RNA binding protein fox-1 homolog 1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30030133 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 15Note: Hover over icons to view figure legend
Homology
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Human
Match: RBFOX1 (RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222]) HSP 1 Score: 132.494 bits (332), Expect = 5.190e-35 Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D P+ + ++K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 207
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Human
Match: RBFOX1 (RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222]) HSP 1 Score: 132.494 bits (332), Expect = 5.669e-35 Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D P+ + ++K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 97 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 206
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Human
Match: RBFOX2 (RNA binding fox-1 homolog 2 [Source:HGNC Symbol;Acc:HGNC:9906]) HSP 1 Score: 129.028 bits (323), Expect = 4.461e-34 Identity = 57/91 (62.64%), Postives = 75/91 (82.42%), Query Frame = 1 Query: 523 DSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKV 795 +SK + KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK+ Sbjct: 85 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 175
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Human
Match: RBFOX2 (RNA binding fox-1 homolog 2 [Source:HGNC Symbol;Acc:HGNC:9906]) HSP 1 Score: 129.028 bits (323), Expect = 4.461e-34 Identity = 57/91 (62.64%), Postives = 75/91 (82.42%), Query Frame = 1 Query: 523 DSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKV 795 +SK + KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK+ Sbjct: 85 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKM 175
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Human
Match: RBFOX3 (RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Acc:HGNC:27097]) HSP 1 Score: 130.568 bits (327), Expect = 7.511e-34 Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 1 Query: 514 SDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KK N +N Sbjct: 45 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTN 144
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Celegans
Match: asd-1 (RNA-binding protein ASD-1 [Source:UniProtKB/TrEMBL;Acc:G5EEW7]) HSP 1 Score: 119.398 bits (298), Expect = 1.241e-29 Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKK 789 +R+H+SNIPF+YRE D+ + + G ++DVEIIFNERGSKGFGFVT NPDDA +AR + NG +EGRR+E+N+AT R+ KK Sbjct: 75 RRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKK 157
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Celegans
Match: fox-1 (Sex determination protein fox-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10572]) HSP 1 Score: 118.627 bits (296), Expect = 1.395e-29 Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKK-KVENGVSNVRYPL 828 KR+H+SNIPFR+R+ D++ + + +G + DVEIIFNERGSKGFGFVT P DA +AR +L+G +EGR+IE+N ATAR+ +KK K G+ + PL Sbjct: 94 KRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKKVKPTGGILDQMNPL 190
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Celegans
Match: asd-1 (RNA-binding protein ASD-1 [Source:UniProtKB/TrEMBL;Acc:G5EEW7]) HSP 1 Score: 119.398 bits (298), Expect = 1.910e-29 Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKK 789 +R+H+SNIPF+YRE D+ + + G ++DVEIIFNERGSKGFGFVT NPDDA +AR + NG +EGRR+E+N+AT R+ KK Sbjct: 100 RRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKK 182
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Celegans
Match: asd-1 (RNA-binding protein ASD-1 [Source:UniProtKB/TrEMBL;Acc:G5EEW7]) HSP 1 Score: 119.398 bits (298), Expect = 1.910e-29 Identity = 50/83 (60.24%), Postives = 66/83 (79.52%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKK 789 +R+H+SNIPF+YRE D+ + + G ++DVEIIFNERGSKGFGFVT NPDDA +AR + NG +EGRR+E+N+AT R+ KK Sbjct: 100 RRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQRVHNKK 182
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Celegans
