Family with sequence similarity 184 member A

Overview


Name	Family with sequence similarity 184 member A
Smed ID	SMED30030634
Length (bp)	674

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of Family with sequence similarity 184 member A (SMED30030634) t-SNE clustered cells

Violin plots show distribution of expression levels for Family with sequence similarity 184 member A (SMED30030634) in cells (dots) of each of the 12 neoblast clusters.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30030634

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 10

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30030634	h1SMcG0013764	SmedASXL_009434	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
head region	SMED30030634	h1SMcG0013764	SmedASXL_005152	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
head region	SMED30030634	h1SMcG0013764	SmedASXL_001028	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
head region	SMED30030634	h1SMcG0013764	SmedASXL_000397	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
pharynx	SMED30030634	h1SMcG0013764	dd_Smed_v4_16975_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
protonephridia	SMED30030634	h1SMcG0013764	dd_Smed_v4_16975_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
nervous system	SMED30030634	h1SMcG0013764	dd_Smed_v4_16975_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30030634	h1SMcG0013764	dd_Smed_v4_16975_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30030634	h1SMcG0013764	dd_Smed_v4_16975_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
head region	SMED30030634	h1SMcG0013764	dd_Smed_v6_16975_0_1	dd_Smed_v6	PMID:28171748 Stückemann et al., 2017

Note: Hover over icons to view figure legend

Homology

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BLAST of Family with sequence similarity 184 member A vs. Ensembl Human
Match: FAM184A (family with sequence similarity 184 member A [Source:HGNC Symbol;Acc:HGNC:20991])

HSP 1 Score: 80.4925 bits (197), Expect = 6.756e-17
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 3

Query:  222 PHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLT 470
            P   T     ++MD    SQ++H KMSKKIAQLTKVIYALNTKND++E  +  LK  H +EIQQIL ET  ++  LQ K K+T
Sbjct:   22 PSPATAQLAGHSMD---YSQEMHLKMSKKIAQLTKVIYALNTKNDEHESAIQALKDAHEEEIQQILAETREKI--LQYKSKVT 99

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Human
Match: FAM184A (family with sequence similarity 184 member A [Source:HGNC Symbol;Acc:HGNC:20991])

HSP 1 Score: 80.1073 bits (196), Expect = 8.510e-17
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 3

Query:  222 PHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLT 470
            P   T     ++MD    SQ++H KMSKKIAQLTKVIYALNTKND++E  +  LK  H +EIQQIL ET  ++  LQ K K+T
Sbjct:   22 PSPATAQLAGHSMD---YSQEMHLKMSKKIAQLTKVIYALNTKNDEHESAIQALKDAHEEEIQQILAETREKI--LQYKSKVT 99

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Human
Match: FAM184A (family with sequence similarity 184 member A [Source:HGNC Symbol;Acc:HGNC:20991])

HSP 1 Score: 68.5514 bits (166), Expect = 8.400e-13
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 3

Query:  297 MSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLT 470
            MSKKIAQLTKVIYALNTKND++E  +  LK  H +EIQQIL ET  ++  LQ K K+T
Sbjct:    1 MSKKIAQLTKVIYALNTKNDEHESAIQALKDAHEEEIQQILAETREKI--LQYKSKVT 56

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Human
Match: FAM184B (family with sequence similarity 184 member B [Source:HGNC Symbol;Acc:HGNC:29235])

HSP 1 Score: 66.6254 bits (161), Expect = 3.954e-12
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 3

Query:  240 NGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRV 440
             G  + MD D     +H KM KKIAQLTKVIYALNT+ D+ E ++  L++ H +E+Q  + ET  R+
Sbjct:   22 GGAGWRMDCDP---QMHVKMCKKIAQLTKVIYALNTRQDEAEASMEALREAHQEELQNAVAETKARL 85

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Zebrafish
Match: fam184a (family with sequence similarity 184 member A [Source:ZFIN;Acc:ZDB-GENE-041014-214])

HSP 1 Score: 85.8853 bits (211), Expect = 2.482e-19
Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 3

Query:  270 SLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            S +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + K+   ++  ++IQ L++++  +E +
Sbjct:   16 SYTQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKRRIQSLEESMELHERM 102

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Zebrafish
Match: fam184a (family with sequence similarity 184 member A [Source:ZFIN;Acc:ZDB-GENE-041014-214])

