SMED30030183

Overview
NameSMED30030183
Smed IDSMED30030183
Length (bp)1438
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30030183 (SMED30030183) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30030183 (SMED30030183) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30030183 (SMED30030183) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30030183 (SMED30030183) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30030183

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 6

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30030183SMESG000020128.1 dd_Smed_v4_12353_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30030183SMESG000020128.1 dd_Smed_v4_12353_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30030183SMESG000020128.1 dd_Smed_v4_12353_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30030183SMESG000020128.1 dd_Smed_v4_12353_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30030183SMESG000020128.1 dd_Smed_v4_12353_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30030183SMESG000020128.1 dd_Smed_v4_12353_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30030183 vs. Planmine SMEST
Match: SMESG000080881.1 (SMESG000080881.1)

HSP 1 Score: 345.51 bits (885), Expect = 2.087e-168
Identity = 174/263 (66.16%), Postives = 214/263 (81.37%), Query Frame = 2 
Query:   35 KDRVNLQGQIQCHSYKGYGHMARSCPKNSNKFQRPILKKIRFQNNELQSDNVAFVQSDDFNERIENEMKQIRSN*KRLDRLMCKFESDEEFDNYMVYDLQLEWSRTESKVKSAKDDLESEKVTMIIMVIKNLMASRALKTSKIMRSLNELSQMSLSVRKLKSVIELCAD--NENSKDRNEIENMMKIFGKAFLENAGFNFVFIDIVDRNNNSMIFVHCEAGDYVRDLKEKLKENNRKRIIELKFKNRCLNYDEFLIDCGFCTG 817
            +DRVNLQG+IQCHS +GYGHMARSCP+N+ +FQ+PILKKIRFQ+++ Q+DNVAFVQ D+FN RIE+E+KQ+    +RLDRL+CKFESDEE DN+M+Y+ Q E S TE K    KDDL+SEK  MII  I  L+ SRA +TSKIM SL ELSQMSLSV++LK+VIELCAD    N KDR+EI NMMKIFGKAF EN   +F+FID+VD++ NS+I + CE GDYV+DLKE+LKENN ++II++KFKNR L  DEFLIDCGF  G
Sbjct: 1790 RDRVNLQGRIQCHSCRGYGHMARSCPRNNERFQKPILKKIRFQSDKSQADNVAFVQPDNFNNRIEDEVKQMS---RRLDRLICKFESDEETDNHMMYESQSEASETELKKMMIKDDLQSEKAIMIISRINKLIESRAAETSKIMTSLLELSQMSLSVQRLKNVIELCADYYEVNLKDRDEISNMMKIFGKAFRENKWLDFIFIDVVDKSRNSVICIRCEIGDYVKDLKERLKENNGRQIIKVKFKNRYLEDDEFLIDCGFIPG 2049

HSP 2 Score: 231.876 bits (590), Expect = 2.087e-168
Identity = 110/147 (74.83%), Postives = 130/147 (88.44%), Query Frame = 1 
Query: 1000 YIYHRSKYRERLKCLLRRFGKELRETRVELKSFLVALDYKVDGKTEFVDEHWCTKDRKLRKSAAEKLVNNGIII-MFKGEELDHDEYLYDCGFKPQELDEN*YLDADGRAGYFVNCVVAIKEQNVDSVNNLENSNTDIEEDNVNGIE 1437
            Y+Y +S+Y E+LKCL+RRFG+ELRETR+ELK F++A+DY+  GKTE+++EHWCTK +KLRK AA ++  +GII+ MFK EELD DEYLYDCGFKPQELDEN YLDADGRAGY VNCVVAIKEQ VDSV+N ENSNTDIEEDNVNGIE
Sbjct: 2109 YLYDKSRYGEKLKCLMRRFGRELRETRMELKPFIIAIDYEDWGKTEYIEEHWCTKVQKLRKRAANQIGKDGIIVLMFKDEELDDDEYLYDCGFKPQELDENGYLDADGRAGYLVNCVVAIKEQKVDSVDNSENSNTDIEEDNVNGIE 2255

