PDZ domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30030352 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of PDZ domain-containing protein vs. Ensembl Human
Match: PDLIM2 (PDZ and LIM domain 2 [Source:HGNC Symbol;Acc:HGNC:13992]) HSP 1 Score: 51.2174 bits (121), Expect = 2.330e-7 Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEI 441 PWGF + GG D P+ V KV G A + L PGD+I+ I G HA+ +++I Sbjct: 12 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKI 69
BLAST of PDZ domain-containing protein vs. Ensembl Human
Match: PDLIM2 (PDZ and LIM domain 2 [Source:HGNC Symbol;Acc:HGNC:13992]) HSP 1 Score: 51.6026 bits (122), Expect = 2.558e-7 Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEI 441 PWGF + GG D P+ V KV G A + L PGD+I+ I G HA+ +++I Sbjct: 12 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKI 69
BLAST of PDZ domain-containing protein vs. Ensembl Human
Match: PDLIM2 (PDZ and LIM domain 2 [Source:HGNC Symbol;Acc:HGNC:13992]) HSP 1 Score: 51.2174 bits (121), Expect = 3.394e-7 Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEI 441 PWGF + GG D P+ V KV G A + L PGD+I+ I G HA+ +++I Sbjct: 12 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKI 69
BLAST of PDZ domain-containing protein vs. Ensembl Human
Match: PDLIM2 (PDZ and LIM domain 2 [Source:HGNC Symbol;Acc:HGNC:13992]) HSP 1 Score: 51.6026 bits (122), Expect = 5.634e-7 Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEI 441 PWGF + GG D P+ V KV G A + L PGD+I+ I G HA+ +++I Sbjct: 12 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKI 69
BLAST of PDZ domain-containing protein vs. Ensembl Human
Match: PDLIM2 (PDZ and LIM domain 2 [Source:HGNC Symbol;Acc:HGNC:13992]) HSP 1 Score: 51.9878 bits (123), Expect = 6.553e-7 Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEI 441 PWGF + GG D P+ V KV G A + L PGD+I+ I G HA+ +++I Sbjct: 12 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKI 69
BLAST of PDZ domain-containing protein vs. Ensembl Fly
Match: Zasp52 (gene:FBgn0265991 transcript:FBtr0329910) HSP 1 Score: 59.6918 bits (143), Expect = 3.746e-10 Identity = 25/72 (34.72%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 265 KPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 +PWGF LQGG+D P+ V KV ++ ++GL+PGD +++I + + H + ++R+GN TV++ Sbjct: 17 QPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQR 88
BLAST of PDZ domain-containing protein vs. Ensembl Fly
Match: Zasp52 (gene:FBgn0265991 transcript:FBtr0342711) HSP 1 Score: 61.2326 bits (147), Expect = 6.370e-10 Identity = 25/72 (34.72%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 265 KPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 +PWGF LQGG+D P+ V KV ++ ++GL+PGD +++I + + H + ++R+GN TV++ Sbjct: 17 QPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQR 88
BLAST of PDZ domain-containing protein vs. Ensembl Fly
Match: Zasp52 (gene:FBgn0265991 transcript:FBtr0392901) HSP 1 Score: 61.2326 bits (147), Expect = 6.445e-10 Identity = 25/72 (34.72%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 265 KPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 +PWGF LQGG+D P+ V KV ++ ++GL+PGD +++I + + H + ++R+GN TV++ Sbjct: 17 QPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQR 88
BLAST of PDZ domain-containing protein vs. Ensembl Fly
Match: Zasp52 (gene:FBgn0265991 transcript:FBtr0100388) HSP 1 Score: 61.2326 bits (147), Expect = 6.696e-10 Identity = 25/72 (34.72%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 265 KPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 +PWGF LQGG+D P+ V KV ++ ++GL+PGD +++I + + H + ++R+GN TV++ Sbjct: 17 QPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQR 88
BLAST of PDZ domain-containing protein vs. Ensembl Fly
Match: Zasp52 (gene:FBgn0265991 transcript:FBtr0087315) HSP 1 Score: 60.8474 bits (146), Expect = 7.077e-10 Identity = 30/102 (29.41%), Postives = 54/102 (52.94%), Query Frame = 1 Query: 265 KPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALE 570 +PWGF LQGG+D P+ V KV ++ ++GL+PGD +++I + + H + ++R+GN TV++ + + + + PNSP L+ Sbjct: 17 QPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQRGGSTWRPHVTPTGNVPQ------PNSPYLQ 112
