SMED30030536

Overview
NameSMED30030536
Smed IDSMED30030536
Length (bp)695
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30030536 (SMED30030536) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30030536 (SMED30030536) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30030536

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
prepharyngeal regionSMED30030536h1SMcG0008245 SmedASXL_009200SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30030536h1SMcG0008245 SmedASXL_009200SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
parapharyngeal regionSMED30030536h1SMcG0008245 dd_Smed_v6_27328_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
head regionSMED30030536h1SMcG0008245 OX_Smed_1.0.17453ox_Smed_v2PMID:24238224
Kao et al., 2013		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30030536 vs. TrEMBL
Match: G7YF65 (Calcium-activated potassium channel subunit beta-2 OS=Clonorchis sinensis OX=79923 GN=CLF_106446 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.638e-22
Identity = 66/181 (36.46%), Postives = 100/181 (55.25%), Query Frame = 2 
Query:   74 YRKTRLKICCSICLSGAFVGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFI---TNKDNQTAILYETIYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNNSEAXXXXXXXXXXXXXXXIWP-GIFMIFTLISSVLF 604
            YR   LK+    C +      IVECI A+L V PY++E  F  ++C +++  + + A + CENR +KD  RFPC+ + +   +   N T IL++ I T+ QYK F C+T  C   +  N  ++     R+  +N F CY +  + +EALL K  S K L  ++ WP G+F  FT I+ VLF
Sbjct:   12 YRVACLKVLYLTCATVITTTFIVECILAHLVVQPYLHESAFTLTNCSYVHAHIVNHAVK-CENRCSKDRSRFPCLQVLVRYTSRGANHTVILFDNIATYHQYKAFGCATSSCHHRDADNTAYVLRFEHRIKHRNHFECYIHSVHENEALLTKFYSAKTLFHVIFWPVGLF--FTSIACVLF 189
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BLAST of SMED30030536 vs. TrEMBL
Match: A0A075AHQ6 (Uncharacterized protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=T265_13199 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.552e-22
Identity = 65/181 (35.91%), Postives = 100/181 (55.25%), Query Frame = 2 
Query:   74 YRKTRLKICCSICLSGAFVGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFI---TNKDNQTAILYETIYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNNSEAXXXXXXXXXXXXXXXIWP-GIFMIFTLISSVLF 604
            YR   LK+    C +      IVECI A+L V PY++E  F  ++C +++  + + A + CENR +KD  RFPC+ + +   +   N T IL++ I T+ QYK F C+T  C   +  N  ++     R+  +N F CY +  + +EALL K  S + L  ++ WP G+F  FT I+ VLF
Sbjct:   44 YRVGCLKVLYLTCATVITTTFIVECILAHLVVQPYLHESAFTLTNCSYVHAHIVNHAVK-CENRCSKDRSRFPCLQVLVRYTSRGANHTVILFDNIATYHQYKAFGCATSSCHHRDAENTAYVLRFEHRIKHRNHFECYIHSVHENEALLTKFYSARTLFHVIFWPVGLF--FTSIACVLF 221
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BLAST of SMED30030536 vs. TrEMBL
Match: A0A3R7CBH0 (Uncharacterized protein OS=Clonorchis sinensis OX=79923 GN=CSKR_9879s PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.816e-21
Identity = 66/181 (36.46%), Postives = 100/181 (55.25%), Query Frame = 2 
Query:   74 YRKTRLKICCSICLSGAFVGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFI---TNKDNQTAILYETIYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNNSEAXXXXXXXXXXXXXXXIWP-GIFMIFTLISSVLF 604