HSP 1 Score: 84.7297 bits (208), Expect = 1.833e-18
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + K+   ++  ++IQ L++++  +E +
Sbjct:   44 TQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKRRIQSLEESMELHERM 128

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Zebrafish
Match: zgc:85722 (zgc:85722 [Source:ZFIN;Acc:ZDB-GENE-040516-7])

HSP 1 Score: 77.411 bits (189), Expect = 5.226e-16
Identity = 39/85 (45.88%), Postives = 61/85 (71.76%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            +QDLH KMSKKIAQLTKVIYALNTKND++E  + +LK+ H +E+Q IL ET  ++   + K+    +  +++Q L++++  +E +
Sbjct:   54 TQDLHLKMSKKIAQLTKVIYALNTKNDEHEDAIQSLKEAHDEEVQHILTETREKILHYKSKIGDEADLKRRLQSLEESVELHEHM 138

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Zebrafish
Match: fam184a (family with sequence similarity 184 member A [Source:ZFIN;Acc:ZDB-GENE-041014-214])

HSP 1 Score: 55.0694 bits (131), Expect = 2.216e-8
Identity = 27/68 (39.71%), Postives = 47/68 (69.12%), Query Frame = 3

Query:  327 VIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            VIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + K+   ++  ++IQ L++++  +E +
Sbjct:    1 VIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKRRIQSLEESMELHERM 68

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Xenopus
Match: ip6k2 (inositol hexaphosphate kinase 2 [Source:Xenbase;Acc:XB-GENE-971466])

HSP 1 Score: 72.0182 bits (175), Expect = 4.944e-14
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 3

Query:  282 DLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETK 545
            +LH KMSKKIAQLTKVIYALNTKND++E  +  +K+ H +EIQ+IL ET        +K+ L  N   +  +LK  I + E+ L E K
Sbjct:   46 ELHLKMSKKIAQLTKVIYALNTKNDEHESGIQAIKEAHEEEIQKILAET-------HEKILLYKNKVSEETDLKHKIKALEESLEEHK 126

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Xenopus
Match: ip6k2 (inositol hexaphosphate kinase 2 [Source:Xenbase;Acc:XB-GENE-971466])

HSP 1 Score: 72.0182 bits (175), Expect = 5.820e-14
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 3

Query:  282 DLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETK 545
            +LH KMSKKIAQLTKVIYALNTKND++E  +  +K+ H +EIQ+IL ET        +K+ L  N   +  +LK  I + E+ L E K
Sbjct:   46 ELHLKMSKKIAQLTKVIYALNTKNDEHESGIQAIKEAHEEEIQKILAET-------HEKILLYKNKVSEETDLKHKIKALEESLEEHK 126

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Xenopus
Match: ENSXETT00000035830.1 (protein FAM184B [Source:NCBI gene;Acc:100488800])

HSP 1 Score: 56.225 bits (134), Expect = 1.017e-8
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 3

Query:  210 NNQKPHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTI 512
            N+Q    N   G +    Q +   +LH KM KKIAQLTKVIYALN K D+ E  + +LK+ H  EI  I  ET  +    + K+    +  Q+IQ L++++
Sbjct:    6 NHQHSQYNGTKGQQMLFSQ-AYPHELHGKMCKKIAQLTKVIYALNLKVDEYEYNILSLKEAHQDEIDLISSETKEKFLQYESKIGEEQHLRQRIQSLEESL 105

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Xenopus
Match: ip6k2 (inositol hexaphosphate kinase 2 [Source:Xenbase;Acc:XB-GENE-971466])

HSP 1 Score: 49.2914 bits (116), Expect = 2.295e-6
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 3

Query:  273 LSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETK 545
             SQ LH+K   K+     VIYALNTKND++E  +  +K+ H +EIQ+IL ET        +K+ L  N   +  +LK  I + E+ L E K
Sbjct:   24 FSQLLHYK---KLFSSLLVIYALNTKNDEHESGIQAIKEAHEEEIQKILAET-------HEKILLYKNKVSEETDLKHKIKALEESLEEHK 104

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Mouse
Match: Fam184a (family with sequence similarity 184, member A [Source:MGI Symbol;Acc:MGI:1923156])

HSP 1 Score: 78.5666 bits (192), Expect = 2.476e-16
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 3