BLAST of PDZ domain-containing protein vs. Ensembl Zebrafish
Match: pdlim7 (PDZ and LIM domain 7 [Source:NCBI gene;Acc:393813]) HSP 1 Score: 53.1434 bits (126), Expect = 2.135e-7 Identity = 31/116 (26.72%), Postives = 58/116 (50.00%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNV--AAYNSTMNQINEPMHQMSPNS 558 MNI + L+ PWGF LQGG D P+ V ++T G A ++G+ GD ++ I ++ TH + + +I A + + T+ + A +S + ++P + +P++ Sbjct: 1 MNIYCVTLN-----GPAPWGFRLQGGKDFNTPLTVSRLTPGGKAAQAGVGVGDWVVSIFDANAEEMTHVEAQNKIRAATDSLKLTLSRYTHTTGFAKKDSLTSSSSQPKYSFAPST 111
BLAST of PDZ domain-containing protein vs. Ensembl Zebrafish
Match: pdlim5b (PDZ and LIM domain 5b [Source:ZFIN;Acc:ZDB-GENE-040426-908]) HSP 1 Score: 50.8322 bits (120), Expect = 3.389e-7 Identity = 42/155 (27.10%), Postives = 71/155 (45.81%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPM-------------HQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQTEQNQS 693 PWGF LQGG D +P+ + K+T G A K+ + GDV++ I TH + + +I ++ ++ + + EPM + +SP S A + R +IE+ H P+ Q +S++IL Q+ TE +Q+ Sbjct: 14 PWGFRLQGGKDFSMPLTISKLTDGGKAAKAKISVGDVVLSIDGIHTERMTHLEAQNKIKACSGNLNLSLMRPSSVIKVETPK----EEPMTKTARKPVLETEVNHVSPLSDASKKR--LIEDTEDWH--PRTGTTQSRSFRIL-AQITGTENDQA 159
BLAST of PDZ domain-containing protein vs. Ensembl Zebrafish
Match: ldb3a (LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]) HSP 1 Score: 49.6766 bits (117), Expect = 5.332e-7 Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF LQGG D +P+ V ++T A S L GD+I+ I G TH + + +I A + T+++ Sbjct: 13 PWGFRLQGGKDFNMPLTVSRITPGSKAASSNLIQGDIIVAIDGVSTDGMTHLEAQNKIKSANFNLALTMQR 83
BLAST of PDZ domain-containing protein vs. Ensembl Zebrafish
Match: ldb3a (LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]) HSP 1 Score: 50.447 bits (119), Expect = 5.354e-7 Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF LQGG D +P+ V ++T A S L GD+I+ I G TH + + +I A + T+++ Sbjct: 13 PWGFRLQGGKDFNMPLTVSRITPGSKAASSNLIQGDIIVAIDGVSTDGMTHLEAQNKIKSANFNLALTMQR 83
BLAST of PDZ domain-containing protein vs. Ensembl Zebrafish
Match: ldb3a (LIM domain binding 3a [Source:ZFIN;Acc:ZDB-GENE-040121-6]) HSP 1 Score: 50.8322 bits (120), Expect = 5.977e-7 Identity = 25/71 (35.21%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF LQGG D +P+ V ++T A S L GD+I+ I G TH + + +I A + T+++ Sbjct: 13 PWGFRLQGGKDFNMPLTVSRITPGSKAASSNLIQGDIIVAIDGVSTDGMTHLEAQNKIKSANFNLALTMQR 83
BLAST of PDZ domain-containing protein vs. Ensembl Xenopus
Match: gsx2 (GS homeobox 2 [Source:Xenbase;Acc:XB-GENE-492505]) HSP 1 Score: 56.225 bits (134), Expect = 4.254e-8 Identity = 33/98 (33.67%), Postives = 45/98 (45.92%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK---------RDFNVAAYNSTMNQINEP 534 PWGF LQGGS++ LP+ V KV + A + GL D ++ I G THAQ I G + V++ R V S+ N+I P Sbjct: 16 PWGFRLQGGSEKNLPLIVSKVRKRSKACRGGLRENDELVSINGKACAGLTHAQAMLMIDSIGGSLHIHVRRAAAGAQTAPRTQRVLPSPSSPNRIRSP 113
BLAST of PDZ domain-containing protein vs. Ensembl Xenopus
Match: arhgef40 (Rho guanine nucleotide exchange factor 40 [Source:Xenbase;Acc:XB-GENE-6050452]) HSP 1 Score: 55.4546 bits (132), Expect = 4.787e-8 Identity = 30/105 (28.57%), Postives = 53/105 (50.48%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK----------RDFNVAAYNSTMNQINEPMHQMSP 552 PWGF LQGG D +P+ + ++T G A +G+ GD ++QI T TH + + +I + N++ + + R +N A ++ +N+I P +P Sbjct: 13 PWGFRLQGGKDFNMPLSISRLTPGGKAELAGVNVGDWLLQIEGDSTTSMTHIEAQNKIRASSNKLGLVLSRYGVHTPESQGRKYNFAP-STALNKIARPFGTGTP 116
BLAST of PDZ domain-containing protein vs. Ensembl Xenopus
Match: arhgef40 (Rho guanine nucleotide exchange factor 40 [Source:Xenbase;Acc:XB-GENE-6050452]) HSP 1 Score: 51.9878 bits (123), Expect = 2.162e-7 Identity = 30/113 (26.55%), Postives = 53/113 (46.90%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK------------------RDFNVAAYNSTMNQINEPMHQMSP 552 PWGF LQGG D +P+ + ++T G A +G+ GD ++QI T TH + + +I + N++ + + R +N A ++ +N+I P +P Sbjct: 13 PWGFRLQGGKDFNMPLSISRLTPGGKAELAGVNVGDWLLQIEGDSTTSMTHIEAQNKIRASSNKLGLVLSRFAVGVNQAKGVHTPESQGRKYNFAP-STALNKIARPFGTGTP 124