Match: fox-1 (Sex determination protein fox-1 [Source:UniProtKB/Swiss-Prot;Acc:Q10572]) HSP 1 Score: 119.013 bits (297), Expect = 1.962e-29 Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKK-KVENGVSNVRYPL 828 KR+H+SNIPFR+R+ D++ + + +G + DVEIIFNERGSKGFGFVT P DA +AR +L+G +EGR+IE+N ATAR+ +KK K G+ + PL Sbjct: 153 KRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHSKKVKPTGGILDQMNPL 249
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0473371) HSP 1 Score: 129.798 bits (325), Expect = 4.140e-32 Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 520 IDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNVRYPLSQQAMLPTNNHNVWPL 876 +D+K KR+H+SNIPFR+R+ D+R + +G +LDVEIIFNERGSKGFGFVTFAN +DA +AR+ L+G VEGR+IE+N ATAR+ KK V NV + LP WP Sbjct: 370 LDAKSQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKKV--TAVPNVCVQWPEGYRLPV---AAWPF 483
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0332985) HSP 1 Score: 128.642 bits (322), Expect = 5.642e-32 Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 1 Query: 520 IDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKK 789 +D+K KR+H+SNIPFR+R+ D+R + +G +LDVEIIFNERGSKGFGFVTFAN +DA +AR+ L+G VEGR+IE+N ATAR+ KK Sbjct: 211 LDAKSQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKK 300
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0113419) HSP 1 Score: 129.413 bits (324), Expect = 7.619e-32 Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 1 Query: 520 IDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKK 789 +D+K KR+H+SNIPFR+R+ D+R + +G +LDVEIIFNERGSKGFGFVTFAN +DA +AR+ L+G VEGR+IE+N ATAR+ KK Sbjct: 370 LDAKSQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKK 459
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0305096) HSP 1 Score: 129.413 bits (324), Expect = 9.165e-32 Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 1 Query: 520 IDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKK 789 +D+K KR+H+SNIPFR+R+ D+R + +G +LDVEIIFNERGSKGFGFVTFAN +DA +AR+ L+G VEGR+IE+N ATAR+ KK Sbjct: 436 LDAKSQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKK 525
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Fly
Match: Rbfox1 (gene:FBgn0052062 transcript:FBtr0305095) HSP 1 Score: 129.413 bits (324), Expect = 9.289e-32 Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 1 Query: 520 IDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKK 789 +D+K KR+H+SNIPFR+R+ D+R + +G +LDVEIIFNERGSKGFGFVTFAN +DA +AR+ L+G VEGR+IE+N ATAR+ KK Sbjct: 436 LDAKSQPKRLHVSNIPFRFRDPDLRAMFGQFGTILDVEIIFNERGSKGFGFVTFANSNDAERARERLHGTVVEGRKIEVNNATARVQTKK 525
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Zebrafish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46]) HSP 1 Score: 130.568 bits (327), Expect = 3.538e-35 Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 1 Query: 487 DLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNVR 819 D+ Q + S+ K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N + Sbjct: 90 DVTQTDVLISESTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVVNPYTNSK 200
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Zebrafish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1]) HSP 1 Score: 131.724 bits (330), Expect = 2.499e-34 Identity = 61/100 (61.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 514 SDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 103 SDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 202
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Zebrafish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46]) HSP 1 Score: 130.954 bits (328), Expect = 3.324e-34 Identity = 62/109 (56.88%), Postives = 80/109 (73.39%), Query Frame = 1 Query: 487 DLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D+ Q + S+ K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 73 DVTQTDVLISESTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVVNPYTN 181
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Zebrafish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1]) HSP 1 Score: 132.109 bits (331), Expect = 4.337e-34 Identity = 61/100 (61.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 514 SDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 144 SDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 243
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Zebrafish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1]) HSP 1 Score: 131.724 bits (330), Expect = 6.823e-34 Identity = 61/100 (61.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 514 SDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 150 SDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 249
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Xenopus
Match: lsm12 (LSM12 homolog [Source:Xenbase;Acc:XB-GENE-5780031]) HSP 1 Score: 134.806 bits (338), Expect = 6.998e-35 Identity = 61/110 (55.45%), Postives = 81/110 (73.64%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D Q P+ + ++K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 87 TDGQQQTQPSENTENKTQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTLNPYTN 196
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Xenopus
Match: lsm12 (LSM12 homolog [Source:Xenbase;Acc:XB-GENE-5780031]) HSP 1 Score: 134.42 bits (337), Expect = 7.281e-35 Identity = 61/110 (55.45%), Postives = 81/110 (73.64%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D Q P+ + ++K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 78 TDGQQQTQPSENTENKTQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTLNPYTN 187
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Xenopus
Match: lsm12 (LSM12 homolog [Source:Xenbase;Acc:XB-GENE-5780031]) HSP 1 Score: 134.42 bits (337), Expect = 7.409e-35 Identity = 61/110 (55.45%), Postives = 81/110 (73.64%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D Q P+ + ++K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 100 TDGQQQTQPSENTENKTQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTLNPYTN 209
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Xenopus
Match: yaf2 (YY1 associated factor 2 [Source:Xenbase;Acc:XB-GENE-949941]) HSP 1 Score: 125.561 bits (314), Expect = 3.563e-32 Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = 1 Query: 529 KISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KK N +N Sbjct: 94 KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSMDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPVNPYTN 188
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Xenopus
Match: yaf2 (YY1 associated factor 2 [Source:Xenbase;Acc:XB-GENE-949941]) HSP 1 Score: 125.946 bits (315), Expect = 7.456e-32 Identity = 58/95 (61.05%), Postives = 73/95 (76.84%), Query Frame = 1 Query: 529 KISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KK N +N Sbjct: 139 KQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSMDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPVNPYTN 233
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Mouse
Match: Rbfox1 (RNA binding protein, fox-1 homolog (C. elegans) 1 [Source:MGI Symbol;Acc:MGI:1926224]) HSP 1 Score: 133.65 bits (335), Expect = 2.594e-35 Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D P+ + +SK KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 97 TDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 206
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Mouse
Match: Rbfox1 (RNA binding protein, fox-1 homolog (C. elegans) 1 [Source:MGI Symbol;Acc:MGI:1926224]) HSP 1 Score: 133.265 bits (334), Expect = 1.325e-34 Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D P+ + +SK KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 77 TDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 186
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Mouse
Match: Rbfox1 (RNA binding protein, fox-1 homolog (C. elegans) 1 [Source:MGI Symbol;Acc:MGI:1926224]) HSP 1 Score: 133.65 bits (335), Expect = 3.150e-34 Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D P+ + +SK KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 117 TDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 226
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Mouse
Match: Rbfox1 (RNA binding protein, fox-1 homolog (C. elegans) 1 [Source:MGI Symbol;Acc:MGI:1926224]) HSP 1 Score: 133.265 bits (334), Expect = 3.383e-34 Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D P+ + +SK KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 97 TDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 206
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Mouse
Match: Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3 [Source:MGI Symbol;Acc:MGI:106368]) HSP 1 Score: 130.954 bits (328), Expect = 3.796e-34 Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 1 Query: 493 NQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 NQ + P SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KK N +N Sbjct: 84 NQQLHP-SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYAN 189
BLAST of RNA binding protein fox-1 homolog 1 vs. UniProt/SwissProt
Match: sp|Q9JJ43|RFOX1_MOUSE (RNA binding protein fox-1 homolog 1 OS=Mus musculus OX=10090 GN=Rbfox1 PE=1 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 2.696e-33 Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D P+ + +SK KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 97 TDGQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 206
BLAST of RNA binding protein fox-1 homolog 1 vs. UniProt/SwissProt
Match: sp|A6NFN3|RFOX3_HUMAN (RNA binding protein fox-1 homolog 3 OS=Homo sapiens OX=9606 GN=RBFOX3 PE=2 SV=4) HSP 1 Score: 130.568 bits (327), Expect = 4.453e-33 Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 1 Query: 514 SDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KK N +N Sbjct: 90 SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTN 189
BLAST of RNA binding protein fox-1 homolog 1 vs. UniProt/SwissProt
Match: sp|Q8BIF2|RFOX3_MOUSE (RNA binding protein fox-1 homolog 3 OS=Mus musculus OX=10090 GN=Rbfox3 PE=1 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 4.840e-33 Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 1 Query: 493 NQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 NQ + P SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KK N +N Sbjct: 84 NQQLHP-SDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYAN 189
BLAST of RNA binding protein fox-1 homolog 1 vs. UniProt/SwissProt
Match: sp|Q95KI0|RFOX1_MACFA (RNA binding protein fox-1 homolog 1 OS=Macaca fascicularis OX=9541 GN=RBFOX1 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.606e-33 Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D P+ + ++K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 100 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 209
BLAST of RNA binding protein fox-1 homolog 1 vs. UniProt/SwissProt
Match: sp|Q5NVN8|RFOX1_PONAB (RNA binding protein fox-1 homolog 1 OS=Pongo abelii OX=9601 GN=RBFOX1 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.646e-33 Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 484 VDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 D P+ + ++K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 98 TDGQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTN 207
BLAST of RNA binding protein fox-1 homolog 1 vs. TrEMBL
Match: A0A564ZE62 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS14780 PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.424e-35 Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVE 798 KR+H+SNIPFRYRE D+RQLL P+G +LDVEIIFNERGSKGFGFVTFA P++A KAR+ LNG VEGR+IEIN ATAR+M KKK E Sbjct: 198 KRLHVSNIPFRYREADLRQLLGPFGTILDVEIIFNERGSKGFGFVTFATPEEADKARESLNGTIVEGRKIEINNATARVMTKKKSE 283
BLAST of RNA binding protein fox-1 homolog 1 vs. TrEMBL
Match: A0A564ZEY3 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=WMSIL1_LOCUS14780 PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.769e-35 Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVE 798 KR+H+SNIPFRYRE D+RQLL P+G +LDVEIIFNERGSKGFGFVTFA P++A KAR+ LNG VEGR+IEIN ATAR+M KKK E Sbjct: 210 KRLHVSNIPFRYREADLRQLLGPFGTILDVEIIFNERGSKGFGFVTFATPEEADKARESLNGTIVEGRKIEINNATARVMTKKKSE 295
BLAST of RNA binding protein fox-1 homolog 1 vs. TrEMBL
Match: W6UMG1 (Fox-1 C OS=Echinococcus granulosus OX=6210 GN=EGR_05801 PE=4 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.465e-35 Identity = 64/86 (74.42%), Postives = 76/86 (88.37%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVE 798 KR+H+SNIPFR+RE D+RQLL P+G +LDVEIIFNERGSKGFGFVTFA P++A KAR++LNG VEGR+IEIN ATAR+M KKK E Sbjct: 60 KRLHVSNIPFRFREADLRQLLGPFGTILDVEIIFNERGSKGFGFVTFATPEEADKARENLNGTVVEGRKIEINNATARVMTKKKSE 145
BLAST of RNA binding protein fox-1 homolog 1 vs. TrEMBL
Match: A0A158QBS1 (RRM domain-containing protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS401 PE=4 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 5.943e-35 Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVE 798 KR+H+SNIPFRYRE D+RQLL P+G +LDVEIIFNERGSKGFGFVTFA P++A KAR+ LNG VEGR+IEIN ATAR+M KKK E Sbjct: 292 KRLHVSNIPFRYREADLRQLLGPFGTILDVEIIFNERGSKGFGFVTFATPEEADKARESLNGTIVEGRKIEINNATARVMTKKKSE 377
BLAST of RNA binding protein fox-1 homolog 1 vs. TrEMBL
Match: A0A3P6QUU1 (RRM domain-containing protein OS=Taenia asiatica OX=60517 GN=TASK_LOCUS9634 PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 8.053e-35 Identity = 64/86 (74.42%), Postives = 76/86 (88.37%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVE 798 KR+H+SNIPFR+RE D+RQLL P+G +LDVEIIFNERGSKGFGFVTFA P++A KAR++LNG VEGR+IEIN ATAR+M KKK E Sbjct: 69 KRLHVSNIPFRFREADLRQLLGPFGTILDVEIIFNERGSKGFGFVTFATPEEADKARENLNGTVVEGRKIEINNATARVMTKKKSE 154
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Cavefish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1]) HSP 1 Score: 134.806 bits (338), Expect = 3.390e-35 Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 1 Query: 457 MDKAKSLNIVDLNQDV-LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNV 816 + +A + D +Q + L SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +NV Sbjct: 130 IPQADEVAQTDASQQLQLQPSDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTNV 250
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Cavefish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1]) HSP 1 Score: 132.88 bits (333), Expect = 9.054e-35 Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 457 MDKAKSLNIVDLNQDV-LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 + +A + D +Q + L SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 88 IPQADEVAQTDASQQLQLQPSDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 207
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Cavefish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1]) HSP 1 Score: 133.65 bits (335), Expect = 1.210e-34 Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 457 MDKAKSLNIVDLNQDV-LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 + +A + D +Q + L SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 125 IPQADEVAQTDASQQLQLQPSDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 244
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Cavefish
Match: rbfox3a (RNA binding fox-1 homolog 3a [Source:ZFIN;Acc:ZDB-GENE-111213-1]) HSP 1 Score: 133.65 bits (335), Expect = 1.223e-34 Identity = 65/120 (54.17%), Postives = 85/120 (70.83%), Query Frame = 1 Query: 457 MDKAKSLNIVDLNQDV-LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 + +A + D +Q + L SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 125 IPQADEVAQTDASQQLQLQPSDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSADADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 244
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Cavefish
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46]) HSP 1 Score: 132.494 bits (332), Expect = 1.735e-34 Identity = 62/106 (58.49%), Postives = 78/106 (73.58%), Query Frame = 1 Query: 496 QDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 Q L +SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KK N +N Sbjct: 124 QLTLQSSDSPEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKAANPYTN 229
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Sea Lamprey
Match: rbfox3b (RNA binding fox-1 homolog 3b [Source:ZFIN;Acc:ZDB-GENE-091204-46]) HSP 1 Score: 61.2326 bits (147), Expect = 3.382e-11 Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 Query: 658 KGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 +GFGFVTF N DA +AR+ L+G VEGR+IE+N ATAR+M KK N +N Sbjct: 2 QGFGFVTFENSADADRAREKLHGTMVEGRKIEVNNATARVMTNKKAVNPYAN 53
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923]) HSP 1 Score: 55.0694 bits (131), Expect = 1.783e-8 Identity = 25/74 (33.78%), Postives = 51/74 (68.92%), Query Frame = 1 Query: 544 RMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFN-ERG-SKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEIN 759 R+++ ++ F E + + +P+G++ +++++ + E G SKGFGF+TF++ D A KA + LNG ++ GR +++N Sbjct: 273 RLYVGSLHFNITEAMLMGIFEPFGKIDNIQLMMDPETGRSKGFGFITFSSADCAKKALEQLNGFELAGRPMKVN 346
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Sea Lamprey
Match: rbmx (RNA binding motif protein X-linked [Source:NCBI gene;Acc:321860]) HSP 1 Score: 53.9138 bits (128), Expect = 3.087e-8 Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 Query: 580 ETDVRQLLKPYGQLLDVEIIFNERG---SKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVAT 768 E + + YG++ +V +I +R S+GF FVTFANPDDA A D+NGK ++GR I++ AT Sbjct: 20 ENALETIFSKYGRVAEV-LIMKDRETNRSRGFAFVTFANPDDAKGAERDMNGKPLDGRNIKVEQAT 84
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Sea Lamprey
Match: rbmx (RNA binding motif protein X-linked [Source:NCBI gene;Acc:321860]) HSP 1 Score: 52.373 bits (124), Expect = 1.186e-7 Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1 Query: 610 YGQLLDVEIIFNERG---SKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNVRYPLSQQA----MLPTNNH 861 YG++ DV ++ +R S+GF FVTFANP+DA +A D NGK +EGR + ++ AT K E+ RY S+ +PT N Sbjct: 30 YGRVADV-LLMKDRETNLSRGFAFVTFANPEDAKEAERDANGKVLEGRAMRVDQAT-----KPSFESFPGGGRYGFSRGPPRVCGVPTTNR 114
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Sea Lamprey
Match: RBM39 (RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923]) HSP 1 Score: 51.2174 bits (121), Expect = 3.356e-7 Identity = 23/79 (29.11%), Postives = 50/79 (63.29%), Query Frame = 1 Query: 544 RMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERG--SKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATAR 774 R+++ ++ F E ++ + +P+G++ + +++ + S+G+GFVTFA+ + A KA + LNG ++ GR +++ T R Sbjct: 260 RLYVGSLHFNITEDMLKGIFEPFGKIENCQLMMDSDTGRSRGYGFVTFADAECARKALEQLNGFELAGRPMKVGHVTER 338
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Yeast
Match: MRD1 (Essential conserved small ribosomal subunit (40s) synthesis factor; component of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains and binds to the pre-rRNA at two sites within the 18S region [Source:SGD;Acc:S000006316]) HSP 1 Score: 47.3654 bits (111), Expect = 3.809e-6 Identity = 27/81 (33.33%), Postives = 43/81 (53.09%), Query Frame = 1 Query: 511 NSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFN-ERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRI 750 N+ S S ++ + N+PF DV +L +GQL V + ++ ++GF FV F P +A A D L+G + GRR+ Sbjct: 753 NTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRL 833 HSP 2 Score: 46.2098 bits (108), Expect = 7.933e-6 Identity = 24/73 (32.88%), Postives = 42/73 (57.53%), Query Frame = 1 Query: 544 RMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERG--SKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEI 756 R+ + NI + +E D R+L P+G+L +V + + R SKGF +V F + +A A +L+ + +GR + I Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHI 418
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Yeast
Match: PUB1 (Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; implicated in regulation of translation; carries Q/N-rich domain at C- terminus, identified as candidate prion; human homolog Tia1 is critical for normal synaptic plasticity; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004961]) HSP 1 Score: 45.8246 bits (107), Expect = 9.010e-6 Identity = 22/64 (34.38%), Postives = 37/64 (57.81%), Query Frame = 1 Query: 589 VRQLLKPYGQLLDVEIIFNER--GSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATAR 774 +R K + L ++++ + S+G+GFV+F + DDA A D + G+D+ GR + IN A R Sbjct: 178 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Nematostella
Match: EDO44890 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RUE7]) HSP 1 Score: 97.8265 bits (242), Expect = 3.728e-25 Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEI 756 KR+H++NIPFR+R+ D+RQ+ +G + DVEII+NERGSKGFGFVTF +A KAR+ LNG V+GR++E+ Sbjct: 10 KRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKGFGFVTFNTAAEANKAREKLNGTIVDGRKVEV 81
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Nematostella
Match: EDO29715 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T2V2]) HSP 1 Score: 60.077 bits (144), Expect = 1.153e-11 Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 1 Query: 553 ISNIPFRYRETDVRQLLKPYGQLLDVEII---FNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEIN 759 + ++PF E D+R + YG + V+II F R SKGFGFV N +A KA D+LNG VEGR I +N Sbjct: 5 VGSLPFSIEEADLRGFFEEYGAVDSVKIISDKFTGR-SKGFGFVEMPNDAEAQKAIDELNGGTVEGRTIVVN 75
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Nematostella
Match: EDO35153 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SMA7]) HSP 1 Score: 55.8398 bits (133), Expect = 6.632e-9 Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 544 RMHISNIPFRYRETDVRQLLKPYG-QLLDVEIIFNERG---------SKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEI 756 +++ N+PF+ + +++ + + + DV I+ R S+GFGFVTFANP+DA A + LNGK+V+GR ++I Sbjct: 13 KVYAGNLPFKLTQDELKAVFEAESLTVTDVVIMKEPRNEFYQQQEPRSRGFGFVTFANPEDAQTAVNSLNGKEVQGRTLKI 93
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Nematostella
Match: EDO27598 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T8T6]) HSP 1 Score: 54.6842 bits (130), Expect = 7.344e-9 Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1 Query: 544 RMHISNIPFRYRETDVRQLLKPYG-QLLDVEIIFNERG---------SKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEI 756 +++ N+PF+ + +++ + + + DV I+ R S+GFGFVTFANP+DA A LNGK+V+GR ++I Sbjct: 8 KVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 88
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Nematostella
Match: EDO39290 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAJ5]) HSP 1 Score: 53.9138 bits (128), Expect = 1.734e-8 Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 1 Query: 544 RMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATAR 774 R+ + +P RE+DV + L+ YG++ D+ + +G+GFV F + DA A DLNG+D+ G R+ + + R Sbjct: 3 RIFLGRLPRDVRESDVEKFLRGYGKIRDISL------KRGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKGR 73
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826]) HSP 1 Score: 134.035 bits (336), Expect = 8.567e-34 Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 505 LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 L +SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 318 LQHSDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 420
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826]) HSP 1 Score: 132.88 bits (333), Expect = 9.009e-34 Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 505 LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 L +SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 236 LQHSDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 338
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826]) HSP 1 Score: 134.035 bits (336), Expect = 9.825e-34 Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 505 LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 L +SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 318 LQHSDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 420
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826]) HSP 1 Score: 133.65 bits (335), Expect = 9.986e-34 Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 505 LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 L +SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 299 LQHSDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 401
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Medaka
Match: rbfox3b (RNA binding fox-1 homolog 3 [Source:NCBI gene;Acc:101159826]) HSP 1 Score: 132.88 bits (333), Expect = 1.132e-33 Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 505 LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSN 813 L +SD K KR+H+SNIPFR+R+ D+RQ+ +G++LDVEIIFNERGSKGFGFVTF DA +AR+ LNG VEGR+IE+N ATAR+M KKV N +N Sbjct: 253 LQHSDSSEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFETSTDADRAREKLNGTIVEGRKIEVNNATARVMTNKKVANPYTN 355
BLAST of RNA binding protein fox-1 homolog 1 vs. Planmine SMEST
Match: SMESG000019470.1 (SMESG000019470.1) HSP 1 Score: 494.967 bits (1273), Expect = 1.888e-176 Identity = 271/272 (99.63%), Postives = 272/272 (100.00%), Query Frame = 1 Query: 457 MDKAKSLNIVDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNVRYPLSQQAMLPTNNHNVWPLSSSVPLVTNSLCIGAQNTMHXXXXXXXXXXXXXXXXXXXXXXXXXXGLNQNIFNNFQLSLSNRLLAVNALQMGTDYSNLAYLQNIQALANGCHNQPNIHLFSQIPVSYNSLTKSNPLVHHPNLISTQRFAPY 1272 MDKAKSLNIVDLNQDVLPNSDIDSKISSKRMHISNIPFRYRE+DVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNVRYPLSQQAMLPTNNHNVWPLSSSVPLVTNSLCIGAQNTMHSNNLILNSNLCNPSNLLMPLNSLSTSGLNQNIFNNFQLSLSNRLLAVNALQMGTDYSNLAYLQNIQALANGCHNQPNIHLFSQIPVSYNSLTKSNPLVHHPNLISTQRFAPY Sbjct: 1 MDKAKSLNIVDLNQDVLPNSDIDSKISSKRMHISNIPFRYRESDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNVRYPLSQQAMLPTNNHNVWPLSSSVPLVTNSLCIGAQNTMHSNNLILNSNLCNPSNLLMPLNSLSTSGLNQNIFNNFQLSLSNRLLAVNALQMGTDYSNLAYLQNIQALANGCHNQPNIHLFSQIPVSYNSLTKSNPLVHHPNLISTQRFAPY 272
BLAST of RNA binding protein fox-1 homolog 1 vs. Planmine SMEST
Match: SMESG000019470.1 (SMESG000019470.1) HSP 1 Score: 489.189 bits (1258), Expect = 4.089e-174 Identity = 271/277 (97.83%), Postives = 272/277 (98.19%), Query Frame = 1 Query: 457 MDKAKSLNIVDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSK-----GFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNVRYPLSQQAMLPTNNHNVWPLSSSVPLVTNSLCIGAQNTMHXXXXXXXXXXXXXXXXXXXXXXXXXXGLNQNIFNNFQLSLSNRLLAVNALQMGTDYSNLAYLQNIQALANGCHNQPNIHLFSQIPVSYNSLTKSNPLVHHPNLISTQRFAPY 1272 MDKAKSLNIVDLNQDVLPNSDIDSKISSKRMHISNIPFRYRE+DVRQLLKPYGQLLDVEIIFNERGSK GFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNVRYPLSQQAMLPTNNHNVWPLSSSVPLVTNSLCIGAQNTMHSNNLILNSNLCNPSNLLMPLNSLSTSGLNQNIFNNFQLSLSNRLLAVNALQMGTDYSNLAYLQNIQALANGCHNQPNIHLFSQIPVSYNSLTKSNPLVHHPNLISTQRFAPY Sbjct: 1 MDKAKSLNIVDLNQDVLPNSDIDSKISSKRMHISNIPFRYRESDVRQLLKPYGQLLDVEIIFNERGSKNFSGTGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVENGVSNVRYPLSQQAMLPTNNHNVWPLSSSVPLVTNSLCIGAQNTMHSNNLILNSNLCNPSNLLMPLNSLSTSGLNQNIFNNFQLSLSNRLLAVNALQMGTDYSNLAYLQNIQALANGCHNQPNIHLFSQIPVSYNSLTKSNPLVHHPNLISTQRFAPY 277
BLAST of RNA binding protein fox-1 homolog 1 vs. Planmine SMEST
Match: SMESG000033763.1 (SMESG000033763.1) HSP 1 Score: 140.584 bits (353), Expect = 2.162e-37 Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVATARMMAKKKVE 798 KR+H+SNIPFR+RE D+R LL P+G ++DVEIIFNERGSKGFGFVTFAN DA +AR+ LNG VEGR+IE+N ATAR+M KKK E Sbjct: 102 KRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIEVNHATARIMTKKKAE 187
BLAST of RNA binding protein fox-1 homolog 1 vs. Planmine SMEST
Match: SMESG000033763.1 (SMESG000033763.1) HSP 1 Score: 119.013 bits (297), Expect = 1.650e-28 Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 1 Query: 541 KRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNERGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIE 753 KR+H+SNIPFR+RE D+R LL P+G ++DVEIIFNERGSKGFGFVTFAN DA +AR+ LNG VEGR+IE Sbjct: 97 KRLHVSNIPFRFREADLRALLGPFGTIIDVEIIFNERGSKGFGFVTFANALDAERARESLNGFVVEGRKIE 167
BLAST of RNA binding protein fox-1 homolog 1 vs. Planmine SMEST
Match: SMESG000022369.1 (SMESG000022369.1) HSP 1 Score: 52.373 bits (124), Expect = 9.493e-8 Identity = 28/89 (31.46%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 505 LPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKPYGQLLDVEIIFNE--RGSKGFGFVTFANPDDAAKARDDLNGKDVEGRRIEINVA 765 + D D+ + SK + I N+ E D+ ++ YG++ DV ++ ++ + S+GFGFV F N DDA A++ ++G V+G++I ++ + Sbjct: 6 IDKEDRDNPLPSKCLGIFNLSLETTEKDLHEMFFRYGEIEDVSLVIDKVTKRSRGFGFVYFKNIDDAEIAKEKVHGTIVQGKQIRVDYS 94 The following BLAST results are available for this feature:
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 2
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of RNA binding protein fox-1 homolog 1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30030133 ID=SMED30030133|Name=RNA binding protein fox-1 homolog 1|organism=Schmidtea mediterranea sexual|type=transcript|length=1366bpback to top protein sequence of SMED30030133-orf-1 >SMED30030133-orf-1 ID=SMED30030133-orf-1|Name=SMED30030133-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=273bp MDKAKSLNIVDLNQDVLPNSDIDSKISSKRMHISNIPFRYRETDVRQLLKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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