLRDHSPLGLN
LDEKEHIVTSLLSFSDIGLQCGNDWFNTSQGVQDREDSSNNELDNPTQVT
SPCKPKLRSIITNASFRTMKLPDDIPIIETNGFQNNINSPSGTNLKNSSS
KLASIKSSKTPRFKFDFRSTEKFEGIKECVIQEQCATSTSTNHSMFFAKS
KKPNDDDLNGKNSKNDEQKKLLEY*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR018619Hyccin
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018619HyccinPFAMPF09790Hyccincoord: 58..474
e-value: 2.2E-30
score: 105.9
IPR018619HyccinPANTHERPTHR31220HYCCIN RELATEDcoord: 155..497
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 546..574
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 430..452
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 549..574
NoneNo IPR availablePANTHERPTHR31220:SF1coord: 155..497