HSP 3 Score: 57.3806 bits (137), Expect = 2.087e-168
Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:  807 FVPGNKNKLQIACMISENEVEKSDSQEIIKEFRDALRKWNEI*IFEMLKVIEKTELD 977
            F+PGNKNKLQ+ACM  E   +KSDSQEII E       W+ + I E LK+I+K EL+
Sbjct: 2046 FIPGNKNKLQVACMSKEEVAKKSDSQEIIGE-------WDGVKITEKLKLIDKIELE 2095
[Close]
BLAST of SMED30030183 vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1)

HSP 1 Score: 275.018 bits (702), Expect = 7.593e-151
Identity = 156/275 (56.73%), Postives = 196/275 (71.27%), Query Frame = 2 
Query:   11 SINVTVTIKDRVNLQGQIQCHSYKGYGHMARSCPKNSNKFQRPIL----KKIRFQNNELQSDNVAFVQSDDFNERIENEMKQIRSN*KRLDRLMCKFESDEEFDNYMVYDLQLEWSRTESKVKSAKDDLESEKVTMIIMVIKNLMASRALKTSKIMRSLNELSQMSLSVRKLKSVIELCAD--NENSKDRNEIENMMKIFGKAFLENAGFNFVFIDIVDRNNNSMIFVHCEAGDYVRDLKEKLKENNRKRIIELKFKNRCLNYDEFLIDCGFCTG 817
            S N   T   R+N    IQC++    GH++R+C   S            +KIRFQ+++ Q+DNVAFVQ D+FN RIE+E+KQ+    + LDRL+CKFESDEE DN+M+Y+ Q E S TE K    KDDL+SEK  MI+  I  L+ SRA +TSKIM SL ELSQ+SLSV++LKSVIELCAD    N KDR+EI NMMKIFGKAF EN   +F+FID+VD + NS+I + CE GDYV+DLKE+LKENN ++II++KFKNR L  DEFLIDCGF  G
Sbjct:  335 SFNKMSTNSQRIN--DNIQCYNCGKRGHVSRNCFARSRSPSTSPSPQRDRKIRFQSDKSQADNVAFVQPDNFNNRIEDEVKQMS---RHLDRLICKFESDEETDNHMMYESQSEASDTEFKKIMIKDDLQSEKAIMIMSRINKLIESRATETSKIMTSLLELSQISLSVQRLKSVIELCADYYEVNLKDRDEISNMMKIFGKAFRENKWLDFIFIDVVDESRNSVICILCEIGDYVKDLKERLKENNGRQIIKVKFKNRYLEDDEFLIDCGFIPG 604

HSP 2 Score: 228.024 bits (580), Expect = 7.593e-151
Identity = 107/147 (72.79%), Postives = 128/147 (87.07%), Query Frame = 1 
Query: 1000 YIYHRSKYRERLKCLLRRFGKELRETRVELKSFLVALDYKVDGKTEFVDEHWCTKDRKLRKSAAEKLVNNGIII-MFKGEELDHDEYLYDCGFKPQELDEN*YLDADGRAGYFVNCVVAIKEQNVDSVNNLENSNTDIEEDNVNGIE 1437
            Y+Y +S+Y E+LKCL+RRFG+ELRETR+ELK F++A+DY+  GKTE+++EHWCTK +KLRK AA ++  +GII+ MFK EELD DEYLYDCGFKPQELDEN YLD DGRAGY VNCVVAIKEQ VD V+N ENSNTDIEEDN+NGIE
Sbjct:  671 YLYDKSRYGEKLKCLMRRFGRELRETRMELKPFIIAIDYEDWGKTEYIEEHWCTKVQKLRKRAANQIGKDGIIVLMFKDEELDDDEYLYDCGFKPQELDENGYLDGDGRAGYLVNCVVAIKEQKVDPVDNSENSNTDIEEDNINGIE 817

