SMED30030309

Overview
NameSMED30030309
Smed IDSMED30030309
Length (bp)1625
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30030309 (SMED30030309) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30030309 (SMED30030309) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30030309 (SMED30030309) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30030309 (SMED30030309) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30030309

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 15

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
intestinal phagocyteSMED30030309h1SMcG0000220 Contig5177GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
intestinal phagocyteSMED30030309h1SMcG0001838 Contig5177GPL15192PMID:23079596
Forsthoefel et al., 2012		FACS sorted cell population asexual adult cDNA to DNA expression microarray evidence
protonephridiaSMED30030309h1SMcG0001838 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30030309h1SMcG0001838 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30030309h1SMcG0001838 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30030309h1SMcG0001838 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30030309h1SMcG0001838 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30030309h1SMcG0001838 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymal cellSMED30030309h1SMcG0001838 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
non-ciliated neuronSMED30030309h1SMcG0001838 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30030309h1SMcG0001838 dd_Smed_v6_1061_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30030309h1SMcG0001838 dd_Smed_v6_1061_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30030309h1SMcG0001843 dd_Smed_v6_1061_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cholinergic neuronSMED30030309h1SMcG0001843 dd_Smed_v6_1061_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30030309h1SMcG0001838 dd_Smed_v4_1061_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of SMED30030309 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0
Identity = 389/400 (97.25%), Postives = 394/400 (98.50%), Query Frame = 1 
Query:  274 TIKVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVDGKSAKPDMNKVACPNCHTLYPQAEIETHIEVCIENEH 1473
            +  VSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSV GKSAKPDMN VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    7 SFSVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVGGKSAKPDMNTVACPNCHTLYPQAEIETHIEVCIENEH 406
[Close]
BLAST of SMED30030309 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 645.966 bits (1665), Expect = 0.000e+0
Identity = 389/406 (95.81%), Postives = 394/406 (97.04%), Query Frame = 1 
Query:  274 TIKVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNE------ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVDGKSAKPDMNKVACPNCHTLYPQAEIETHIEVCIENEH 1473
            +  VSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNE      ERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSV GKSAKPDMN VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    7 SFSVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNELSESENERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVGGKSAKPDMNTVACPNCHTLYPQAEIETHIEVCIENEH 412
[Close]
BLAST of SMED30030309 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 615.15 bits (1585), Expect = 0.000e+0
Identity = 374/400 (93.50%), Postives = 379/400 (94.75%), Query Frame = 1 
Query:  274 TIKVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVDGKSAKPDMNKVACPNCHTLYPQAEIETHIEVCIENEH 1473
            +  VSKHAENLGQEIQSLNQNLEKKEQI               KTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSV GKSAKPDMN VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    7 SFSVSKHAENLGQEIQSLNQNLEKKEQI---------------KTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVGGKSAKPDMNTVACPNCHTLYPQAEIETHIEVCIENEH 391
[Close]
BLAST of SMED30030309 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 364/400 (91.00%), Postives = 370/400 (92.50%), Query Frame = 1 
Query:  274 TIKVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVDGKSAKPDMNKVACPNCHTLYPQAEIETHIEVCIENEH 1473
            +  VSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTK                        +IESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSV GKSAKPDMN VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    7 SFSVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTK------------------------KIESKNNKLKEMEMESKKQLKKIEELQKEKNNLRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVGGKSAKPDMNTVACPNCHTLYPQAEIETHIEVCIENEH 382
[Close]
BLAST of SMED30030309 vs. Planmine SMEST
Match: SMESG000075212.1 (SMESG000075212.1)

HSP 1 Score: 565.459 bits (1456), Expect = 0.000e+0
Identity = 340/400 (85.00%), Postives = 347/400 (86.75%), Query Frame = 1 
Query:  274 TIKVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSARSVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKSKDTKTKAQVKELRNIIEDLKGEVEAKCDEIESKNNKLKEMEMESXXXXXXXXXXXXXXXXXRVKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVDGKSAKPDMNKVACPNCHTLYPQAEIETHIEVCIENEH 1473
            +  VSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDS +SVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTK           IE+L+ E          KNN                         LRVKNEIIEETVKNQAKEAEKIVQEKKTELD+KQEAMETMK KI+EKN+KIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSV GKSAKPDMN VACPNCHTLYPQAEIETHIEVCIENEH
Sbjct:    7 SFSVSKHAENLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRSLQKNPGNITSANVLSRSDSGKSVNEERYKSESQFLNEIYKRSGKKFDNFKECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKYAAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTK-----------IEELQKE----------KNN-------------------------LRVKNEIIEETVKNQAKEAEKIVQEKKTELDRKQEAMETMKIKIDEKNLKIKEYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQPKSVGGKSAKPDMNTVACPNCHTLYPQAEIETHIEVCIENEH 360
The following BLAST results are available for this feature:
BLAST of SMED30030309 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030309 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000075212.10.000e+097.25SMESG000075212.1[more]
SMESG000075212.10.000e+095.81SMESG000075212.1[more]
SMESG000075212.10.000e+093.50SMESG000075212.1[more]
SMESG000075212.10.000e+091.00SMESG000075212.1[more]
SMESG000075212.10.000e+085.00SMESG000075212.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30030309 ID=SMED30030309|Name=SMED30030309|organism=Schmidtea mediterranea sexual|type=transcript|length=1625bp
ATGGAATGCTTTCTTAAACAACAAATAAGTGGTTTTTAAAATTGGATCCT
AATTTTAAAAACCACTTATTTGTTGTATAAGAAAGCATTCCATTGATCTA
TTTTTTAATTCCCCATTTATATATAATATTATTTATTTCATTAAAAAACC
ATGAGTGATTCAGATGAACAGGAGGCTGTTATTCAAAAATTTAAAAAAGA
AAAAAAAACTTTAGAGAAAAAATATAAAGATCGCATTTCTGAATTGGAAG
AGTCGATTGAGGAAAAAGATGATACAATTAAGGTGTCTAAGCACGCAGAA
AATCTGGGTCAGGAAATTCAAAGTTTAAATCAAAATCTTGAAAAAAAGGA
GCAGATTATTGATTCGAAAGATAATGTAATTCAAAAACAGAAAAATGAAC
TTAAGACATGCGAGGATAAAATAAAAAAACTGGATGAAACGATTCGATCG
TTGCAAAAAAATCCTGGTAACATAACAAGCGCGAATGTCCTATCACGATC
AGATTCAGCGAGATCTGTTAATGAGGAAAGATATAAATCAGAATCCCAAT
TCTTGAATGAGATTTACAAACGAAGTGGAAAGAAATTCGACAATTTTAAA
GAGTGCATTGATTATATTAAAAATCCAATCGACTCTTCGAGTCAAATTAG
GGGAGATCTCAATAGAGAGTGGTGTTTTGCAAGAAGTGGTAATAATGAAA
TGGTTAAAGAACTTAGAAAAGAAATTGAAATTTTGGAGGATGAAAAATAT
GCGGCAGAAACGAAAGCAAAAAGCGAAACGAAGAAACTAAAGAAAGAATT
GAAAGATAAGAATGAAGAAAATCTGGAGTTGATTGAAGAAGTTTCAGAAT
TGCGAAAGAAATCAAAAGATACCAAGACTAAGGCTCAAGTAAAAGAATTG
CGAAATATAATAGAAGATTTAAAAGGCGAGGTAGAGGCCAAATGCGATGA
AATAGAATCCAAAAACAATAAATTGAAAGAAATGGAGATGGAAAGTAAAA
AGCAGCTCAAGAAAATTGAAGAATTACAAAAGGAAAAAAATAATTTAAGA
GTAAAAAATGAAATAATTGAAGAAACTGTAAAAAATCAAGCGAAAGAAGC
TGAGAAAATTGTTCAAGAGAAAAAAACTGAATTAGATAAAAAACAGGAGG
CCATGGAAACTATGAAAACTAAGATAAATGAAAAAAATGTGAAAATAAAG
GAATATGAAAATGAAATCCAAGACCATAAAGAGAAGTACCAAGAACTAGA
GACAAGAGCGAACAATCAAAATAGACATCATGAGGGAAAGATTAAGATAT
TGGAAGATCAAATACATGAATTGCAAGTAAGAAATATTGAAAATCAACCA
AAATCAGTAGATGGAAAATCAGCAAAACCTGACATGAATAAGGTTGCCTG
TCCTAATTGTCATACATTATATCCACAAGCGGAAATTGAGACCCACATTG
AAGTCTGTATTGAAAATGAACACTAGTCTAATATGTGTGTTTACGCGTGC
GTGCACTTGAGAAATTTGTTTAATTGAGTAATAAATAATACGGAAAGTTC
CAAATTGTTTTGTAGTTTTTTTAAATCTCATAATAATATTTAATATGTAA
ACTGGTAAGTTATGAAACTGAAAAT
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protein sequence of SMED30030309-orf-1

>SMED30030309-orf-1 ID=SMED30030309-orf-1|Name=SMED30030309-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=442bp
MSDSDEQEAVIQKFKKEKKTLEKKYKDRISELEESIEEKDDTIKVSKHAE
NLGQEIQSLNQNLEKKEQIIDSKDNVIQKQKNELKTCEDKIKKLDETIRS
LQKNPGNITSANVLSRSDSARSVNEERYKSESQFLNEIYKRSGKKFDNFK
ECIDYIKNPIDSSSQIRGDLNREWCFARSGNNEMVKELRKEIEILEDEKY
AAETKAKSETKKLKKELKDKNEENLELIEEVSELRKKSKDTKTKAQVKEL
RNIIEDLKGEVEAKCDEIESKNNKLKEMEMESKKQLKKIEELQKEKNNLR
VKNEIIEETVKNQAKEAEKIVQEKKTELDKKQEAMETMKTKINEKNVKIK
EYENEIQDHKEKYQELETRANNQNRHHEGKIKILEDQIHELQVRNIENQP
KSVDGKSAKPDMNKVACPNCHTLYPQAEIETHIEVCIENEH*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000026gut
PLANA:0000034epidermis
PLANA:0000070intestinal phagocyte
PLANA:0000099neuron
PLANA:0000463cholinergic neuron
Vocabulary: INTERPRO
TermDefinition
IPR005798Cyt_b/b6_C
Vocabulary: cellular component
TermDefinition
GO:0016020membrane
Vocabulary: molecular function
TermDefinition
GO:0016491oxidoreductase activity
GO:0009055electron carrier activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 49..104
NoneNo IPR availableCOILSCoilCoilcoord: 437..441
NoneNo IPR availableCOILSCoilCoilcoord: 247..394
NoneNo IPR availableCOILSCoilCoilcoord: 178..237
NoneNo IPR availableCOILSCoilCoilcoord: 4..42