            YR   LK+    C +      IVECI A+L V PY++E  F  ++C +++  + + A + CENR +KD  RFPC+ + +   +   N T IL++ I T+ QYK F C+T  C   +  N  ++     R+  +N F CY +  + +EALL K  S K L  ++ WP G+F  FT I+ VLF
Sbjct:   63 YRVACLKVLYLTCATVITTTFIVECILAHLVVQPYLHESAFTLTNCSYVHAHIVNHAVK-CENRCSKDRSRFPCLQVLVRYTSRGANHTVILFDNIATYHQYKAFGCATSSCHHRDADNTAYVLRFEHRIKHRNHFECYIHSVHENEALLTKFYSAKTLFHVIFWPVGLF--FTSIACVLF 240
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BLAST of SMED30030536 vs. TrEMBL
Match: A0A4S2KQU4 (Uncharacterized protein (Fragment) OS=Opisthorchis felineus OX=147828 GN=CRM22_010674 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.752e-20
Identity = 63/181 (34.81%), Postives = 100/181 (55.25%), Query Frame = 2 
Query:   74 YRKTRLKICCSICLSGAFVGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFI---TNKDNQTAILYETIYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNNSEAXXXXXXXXXXXXXXXIWP-GIFMIFTLISSVLF 604
            YR   LK+    C +      IVECI A+L V PY++E  F  ++C +++  + + A + CENR +KD  RFPC+ + +   +   N T IL++ I T+ QYK + C+T  C   +  N  ++     R+  +N F CY +  + +EALL K  S + L  ++ WP G+F+  T I+ VLF
Sbjct:   47 YRVGCLKVLYLTCATVITTTFIVECILAHLVVQPYLHESAFTLTNCSYVHAHIVNHAVK-CENRCSKDRSRFPCLQVLVRYTSRGANHTVILFDNIATYHQYKAYGCATSSCHHRDADNTAYVLRFEHRIKHRNHFECYIHSVHENEALLTKFYSARTLFHVIFWPVGLFL--TSIACVLF 224
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BLAST of SMED30030536 vs. TrEMBL
Match: A0A4E0RIE4 (Calcium activated potassium channel subunit OS=Fasciola hepatica OX=6192 GN=D915_001494 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.430e-20
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2 
Query:  110 CLSGAFVGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFI---TNKDNQTAILYETIYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNNSEAXXXXXXXXXXXXXXXIWP 562
            C +      I+ECI  +L V PY++E  F ++SC +L+  +     + CEN+ +KD  RFPC+ + +   T  DN T +LY+ I T+  YK   C+T  C   +  N  W+     R+  Q  F CY +  +  EALLFK  S   +   + WP
Sbjct:   26 CATVITTSFIIECILVHLVVQPYIHESAFSHTSCTYLHSDIIRQNVK-CENKCSKDRSRFPCLKVLVSYYTGGDNHTVVLYDNIATYQHYKYLGCATSSCHHRDTDNTAWVDQFRLRVQHQKHFGCYIHATHEDEALLFKFYSTNTVFHAVFWP 178
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BLAST of SMED30030536 vs. Planmine SMEST
Match: SMESG000020744.1 (SMESG000020744.1)

HSP 1 Score: 225.328 bits (573), Expect = 5.463e-76
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 2 
Query:   50 MFSQTEAIYRKTRLKICCSICLSGAFVGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFITNKDNQTAILYETIYTFLQYKLFQ 382
            MFSQTEAIYRKTRLKICCSICLSGAFVGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFITNKDNQTAILYETIYTFLQYKLFQ
Sbjct:    1 MFSQTEAIYRKTRLKICCSICLSGAFVGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFITNKDNQTAILYETIYTFLQYKLFQ 111
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BLAST of SMED30030536 vs. Planmine SMEST
Match: SMESG000053268.1 (SMESG000053268.1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.958e-18