BLAST of PDZ domain-containing protein vs. Ensembl Xenopus
Match: arhgef40 (Rho guanine nucleotide exchange factor 40 [Source:Xenbase;Acc:XB-GENE-6050452]) HSP 1 Score: 52.373 bits (124), Expect = 3.651e-7 Identity = 23/71 (32.39%), Postives = 40/71 (56.34%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF LQGG D +P+ + ++T G A +G+ GD ++QI T TH + + +I + N++ + + Sbjct: 113 PWGFRLQGGKDFNMPLSISRLTPGGKAELAGVNVGDWLLQIEGDSTTSMTHIEAQNKIRASSNKLGLVLSR 183
BLAST of PDZ domain-containing protein vs. Ensembl Xenopus
Match: arhgef40 (Rho guanine nucleotide exchange factor 40 [Source:Xenbase;Acc:XB-GENE-6050452]) HSP 1 Score: 52.373 bits (124), Expect = 3.968e-7 Identity = 30/113 (26.55%), Postives = 53/113 (46.90%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK------------------RDFNVAAYNSTMNQINEPMHQMSP 552 PWGF LQGG D +P+ + ++T G A +G+ GD ++QI T TH + + +I + N++ + + R +N A ++ +N+I P +P Sbjct: 113 PWGFRLQGGKDFNMPLSISRLTPGGKAELAGVNVGDWLLQIEGDSTTSMTHIEAQNKIRASSNKLGLVLSRFAVGVNQAKGVHTPESQGRKYNFAP-STALNKIARPFGTGTP 224
BLAST of PDZ domain-containing protein vs. Ensembl Mouse
Match: Pdlim2 (PDZ and LIM domain 2 [Source:MGI Symbol;Acc:MGI:2384850]) HSP 1 Score: 51.9878 bits (123), Expect = 2.160e-7 Identity = 23/71 (32.39%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF + GG D P+ V KVT G A + L PGD+I+ I HA+ +++I ++ + + + + Sbjct: 12 PWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDR 82
BLAST of PDZ domain-containing protein vs. Ensembl Mouse
Match: Pdlim2 (PDZ and LIM domain 2 [Source:MGI Symbol;Acc:MGI:2384850]) HSP 1 Score: 52.373 bits (124), Expect = 3.009e-7 Identity = 23/71 (32.39%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF + GG D P+ V KVT G A + L PGD+I+ I HA+ +++I ++ + + + + Sbjct: 12 PWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDR 82
BLAST of PDZ domain-containing protein vs. Ensembl Mouse
Match: Pdlim2 (PDZ and LIM domain 2 [Source:MGI Symbol;Acc:MGI:2384850]) HSP 1 Score: 52.373 bits (124), Expect = 3.009e-7 Identity = 23/71 (32.39%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF + GG D P+ V KVT G A + L PGD+I+ I HA+ +++I ++ + + + + Sbjct: 12 PWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDR 82
BLAST of PDZ domain-containing protein vs. Ensembl Mouse
Match: Pdlim5 (PDZ and LIM domain 5 [Source:MGI Symbol;Acc:MGI:1927489]) HSP 1 Score: 49.2914 bits (116), Expect = 1.550e-6 Identity = 39/159 (24.53%), Postives = 66/159 (41.51%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMH--------QMSPNSPALEPRAEIIEE-----HVWKHGG--------------PKFKNVQPKSYKILEQ 663 PWGF LQGG D +P+ + + G A ++ + GDV++ I G TH + + +I ++ T+++ AA S + + H ++ P P PR I+E H+ H P+ Q +S++IL Q Sbjct: 13 PWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS---AAAKSEPVSVQKKTHVTNNPGTVKIPPKRP---PRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWRPRTGTTQSRSFRILAQ 165
BLAST of PDZ domain-containing protein vs. Ensembl Mouse
Match: Ldb3 (LIM domain binding 3 [Source:MGI Symbol;Acc:MGI:1344412]) HSP 1 Score: 49.6766 bits (117), Expect = 2.112e-6 Identity = 23/71 (32.39%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF LQGG D +P+ + ++T A +S L GD+++ I TH + + +I A + T++K Sbjct: 12 PWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQK 82
BLAST of PDZ domain-containing protein vs. UniProt/SwissProt
Match: sp|A1ZA47|ZASP_DROME (PDZ and LIM domain protein Zasp OS=Drosophila melanogaster OX=7227 GN=Zasp52 PE=1 SV=2) HSP 1 Score: 61.2326 bits (147), Expect = 6.712e-9 Identity = 25/72 (34.72%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 265 KPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 +PWGF LQGG+D P+ V KV ++ ++GL+PGD +++I + + H + ++R+GN TV++ Sbjct: 17 QPWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRSGNNFVITVQR 88