HSP 3 Score: 73.559 bits (179), Expect = 7.593e-151
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 3 
Query:  807 FVPGNKNKLQIACMISENEVEKSDSQEIIKEFRDALRKWNEI*IFEMLKVIEKTELD 977
            F+PGNKNKLQ+ACMI E   EKSDSQ+II + R+AL +W+ + I E LK+I+K ELD
Sbjct:  601 FIPGNKNKLQVACMIREEVAEKSDSQKIIGDLREALNEWDGVKITEKLKLIDKIELD 657
[Close]
BLAST of SMED30030183 vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1)

HSP 1 Score: 275.018 bits (702), Expect = 8.387e-151
Identity = 156/275 (56.73%), Postives = 196/275 (71.27%), Query Frame = 2 
Query:   11 SINVTVTIKDRVNLQGQIQCHSYKGYGHMARSCPKNSNKFQRPIL----KKIRFQNNELQSDNVAFVQSDDFNERIENEMKQIRSN*KRLDRLMCKFESDEEFDNYMVYDLQLEWSRTESKVKSAKDDLESEKVTMIIMVIKNLMASRALKTSKIMRSLNELSQMSLSVRKLKSVIELCAD--NENSKDRNEIENMMKIFGKAFLENAGFNFVFIDIVDRNNNSMIFVHCEAGDYVRDLKEKLKENNRKRIIELKFKNRCLNYDEFLIDCGFCTG 817
            S N   T   R+N    IQC++    GH++R+C   S            +KIRFQ+++ Q+DNVAFVQ D+FN RIE+E+KQ+    + LDRL+CKFESDEE DN+M+Y+ Q E S TE K    KDDL+SEK  MI+  I  L+ SRA +TSKIM SL ELSQ+SLSV++LKSVIELCAD    N KDR+EI NMMKIFGKAF EN   +F+FID+VD + NS+I + CE GDYV+DLKE+LKENN ++II++KFKNR L  DEFLIDCGF  G
Sbjct:  335 SFNKMSTNSQRIN--DNIQCYNCGKRGHVSRNCFARSRSPSTSPSPQRDRKIRFQSDKSQADNVAFVQPDNFNNRIEDEVKQMS---RHLDRLICKFESDEETDNHMMYESQSEASDTEFKKIMIKDDLQSEKAIMIMSRINKLIESRATETSKIMTSLLELSQISLSVQRLKSVIELCADYYEVNLKDRDEISNMMKIFGKAFRENKWLDFIFIDVVDESRNSVICILCEIGDYVKDLKERLKENNGRQIIKVKFKNRYLEDDEFLIDCGFIPG 604

HSP 2 Score: 227.639 bits (579), Expect = 8.387e-151
Identity = 107/147 (72.79%), Postives = 128/147 (87.07%), Query Frame = 1 
Query: 1000 YIYHRSKYRERLKCLLRRFGKELRETRVELKSFLVALDYKVDGKTEFVDEHWCTKDRKLRKSAAEKLVNNGIII-MFKGEELDHDEYLYDCGFKPQELDEN*YLDADGRAGYFVNCVVAIKEQNVDSVNNLENSNTDIEEDNVNGIE 1437
            Y+Y +S+Y E+LKCL+RRFG+ELRETR+ELK F++A+DY+  GKTE+++EHWCTK +KLRK AA ++  +GII+ MFK EELD DEYLYDCGFKPQELDEN YLD DGRAGY VNCVVAIKEQ VD V+N ENSNTDIEEDN+NGIE
Sbjct:  671 YLYDKSRYGEKLKCLMRRFGRELRETRMELKPFIIAIDYEDWGKTEYIEEHWCTKVQKLRKRAANQIGKDGIIVLMFKDEELDDDEYLYDCGFKPQELDENGYLDGDGRAGYLVNCVVAIKEQKVDPVDNSENSNTDIEEDNINGIE 817

HSP 3 Score: 73.559 bits (179), Expect = 8.387e-151
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 3 
Query:  807 FVPGNKNKLQIACMISENEVEKSDSQEIIKEFRDALRKWNEI*IFEMLKVIEKTELD 977
            F+PGNKNKLQ+ACMI E   EKSDSQ+II + R+AL +W+ + I E LK+I+K ELD
Sbjct:  601 FIPGNKNKLQVACMIREEVAEKSDSQKIIGDLREALNEWDGVKITEKLKLIDKIELD 657
[Close]
BLAST of SMED30030183 vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1)