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 2 
Query:  131 GLIVECIAAYLYVVPYVNELNFRNSSCQFLNLS----LASSAYRTCENRNTKDVIRFPCVTIFIT-------NKDNQTAILYETIYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNNSEAXXXXXXXXXXXXXXXIWP-GIFMI 577
            G I+ECI  +L + PY+ E  F  ++C + N S    L S     CEN+ TKD  +FPCV + +         +  Q   LY+   T+ +YK  +CST PC +    N  W+ +    L  ++ F+CYYN  ++   LL+KL    ++L  ++WP GIF++
Sbjct:   33 GFILECILLHLMLTPYLAEQEFEQTTCVYRNSSSRFILLSDLQLRCENKCTKDTGKFPCVWLLVNYVIPNSGQRQLQDGYLYDYYRTYNRYKKQRCSTSPCHLLLSDNIDWVISFDRTLYSKHNFSCYYNTKDHMSVLLYKLYPKSLILHCILWPFGIFIV 193
[Close]
BLAST of SMED30030536 vs. Planmine SMEST
Match: SMESG000047387.1 (SMESG000047387.1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.873e-16
Identity = 54/169 (31.95%), Postives = 89/169 (52.66%), Query Frame = 2 
Query:  110 CLSGAFVGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPC--VTIFITNKDNQ-TAILYETIYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNNSEAXXXXXXXXXXXXXXXIWP-GIFMIFTLISSVLF 604
            C + +   LIV  I  +L V+P+ +E +F +S+C  +N ++ +S    CEN+ +KD   FPC  +T   T+ D +  A +Y+ I T   Y+  QC+  PC      N + +    +R+ K   F CY N  +  E LL+K  S+ +    + WP G+ +I  LI +VL+
Sbjct:   20 CSTLSLCALIVGAILIHLVVIPFTHENSFYSSTCTLINTNITTSI--KCENKCSKDRSMFPCLQITAKYTDLDQEFLAYVYDHIATLSHYRKSQCAISPCFSSTKDNGIIVSEFQSRMRKTPTFACYINAEHRDEVLLYKFYSIGMFWHCVAWPSGLLVISLLILAVLY 186
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BLAST of SMED30030536 vs. Planmine SMEST
Match: SMESG000017226.1 (SMESG000017226.1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.955e-16
Identity = 50/170 (29.41%), Postives = 87/170 (51.18%), Query Frame = 2 
Query:  137 IVECIAAYLYVVPYVNELNFRNSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFITNKDNQ---TAILYETIYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNNSEAXXXXXXXXXXXXXXXIWPGIFMIFTLISSVLFFVYLQCIINRD 637
            IV CI  +L ++PY++E +F ++ C  LN +      R CEN+ +KD  +F C+ I +  + N    +A LYE + T   +    C+T PC  EE+ N + +      + +Q  F C+ +I + SEALL+K       L   +WP + ++ +  S  + +   +C +  D
Sbjct:   55 IVVCILMHLVIIPYLHETSFISAQCN-LNETRMGDEVR-CENKCSKDRSKFKCLQIIVNYRRNNKMFSAYLYEHVATLRHFSKNHCATSPCHKEEIDNYLIVSRFNRDIKRQRNFNCFTSIKHPSEALLYKFYDASTFLHCTLWPLLLIVSSATSLTVIYQIDKCRVWHD 222
[Close]
BLAST of SMED30030536 vs. Planmine SMEST
Match: SMESG000032303.1 (SMESG000032303.1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.982e-16
Identity = 55/178 (30.90%), Postives = 93/178 (52.25%), Query Frame = 2 
Query:  128 VGLIVECIAAYLYVVPYVNELNFRNSSCQFLNLS-LASSAYRTCENRNTKDVIRFPCVTIFITNKDNQT-----AILYETIYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNNSEAXXXXXXXXXXXXXXXIWPGIFMIFTLISSVLFFVYLQC-IINRDK 640
             GLI+ECI  YL V+PY++E  + N++C +   S +     + CEN+ TK+   F C+ I ++ K   +       L++ + TF ++K+ +CST+PC      N+ W       L ++  F C+Y     +  LL+KL S  I++  ++WP   +   LIS  L +    C I ++DK
Sbjct:   29 AGLIIECILLYLVVIPYLSEQKYINTTCHYTEGSKIGKMILKKCENKCTKETSFFYCLFIKVSYKKIHSKQLTIGYLFDNLRTFSKHKVDKCSTMPCLGLLEDNRRWAMAFNESLYRRTYFQCFYKDDETTNVLLYKLQSPTIVMNCIVWPCTLLTLGLISLFLTWYCAGCKIWSQDK 206
The following BLAST results are available for this feature:
BLAST of SMED30030536 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
G7YF652.638e-2236.46Calcium-activated potassium channel subunit beta-2... [more]
A0A075AHQ68.552e-2235.91Uncharacterized protein (Fragment) OS=Opisthorchis... [more]
A0A3R7CBH01.816e-2136.46Uncharacterized protein OS=Clonorchis sinensis OX=... [more]
A0A4S2KQU41.752e-2034.81Uncharacterized protein (Fragment) OS=Opisthorchis... [more]
A0A4E0RIE42.430e-2033.77Calcium activated potassium channel subunit OS=Fas... [more]
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BLAST of SMED30030536 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030536 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000020744.15.463e-76100.00SMESG000020744.1[more]
SMESG000053268.13.958e-1833.54SMESG000053268.1[more]
SMESG000047387.11.873e-1631.95SMESG000047387.1[more]
SMESG000017226.11.955e-1629.41SMESG000017226.1[more]
SMESG000032303.15.982e-1630.90SMESG000032303.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30030536 ID=SMED30030536|Name=SMED30030536|organism=Schmidtea mediterranea sexual|type=transcript|length=695bp
TTCCGATCTAATAAAGGGATTTAGAAAGTAAAAAATTCTTTTTGGGATTA
TGTTTTCCCAAACTGAGGCAATTTATCGGAAGACTCGACTAAAGATTTGT
TGCTCAATTTGTCTTTCTGGAGCCTTTGTAGGGTTGATCGTTGAATGTAT
CGCTGCGTATCTTTACGTTGTTCCATACGTCAACGAATTGAATTTCCGAA
ATAGTTCTTGTCAATTTCTAAATTTGAGCCTGGCCAGCAGTGCTTATAGA
ACGTGTGAAAATAGAAATACAAAAGATGTCATTAGGTTTCCATGTGTAAC
GATATTCATTACCAATAAAGACAATCAAACTGCAATCTTATATGAAACTA
TTTACACTTTTTTACAATATAAATTATTTCAGTGTTCCACTGTTCCATGT
TCAGTCGAAGAAGTATACAATCAGGTTTGGATACAAAACTTGGCAGCGCG
ATTGTCAAAGCAAAATAAATTTACTTGTTATTATAACATTTACAACAACT
CAGAAGCTCTTTTATTTAAATTAACATCTCTAAAGATTCTTCTTCAACTG
CTTATTTGGCCCGGTATTTTTATGATATTTACACTAATATCTTCAGTATT
GTTTTTTGTATATTTGCAATGTATTATAAACAGGGATAAATAGTGACGAA
AATGACATTATAATTACTGGAAGAATTATTTGTTTTAAATTTCAC
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protein sequence of SMED30030536-orf-1

>SMED30030536-orf-1 ID=SMED30030536-orf-1|Name=SMED30030536-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=198bp
MFSQTEAIYRKTRLKICCSICLSGAFVGLIVECIAAYLYVVPYVNELNFR
NSSCQFLNLSLASSAYRTCENRNTKDVIRFPCVTIFITNKDNQTAILYET
IYTFLQYKLFQCSTVPCSVEEVYNQVWIQNLAARLSKQNKFTCYYNIYNN
SEALLFKLTSLKILLQLLIWPGIFMIFTLISSVLFFVYLQCIINRDK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0000420parapharyngeal region
Vocabulary: INTERPRO
TermDefinition
IPR003930K_chnl_Ca-activ_BK_bsu
Vocabulary: biological process
TermDefinition
GO:0006813potassium ion transport
GO:0071805potassium ion transmembrane transport
Vocabulary: molecular function
TermDefinition
GO:0015269calcium-activated potassium channel activity
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003930Potassium channel, calcium-activated, BK, beta subunitPFAMPF03185CaKBcoord: 36..177
e-value: 6.6E-14
score: 52.0
IPR003930Potassium channel, calcium-activated, BK, beta subunitPANTHERPTHR10258CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETAcoord: 10..192
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 167..189