Query:  222 PHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYED 527
            P    L G  + MD    SQD+H KMSKKIAQLTKVIYALNT+ND+++  +  LK  H +EIQQIL ET  ++   + K+   ++  ++IQ L+   AS ED
Sbjct:   27 PAAAQLAG--HNMD---YSQDMHLKMSKKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLE---ASLED 120

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Mouse
Match: Fam184b (family with sequence similarity 184, member B [Source:MGI Symbol;Acc:MGI:2442958])

HSP 1 Score: 62.7734 bits (151), Expect = 5.091e-11
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 3

Query:  231 NTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRV 440
            +   G  + MD D    ++H KM KKIAQLTKVIYALNT+ D+ E+++ ++++ H +++Q    ET  R+
Sbjct:   21 DARGGSGWRMDCDP---EMHVKMCKKIAQLTKVIYALNTRQDEVEVSVESIREAHQEDLQDTGAETRTRL 87

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Mouse
Match: Fam184a (family with sequence similarity 184, member A [Source:MGI Symbol;Acc:MGI:1923156])

HSP 1 Score: 47.7506 bits (112), Expect = 5.559e-6
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 3

Query:  327 VIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYED 527
            VIYALNT+ND+++  +  LK  H +EIQQIL ET  ++   + K+   ++  ++IQ L+   AS ED
Sbjct:    1 VIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLE---ASLED 64

[Close]

BLAST of Family with sequence similarity 184 member A vs. UniProt/SwissProt
Match: sp|Q8NB25|F184A_HUMAN (Protein FAM184A OS=Homo sapiens OX=9606 GN=FAM184A PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 4.087e-16
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 3

Query:  222 PHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLT 470
            P   T     ++MD    SQ++H KMSKKIAQLTKVIYALNTKND++E  +  LK  H +EIQQIL ET  ++  LQ K K+T
Sbjct:   22 PSPATAQLAGHSMD---YSQEMHLKMSKKIAQLTKVIYALNTKNDEHESAIQALKDAHEEEIQQILAETREKI--LQYKSKVT 99

[Close]

BLAST of Family with sequence similarity 184 member A vs. UniProt/SwissProt
Match: sp|Q9ULE4|F184B_HUMAN (Protein FAM184B OS=Homo sapiens OX=9606 GN=FAM184B PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 1.899e-11
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 3

Query:  240 NGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRV 440
             G  + MD D     +H KM KKIAQLTKVIYALNT+ D+ E ++  L++ H +E+Q  + ET  R+
Sbjct:   22 GGAGWRMDCDP---QMHVKMCKKIAQLTKVIYALNTRQDEAEASMEALREAHQEELQNAVAETKARL 85

[Close]

BLAST of Family with sequence similarity 184 member A vs. UniProt/SwissProt
Match: sp|Q0KK56|F184B_MOUSE (Protein FAM184B OS=Mus musculus OX=10090 GN=Fam184b PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.561e-10
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 3

Query:  231 NTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRV 440
            +   G  + MD D    ++H KM KKIAQLTKVIYALNT+ D+ E+++ ++++ H +++Q    ET  R+
Sbjct:   21 DARGGSGWRMDCDP---EMHVKMCKKIAQLTKVIYALNTRQDEVEVSVESIREAHQEDLQDTGAETRTRL 87

[Close]

BLAST of Family with sequence similarity 184 member A vs. TrEMBL
Match: A0A210PP69 (FAM184 domain-containing protein OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT17226 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.707e-16
Identity = 47/100 (47.00%), Postives = 70/100 (70.00%), Query Frame = 3

Query:  240 NGFKYTMDQDS-----LSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYE 524
            NG   T+  D      +SQD+H KMSKKIAQLTKVIYALNTKND+++  L+ LK+QH +E+Q++L ET +++   ++KM    +  Q+I  L+ T+A++E
Sbjct:   14 NGKYGTLPADPQKDMEVSQDMHLKMSKKIAQLTKVIYALNTKNDEHDAVLHNLKEQHEEEMQKLLSETKDKISVFKRKMDEENDYRQKIASLETTVANHE 113

[Close]

BLAST of Family with sequence similarity 184 member A vs. TrEMBL
Match: A0A4W5MWT3 (Family with sequence similarity 184, member A OS=Hucho hucho OX=62062 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.992e-16
Identity = 46/100 (46.00%), Postives = 70/100 (70.00%), Query Frame = 3

