SMED30030062

Overview
NameSMED30030062
Smed IDSMED30030062
Length (bp)6137
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30030062 (SMED30030062) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30030062 (SMED30030062) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30030062 (SMED30030062) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30030062 (SMED30030062) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30030062

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30030062SMESG000049230.1 dd_Smed_v4_3251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30030062SMESG000049230.1 dd_Smed_v4_3251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30030062SMESG000049230.1 dd_Smed_v4_3251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30030062SMESG000049230.1 dd_Smed_v4_3251_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30030062SMESG000049230.1 Contig48862newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30030062SMESG000049230.1 Contig48862uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
parenchymal cellSMED30030062SMESG000049230.1 dd_Smed_v6_3251_0dd_Smed_v6PMID:29674432
Plass et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30030062 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.003485:27640..33779 -30089
Homology
[Close]
BLAST of SMED30030062 vs. Planmine SMEST
Match: SMESG000049230.1 (SMESG000049230.1)

HSP 1 Score: 3212.17 bits (8327), Expect = 0.000e+0
Identity = 1992/2034 (97.94%), Postives = 2006/2034 (98.62%), Query Frame = 2 
Query:    8 MKALRSSIKNNLNSKRPLKVNDKSNEIYXXXXXXXXXXXXXXXSKLANSNFRXXXXXXXXXXXXXXXCSELVTCDDPNEFLENHSEIKKSAGSNDKIKNRFNFTKMTSRRKVSDKCVNVYDDDNGDFMNINHPNLVMREEFDSCXXXXXXXXXXXXXXXLLPYPSNKNNMPSESKIKTMNKKEIEQKVKLQQTQLNILMPSKETFKEKKSNNVKNIGITKGCXXXXXXXXXXXXMNTSVYPVGNLNNFQNDQLKDENLIKTKENSSRDLRSPSITKRFKTYTKQLKTQVQQRKAVSKQTLEKSKALKPEKEPCDNTITDKLXXXXXXXXXXXXXXXXXXXXXNTDNEEIKDDQISERSLHNEIHNIHSKDNVQGQRSSEKNKKLFNFNSMKKILTKEMKSSNVNQNDXXXXXXXXXXXXXXXXLSKNEDNLIFDAEEIYXXXXXXXXXXXXHGKTCEEIPTDEIHVSPSKVDLQNSGVLPXXXXXXXXXLDSASPNLKKRFQNLQKKTTSFKSKLKNHVKNIQHQSNVKERYTPSCNDEVYDEDMEKEIHIENKQSMPKTINQEKSLQLFSKLQIKDAKSGKDNLEKVSLKLSPQNLIDTEEIYDDDENIVFLENFENNKKXXXXXXXXXXXXXXXXXXXXXXXXKMSTTNSQKDIRXXXXXXXXXXXXLPSKNRKPSFCLDSISPSITKNIQYLQNKTTNFKSKLKKQVKTIQHQPKVTKKCISSSNDEVYDEDMGQDISIENTQSMQATEEIYDDDDDNNVLHENREHYDKPDHEEVYDVDYNQINDDQATNTMSLNDCHSKQSNNELRDPSPIKKRNKSFSSTVHFLEKRTASIKSNITNQVKQMPSLSNIIKERLPKTNDAVKHQCKIDKENALIGNGGVFDGDTEKENQKKKIQNFHECDDIYDDDENVPSISSTEHIAVHSQEEVYEXXXXXXXXXXXXXXHISETSSPKDFKNNFLPSKVKKSPFHCNPGPSLLKTTSKCNLNIKDKIKNLTILPKADKSKSPSTNEELYDDDENMDDIAFNNDQSYEVISSQGTYXXXXXXXXXXXXXXFEQASSTSSDDKNNCHNNCQLSSISPLIQTKDAQLKVTLKYQFQNIKSKTKKPILLEKMNKDQENAKSNDDIYXXXXXXXXXXXXXXTKQSIKTTLSYDTKNIFPNSEVHENVSNDNLTTKDSCXXXXXXXXXXXXXXLATFKTNFKDQVTSFRSDSNLKKEFKNDESSNLHEEVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKSETISQYDFNDNXXXXXXXXXXXXXXXXXF-FDLNPISHLLDKNIFDLEQKTSKIKLMLKGHVKQLKHLSKTKKENSPLVNNEIYDVDDDAERGLCDSGMTSINNVSDLLKNFEDLSQENTDHSSQGSLQTPKLISKKIVKIPSEIIKGKKNIIDRNLKVIKEKTRIMAQNIKTQVQTFKESTRTNKTTEEGNREILENRSKEXXXXXXXXXXXXXLNESLDLAVISEQDVYDDDNNDIKNEISETPDEDSLASSQMEIESHKTIQNTSMPLITSKRLTFIQKKKDSLKTNIQLQVHNIXXXXXXXXXXXXLEKIKNDNFDRNEEVYDDDENSERLRDKEDNASGFHNNESAEIYDEDETQLEIPRIQKPEYQNRKQFQKISSKNVEDKSLHXXXXXXXXXXXXXXXXIDIKYIKNQFNSFSSKMHSKLKRKMIKLNQKSKLYFQKNERSEISKLPYSFDDXXXXXXXXXXXXXXXXXXYSAEINLAETRSYYDRKLEILLNLKRKIHKQMHTLERVKNNKGNTEGTSMGNTTKSNDIKTDVFDEIYDEDSGNEDFYTNPLQNNENQKHMNTSNLKDKKNDKEFIKTTELDITKGIVKSNVKNNIDKGVSRNDQDNSIQSENIQLTRVSESRNEPIKDKLTEIENIRNVEGISKTGFSFSRSDHQCQDKYVKDLLNKNMSLKKERNQTEISQNETIYPTKQSESGLTTNNSEIRPQSPLNPNQFIGNIESQSPPYSIKEISPKESLNIQERIKMHENLVNLQ 6106
            MKALRSSIKNNLNSK PLKVNDKSNEIYDEDEDGDDGDQ DKDSKLANSN RKNENYNYAKLANNANCSELVTCDDPNEFLENHSEIKKSAGSNDKIKNRFNF+KMTSRRKVSDKCVNVYDDDNGDFMNINHPNLVMREEFDSCNPQNINNNNNDNKVNLLPYPSNKNNMPSESKIKTMNKKEIEQ+VKLQQTQLNILMPSKETFKEKKSNNVKNIGITKGCVENDEVYDEDDNMNTSVYPVGNLNNFQNDQLKDENLIKTKENSSRDLRSPSITKRFKTYTKQLKTQVQQRKAVSKQTLEKSKALKPEKEPCDNTITDKLDEIYDEEYEVQETEEVYDDDENTDN+EIKDDQISERSLHNEIHNIHSKDN+QGQRSSEKNKKLFNFNSMKKILTKEMKSSNVNQNDNEPKIENEEIPNINKELSKNEDNLIFDAEEIYVDDS+VNENDN HGKT EEIPTDEIHVSPSKVDLQNSGVLPKKEEKSSSSLDSASP LKKRFQNLQKKTTSFKSKLKNHVKNIQHQSNVKERYTPSCNDEVYDEDMEKEIHIENKQSMPKTINQEKSLQLFSKLQIKDAK GKDNLEKVSLKLSPQNLIDTEEIYDDDENIVFLENFENNKKDGHDEVYDDDDDDENENNAHDNTDKMSTTNSQKDIRS NSNENSQNQQLPSKNRKPSFCLDSISPSITKNIQYLQNKTTNFKSKLKKQVKTIQHQPKVTKKCI SSNDEVYDEDMGQDISIENTQSMQ TEEIYDDDDDNNVLHEN EHYDKPDHEEVYDVDYNQIND QATNTMSL DCHSKQSNNELRDPSPIKKRNKSFSSTVHFLEKRTASIKSNITNQVKQM SLSNIIKERLPKTNDAVK QCKIDKENALIGNGGVFDGDTEKENQKKKIQNFHECDDIYDDDENVPSI STEHIAVHSQEEVYEDDDSGNNNNNDSINHISE SSPKDFKNNFLPSKVKKSPFHCNPGPSLLKTTSKCNLNIKDKIKNLTILPKADKSKSPSTNEELYDDDENMDDIAFNNDQSYEVISSQGTYDKDSNDIKSKNSKS EQASSTSSDDKNNCHNNCQLSSISPLIQTK+AQLKVTLKYQFQNIKSKTKKPILLEKMNKDQ+NAKSNDDIYDEDEKDESNENNENTKQSIKTTLSYDTKNIFPNSEVHENVSNDNLTTKDSCKKEKKSFNFNFEKKLATFKTNFKDQVTSFRSDSNLKKEFKNDESSNLHEEVYDDDKSNEIEEIKKSEICENEDIYDDDENVNNDNNKEEQKSETIS YDFNDNKLSSD KSTLGSLTTKKF FDLNPISHLLDKNIFDLEQKTSK+KLMLKGHVKQLKHLSKTKKENSPLVNNEIYDVDDDAERGLCDSGMTSINNVSDLLKNFEDLSQENTDHSSQGSLQTP LISKKIVKIPSEIIKGKKNIIDRNLKVIKEKTRIMAQNIKTQVQTFKESTRTNKTTEEGNREILENRSKENDDIYDDDENCNDLNESLDLAVISEQDVYDDDNNDIKNEISETPD+DSLASSQMEIESHKTIQNTSMPLITSKRLTFIQKKKDSLKTNIQLQVHNIKRFTKNKKNKRTLEKIKNDNFDRNEEVYDDDENSERLRD+EDNASG HNNESAEIYDEDETQLEIPRIQKPEYQNRKQFQKISSKNVEDKSLHEDSEDEEFDNSESDHSIDIKYIKNQFNSFSSKMHSKLKRKMIKLNQKSKLYFQKNERSEISKLP+SFDDEAVETESESSIEEPETRSYSAEINLAETRSYYDRKLEILLNLKRKIHKQMHTLERVKNNKG TEGTSMGNTTKSNDIKTDVFDEIYDEDSGNEDFYTNPLQNNENQKHMNTSNLKDKKNDKEFIKTTELDITKGIVKSNVKN+IDKGVSRNDQDNSIQSENIQLTRVSESRNEPIKDKLTEIENIRNVEGISKTGFSFSRSDHQCQDKYVKDLLNKN+SLKKERN TEISQN+TIYPTKQSESGLTTNNSEIRPQSPLNPNQFIGN ESQS PYSIKEISPKESLNIQERIKMHENL NLQ
Sbjct:    1 MKALRSSIKNNLNSKIPLKVNDKSNEIYDEDEDGDDGDQNDKDSKLANSNSRKNENYNYAKLANNANCSELVTCDDPNEFLENHSEIKKSAGSNDKIKNRFNFSKMTSRRKVSDKCVNVYDDDNGDFMNINHPNLVMREEFDSCNPQNINNNNNDNKVNLLPYPSNKNNMPSESKIKTMNKKEIEQQVKLQQTQLNILMPSKETFKEKKSNNVKNIGITKGCVENDEVYDEDDNMNTSVYPVGNLNNFQNDQLKDENLIKTKENSSRDLRSPSITKRFKTYTKQLKTQVQQRKAVSKQTLEKSKALKPEKEPCDNTITDKLDEIYDEEYEVQETEEVYDDDENTDNKEIKDDQISERSLHNEIHNIHSKDNIQGQRSSEKNKKLFNFNSMKKILTKEMKSSNVNQNDNEPKIENEEIPNINKELSKNEDNLIFDAEEIYVDDSSVNENDNGHGKTREEIPTDEIHVSPSKVDLQNSGVLPKKEEKSSSSLDSASPTLKKRFQNLQKKTTSFKSKLKNHVKNIQHQSNVKERYTPSCNDEVYDEDMEKEIHIENKQSMPKTINQEKSLQLFSKLQIKDAKPGKDNLEKVSLKLSPQNLIDTEEIYDDDENIVFLENFENNKKDGHDEVYDDDDDDENENNAHDNTDKMSTTNSQKDIRSNNSNENSQNQQLPSKNRKPSFCLDSISPSITKNIQYLQNKTTNFKSKLKKQVKTIQHQPKVTKKCIRSSNDEVYDEDMGQDISIENTQSMQETEEIYDDDDDNNVLHENLEHYDKPDHEEVYDVDYNQINDAQATNTMSLKDCHSKQSNNELRDPSPIKKRNKSFSSTVHFLEKRTASIKSNITNQVKQMQSLSNIIKERLPKTNDAVKDQCKIDKENALIGNGGVFDGDTEKENQKKKIQNFHECDDIYDDDENVPSIGSTEHIAVHSQEEVYEDDDSGNNNNNDSINHISEISSPKDFKNNFLPSKVKKSPFHCNPGPSLLKTTSKCNLNIKDKIKNLTILPKADKSKSPSTNEELYDDDENMDDIAFNNDQSYEVISSQGTYDKDSNDIKSKNSKSLEQASSTSSDDKNNCHNNCQLSSISPLIQTKEAQLKVTLKYQFQNIKSKTKKPILLEKMNKDQKNAKSNDDIYDEDEKDESNENNENTKQSIKTTLSYDTKNIFPNSEVHENVSNDNLTTKDSCKKEKKSFNFNFEKKLATFKTNFKDQVTSFRSDSNLKKEFKNDESSNLHEEVYDDDKSNEIEEIKKSEICENEDIYDDDENVNNDNNKEEQKSETISHYDFNDNKLSSDPKSTLGSLTTKKFSFDLNPISHLLDKNIFDLEQKTSKLKLMLKGHVKQLKHLSKTKKENSPLVNNEIYDVDDDAERGLCDSGMTSINNVSDLLKNFEDLSQENTDHSSQGSLQTPTLISKKIVKIPSEIIKGKKNIIDRNLKVIKEKTRIMAQNIKTQVQTFKESTRTNKTTEEGNREILENRSKENDDIYDDDENCNDLNESLDLAVISEQDVYDDDNNDIKNEISETPDQDSLASSQMEIESHKTIQNTSMPLITSKRLTFIQKKKDSLKTNIQLQVHNIKRFTKNKKNKRTLEKIKNDNFDRNEEVYDDDENSERLRDREDNASGSHNNESAEIYDEDETQLEIPRIQKPEYQNRKQFQKISSKNVEDKSLHEDSEDEEFDNSESDHSIDIKYIKNQFNSFSSKMHSKLKRKMIKLNQKSKLYFQKNERSEISKLPHSFDDEAVETESESSIEEPETRSYSAEINLAETRSYYDRKLEILLNLKRKIHKQMHTLERVKNNKGYTEGTSMGNTTKSNDIKTDVFDEIYDEDSGNEDFYTNPLQNNENQKHMNTSNLKDKKNDKEFIKTTELDITKGIVKSNVKNSIDKGVSRNDQDNSIQSENIQLTRVSESRNEPIKDKLTEIENIRNVEGISKTGFSFSRSDHQCQDKYVKDLLNKNISLKKERNPTEISQNKTIYPTKQSESGLTTNNSEIRPQSPLNPNQFIGNKESQSTPYSIKEISPKESLNIQERIKMHENLFNLQ 2034
The following BLAST results are available for this feature:
BLAST of SMED30030062 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30030062 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000049230.10.000e+097.94SMESG000049230.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30030062 ID=SMED30030062|Name=SMED30030062|organism=Schmidtea mediterranea sexual|type=transcript|length=6137bp
TTAAACTATGAAGGCATTAAGATCTTCGATTAAGAATAATTTAAATTCTA
AAAGACCTTTAAAAGTAAACGATAAAAGTAATGAAATTTATGATGAGGAT
GAGGACGGTGACGACGGCGACCAGAAGGACAAAGACTCAAAACTTGCCAA
TTCTAATTTTAGGAAAAACGAAAATTATAATTATGCAAAATTAGCAAACA
ATGCCAATTGTTCTGAACTTGTGACCTGCGATGATCCAAATGAATTTCTT
GAAAATCATTCTGAGATAAAGAAATCGGCTGGAAGCAATGACAAAATCAA
GAATAGATTCAATTTCACTAAAATGACAAGTAGAAGAAAGGTTTCAGATA
AATGCGTAAATGTATATGATGATGACAATGGCGACTTTATGAATATCAAT
CATCCCAATCTTGTTATGAGAGAAGAATTTGATAGTTGTAATCCCCAAAA
TATAAATAATAATAATAATGATAATAAGGTAAACTTGTTACCTTATCCTT
CAAATAAGAACAATATGCCATCTGAAAGTAAAATTAAAACAATGAACAAA
AAAGAAATAGAGCAAAAAGTCAAACTCCAGCAGACTCAATTGAATATTTT
AATGCCTTCCAAAGAAACCTTTAAAGAGAAAAAATCAAACAATGTCAAAA
ACATTGGAATTACTAAAGGATGTGTCGAAAATGATGAAGTTTATGATGAG
GATGACAACATGAACACTTCGGTATACCCGGTTGGAAATTTGAATAACTT
TCAAAATGATCAGTTAAAAGATGAGAATTTGATAAAGACAAAAGAAAACT
CCTCCCGGGATTTAAGATCTCCATCAATTACTAAAAGGTTTAAGACTTAC
ACAAAACAATTAAAAACACAAGTACAGCAGAGAAAAGCAGTTTCTAAACA
AACTTTGGAAAAATCAAAAGCTCTAAAACCTGAGAAAGAACCTTGTGATA
ACACAATAACAGACAAACTAGATGAGATTTATGACGAGGAATACGAAGTG
CAAGAGACGGAGGAGGTTTATGATGATGATGAAAATACTGATAATGAAGA
AATCAAAGATGACCAGATTTCAGAAAGATCTCTCCATAATGAGATTCACA
ACATTCATTCAAAAGATAATGTACAAGGCCAAAGATCTTCAGAAAAAAAT
AAAAAGTTATTCAATTTCAATTCAATGAAGAAAATCTTAACAAAAGAAAT
GAAATCCTCAAATGTGAATCAAAATGATAACGAACCAAAGATAGAAAACG
AAGAAATTCCAAATATTAACAAAGAGCTATCAAAGAATGAAGATAACTTG
ATCTTTGATGCTGAGGAGATTTACGTTGATGACAGCAATGTAAATGAGAA
TGATAATGTACATGGTAAAACCTGTGAAGAAATTCCAACCGATGAGATCC
ACGTGAGTCCCTCGAAGGTTGACCTTCAGAATTCAGGTGTATTGCCAAAG
AAAGAAGAAAAATCATCTTCCAGTTTAGATTCAGCATCACCAAATTTAAA
GAAAAGATTCCAAAACTTACAAAAGAAAACAACAAGTTTCAAATCTAAAT
TAAAGAATCACGTAAAAAACATTCAGCACCAGTCAAATGTAAAAGAAAGG
TATACTCCGTCTTGTAATGATGAGGTCTATGATGAAGATATGGAAAAGGA
AATTCATATTGAAAACAAGCAAAGCATGCCAAAAACCATCAATCAAGAAA
AGAGCTTACAACTGTTCTCAAAATTACAAATAAAAGATGCTAAATCGGGA
AAAGACAATTTGGAGAAAGTATCTCTAAAATTAAGTCCCCAAAACTTAAT
TGATACCGAGGAGATCTATGACGACGATGAAAATATAGTATTTCTTGAGA
ACTTTGAAAATAATAAGAAAGATGGTCATGATGAGGTTTACGATGATGAT
GATGATGATGAAAATGAGAATAATGCCCATGACAATACTGACAAAATGTC
AACAACAAATTCGCAAAAGGATATTCGGAGCATTAATTCAAACGAAAACT
CTCAGAATCAGCAATTACCTTCAAAGAATAGAAAACCTTCTTTCTGCTTA
GACTCAATTTCTCCATCTATAACCAAAAACATCCAATATTTACAAAACAA
AACAACAAATTTCAAATCTAAGTTAAAGAAGCAAGTAAAAACCATTCAAC
ATCAGCCTAAGGTAACAAAAAAGTGTATTTCCTCTAGTAATGACGAGGTT
TACGATGAAGACATGGGACAGGATATTAGTATTGAAAATACCCAAAGCAT
GCAGGCAACCGAAGAGATCTATGATGATGATGATGATAACAATGTTCTTC
ATGAAAACCGTGAACATTATGATAAACCGGATCATGAAGAGGTTTATGAC
GTTGATTATAATCAAATTAATGATGACCAAGCTACCAACACAATGTCATT
GAATGATTGTCATAGCAAGCAATCAAATAACGAATTGAGAGATCCAAGTC
CAATAAAAAAAAGAAATAAATCTTTCAGTTCAACTGTACATTTTCTAGAG
AAGAGGACCGCAAGTATAAAATCAAATATAACGAATCAAGTGAAACAAAT
GCCAAGTCTATCAAATATAATCAAGGAAAGATTGCCAAAAACTAACGATG
CAGTGAAACATCAGTGTAAGATAGACAAGGAAAATGCTCTCATAGGTAAT
GGTGGGGTGTTTGATGGAGACACGGAGAAAGAAAATCAGAAAAAGAAAAT
ACAAAATTTCCATGAATGTGACGATATATATGATGATGATGAAAATGTCC
CGAGCATTAGTAGCACTGAACATATTGCGGTTCATAGTCAGGAGGAAGTT
TACGAAGATGATGACAGTGGAAACAACAACAATAATGACAGTATCAATCA
CATTTCAGAAACATCTTCTCCCAAGGATTTTAAGAATAATTTCCTACCTT
CAAAGGTAAAGAAATCCCCTTTTCATTGCAACCCAGGGCCTTCTCTATTG
AAAACGACCTCAAAATGTAATTTGAATATAAAAGATAAAATTAAGAATCT
AACGATACTACCAAAAGCAGACAAATCCAAATCTCCGTCGACAAATGAAG
AATTGTATGATGATGACGAGAACATGGACGATATTGCTTTTAACAATGAT
CAAAGTTACGAAGTTATATCCTCACAAGGAACCTATGATAAGGATAGTAA
TGATATCAAGAGCAAAAACTCGAAATCCTTTGAACAAGCAAGCTCAACAT
CCTCTGATGATAAAAATAACTGCCATAACAATTGTCAACTGAGCTCTATT
TCACCTCTTATTCAAACAAAAGACGCCCAATTAAAAGTTACATTAAAATA
TCAATTTCAAAATATCAAAAGTAAAACCAAAAAACCAATTTTGTTGGAGA
AAATGAATAAAGATCAAGAAAATGCAAAATCTAATGATGACATTTATGAT
GAGGATGAAAAAGATGAAAGTAATGAAAATAATGAAAATACAAAGCAGTC
TATTAAAACAACACTATCTTATGACACTAAAAATATATTTCCCAATAGTG
AGGTTCATGAAAATGTATCAAATGATAATCTTACAACTAAAGATTCTTGT
AAAAAAGAAAAGAAATCTTTTAATTTTAATTTTGAAAAAAAACTTGCAAC
GTTTAAAACAAATTTCAAAGATCAAGTTACGAGCTTTCGGAGCGATTCAA
ATCTAAAGAAAGAATTTAAAAATGATGAGTCATCCAATCTGCATGAAGAG
GTGTATGACGATGACAAAAGTAACGAAATTGAAGAAATAAAAAAAAGTGA
AATATGTGAAAATGAAGATATATATGATGATGACGAAAATGTAAATAATG
ATAACAACAAAGAAGAACAAAAATCAGAGACGATTTCGCAATATGACTTT
AATGATAACAAACTGAGTTCTGATACGAAGAGTACTTTAGGATCTTTGAC
AACAAAAAAGTTCTTTGATTTGAATCCAATTTCACATTTGTTGGATAAGA
ATATTTTTGATTTAGAGCAAAAAACTTCTAAAATTAAGTTGATGCTAAAA
GGTCATGTAAAGCAGTTGAAACATCTTTCAAAGACCAAAAAGGAAAATTC
CCCACTTGTTAATAATGAAATATATGATGTTGATGATGATGCAGAAAGAG
GTCTATGTGATTCTGGAATGACATCAATAAATAATGTTTCTGACCTACTA
AAGAACTTTGAAGATCTATCTCAAGAAAATACAGATCATTCATCACAAGG
ATCATTGCAAACTCCAAAGCTAATATCAAAGAAAATTGTAAAGATTCCAT
CCGAAATAATTAAAGGAAAAAAGAATATTATTGACAGAAATTTAAAAGTG
ATAAAAGAGAAAACACGAATTATGGCTCAGAATATCAAAACCCAAGTACA
AACCTTTAAAGAATCAACAAGGACTAATAAGACCACCGAGGAAGGTAACA
GGGAAATTCTTGAAAATAGATCCAAAGAAAATGATGATATCTATGACGAT
GATGAAAATTGTAATGATTTAAACGAAAGCCTAGACCTTGCAGTAATTTC
TGAACAAGATGTTTATGACGATGATAATAATGACATAAAGAATGAAATTT
CAGAAACTCCCGATGAAGACAGTCTGGCGTCTTCTCAAATGGAAATAGAA
AGTCATAAAACTATCCAAAATACATCAATGCCACTAATAACCTCAAAAAG
ATTAACCTTTATTCAAAAGAAAAAGGATAGTTTGAAGACAAATATACAAT
TGCAAGTTCACAACATCAAACGCTTTACAAAAAACAAAAAGAATAAAAGA
ACTTTAGAGAAAATTAAAAATGACAATTTCGATCGAAATGAAGAGGTTTA
CGATGATGACGAAAACAGCGAAAGGCTGAGAGATAAAGAGGATAATGCAT
CGGGTTTCCATAATAATGAATCTGCCGAAATCTACGATGAAGATGAAACC
CAGTTGGAGATTCCACGGATCCAAAAACCGGAATATCAAAATCGGAAACA
ATTCCAGAAAATAAGTTCAAAGAATGTTGAAGACAAAAGTTTACATGAAG
ACAGTGAGGATGAAGAATTTGATAACTCAGAGAGCGATCACTCAATCGAC
ATAAAGTATATCAAAAACCAATTCAACAGTTTCTCATCCAAAATGCATTC
TAAATTGAAAAGGAAAATGATAAAACTTAATCAAAAATCGAAATTGTATT
TCCAAAAAAATGAAAGAAGTGAAATTTCAAAATTGCCGTATTCATTTGAC
GACGAAGCGGTTGAAACGGAGTCAGAATCGTCTATTGAGGAGCCGGAAAC
AAGATCCTACAGTGCCGAAATTAATTTGGCTGAAACAAGATCTTATTATG
ATAGAAAGCTTGAGATTCTACTAAATTTAAAAAGAAAAATACACAAGCAA
ATGCACACTTTGGAGCGTGTGAAAAATAACAAAGGGAACACTGAAGGTAC
ATCAATGGGAAACACCACAAAGTCGAATGACATTAAAACTGACGTCTTTG
ATGAGATTTACGACGAAGATTCAGGTAACGAAGATTTTTATACAAATCCA
TTACAAAATAATGAAAACCAAAAACACATGAATACTTCAAACTTGAAAGA
CAAAAAGAACGATAAAGAGTTTATTAAAACAACTGAATTGGACATAACCA
AAGGAATAGTAAAGTCAAACGTTAAAAATAACATCGATAAAGGTGTCAGC
AGGAATGATCAGGATAACTCAATCCAGTCAGAAAATATACAATTAACACG
TGTGTCAGAAAGTCGTAATGAACCAATAAAAGATAAACTTACTGAAATAG
AAAATATCAGAAATGTTGAAGGAATTTCAAAGACTGGATTCTCATTTTCT
AGAAGTGATCATCAATGTCAAGACAAATATGTTAAAGACTTACTAAATAA
AAATATGTCTTTGAAAAAAGAGAGAAATCAAACAGAAATATCACAAAACG
AAACTATCTATCCAACCAAACAATCAGAATCCGGCCTCACAACAAACAAT
TCAGAGATTCGTCCACAAAGTCCCCTGAATCCAAACCAATTTATCGGAAA
TATAGAATCTCAAAGTCCTCCTTACTCCATCAAAGAAATCTCCCCCAAAG
AATCTCTTAATATTCAAGAAAGAATAAAGATGCATGAAAACTTAGTTAAT
CTCCAGTAGATTTTTCATGAATCTTTTTATATTTGTC
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protein sequence of SMED30030062-orf-1

>SMED30030062-orf-1 ID=SMED30030062-orf-1|Name=SMED30030062-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=2034bp
MKALRSSIKNNLNSKRPLKVNDKSNEIYDEDEDGDDGDQKDKDSKLANSN
FRKNENYNYAKLANNANCSELVTCDDPNEFLENHSEIKKSAGSNDKIKNR
FNFTKMTSRRKVSDKCVNVYDDDNGDFMNINHPNLVMREEFDSCNPQNIN
NNNNDNKVNLLPYPSNKNNMPSESKIKTMNKKEIEQKVKLQQTQLNILMP
SKETFKEKKSNNVKNIGITKGCVENDEVYDEDDNMNTSVYPVGNLNNFQN
DQLKDENLIKTKENSSRDLRSPSITKRFKTYTKQLKTQVQQRKAVSKQTL
EKSKALKPEKEPCDNTITDKLDEIYDEEYEVQETEEVYDDDENTDNEEIK
DDQISERSLHNEIHNIHSKDNVQGQRSSEKNKKLFNFNSMKKILTKEMKS
SNVNQNDNEPKIENEEIPNINKELSKNEDNLIFDAEEIYVDDSNVNENDN
VHGKTCEEIPTDEIHVSPSKVDLQNSGVLPKKEEKSSSSLDSASPNLKKR
FQNLQKKTTSFKSKLKNHVKNIQHQSNVKERYTPSCNDEVYDEDMEKEIH
IENKQSMPKTINQEKSLQLFSKLQIKDAKSGKDNLEKVSLKLSPQNLIDT
EEIYDDDENIVFLENFENNKKDGHDEVYDDDDDDENENNAHDNTDKMSTT
NSQKDIRSINSNENSQNQQLPSKNRKPSFCLDSISPSITKNIQYLQNKTT
NFKSKLKKQVKTIQHQPKVTKKCISSSNDEVYDEDMGQDISIENTQSMQA
TEEIYDDDDDNNVLHENREHYDKPDHEEVYDVDYNQINDDQATNTMSLND
CHSKQSNNELRDPSPIKKRNKSFSSTVHFLEKRTASIKSNITNQVKQMPS
LSNIIKERLPKTNDAVKHQCKIDKENALIGNGGVFDGDTEKENQKKKIQN
FHECDDIYDDDENVPSISSTEHIAVHSQEEVYEDDDSGNNNNNDSINHIS
ETSSPKDFKNNFLPSKVKKSPFHCNPGPSLLKTTSKCNLNIKDKIKNLTI
LPKADKSKSPSTNEELYDDDENMDDIAFNNDQSYEVISSQGTYDKDSNDI
KSKNSKSFEQASSTSSDDKNNCHNNCQLSSISPLIQTKDAQLKVTLKYQF
QNIKSKTKKPILLEKMNKDQENAKSNDDIYDEDEKDESNENNENTKQSIK
TTLSYDTKNIFPNSEVHENVSNDNLTTKDSCKKEKKSFNFNFEKKLATFK
TNFKDQVTSFRSDSNLKKEFKNDESSNLHEEVYDDDKSNEIEEIKKSEIC
ENEDIYDDDENVNNDNNKEEQKSETISQYDFNDNKLSSDTKSTLGSLTTK
KFFDLNPISHLLDKNIFDLEQKTSKIKLMLKGHVKQLKHLSKTKKENSPL
VNNEIYDVDDDAERGLCDSGMTSINNVSDLLKNFEDLSQENTDHSSQGSL
QTPKLISKKIVKIPSEIIKGKKNIIDRNLKVIKEKTRIMAQNIKTQVQTF
KESTRTNKTTEEGNREILENRSKENDDIYDDDENCNDLNESLDLAVISEQ
DVYDDDNNDIKNEISETPDEDSLASSQMEIESHKTIQNTSMPLITSKRLT
FIQKKKDSLKTNIQLQVHNIKRFTKNKKNKRTLEKIKNDNFDRNEEVYDD
DENSERLRDKEDNASGFHNNESAEIYDEDETQLEIPRIQKPEYQNRKQFQ
KISSKNVEDKSLHEDSEDEEFDNSESDHSIDIKYIKNQFNSFSSKMHSKL
KRKMIKLNQKSKLYFQKNERSEISKLPYSFDDEAVETESESSIEEPETRS
YSAEINLAETRSYYDRKLEILLNLKRKIHKQMHTLERVKNNKGNTEGTSM
GNTTKSNDIKTDVFDEIYDEDSGNEDFYTNPLQNNENQKHMNTSNLKDKK
NDKEFIKTTELDITKGIVKSNVKNNIDKGVSRNDQDNSIQSENIQLTRVS
ESRNEPIKDKLTEIENIRNVEGISKTGFSFSRSDHQCQDKYVKDLLNKNM
SLKKERNQTEISQNETIYPTKQSESGLTTNNSEIRPQSPLNPNQFIGNIE
SQSPPYSIKEISPKESLNIQERIKMHENLVNLQ*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0003001lateral region of the whole animal
PLANA:0003116parenchymal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1773..1793
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 298..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1112..1151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 644..680
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1519..1541
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1262..1280
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 444..500
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1958..2008
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1596..1678
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1451..1478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1055..1071
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1457..1478
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 805..819
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 799..820
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 448..466
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1112..1130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1040..1071
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 291..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 630..680
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1258..1285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1963..2008
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1596..1638