HSP 1 Score: 274.633 bits (701), Expect = 9.904e-151
Identity = 156/275 (56.73%), Postives = 196/275 (71.27%), Query Frame = 2 
Query:   11 SINVTVTIKDRVNLQGQIQCHSYKGYGHMARSCPKNSNKFQRPIL----KKIRFQNNELQSDNVAFVQSDDFNERIENEMKQIRSN*KRLDRLMCKFESDEEFDNYMVYDLQLEWSRTESKVKSAKDDLESEKVTMIIMVIKNLMASRALKTSKIMRSLNELSQMSLSVRKLKSVIELCAD--NENSKDRNEIENMMKIFGKAFLENAGFNFVFIDIVDRNNNSMIFVHCEAGDYVRDLKEKLKENNRKRIIELKFKNRCLNYDEFLIDCGFCTG 817
            S N   T   R+N    IQC++    GH++R+C   S            +KIRFQ+++ Q+DNVAFVQ D+FN RIE+E+KQ+    + LDRL+CKFESDEE DN+M+Y+ Q E S TE K    KDDL+SEK  MI+  I  L+ SRA +TSKIM SL ELSQ+SLSV++LKSVIELCAD    N KDR+EI NMMKIFGKAF EN   +F+FID+VD + NS+I + CE GDYV+DLKE+LKENN ++II++KFKNR L  DEFLIDCGF  G
Sbjct:  335 SFNKMSTNSQRIN--DNIQCYNCGKRGHVSRNCFARSRSPSTSPSPQRDRKIRFQSDKSQADNVAFVQPDNFNNRIEDEVKQMS---RHLDRLICKFESDEETDNHMMYESQSEASDTEFKKIMIKDDLQSEKAIMIMSRINKLIESRATETSKIMTSLLELSQISLSVQRLKSVIELCADYYEVNLKDRDEISNMMKIFGKAFRENKWLDFIFIDVVDESRNSVICILCEIGDYVKDLKERLKENNGRQIIKVKFKNRYLEDDEFLIDCGFIPG 604

HSP 2 Score: 227.639 bits (579), Expect = 9.904e-151
Identity = 107/147 (72.79%), Postives = 128/147 (87.07%), Query Frame = 1 
Query: 1000 YIYHRSKYRERLKCLLRRFGKELRETRVELKSFLVALDYKVDGKTEFVDEHWCTKDRKLRKSAAEKLVNNGIII-MFKGEELDHDEYLYDCGFKPQELDEN*YLDADGRAGYFVNCVVAIKEQNVDSVNNLENSNTDIEEDNVNGIE 1437
            Y+Y +S+Y E+LKCL+RRFG+ELRETR+ELK F++A+DY+  GKTE+++EHWCTK +KLRK AA ++  +GII+ MFK EELD DEYLYDCGFKPQELDEN YLD DGRAGY VNCVVAIKEQ VD V+N ENSNTDIEEDN+NGIE
Sbjct:  671 YLYDKSRYGEKLKCLMRRFGRELRETRMELKPFIIAIDYEDWGKTEYIEEHWCTKVQKLRKRAANQIGKDGIIVLMFKDEELDDDEYLYDCGFKPQELDENGYLDGDGRAGYLVNCVVAIKEQKVDPVDNSENSNTDIEEDNINGIE 817

HSP 3 Score: 73.559 bits (179), Expect = 9.904e-151
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 3 
Query:  807 FVPGNKNKLQIACMISENEVEKSDSQEIIKEFRDALRKWNEI*IFEMLKVIEKTELD 977
            F+PGNKNKLQ+ACMI E   EKSDSQ+II + R+AL +W+ + I E LK+I+K ELD
Sbjct:  601 FIPGNKNKLQVACMIREEVAEKSDSQKIIGDLREALNEWDGVKITEKLKLIDKIELD 657
[Close]
BLAST of SMED30030183 vs. Planmine SMEST
Match: SMESG000056661.1 (SMESG000056661.1)