Query:  231 NTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            N+++    TM+    +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + K+   ++  Q+IQ L++++  +E +
Sbjct:   26 NSVSSSTITME---YTQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKQRIQSLEESMELHERM 122

[Close]

BLAST of Family with sequence similarity 184 member A vs. TrEMBL
Match: A0A4W5MWU5 (Family with sequence similarity 184, member A OS=Hucho hucho OX=62062 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.387e-16
Identity = 46/100 (46.00%), Postives = 70/100 (70.00%), Query Frame = 3

Query:  231 NTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            N+++    TM+    +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + K+   ++  Q+IQ L++++  +E +
Sbjct:   26 NSVSSSTITME---YTQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKQRIQSLEESMELHERM 122

[Close]

BLAST of Family with sequence similarity 184 member A vs. TrEMBL
Match: A0A2R8RM27 (Family with sequence similarity 184 member A OS=Danio rerio OX=7955 GN=fam184a PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.553e-16
Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 3

Query:  270 SLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            S +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + K+   ++  ++IQ L++++  +E +
Sbjct:   16 SYTQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKRRIQSLEESMELHERM 102

[Close]

BLAST of Family with sequence similarity 184 member A vs. TrEMBL
Match: A0A4W4ESE8 (Family with sequence similarity 184, member A OS=Electrophorus electricus OX=8005 PE=4 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.107e-16
Identity = 41/85 (48.24%), Postives = 64/85 (75.29%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + ++   ++  ++IQ L++++ ++E +
Sbjct:   12 TQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKGRISEELDLRRRIQALEESMEAHERM 96

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Cavefish
Match: fam184a (family with sequence similarity 184 member A [Source:NCBI gene;Acc:103041903])

HSP 1 Score: 84.7297 bits (208), Expect = 1.341e-18
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + K+   ++  ++IQ L++++  +E +
Sbjct:   42 TQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKRRIQSLEESMELHERM 126

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Cavefish
Match: fam184a (family with sequence similarity 184 member A [Source:NCBI gene;Acc:103041903])

HSP 1 Score: 84.7297 bits (208), Expect = 1.359e-18
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + K+   ++  ++IQ L++++  +E +
Sbjct:   42 TQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKRRIQSLEESMELHERM 126

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Cavefish
Match: fam184a (family with sequence similarity 184 member A [Source:NCBI gene;Acc:103041903])

HSP 1 Score: 84.7297 bits (208), Expect = 1.481e-18
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++   + K+   ++  ++IQ L++++  +E +
Sbjct:   42 TQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIQTLKEAHEEEVQQILSETREKIMQYKSKISDEMDLKRRIQSLEESMELHERM 126

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Cavefish
Match: zgc:85722 (zgc:85722 [Source:ZFIN;Acc:ZDB-GENE-040516-7])

HSP 1 Score: 79.7221 bits (195), Expect = 7.811e-17
Identity = 40/85 (47.06%), Postives = 60/85 (70.59%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            +QDLH KMSKKIAQLTKVIYALNTKND++E  + +LK+ H  E+Q IL ET +++   + KM       +++Q L++++  +E +
Sbjct:    4 TQDLHLKMSKKIAQLTKVIYALNTKNDEHEEAIQSLKEAHEDEVQHILSETRDKILQYKSKMGDEAELKRRLQSLEESVELHEHM 88

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Sea Lamprey
Match: fam184a (family with sequence similarity 184 member A [Source:ZFIN;Acc:ZDB-GENE-041014-214])

HSP 1 Score: 50.8322 bits (120), Expect = 9.563e-8
Identity = 23/65 (35.38%), Postives = 44/65 (67.69%), Query Frame = 3

Query:  324 KVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIAS 518
            +VIYALNTKND++E  ++ L++ H++E+QQ   ET +R+   Q ++ +     ++ + L++ +AS
Sbjct:    1 QVIYALNTKNDEHEAAVSVLREAHAEEMQQFAAETRHRLLRYQSRLGVESELREKARSLEEALAS 65

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Medaka
Match: fam184a (family with sequence similarity 184 member A [Source:NCBI gene;Acc:101175129])