BLAST of PDZ domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6AYD6|PDLI2_RAT (PDZ and LIM domain protein 2 OS=Rattus norvegicus OX=10116 GN=Pdlim2 PE=1 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 1.415e-6 Identity = 24/75 (32.00%), Postives = 39/75 (52.00%), Query Frame = 1 Query: 256 VTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 V PWGF + GG D P+ V KVT G A + L PGD+I+ I HA+ +++I ++ + + + + Sbjct: 8 VGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGESAESMLHAEAQSKIRQSASPLRLQLDR 82
BLAST of PDZ domain-containing protein vs. UniProt/SwissProt
Match: sp|Q6P7E4|PDLI7_DANRE (PDZ and LIM domain protein 7 OS=Danio rerio OX=7955 GN=pdlim7 PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 1.860e-6 Identity = 33/117 (28.21%), Postives = 60/117 (51.28%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAA---YNSTMNQINEPMHQMSPNS 558 MNI + L+ PWGF LQGG D P+ V ++T G A ++G+ GD ++ I ++ TH + + +I A + + T+ R F+ A +S + ++P + +P++ Sbjct: 1 MNIYCVTLN-----GPAPWGFRLQGGKDFNTPLTVSRLTPGGKAAQAGVGVGDWVVSIFDANAEEMTHVEAQNKIRAATDSLKLTL-SRAFHPAGGEQKDSLTSSSSQPKYSFAPST 111
BLAST of PDZ domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8R1G6|PDLI2_MOUSE (PDZ and LIM domain protein 2 OS=Mus musculus OX=10090 GN=Pdlim2 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 2.104e-6 Identity = 23/71 (32.39%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF + GG D P+ V KVT G A + L PGD+I+ I HA+ +++I ++ + + + + Sbjct: 12 PWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDR 82
BLAST of PDZ domain-containing protein vs. UniProt/SwissProt
Match: sp|Q3T0C8|PDLI2_BOVIN (PDZ and LIM domain protein 2 OS=Bos taurus OX=9913 GN=PDLIM2 PE=2 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 2.255e-6 Identity = 24/62 (38.71%), Postives = 33/62 (53.23%), Query Frame = 1 Query: 256 VTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEI 441 V PWGF + GG D P+ V KVT G A + L PGD+I+ I HA+ +++I Sbjct: 8 VGPAPWGFRISGGRDFHTPIMVTKVTERGKAEAADLRPGDIIVSINGESAKDMLHAEAQSKI 69
BLAST of PDZ domain-containing protein vs. TrEMBL
Match: G4V895 (PDZ domain-containing protein OS=Schistosoma mansoni OX=6183 GN=Smp_006860.2 PE=4 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 6.298e-94 Identity = 133/190 (70.00%), Postives = 156/190 (82.11%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQTEQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGEN 786 M +E +V+SLRR +DK WGFVLQGG DQGLPVFVHKVTRNGIAHKSGLEPGDVI++I + +TG HAQ+KAEILRAGN++DF VKKRDFNV AYN TM QI + NS + EPRAEI+EEH+W+HGGP FKNVQPKSYKILEQQLPQ+ P SV+DR +DERSPYL+ATE+TIQ+AYGE+ Sbjct: 1 MALEPVVISLRRATSDKSWGFVLQGGVDQGLPVFVHKVTRNGIAHKSGLEPGDVILKICATPITGMVHAQVKAEILRAGNDLDFMVKKRDFNVVAYNQTMQQIAASNRPIDVNSNSPEPRAEIVEEHLWRHGGPTFKNVQPKSYKILEQQLPQSSMGGPAPGSVFDRSMDERSPYLQATEQTIQKAYGES 190
BLAST of PDZ domain-containing protein vs. TrEMBL
Match: A0A183LQ31 (PDZ domain-containing protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS5906 PE=4 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 1.835e-93 Identity = 136/193 (70.47%), Postives = 160/193 (82.90%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQI---NEPMHQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQTEQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGEN 786 M +E +V+SLRR +DK WGFVLQGG DQGLPVFVHKVTRNGIAHKSGLEPGDVI++I + +TG HAQ+KAEILRAGN++DF VKKRDFNV AYN TM QI N P+ ++ NSP EPRAEI+EEH+W+HGGP FKNVQPKSYKILEQQLPQ+ P SV+DR +DERSPYL+ATE+TIQ+AYGE+ Sbjct: 1 MALEPVVISLRRATSDKSWGFVLQGGVDQGLPVFVHKVTRNGIAHKSGLEPGDVILKICATPITGMIHAQVKAEILRAGNDLDFMVKKRDFNVVAYNQTMQQIAASNRPI-DVASNSP--EPRAEIVEEHLWRHGGPTFKNVQPKSYKILEQQLPQSSMGGPAPGSVFDRSMDERSPYLQATEQTIQKAYGES 190
BLAST of PDZ domain-containing protein vs. TrEMBL