HSP 1 Score: 312.383 bits (799), Expect = 1.478e-141
Identity = 162/260 (62.31%), Postives = 199/260 (76.54%), Query Frame = 2 
Query:   38 DRVNLQGQIQCHSYKGYGHMARSCPKNSNKFQRPILKKIRFQNNELQSDNVAFVQSDDFNERIENEMKQIRSN*KRLDRLMCKFESDEEFDNYMVYDLQLEWSRTESKVKSAKDDLESEKVTMIIMVIKNLMASRALKTSKIMRSLNELSQMSLSVRKLKSVIELCADNENSKDRNEIENMMKIFGKAFLENAGFNFVFIDIVDRNNNSMIFVHCEAGDYVRDLKEKLKENNRKRIIELKFKNRCLNYDEFLIDCGFCTG 817
            DRVNLQG IQCHS +GYGHMARSCP+N+ +FQ+PILKKIRFQ+++ Q DNVAFVQ D+ N RIE+E+KQ+    +RLDRL+CKFESDEE DN+M+Y+LQ E S TE K    KDD +SEK  MI+  I  L+ SRA +TSKIM SL ELSQMSLSV++LK             +R+EI NMMKIFGKAF EN   +F+FID+VD + NS+I + CE GDYV+DLKE+LKENN ++II++KFKNR L  DEFLIDCGF  G
Sbjct:  304 DRVNLQGGIQCHSCRGYGHMARSCPRNNERFQKPILKKIRFQSDKSQVDNVAFVQPDNSNNRIEDEVKQMS---RRLDRLICKFESDEEKDNHMMYELQSEASDTELKNMMIKDDQQSEKEIMIMSRINKLIESRAAETSKIMTSLLELSQMSLSVQRLK-------------NRDEITNMMKIFGKAFRENKWLDFIFIDVVDESRNSVICIRCEIGDYVKDLKERLKENNGRQIIKVKFKNRYLEDDEFLIDCGFIPG 547

HSP 2 Score: 160.999 bits (406), Expect = 1.478e-141
Identity = 81/146 (55.48%), Postives = 98/146 (67.12%), Query Frame = 1 
Query: 1000 YIYHRSKYRERLKCLLRRFGKELRETRVELKSFLVALDYKVDGKTEFVDEHWCTKDRKLRKSAAEKLVNNGIIIMFKGEELDHDEYLYDCGFKPQELDEN*YLDADGRAGYFVNCVVAIKEQNVDSVNNLENSNTDIEEDNVNGIE 1437
            Y+Y +S+Y E+LKCL+RRFG+ELRET +ELK F++A+DY+  GK E+++EHWCTK +K                                 F PQELDEN YLDADGR GY VNCVVA+KEQ +D V NLENSNTDIEEDNVNGIE
Sbjct:  614 YLYDKSRYGEKLKCLMRRFGRELRETGMELKPFIIAIDYEDWGKAEYIEEHWCTKVQK---------------------------------FNPQELDENGYLDADGRVGYLVNCVVALKEQKIDLVYNLENSNTDIEEDNVNGIE 726