HSP 1 Score: 84.7297 bits (208), Expect = 1.228e-18
Identity = 45/87 (51.72%), Postives = 66/87 (75.86%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLT--INNTQQIQELKQTIASYEDL 530
            +QDLH KMSKKIAQLTKVIYALNTKND++E  + TLK+ H +E+QQIL ET  ++  LQ K K++  ++  ++IQ L++++  +E +
Sbjct:    4 TQDLHLKMSKKIAQLTKVIYALNTKNDEHEAAIATLKEAHEEEVQQILSETREKI--LQYKSKISDELDLKRRIQSLEESMELHERM 88

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Medaka
Match: zgc:85722 (protein FAM184A [Source:NCBI gene;Acc:105357787])

HSP 1 Score: 75.0998 bits (183), Expect = 2.610e-15
Identity = 37/85 (43.53%), Postives = 60/85 (70.59%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            ++DLH KMSKKIAQLTKVIYALNTKND++E  + +LK+ H  E+Q I+ ET +++   + KM    +  +++  L++++  +E +
Sbjct:   32 TRDLHLKMSKKIAQLTKVIYALNTKNDEHEEEIESLKEAHEDEVQHIVTETRDKIMQYKTKMADEADLRRRLASLEESVELHEHM 116

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Medaka
Match: zgc:85722 (protein FAM184A [Source:NCBI gene;Acc:105357787])

HSP 1 Score: 75.0998 bits (183), Expect = 3.005e-15
Identity = 37/85 (43.53%), Postives = 60/85 (70.59%), Query Frame = 3

Query:  276 SQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDL 530
            ++DLH KMSKKIAQLTKVIYALNTKND++E  + +LK+ H  E+Q I+ ET +++   + KM    +  +++  L++++  +E +
Sbjct:   32 TRDLHLKMSKKIAQLTKVIYALNTKNDEHEEEIESLKEAHEDEVQHIVTETRDKIMQYKTKMADEADLRRRLASLEESVELHEHM 116

[Close]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Medaka
Match: fam184b (trichohyalin [Source:NCBI gene;Acc:101174322])

HSP 1 Score: 60.8474 bits (146), Expect = 1.655e-10
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 3

Query:  231 NTLNGFKYTM---DQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEG 446
            +T+NG    +   +Q+     +H KM KKIAQLTKVIY+LN +N+++E  L  L   H  E+ +IL ET +  EG
Sbjct:   22 STVNGTAAELPNIEQELYDYQMHSKMCKKIAQLTKVIYSLNMRNEEHETALQALSHAHHDELHRILVETCHEGEG 96

[Close]

BLAST of Family with sequence similarity 184 member A vs. Planmine SMEST
Match: SMESG000058677.1 (SMESG000058677.1)

HSP 1 Score: 249.98 bits (637), Expect = 1.296e-76
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 3

Query:  177 MTSTTSDYFLNNNQKPHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETKQENE 557
            MTSTTSDYFLNNNQKPHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDET+NRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETKQ+ E
Sbjct:    1 MTSTTSDYFLNNNQKPHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETNNRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETKQKFE 127

[Close]

BLAST of Family with sequence similarity 184 member A vs. Planmine SMEST
Match: SMESG000058677.1 (SMESG000058677.1)

HSP 1 Score: 249.595 bits (636), Expect = 2.066e-76
Identity = 124/127 (97.64%), Postives = 126/127 (99.21%), Query Frame = 3

Query:  177 MTSTTSDYFLNNNQKPHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETKQENE 557
            MTSTTSDYFLNNNQKPHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDET+NRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETKQ+ E
Sbjct:    1 MTSTTSDYFLNNNQKPHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETNNRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETKQKFE 127

[Close]

BLAST of Family with sequence similarity 184 member A vs. Planmine SMEST
Match: SMESG000058677.1 (SMESG000058677.1)

HSP 1 Score: 189.889 bits (481), Expect = 2.749e-55
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 3

Query:  258 MDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETKQ 548
            MDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDET+NRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETKQ
Sbjct:    1 MDQDSLSQDLHFKMSKKIAQLTKVIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETNNRVEGLQKKMKLTINNTQQIQELKQTIASYEDLLTETKQ 97

The following BLAST results are available for this feature:

BLAST of Family with sequence similarity 184 member A vs. Ensembl Human
BLAST of Family with sequence similarity 184 member A vs. Ensembl Celegans
BLAST of Family with sequence similarity 184 member A vs. Ensembl Fly
BLAST of Family with sequence similarity 184 member A vs. Ensembl Zebrafish
BLAST of Family with sequence similarity 184 member A vs. Ensembl Xenopus
BLAST of Family with sequence similarity 184 member A vs. Ensembl Mouse
BLAST of Family with sequence similarity 184 member A vs. UniProt/SwissProt
BLAST of Family with sequence similarity 184 member A vs. TrEMBL
BLAST of Family with sequence similarity 184 member A vs. Ensembl Cavefish
BLAST of Family with sequence similarity 184 member A vs. Ensembl Sea Lamprey
BLAST of Family with sequence similarity 184 member A vs. Ensembl Yeast
BLAST of Family with sequence similarity 184 member A vs. Ensembl Nematostella
BLAST of Family with sequence similarity 184 member A vs. Ensembl Medaka
BLAST of Family with sequence similarity 184 member A vs. Planmine SMEST

BLAST of Family with sequence similarity 184 member A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 4


Match Name	E-value	Identity	Description
FAM184A	6.756e-17	54.22	family with sequence similarity 184 member A [Sour...	[more]
FAM184A	8.510e-17	54.22	family with sequence similarity 184 member A [Sour...	[more]
FAM184A	8.400e-13	63.79	family with sequence similarity 184 member A [Sour...	[more]
FAM184B	3.954e-12	46.27	family with sequence similarity 184 member B [Sour...	[more]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Family with sequence similarity 184 member A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Family with sequence similarity 184 member A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
fam184a	2.482e-19	49.43	family with sequence similarity 184 member A [Sour...	[more]
fam184a	1.833e-18	49.41	family with sequence similarity 184 member A [Sour...	[more]
zgc:85722	5.226e-16	45.88	zgc:85722 [Source:ZFIN;Acc:ZDB-GENE-040516-7]	[more]
fam184a	2.216e-8	39.71	family with sequence similarity 184 member A [Sour...	[more]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 4


Match Name	E-value	Identity	Description
ip6k2	4.944e-14	48.86	inositol hexaphosphate kinase 2 [Source:Xenbase;Ac...	[more]
ip6k2	5.820e-14	48.86	inositol hexaphosphate kinase 2 [Source:Xenbase;Ac...	[more]
ENSXETT00000035830.1	1.017e-8	38.61	protein FAM184B [Source:NCBI gene;Acc:100488800]	[more]
ip6k2	2.295e-6	39.56	inositol hexaphosphate kinase 2 [Source:Xenbase;Ac...	[more]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 3


Match Name	E-value	Identity	Description
Fam184a	2.476e-16	47.06	family with sequence similarity 184, member A [Sou...	[more]
Fam184b	5.091e-11	41.43	family with sequence similarity 184, member B [Sou...	[more]
Fam184a	5.559e-6	41.79	family with sequence similarity 184, member A [Sou...	[more]

BLAST of Family with sequence similarity 184 member A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3


Match Name	E-value	Identity	Description
sp\|Q8NB25\|F184A_HUMAN	4.087e-16	54.22	Protein FAM184A OS=Homo sapiens OX=9606 GN=FAM184A...	[more]
sp\|Q9ULE4\|F184B_HUMAN	1.899e-11	46.27	Protein FAM184B OS=Homo sapiens OX=9606 GN=FAM184B...	[more]
sp\|Q0KK56\|F184B_MOUSE	3.561e-10	41.43	Protein FAM184B OS=Mus musculus OX=10090 GN=Fam184...	[more]

BLAST of Family with sequence similarity 184 member A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A210PP69	1.707e-16	47.00	FAM184 domain-containing protein OS=Mizuhopecten y...	[more]
A0A4W5MWT3	4.992e-16	46.00	Family with sequence similarity 184, member A OS=H...	[more]
A0A4W5MWU5	5.387e-16	46.00	Family with sequence similarity 184, member A OS=H...	[more]
A0A2R8RM27	5.553e-16	49.43	Family with sequence similarity 184 member A OS=Da...	[more]
A0A4W4ESE8	9.107e-16	48.24	Family with sequence similarity 184, member A OS=E...	[more]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4


Match Name	E-value	Identity	Description
fam184a	1.341e-18	49.41	family with sequence similarity 184 member A [Sour...	[more]
fam184a	1.359e-18	49.41	family with sequence similarity 184 member A [Sour...	[more]
fam184a	1.481e-18	49.41	family with sequence similarity 184 member A [Sour...	[more]
zgc:85722	7.811e-17	47.06	zgc:85722 [Source:ZFIN;Acc:ZDB-GENE-040516-7]	[more]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
fam184a	9.563e-8	35.38	family with sequence similarity 184 member A [Sour...	[more]

BLAST of Family with sequence similarity 184 member A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Family with sequence similarity 184 member A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Family with sequence similarity 184 member A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 4


Match Name	E-value	Identity	Description
fam184a	1.228e-18	51.72	family with sequence similarity 184 member A [Sour...	[more]
zgc:85722	2.610e-15	43.53	protein FAM184A [Source:NCBI gene;Acc:105357787]	[more]
zgc:85722	3.005e-15	43.53	protein FAM184A [Source:NCBI gene;Acc:105357787]	[more]
fam184b	1.655e-10	42.67	trichohyalin [Source:NCBI gene;Acc:101174322]	[more]

BLAST of Family with sequence similarity 184 member A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3


Match Name	E-value	Identity	Description
SMESG000058677.1	1.296e-76	97.64	SMESG000058677.1	[more]
SMESG000058677.1	2.066e-76	97.64	SMESG000058677.1	[more]
SMESG000058677.1	2.749e-55	98.97	SMESG000058677.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30030634 ID=SMED30030634|Name=Family with sequence similarity 184 member A|organism=Schmidtea mediterranea sexual|type=transcript|length=674bp
ATTATGACTTGTGATTTTTATAATTGTATTTTGTTTTAAATACATGTTTA
ATATATTTATGGTTTATTGAAATATAAATAACTATATTTTAAAAACAGCT
TGTTTAAATCATTTAAAGTAGCTGTATCAATTTTAAATATATAGCAACTA
ATTTATTAATTTATATGATTTAATTTATGACTTCGACAACGAGTGATTAT
TTTCTAAATAACAATCAAAAACCTCATAAGAATACTTTGAATGGTTTCAA
ATATACTATGGACCAAGATTCTCTATCGCAGGATTTACATTTCAAGATGT
CAAAGAAAATCGCCCAATTGACCAAAGTTATTTATGCATTAAATACTAAA
AATGATGACAACGAAATGACATTAAACACGTTGAAGCAGCAACACAGCAA
AGAGATTCAGCAGATTCTGGATGAAACTAGTAACAGAGTAGAAGGGTTGC
AGAAAAAAATGAAATTAACTATTAATAATACCCAACAAATTCAAGAATTG
AAGCAAACGATTGCGTCATATGAAGATTTATTAACAGAAACAAAGCAGGA
AAATGAGCCCAATTCTATATTGCATGGAAATTGGTGGGAAAAGAAGAGAG
AAAATATTGTAGAACAATCTTCGGAGTCAAACATTTCAAAAGTCGGCGAC
CAATCAGGAAAACTATGAATAAAA

protein sequence of SMED30030634-orf-1

>SMED30030634-orf-1 ID=SMED30030634-orf-1|Name=SMED30030634-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=164bp
MTSTTSDYFLNNNQKPHKNTLNGFKYTMDQDSLSQDLHFKMSKKIAQLTK
VIYALNTKNDDNEMTLNTLKQQHSKEIQQILDETSNRVEGLQKKMKLTIN
NTQQIQELKQTIASYEDLLTETKQENEPNSILHGNWWEKKRENIVEQSSE
SNISKVGDQSGKL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000016	pharynx
PLANA:0000020	protonephridia
PLANA:0000099	neuron
PLANA:0000418	head
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR039478	FAM184A/B_N
IPR029605	FAM184

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..101
None	No IPR available	COILS	Coil	Coil	coord: 105..125
IPR039478	Protein FAM184A/B, N-terminal	PFAM	PF15665	FAM184	coord: 51..124 e-value: 2.4E-16 score: 60.2
IPR029605	FAM184 family	PANTHER	PTHR18870	FAMILY NOT NAMED	coord: 33..126

Main menu

Family with sequence similarity 184 member A

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 10

Owlery

blazegraph-runner