Match: Q86EC1 (Clone ZZD551 mRNA sequence OS=Schistosoma japonicum OX=6182 GN=EWB00_006190 PE=2 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 7.027e-93 Identity = 130/190 (68.42%), Postives = 155/190 (81.58%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQTEQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGEN 786 M +E +V+SLRR +DK WGF LQGG DQGLPVFVHKVTRNGIAHKSGLEPGDV+++I + +TG THAQ+KAEILRAGN++DF VKKRDFNV AYN TM Q+ + S EPRAEI+EEH+W+HGGP FKNVQPKSYKILEQQLPQ+ + P SV+DR +DERSPYL+ATE+TIQ+AYGE+ Sbjct: 1 MALEPVVISLRRQTSDKSWGFALQGGVDQGLPVFVHKVTRNGIAHKSGLEPGDVVLKICATPITGMTHAQVKAEILRAGNDLDFMVKKRDFNVVAYNQTMQQLAAANRSIDIASGEPEPRAEIVEEHLWRHGGPTFKNVQPKSYKILEQQLPQSSMGGAAPGSVFDRSMDERSPYLQATEQTIQKAYGES 190
BLAST of PDZ domain-containing protein vs. TrEMBL
Match: G4V896 (PDZ domain-containing protein OS=Schistosoma mansoni OX=6183 GN=Smp_006860.1 PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 5.347e-92 Identity = 134/197 (68.02%), Postives = 157/197 (79.70%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQT-------EQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGEN 786 M +E +V+SLRR +DK WGFVLQGG DQGLPVFVHKVTRNGIAHKSGLEPGDVI++I + +TG HAQ+KAEILRAGN++DF VKKRDFNV AYN TM QI + NS + EPRAEI+EEH+W+HGGP FKNVQPKSYKILEQQLPQ+ E P SV+DR +DERSPYL+ATE+TIQ+AYGE+ Sbjct: 1 MALEPVVISLRRATSDKSWGFVLQGGVDQGLPVFVHKVTRNGIAHKSGLEPGDVILKICATPITGMVHAQVKAEILRAGNDLDFMVKKRDFNVVAYNQTMQQIAASNRPIDVNSNSPEPRAEIVEEHLWRHGGPTFKNVQPKSYKILEQQLPQSSMGANNYEMTGPAPGSVFDRSMDERSPYLQATEQTIQKAYGES 197
BLAST of PDZ domain-containing protein vs. TrEMBL
Match: A0A183QUV9 (PDZ domain-containing protein OS=Schistosoma rodhaini OX=6188 PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 5.835e-92 Identity = 134/197 (68.02%), Postives = 157/197 (79.70%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQT-------EQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGEN 786 M +E +V+SLRR +DK WGFVLQGG DQGLPVFVHKVTRNGIAHKSGLEPGDVI++I + +TG HAQ+KAEILRAGN++DF VKKRDFNV AYN TM QI + NS + EPRAEI+EEH+W+HGGP FKNVQPKSYKILEQQLPQ+ E P SV+DR +DERSPYL+ATE+TIQ+AYGE+ Sbjct: 1 MALEPVVISLRRATSDKSWGFVLQGGVDQGLPVFVHKVTRNGIAHKSGLEPGDVILKICATPITGMVHAQVKAEILRAGNDLDFMVKKRDFNVVAYNQTMQQIAASNRPVDVNSNSPEPRAEIVEEHLWRHGGPTFKNVQPKSYKILEQQLPQSSMGANNYEMTGPAPGSVFDRSMDERSPYLQATEQTIQKAYGES 197
BLAST of PDZ domain-containing protein vs. Ensembl Cavefish
Match: pdlim7 (PDZ and LIM domain 7 [Source:NCBI gene;Acc:103047884]) HSP 1 Score: 52.373 bits (124), Expect = 1.059e-7 Identity = 27/88 (30.68%), Postives = 46/88 (52.27%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 MNI + L+ PWGF LQGG D +P+ V ++T G A ++G+ GD ++ I + TH + + +I A + + T+ + Sbjct: 9 MNIYCVTLA-----GPAPWGFRLQGGKDFSMPLTVSRLTPGGKAAQAGVGVGDWVVSISETNAEEMTHVEAQNKIRAATDSLTLTLSR 91
BLAST of PDZ domain-containing protein vs. Ensembl Cavefish
Match: pdlim7 (PDZ and LIM domain 7 [Source:NCBI gene;Acc:103047884]) HSP 1 Score: 53.1434 bits (126), Expect = 1.133e-7 Identity = 28/93 (30.11%), Postives = 47/93 (50.54%), Query Frame = 1 Query: 202 DLYFIMNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 D MNI + L+ PWGF LQGG D +P+ V ++T G A ++G+ GD ++ I + TH + + +I A + + T+ + Sbjct: 4 DTKEAMNIYCVTLA-----GPAPWGFRLQGGKDFSMPLTVSRLTPGGKAAQAGVGVGDWVVSISETNAEEMTHVEAQNKIRAATDSLTLTLSR 91
BLAST of PDZ domain-containing protein vs. Ensembl Cavefish
Match: ldb3b (LIM domain-binding protein 3-like [Source:NCBI gene;Acc:103025742]) HSP 1 Score: 52.7582 bits (125), Expect = 1.459e-7 Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF LQGG D +P+ + ++T N A L GD+I+ I G TH + + +I A +++ T++K Sbjct: 13 PWGFRLQGGKDFNMPLTISRITPNSKASTGNLTQGDIIMAIDGVSTEGMTHLEAQNKIKLAIHKLSLTMQK 83
BLAST of PDZ domain-containing protein vs. Ensembl Cavefish
Match: ldb3b (LIM domain-binding protein 3-like [Source:NCBI gene;Acc:103025742]) HSP 1 Score: 52.7582 bits (125), Expect = 2.014e-7 Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF LQGG D +P+ + ++T N A L GD+I+ I G TH + + +I A +++ T++K Sbjct: 13 PWGFRLQGGKDFNMPLTISRITPNSKASTGNLTQGDIIMAIDGVSTEGMTHLEAQNKIKLAIHKLSLTMQK 83
BLAST of PDZ domain-containing protein vs. Ensembl Cavefish
Match: pdlim7 (PDZ and LIM domain 7 [Source:NCBI gene;Acc:103047884]) HSP 1 Score: 53.1434 bits (126), Expect = 2.095e-7 Identity = 27/88 (30.68%), Postives = 46/88 (52.27%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 MNI + L+ PWGF LQGG D +P+ V ++T G A ++G+ GD ++ I + TH + + +I A + + T+ + Sbjct: 9 MNIYCVTLA-----GPAPWGFRLQGGKDFSMPLTVSRLTPGGKAAQAGVGVGDWVVSISETNAEEMTHVEAQNKIRAATDSLTLTLSR 91
BLAST of PDZ domain-containing protein vs. Ensembl Sea Lamprey
Match: grasp (GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:ZFIN;Acc:ZDB-GENE-060312-30]) HSP 1 Score: 51.2174 bits (121), Expect = 1.154e-7 Identity = 40/140 (28.57%), Postives = 66/140 (47.14%), Query Frame = 1 Query: 241 SLRRTVT-----DKPWGFVLQGG-------SDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGN----EIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEEHVWKHG 612 S RRT+T D+ +GF LQ S+ + +V KV G A ++G++ GD++I I +S + G H QI I AGN E++F + R + + + + + MH+ E R+ + +E HG Sbjct: 39 STRRTITIEKEDDESYGFELQTYGLRNRVVSELEMCTYVFKVKEEGPAERAGMKAGDILITINDSNVEGIPHKQIVDIIREAGNCLRIEVEFGIMARRMEL---QTRLQYLKQTMHEKCK-----ELRSLLQQEQRLVHG 170
BLAST of PDZ domain-containing protein vs. Ensembl Sea Lamprey
Match: rapgef2 (Rap guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6959]) HSP 1 Score: 51.6026 bits (122), Expect = 1.423e-7 Identity = 27/98 (27.55%), Postives = 50/98 (51.02%), Query Frame = 1 Query: 238 LSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINE 531 +++RR + P GF L GG D+G P++V + A +SGL+ GD I+++ +Q +I++ + TVK N+ +Y +++ E Sbjct: 347 VTVRRASRESPLGFKLDGGQDRGFPLYVSSLDLQSKASESGLKRGDQILEVNGQNFDNVLLSQ-AMDIMKKSTHLSITVKN---NLLSYKEICHRLEE 440
BLAST of PDZ domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000002484.1 (pep scaffold:Pmarinus_7.0:GL476548:370238:411117:1 gene:ENSPMAG00000002245.1 transcript:ENSPMAT00000002484.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 50.0618 bits (118), Expect = 3.460e-7 Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVK 477 PWGF L GG D P+ + +VT +A + L PGDVI+ I THA+ + E ++A + T+K Sbjct: 12 PWGFRLVGGRDLDQPLTISRVTPGSVASSANLSPGDVILAIEGENAEEMTHAEAQ-ERIKACSTATLTLK 80
BLAST of PDZ domain-containing protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007081.1 (pep scaffold:Pmarinus_7.0:GL476780:360940:430661:-1 gene:ENSPMAG00000006392.1 transcript:ENSPMAT00000007081.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 49.6766 bits (117), Expect = 6.225e-7 Identity = 21/71 (29.58%), Postives = 41/71 (57.75%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF LQGG D +P+ + +++ A ++ + PGDV++QI + TH + + +I + + T+++ Sbjct: 13 PWGFRLQGGKDFNMPLTISRISPGSKAAQATVVPGDVVLQIDGTPTDSMTHLEAQTKIKNSVGNLRLTLQR 83
BLAST of PDZ domain-containing protein vs. Ensembl Nematostella
Match: EDO41810 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S390]) HSP 1 Score: 50.447 bits (119), Expect = 6.326e-7 Identity = 24/94 (25.53%), Postives = 49/94 (52.13%), Query Frame = 1 Query: 235 VLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTM 516 V+SL R D+PWGF + GG + G +FV+K+ A +G+ D ++++ + T+ + + ++L + + +KK N+A + + Sbjct: 246 VISLERQSHDQPWGFSIAGGRENGFGIFVYKIDPECSAFTAGVRKADQVLKVNDISFENITYDKAR-DLLSSSIRLTLALKK---NIAGFKDLL 335
BLAST of PDZ domain-containing protein vs. Ensembl Nematostella
Match: EDO47763 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKY1]) HSP 1 Score: 44.669 bits (104), Expect = 2.606e-6 Identity = 25/71 (35.21%), Postives = 35/71 (49.30%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF L+GG D G V ++T G A +GL D I+ I TH + + I R GN + V++ Sbjct: 15 PWGFRLKGGKDFGQIPTVSQLTPGGKAITNGLRVEDQILSINGMGCEDMTHMEAQESIKRTGNALRLQVRR 85
BLAST of PDZ domain-containing protein vs. Ensembl Nematostella
Match: EDO30217 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1F1]) HSP 1 Score: 43.5134 bits (101), Expect = 5.722e-6 Identity = 22/71 (30.99%), Postives = 33/71 (46.48%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 PWGF LQGG D P+ + KV + A ++G+ P + I N +H I R G ++ + K Sbjct: 16 PWGFRLQGGKDFRAPLKIAKVEQGSKAERAGIRPNLYVRSINNDPCETMSHGDALNNIKRTGTNLNLLLCK 86
BLAST of PDZ domain-containing protein vs. Ensembl Medaka
Match: pdlim5a (PDZ and LIM domain protein 5 [Source:NCBI gene;Acc:101174195]) HSP 1 Score: 60.8474 bits (146), Expect = 1.537e-10 Identity = 41/151 (27.15%), Postives = 65/151 (43.05%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEE-----HVWKHGG--------------PKFKNVQPKSYKILEQ 663 PWGF LQGG D +P+ + ++T +G A K G+ GDV++ I G H + + +I + + T++K T P+ P+S PR I++ HV HG P+ Q +S++IL Q Sbjct: 14 PWGFRLQGGKDFNMPLTISRLTNDGKAAKGGIAVGDVVLSIDGISTDGMNHLEAQNKIKNCSSNLSLTLQKASSVQKPPPVTPKTGASPLVTNGPHSILKAPRKHIVDTDIHFYHVPSHGDASRKRIMEDTEDWRPRSGTTQSRSFRILAQ 164
BLAST of PDZ domain-containing protein vs. Ensembl Medaka
Match: pdlim7 (PDZ and LIM domain 7 [Source:NCBI gene;Acc:101167302]) HSP 1 Score: 58.151 bits (139), Expect = 1.162e-9 Identity = 43/164 (26.22%), Postives = 77/164 (46.95%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYN---------STMNQINEPMHQMS-PNSPALEP----RAEIIEE-HVWKHGGPKFKNVQPKSYKILEQ 663 MN+ T+ L+ PWGF LQGG D +P+ V ++T G A ++G+ GD ++ I ++ TH + + +I A + + T+ + V + ++I +P H + N P P + +IE+ W+ P+ Q +S++IL Q Sbjct: 1 MNLYTVTLN-----GPAPWGFRLQGGKDFSMPLTVSRLTPGGKAAQAGVGVGDWVVSICDANAEDMTHVEAQNKIRAATDSLTLTLSRGSKLVEERKMETLDKGELTYFDEIYQPKHGLRMENMPCFIPNDRSKKRLIEDTEDWQ---PRTGTTQSRSFRILAQ 156
BLAST of PDZ domain-containing protein vs. Ensembl Medaka
Match: pdlim7 (PDZ and LIM domain 7 [Source:NCBI gene;Acc:101167302]) HSP 1 Score: 58.5362 bits (140), Expect = 3.304e-9 Identity = 41/151 (27.15%), Postives = 73/151 (48.34%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYN-STMNQINEPMHQMSPNSPALEPRAEIIEE-HVWKHGGPKFKNVQPKSYKILEQ 663 MN+ T+ L+ PWGF LQGG D +P+ V ++T G A ++G+ GD ++ I ++ TH + + +I A + + T+ + V T+++ M M P + +IE+ W+ P+ Q +S++IL Q Sbjct: 1 MNLYTVTLN-----GPAPWGFRLQGGKDFSMPLTVSRLTPGGKAAQAGVGVGDWVVSICDANAEDMTHVEAQNKIRAATDSLTLTLSRGSKLVEERKMETLDKHGLRMENMPCFIPNDRSKKRLIEDTEDWQ---PRTGTTQSRSFRILAQ 143
BLAST of PDZ domain-containing protein vs. Ensembl Medaka
Match: pdlim7 (PDZ and LIM domain 7 [Source:NCBI gene;Acc:101167302]) HSP 1 Score: 57.7658 bits (138), Expect = 6.180e-9 Identity = 43/164 (26.22%), Postives = 77/164 (46.95%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYN---------STMNQINEPMHQMS-PNSPALEP----RAEIIEE-HVWKHGGPKFKNVQPKSYKILEQ 663 MN+ T+ L+ PWGF LQGG D +P+ V ++T G A ++G+ GD ++ I ++ TH + + +I A + + T+ + V + ++I +P H + N P P + +IE+ W+ P+ Q +S++IL Q Sbjct: 1 MNLYTVTLN-----GPAPWGFRLQGGKDFSMPLTVSRLTPGGKAAQAGVGVGDWVVSICDANAEDMTHVEAQNKIRAATDSLTLTLSRGSKLVEERKMETLDKGELTYFDEIYQPKHGLRMENMPCFIPNDRSKKRLIEDTEDWQ---PRTGTTQSRSFRILAQ 156
BLAST of PDZ domain-containing protein vs. Ensembl Medaka
Match: pdlim5a (PDZ and LIM domain protein 5 [Source:NCBI gene;Acc:101174195]) HSP 1 Score: 57.7658 bits (138), Expect = 6.510e-9 Identity = 42/159 (26.42%), Postives = 66/159 (41.51%), Query Frame = 1 Query: 268 PWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNS--------PALEPRAEIIEE-----HVWKHGG--------------PKFKNVQPKSYKILEQ 663 PWGF LQGG D +P+ + ++T +G A K G+ GDV++ I G H + + +I + + T++K T P+ P+S P PR I++ HV HG P+ Q +S++IL Q Sbjct: 14 PWGFRLQGGKDFNMPLTISRLTNDGKAAKGGIAVGDVVLSIDGISTDGMNHLEAQNKIKNCSSNLSLTLQKASSVQKPPPVTPKTGASPLVTNGPHSILKKPQQHPPRAPRKHIVDTDIHFYHVPSHGDASRKRIMEDTEDWRPRSGTTQSRSFRILAQ 172
BLAST of PDZ domain-containing protein vs. Planmine SMEST
Match: SMESG000015639.1 (SMESG000015639.1) HSP 1 Score: 395.586 bits (1015), Expect = 1.851e-140 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1 Query: 217 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQTEQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGEN 786 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQTEQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGEN Sbjct: 1 MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQTEQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGEN 190
BLAST of PDZ domain-containing protein vs. Planmine SMEST
Match: SMESG000032524.1 (SMESG000032524.1) HSP 1 Score: 188.734 bits (478), Expect = 7.549e-59 Identity = 93/198 (46.97%), Postives = 129/198 (65.15%), Query Frame = 1 Query: 208 YFIMNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQI-NEPM-----HQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQTEQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGE 783 + I E IVL LRR TDK WGFVLQGGSDQGLP+F+HK+ R I HK+GL+PGDVI++I L G T+ ++KA ILRAGNE++ VKKR FN+A YN T+ I NE H+ N + +++E +WK+G PK++NVQ ++YK+LE+ LP N S++D D +R YL+ +E +I + +GE Sbjct: 10 FLIFMSEIIVLFLRRDNTDKSWGFVLQGGSDQGLPIFIHKLMRQSIGHKAGLDPGDVILRINGQTLLGMTNEEVKAIILRAGNEMEMRVKKRGFNLATYNETIQSIHNEEFHGDHNHKSHNNVDHNQEEVKVVETPLWKNGSPKYRNVQSRTYKLLEELLP----NDECSGSIFDHDNSDRKRYLQTSEASILKTFGE 203
BLAST of PDZ domain-containing protein vs. Planmine SMEST
Match: SMESG000032524.1 (SMESG000032524.1) HSP 1 Score: 186.808 bits (473), Expect = 2.088e-58 Identity = 92/192 (47.92%), Postives = 127/192 (66.15%), Query Frame = 1 Query: 226 ETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQI-NEPM-----HQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSYKILEQQLPQTEQNQSTPASVWDRDLDERSPYLKATEKTIQRAYGE 783 E IVL LRR TDK WGFVLQGGSDQGLP+F+HK+ R I HK+GL+PGDVI++I L G T+ ++KA ILRAGNE++ VKKR FN+A YN T+ I NE H+ N + +++E +WK+G PK++NVQ ++YK+LE+ LP N S++D D +R YL+ +E +I + +GE Sbjct: 3 EIIVLFLRRDNTDKSWGFVLQGGSDQGLPIFIHKLMRQSIGHKAGLDPGDVILRINGQTLLGMTNEEVKAIILRAGNEMEMRVKKRGFNLATYNETIQSIHNEEFHGDHNHKSHNNVDHNQEEVKVVETPLWKNGSPKYRNVQSRTYKLLEELLP----NDECSGSIFDHDNSDRKRYLQTSEASILKTFGE 190
BLAST of PDZ domain-containing protein vs. Planmine SMEST
Match: SMESG000015397.1 (SMESG000015397.1) HSP 1 Score: 83.5741 bits (205), Expect = 3.083e-18 Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 226 ETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKK 480 +T+++ LRR+ T PWGF L+GG D G P+ + K+ IA +GL+P D ++ I S TH Q K EI+R+ NEI FT+ + Sbjct: 3 QTLIIDLRRSDTSIPWGFRLEGGVDMGAPIRIMKIVSGSIAEYAGLQPADYVLLINRSTTERMTHEQAKMEIIRSANEITFTISR 87
BLAST of PDZ domain-containing protein vs. Planmine SMEST
Match: SMESG000029617.1 (SMESG000029617.1) HSP 1 Score: 58.9214 bits (141), Expect = 1.283e-9 Identity = 35/137 (25.55%), Postives = 60/137 (43.80%), Query Frame = 1 Query: 238 LSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEPGDVIIQIGNSQLTGKTHAQIKAEILRAGNEIDFTVKKRDFNVAAYNSTMNQINEPMHQMSPNSPALEPRAEIIEEHVWKHGGPKFKNVQPKSY 648 +L + PWGF +QGG D P+ + ++T + +A SGL+ GD I +I N H + + I+ +GN ++ + + VA N P S N ++ PR + + H K+ P + Sbjct: 6 FNLSKAGLHNPWGFRIQGGRDFNRPLIISRITCDSVADNSGLKCGDRITKINNFDTGFICHNEAQQVIIESGNTLNLEITRDPLPVAE-NLKQTPFTVPKFPSSTNCNSIAPRTGLAGDIQLSHSNFDLKHRAPCCH 141 The following BLAST results are available for this feature:
BLAST of PDZ domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of PDZ domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of PDZ domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of PDZ domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of PDZ domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of PDZ domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of PDZ domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of PDZ domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of PDZ domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of PDZ domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 4
BLAST of PDZ domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of PDZ domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 3
BLAST of PDZ domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of PDZ domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30030352 ID=SMED30030352|Name=PDZ domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=989bpback to top protein sequence of SMED30030352-orf-1 >SMED30030352-orf-1 ID=SMED30030352-orf-1|Name=SMED30030352-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=191bp MNIETIVLSLRRTVTDKPWGFVLQGGSDQGLPVFVHKVTRNGIAHKSGLEback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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