HSP 3 Score: 72.4034 bits (176), Expect = 1.478e-141
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 3 
Query:  807 FVPGNKNKLQIACMISENEVEKSDSQEIIKEFRDALRKWNEI*IFEMLKVIEKTELD 977
            F+PGNKNKLQ+ACMI E  +EKSDSQEI ++ RDAL +W+ + I E L++++K EL+
Sbjct:  544 FIPGNKNKLQVACMIREEVMEKSDSQEITRDLRDALSEWDGVKITEKLELLDKIELE 600
The following BLAST results are available for this feature:
BLAST of SMED30030183 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030183 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000080881.12.087e-16866.16SMESG000080881.1[more]
SMESG000057446.17.593e-15156.73SMESG000057446.1[more]
SMESG000057446.18.387e-15156.73SMESG000057446.1[more]
SMESG000057446.19.904e-15156.73SMESG000057446.1[more]
SMESG000056661.11.478e-14162.31SMESG000056661.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30030183 ID=SMED30030183|Name=SMED30030183|organism=Schmidtea mediterranea sexual|type=transcript|length=1438bp
GATCAAGATCTCCATCAACGTCACCGTCACCATAAAAGATAGAGTAAATC
TCCAAGGTCAAATTCAATGTCACTCTTACAAGGGCTATGGACACATGGCA
AGATCATGTCCAAAGAACAGTAACAAATTCCAGAGGCCGATATTAAAGAA
AATTAGATTTCAGAATAATGAGTTGCAATCGGATAATGTAGCTTTTGTGC
AGTCAGATGATTTTAACGAAAGAATCGAAAATGAGATGAAACAGATTAGA
TCGAATTAAAAACGATTAGATCGATTAATGTGCAAATTTGAATCAGATGA
GGAATTTGATAATTATATGGTGTATGATTTACAGTTAGAATGGTCAAGAA
CAGAGTCAAAAGTAAAGTCAGCTAAAGATGATTTAGAAAGTGAAAAAGTG
ACAATGATTATCATGGTAATTAAAAATTTAATGGCATCGAGAGCATTAAA
AACCTCAAAAATAATGAGGTCGCTAAATGAATTGAGTCAAATGTCACTGA
GTGTAAGGAAATTGAAAAGTGTGATTGAGTTATGTGCTGATAATGAAAAT
TCAAAGGATAGAAATGAAATCGAAAATATGATGAAAATATTTGGAAAAGC
GTTCTTAGAAAACGCTGGGTTTAATTTTGTTTTTATTGATATTGTCGATA
GAAATAATAATAGTATGATCTTTGTTCATTGTGAAGCGGGAGATTATGTA
AGAGATTTAAAAGAGAAACTAAAGGAAAATAATAGAAAACGAATAATAGA
ATTAAAATTTAAAAACAGATGTTTGAATTATGATGAATTTCTAATAGATT
GTGGTTTTTGTACCGGGAAATAAAAATAAATTGCAGATAGCATGTATGAT
TAGTGAAAATGAAGTAGAAAAGAGTGATTCACAAGAAATAATAAAGGAGT
TTAGAGATGCTTTACGTAAGTGGAATGAAATTTAAATTTTTGAAATGTTA
AAAGTAATTGAAAAAACGGAATTAGACGAATCCAGCAAATTAGAAATTAT
ATATATATCATAGATCGAAATATAGAGAAAGGTTAAAATGTTTATTACGA
AGATTTGGTAAAGAGCTTAGAGAAACTAGAGTTGAACTAAAGTCATTTTT
AGTAGCGTTAGATTATAAAGTAGATGGAAAAACAGAGTTTGTAGACGAGC
ATTGGTGTACAAAGGATCGGAAACTAAGAAAAAGTGCTGCTGAAAAATTG
GTAAATAATGGAATTATTATAATGTTCAAAGGTGAGGAGCTTGATCATGA
CGAATATTTATATGATTGTGGATTTAAGCCACAGGAATTAGATGAAAACT
GATACCTAGATGCCGATGGAAGGGCAGGGTATTTTGTAAATTGTGTAGTA
GCAATAAAGGAACAGAATGTAGATTCAGTGAATAATTTGGAGAATTCAAA
TACAGATATAGAGGAAGATAACGTAAACGGAATAGAAG
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protein sequence of SMED30030183-orf-1

>SMED30030183-orf-1 ID=SMED30030183-orf-1|Name=SMED30030183-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=182bp
MCKFESDEEFDNYMVYDLQLEWSRTESKVKSAKDDLESEKVTMIIMVIKN
LMASRALKTSKIMRSLNELSQMSLSVRKLKSVIELCADNENSKDRNEIEN
MMKIFGKAFLENAGFNFVFIDIVDRNNNSMIFVHCEAGDYVRDLKEKLKE
NNRKRIIELKFKNRCLNYDEFLIDCGFCTGK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: molecular function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding