Pre-mRNA-processing factor 40
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30029911 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Human
Match: PRPF40A (pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]) HSP 1 Score: 370.933 bits (951), Expect = 3.928e-114 Identity = 207/415 (49.88%), Postives = 292/415 (70.36%), Query Frame = 1 Query: 616 PIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLK--SHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYL 1854 P + + TKEE ++ ++ +LKE VP NA+WE A+KMI DPRY L K ++KKQ FN YK Q +K+E+EEAR + K+AKE ++FL NH K++S Y+KA+ + + W A+ ERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T+ TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EEEK++ R +R QRKNRE+F +F+DELHE G+L S+S W +LY IS D RF ML QPGST LDLFKFYV +LK+R+ EK+I+K+IL+D+ F + NT+ E F+ +I +R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK + I+ WE++ ++ F+ + LES+R + +K+++ Sbjct: 356 PAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFM 770 HSP 2 Score: 122.865 bits (307), Expect = 6.149e-28 Identity = 65/140 (46.43%), Postives = 88/140 (62.86%), Query Frame = 1 Query: 148 LPP----TSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENN--TTDKPKESSAIDEAIKATLGSMPSS 549 LPP V + + WTEH + DGRTYYYN TKQSTWEKPD+LKTPAE++LS+CPWKE+KS+ GK YYYN+ T++S W KP EL + E Y N + + I ++N K +ESS +E + +P++ Sbjct: 98 LPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLE--GYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTT 235
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Human
Match: PRPF40B (pre-mRNA processing factor 40 homolog B [Source:HGNC Symbol;Acc:HGNC:25031]) HSP 1 Score: 363.229 bits (931), Expect = 1.170e-111 Identity = 205/444 (46.17%), Postives = 302/444 (68.02%), Query Frame = 1 Query: 631 VVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKESVSSREH 1956 + + +E+ ++ ++ +L++ VP NA+WE A+KM+ DPRY L K ++KKQ FN YK QR+K+E+EEARLR K+AK+ L+ FL H +++S YR+A+ + W VPERDR+E+Y+D L + K+EKE+AK LR+RNI+ ILD M ++ F+TTW +AQ+ L++NP F +D LQ+MDKEDALICFEEHIR LE++ EEE+ER + R +R QRKNREAF F+DELHE G+L S+S W +LY +S D RF ML QPGSTPLDLFKFYV ELK+RF EK+I+K+IL+DR F + NT+ E F VI D+R LD GN+++ + SL+E+AE+ E++R KE ++ ++ E F+ ML+ ++ +WEEV ++ F+ + LES+R++ ++E+L + + + + + RKH K+ R H Sbjct: 293 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLETECQHLHT----KGRKHGRKGKKHHHKRSH 732 HSP 2 Score: 102.834 bits (255), Expect = 1.008e-21 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 112 PLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL 426 P+T + P + ++V + P P W+EH+A DGR YYYN KQS WEKP LK+ AE +LS+CPWKE+KS+ GK YYYN +++S W +P +L + E L Sbjct: 94 PVT-AATAPGADTASSAVAGTGP--PRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEVL 195
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Human
Match: PRPF40B (pre-mRNA processing factor 40 homolog B [Source:HGNC Symbol;Acc:HGNC:25031]) HSP 1 Score: 361.688 bits (927), Expect = 2.596e-111 Identity = 205/444 (46.17%), Postives = 302/444 (68.02%), Query Frame = 1 Query: 631 VVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKESVSSREH 1956 + + +E+ ++ ++ +L++ VP NA+WE A+KM+ DPRY L K ++KKQ FN YK QR+K+E+EEARLR K+AK+ L+ FL H +++S YR+A+ + W VPERDR+E+Y+D L + K+EKE+AK LR+RNI+ ILD M ++ F+TTW +AQ+ L++NP F +D LQ+MDKEDALICFEEHIR LE++ EEE+ER + R +R QRKNREAF F+DELHE G+L S+S W +LY +S D RF ML QPGSTPLDLFKFYV ELK+RF EK+I+K+IL+DR F + NT+ E F VI D+R LD GN+++ + SL+E+AE+ E++R KE ++ ++ E F+ ML+ ++ +WEEV ++ F+ + LES+R++ ++E+L + +++ + RKH K+ R H Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVL---EQTECQHLHTKGRKHGRKGKKHHHKRSH 711 HSP 2 Score: 102.834 bits (255), Expect = 1.002e-21 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 112 PLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL 426 P+T + P + ++V + P P W+EH+A DGR YYYN KQS WEKP LK+ AE +LS+CPWKE+KS+ GK YYYN +++S W +P +L + E L Sbjct: 72 PVT-AATAPGADTASSAVAGTGP--PRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEVL 173
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Human
Match: PRPF40B (pre-mRNA processing factor 40 homolog B [Source:HGNC Symbol;Acc:HGNC:25031]) HSP 1 Score: 347.436 bits (890), Expect = 5.475e-106 Identity = 202/444 (45.50%), Postives = 298/444 (67.12%), Query Frame = 1 Query: 631 VVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKESVSSREH 1956 + + +E+ ++ ++ +L++ VP NA+WE A+KM+ DPRY L K ++KKQ FN YK QR+K+E+EEARLR K+AK+ L+ FL H +++S YR+A+ + W VPERDR+E+Y+D L + K+EKE+AK LR+RNI+ ILD M ++ F+TTW +AQ+ L++NP F +D LQ+MDKEDALICFEEHIR LE++ EEE+ER + R +R QRKNREAF F+DELHE G+L S+S W +LY +S D RF ML QPGSTPLDLFKFYV ELK+RF EK+I+K+IL+ NT+ E F VI D+R LD GN+++ + SL+E+AE+ E++R KE ++ ++ E F+ ML+ ++ +WEEV ++ F+ + LES+R++ ++E+L + +++ + RKH K+ R H Sbjct: 265 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILK-------VNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVL---EQTECQHLHTKGRKHGRKGKKHHHKRSH 698 HSP 2 Score: 102.834 bits (255), Expect = 1.058e-21 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 112 PLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL 426 P+T + P + ++V + P P W+EH+A DGR YYYN KQS WEKP LK+ AE +LS+CPWKE+KS+ GK YYYN +++S W +P +L + E L Sbjct: 66 PVT-AATAPGADTASSAVAGTGP--PRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEVL 167
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Human
Match: PRPF40A (pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]) HSP 1 Score: 117.857 bits (294), Expect = 4.820e-28 Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKP 489 WTEH + DGRTYYYN TKQSTWEKPD+LKTPAE++LS+CPWKE+KS+ GK YYYN+ T++S W KP EL + E + + E +T P Sbjct: 139 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEAMIKAEESSKQEECTTTSTAPVP 235
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Celegans
Match: ZK1098.1 (WW domain-containing protein ZK1098.1 [Source:UniProtKB/Swiss-Prot;Acc:P34600]) HSP 1 Score: 392.504 bits (1007), Expect = 5.339e-125 Identity = 242/616 (39.29%), Postives = 361/616 (58.60%), Query Frame = 1 Query: 91 NYQFTLPPLTHSYPVPTSYLPPTSV---QNSLPTLP--------------------EQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECP----WKEFKSEQGKIYYYNTVTQQSVWQKPP--ELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEY 1851 N +F +PP+ VP +P SV + PT P E W+ H + G YY+N +TKQ++W KPD LKTP E+ S P WKEF S+ GK YYYNT+T+++ W KP E+ + E+ T D + + K S +D+A+KATL SMP+ ++ S DEV ++ R E E R + + N W+ AVK I DPR++ L K ++KKQ+FN +K QR K+ER+E RL IKK+KEDLEKFL H K+ ++ Y+KA + S P W AV + DR+EI+ D + + +R+KE+ + RKR+I F+ +L M +T+KTTW +AQRIL ENP+F E +DL MDKEDAL FE+HI+ EK+H+EEKE+E++RL+R QRK RE + + ++ LH++G+LTS+S+W L+ IIS D RF ML QPGS+PLDLFKF+V +LK ++++++R++KEIL ++ T F + E+G +D GN+++ Y SLIE+AES K KE L+++++ E F+ +LK H++ W + K+ + + +E + +R + Y Sbjct: 25 NQRFGMPPVGSIAQVPLLQMPTHSVVAPHVAAPTRPSPMLVPPGMGIDESHSSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERSTSGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAATVDT-VALAAAVQQKKAESDLDKAMKATLASMPNVPLPSEKKEEESVNDEV----------ELKKRQSERFRELLRDKYNDGKITTNCNWDQAVKWIQNDPRFRILNKVSEKKQLFNAWKVQRGKEERDEKRLAIKKSKEDLEKFLQEHPKMKESLKYQKASDIFSKEPLWIAVNDEDRKEIFRDCIDFVARRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQFAERKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEKRLRRQQRKVREEYRLLLESLHKRGELTSMSLWTSLFPIISTDTRFELMLFQPGSSPLDLFKFFVEDLKEQYTEDRRLIKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMKLCYNSLIEKAESKAKDEEKESLRRKRRLESEFRNLLKEHNVDKDSEWTVIKPKIEKDKAYLAMENDDERETAFNHY 629
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Celegans
Match: ZK1098.1 (WW domain-containing protein ZK1098.1 [Source:UniProtKB/Swiss-Prot;Acc:P34600]) HSP 1 Score: 226.483 bits (576), Expect = 5.097e-66 Identity = 132/310 (42.58%), Postives = 208/310 (67.10%), Query Frame = 1 Query: 898 LSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHDIKSSVSWEEVCQKLGNLEDFKFVELESD 1827 + ++ Y+KA + S P W AV + DR+EI+ D + + +R+KE+ + RKR+I F+ +L M +T+KTTW +AQRIL ENP+F E +DL MDKEDAL FE+HI+ EK+H+EEKE+E++RL+R QRK RE + + ++ LH++G+LTS+S+W L+ IIS D RF ML QPGS+PLDLFKF+V +LK ++++++R++KEIL ++ T F + E+G +D GN+++ Y SLIE+AES K KE L+++++ E F+ +LK H++ W + K+ +D ++ +E+D Sbjct: 1 MKESLKYQKASDIFSKEPLWIAVNDEDRKEIFRDCIDFVARRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQFAERKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEKRLRRQQRKVREEYRLLLESLHKRGELTSMSLWTSLFPIISTDTRFELMLFQPGSSPLDLFKFFVEDLKEQYTEDRRLIKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMKLCYNSLIEKAESKAKDEEKESLRRKRRLESEFRNLLKEHNVDKDSEWTVIKPKIE--KDKAYLAMEND 308
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Celegans
Match: tcer-1 (TransCription Elongation Regulator homolog [Source:UniProtKB/TrEMBL;Acc:Q95PX9]) HSP 1 Score: 71.633 bits (174), Expect = 1.546e-12 Identity = 77/303 (25.41%), Postives = 140/303 (46.20%), Query Frame = 1 Query: 307 LSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL-AYGNNDTSDNEINENNTTDK-------------PKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEE---GWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFV 1161 +S PW + K+++YN T+ SVW++PP+ E + N S ENN + K PK + E K L ++ K + V+PA + + R K LEE ++ +L+E NV ++T+E + I D RY L +++ F+ + ++ + E+ E R R+K+AKE+ +K L+ +L+ Y S P + AV RDR + + D + ++ K+EK+E + +++ F ++L+ LT K+ W ++ L + R++ Sbjct: 124 VSGTPWCVVWTGDDKVFFYNPSTKCSVWERPPDTYGREDVDKLVQNPPSPKAEEENNQSKKESESESESDEDGPPKAKKSRAEKKKEAL---IAAQKKEKERPRQMLQKPVDPAIEAEM-QAAKEREKVPLEERLKQFKEMLEEKNVSTSSTFEKELSKIVFDKRYLSLG-ATERRACFDAFCREKIESEKAERRKRVKEAKEEFQK-LLAECELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDFVGELHKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYI 420 HSP 2 Score: 49.6766 bits (117), Expect = 7.963e-6 Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1 Query: 166 QNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDEL 285 +P P+ AW E A DGR YY+N IT+++TWEKP L Sbjct: 3 HGQIPQNPDDAWNEFNAPDGRKYYFNSITQENTWEKPKAL 42
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Celegans
Match: tcer-1 (TransCription Elongation Regulator homolog [Source:UniProtKB/TrEMBL;Acc:Q95PX9]) HSP 1 Score: 71.633 bits (174), Expect = 1.546e-12 Identity = 77/303 (25.41%), Postives = 140/303 (46.20%), Query Frame = 1 Query: 307 LSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL-AYGNNDTSDNEINENNTTDK-------------PKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEE---GWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFV 1161 +S PW + K+++YN T+ SVW++PP+ E + N S ENN + K PK + E K L ++ K + V+PA + + R K LEE ++ +L+E NV ++T+E + I D RY L +++ F+ + ++ + E+ E R R+K+AKE+ +K L+ +L+ Y S P + AV RDR + + D + ++ K+EK+E + +++ F ++L+ LT K+ W ++ L + R++ Sbjct: 124 VSGTPWCVVWTGDDKVFFYNPSTKCSVWERPPDTYGREDVDKLVQNPPSPKAEEENNQSKKESESESESDEDGPPKAKKSRAEKKKEAL---IAAQKKEKERPRQMLQKPVDPAIEAEM-QAAKEREKVPLEERLKQFKEMLEEKNVSTSSTFEKELSKIVFDKRYLSLG-ATERRACFDAFCREKIESEKAERRKRVKEAKEEFQK-LLAECELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDFVGELHKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYI 420 HSP 2 Score: 49.6766 bits (117), Expect = 7.963e-6 Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1 Query: 166 QNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDEL 285 +P P+ AW E A DGR YY+N IT+++TWEKP L Sbjct: 3 HGQIPQNPDDAWNEFNAPDGRKYYFNSITQENTWEKPKAL 42
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Celegans
Match: tcer-1 (TransCription Elongation Regulator homolog [Source:UniProtKB/TrEMBL;Acc:Q95PX9]) HSP 1 Score: 71.633 bits (174), Expect = 1.546e-12 Identity = 77/303 (25.41%), Postives = 140/303 (46.20%), Query Frame = 1 Query: 307 LSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL-AYGNNDTSDNEINENNTTDK-------------PKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEE---GWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFV 1161 +S PW + K+++YN T+ SVW++PP+ E + N S ENN + K PK + E K L ++ K + V+PA + + R K LEE ++ +L+E NV ++T+E + I D RY L +++ F+ + ++ + E+ E R R+K+AKE+ +K L+ +L+ Y S P + AV RDR + + D + ++ K+EK+E + +++ F ++L+ LT K+ W ++ L + R++ Sbjct: 124 VSGTPWCVVWTGDDKVFFYNPSTKCSVWERPPDTYGREDVDKLVQNPPSPKAEEENNQSKKESESESESDEDGPPKAKKSRAEKKKEAL---IAAQKKEKERPRQMLQKPVDPAIEAEM-QAAKEREKVPLEERLKQFKEMLEEKNVSTSSTFEKELSKIVFDKRYLSLG-ATERRACFDAFCREKIESEKAERRKRVKEAKEEFQK-LLAECELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDFVGELHKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYI 420 HSP 2 Score: 49.6766 bits (117), Expect = 7.963e-6 Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1 Query: 166 QNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDEL 285 +P P+ AW E A DGR YY+N IT+++TWEKP L Sbjct: 3 HGQIPQNPDDAWNEFNAPDGRKYYFNSITQENTWEKPKAL 42
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Fly
Match: CG3542 (gene:FBgn0031492 transcript:FBtr0077648) HSP 1 Score: 451.055 bits (1159), Expect = 2.749e-146 Identity = 263/590 (44.58%), Postives = 371/590 (62.88%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNND----------TSDN---------------------------EINENNTTDKPKESS-AIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYL 1854 WTEH A DGR YYYN TKQS+WEKP+ L TPAE + ++CPWKE++S+ GK+YY+N T+++ W+ PPE + + A TS + EI+ T + SS A+D+A+ ATL ++ + N+ KD SE VV++ K E E ++ +L++ NVP NA W+ VK+IS DPRY K N++KQ FN YKTQ+ KDEREE+RL+ KKAKEDLE+FLM+ K++S + Y + + + + WTAVPE DRR+IYED + + KREKEEA++L+KRN+K+ E+L+ M ++ TTW EAQ +LL+N F D L MDKEDALI FEEHIR LEK+ +EE+EREK+R+KR QRKNR++F +D LHE+GKLTS+S+W +LY IIS D RF ML Q GSTPLDLFKFYV LK+RF EK+I++EIL+++ F TS E F V+ D+R +LD GNV++ Y SL+E+AE+IEK+R+KE +++ +K E K ++ + +E + + +LE F E E K +++++ Sbjct: 56 WTEHKAPDGRPYYYNQNTKQSSWEKPEALMTPAELLHNQCPWKEYRSDTGKVYYHNVATKETCWEPPPEYVDMKAKAKAEEAAAAAKAVAAMTSSSLAGMVPPAALASILPAALPVAPRLPTPEIHSPLTPSSNENSSSAMDQAMAATLAAI--EVPQQNAKKDDKSES------------AVVFKDKREAIESFKELLRDRNVPSNANWDQCVKIISKDPRYAAFKNLNERKQTFNAYKTQKIKDEREESRLKAKKAKEDLEQFLMSSDKMNSQMKYFRCEEVFAGTRTWTAVPEPDRRDIYEDCIFNLAKREKEEARLLKKRNMKVLGELLESMTSINHATTWSEAQVMLLDNVAFKNDVTLLGMDKEDALIVFEEHIRTLEKEEDEEREREKKRMKRQQRKNRDSFLALLDSLHEEGKLTSMSLWVELYPIISADLRFSAMLGQSGSTPLDLFKFYVENLKARFHDEKKIIREILKEKAFVVQAKTSFEDFATVVCEDKRSASLDAGNVKLTYNSLLEKAEAIEKERMKEEVRRLRKLENEIKNEWLEANVSVAEPYESAKKLVEHLEAFALYEKEIGVEKIWEDFV 631
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Fly
Match: CG42724 (gene:FBgn0261641 transcript:FBtr0334545) HSP 1 Score: 65.855 bits (159), Expect = 1.522e-10 Identity = 74/327 (22.63%), Postives = 141/327 (43.12%), Query Frame = 1 Query: 307 LSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDK-PKESSAIDEAIKATLGSMPSSSDKVNSHK----------------------DSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRV------------------ILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNI-KLFNEILDVMPNLTFKTTWYEAQRILLENPRF 1158 ++ PW + ++++YN T+ SVW +P +L N + D +NE K P+E SA E + + +V + + +S S E P + + K LE R +L+E +V +TWE + I DPRY L ++KQ+F Y R ++ER+E R ++++ +ED + LM ++L + + + + A+ + R+R ++ + ++++ +REKE+ K+L+K I K F ++L ++ T WY+ ++ +PR+ Sbjct: 438 IAGTPWCVVWTGDSRVFFYNPSTRTSVWDRPEDLL--------NREDVDKAVNERPEQLKTPQEKSAEAEQKSGEEANQEQAKSQVQAQQLDQVQRVDADDDDDDEVIKIRTESESSVEEVPTKRVRMISKSKRAEDAALEAEQRAAKERALVPLEMRVTQFKEMLREKDVSAFSTWEKELHKIVFDPRYL-LLTSKERKQVFEKYVKDRAEEERKEKRNKMRQKREDF-RSLMEEARLHGKSSFSEFSQRNAKDERYRAIEKVRERESLFNEYIVEVRRREKED-KLLKKEQIRKDFLDMLRERHDIERHTRWYDIKKKFESDPRY 753 HSP 2 Score: 50.0618 bits (118), Expect = 9.592e-6 Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1 Query: 181 TLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSEC 318 T P + W E A+DGR+YYY+ +T+++TW +PD PA KI+++ Sbjct: 111 TGPPEIWVETKAEDGRSYYYHAVTRETTWSRPD---GPAVKIMTQA 153
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Fly
Match: CG42724 (gene:FBgn0261641 transcript:FBtr0303013) HSP 1 Score: 65.855 bits (159), Expect = 1.522e-10 Identity = 74/327 (22.63%), Postives = 141/327 (43.12%), Query Frame = 1 Query: 307 LSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDK-PKESSAIDEAIKATLGSMPSSSDKVNSHK----------------------DSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRV------------------ILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNI-KLFNEILDVMPNLTFKTTWYEAQRILLENPRF 1158 ++ PW + ++++YN T+ SVW +P +L N + D +NE K P+E SA E + + +V + + +S S E P + + K LE R +L+E +V +TWE + I DPRY L ++KQ+F Y R ++ER+E R ++++ +ED + LM ++L + + + + A+ + R+R ++ + ++++ +REKE+ K+L+K I K F ++L ++ T WY+ ++ +PR+ Sbjct: 438 IAGTPWCVVWTGDSRVFFYNPSTRTSVWDRPEDLL--------NREDVDKAVNERPEQLKTPQEKSAEAEQKSGEEANQEQAKSQVQAQQLDQVQRVDADDDDDDEVIKIRTESESSVEEVPTKRVRMISKSKRAEDAALEAEQRAAKERALVPLEMRVTQFKEMLREKDVSAFSTWEKELHKIVFDPRYL-LLTSKERKQVFEKYVKDRAEEERKEKRNKMRQKREDF-RSLMEEARLHGKSSFSEFSQRNAKDERYRAIEKVRERESLFNEYIVEVRRREKED-KLLKKEQIRKDFLDMLRERHDIERHTRWYDIKKKFESDPRY 753 HSP 2 Score: 50.0618 bits (118), Expect = 9.592e-6 Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1 Query: 181 TLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSEC 318 T P + W E A+DGR+YYY+ +T+++TW +PD PA KI+++ Sbjct: 111 TGPPEIWVETKAEDGRSYYYHAVTRETTWSRPD---GPAVKIMTQA 153
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Zebrafish
Match: prpf40a (PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]) HSP 1 Score: 471.47 bits (1212), Expect = 1.644e-153 Identity = 279/585 (47.69%), Postives = 392/585 (67.01%), Query Frame = 1 Query: 196 AWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGN-NDTSD----------NEINENNTTDKP---KESSAIDEAIKATLGSMPS-----SSD-KVNSHKDSSSEDEVNPAHNI-----PIPEKVVYR--TKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLK--SHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 WTEH + DG+ YYYN TKQSTWEKPDELK+PAE++LS+CPWKE+KS+ GK YYYN+ T++S W KP EL + E + N T+D NE++ T P E++ I+ +P+ SSD VNS +++ S E P++++ P K VY+ TKEE ++ ++ +LKE V NA+WE A+K+I DPRY L K ++KKQ FN YK Q +K+E+EEAR++ K++KE ++FL NH K++S Y+KA+ + D W+ VPERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T++TTW EAQ+ LL+NP F EDE+LQ+MDKEDALICFEEHIR LEK+ E+EK++ R +R QRKNRE+F F+DELH+ G+L S+S W ++Y IS D RF ML QPGSTPLDLFKFYV +LK+R+ EKRI+K+IL+D+ F + NT E F VI D+R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK + ++ +WE V ++ F+ + LES+R + +K+++ + Sbjct: 111 VWTEHKSLDGKIYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTADVVAPGTTPALTAQNESSVTVAPVAETEATMATGTIEEQPSHVPAQVAEVSSDVAVNSTEETPSV-ETQPSNDVSKEERPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGDQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTISADIRFSNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEINTGFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPEATWEGVRERFLKEPAFEDITLESERKRIFKDFMHVL 694
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Zebrafish
Match: CU929230.1 (transcription elongation regulator 1b (CA150) [Source:NCBI gene;Acc:797473]) HSP 1 Score: 77.411 bits (189), Expect = 4.828e-14 Identity = 98/397 (24.69%), Postives = 169/397 (42.57%), Query Frame = 1 Query: 55 IILNGIEISMSNNYQFTLPPLT-HSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELK------------------------------------TPAEKILSE------------------CPWKEFKSEQGKIYYYNTVTQQSVWQKPPEL-AEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDK--------VNSHKDSSSEDEVNPAHN---IPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAK 1041 + L G+ I + PPL +P T P S+ ++P LPE W+E DGR YYYN T +STWEKP ELK P E+ ++E PW + +++YYN T+ S+W +P EL A+ Y +++ KE ID A++ L PS + K + KD + E E+ A + +P+ ++ +R +L E V +TW+ + I DPRY L ++KQ+F+ Y R ++ER+E + ++ ++K+D + +M +KL + + + + S P + A+ + +DR ++ + + K++KE++K Sbjct: 307 VPLPGMHIPLPG----MGPPLVPMMHPQLTIAASPMSLAGAIP-LPE--WSEFKTADGRIYYYNNRTLESTWEKPFELKERDKDSDKARDIHNNINLDLKLIDMEAKADFGKSKELPREEDMTEEEKATQKGKPVATNPIPGTPWCVVWTGDERVFYYNPTTRLSMWDRPEELVGRADVDRYIQEPPHKRGLDDIKKIGFNKEE--IDTAMEDMLDDEPSKAKKRKKDDVKEPEAAKDVAVEAELKAARDRALVPLEARM---------NQFRDMLLERGVSAFSTWDKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEERKEKKNKLMQSKDDFRR-MMEDAKLHTRTTFSEFAAKHSKDPRFKAIEKMKDREVMFTEFMTAFRKKDKEDSK 683
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Zebrafish
Match: TCERG1L (transcription elongation regulator 1 like [Source:NCBI gene;Acc:110437752]) HSP 1 Score: 56.9954 bits (136), Expect = 6.994e-8 Identity = 59/261 (22.61%), Postives = 117/261 (44.83%), Query Frame = 1 Query: 274 PDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQ-MGKREKEEAKVLRK 1053 P + + A + PW + +++++N SVW+KP +L + L D ++++++ DE + S K++ D + + +H + +P ++ +R +L E V +TWE + + DPRY L Q+KQI++ + R +E +E + ++++AKE+ +K L+ SK++S ++ P + V +R +E++ I + KR+KE LRK Sbjct: 341 PKDKRPVASTPIPGSPWCVVWTGDDRVFFFNPTMHLSVWEKPVDLKDRGDLNRIIEDPPHKRKKDDDSSNSSSGDEEDDEEHNSK-----SKRYKLDHSVDCDEDGKNGSSHRMVLPLELRI-------AHFRDMLLERGVSAFSTWEKELHKVVFDPRYLLLNP-EQRKQIYDQFVKARMNEEHKEKKCKLQQAKEEYKK-LLEESKITSKSTFKDFSEKYGKDPRFKQVQKRKDQELFFSQFINTLKKRDKENRIRLRK 587
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Zebrafish
Match: arhgap12a (Rho GTPase activating protein 12a [Source:ZFIN;Acc:ZDB-GENE-050809-38]) HSP 1 Score: 50.447 bits (119), Expect = 6.786e-6 Identity = 26/71 (36.62%), Postives = 39/71 (54.93%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKP---DELKTPAEKI-LSECPWKEFKSEQGKIYYYNTVTQQSVWQKP 399 W H Q+GR YYYN T++ TW+ P D L EK +++ W E+G++YYY+ +S W+ P Sbjct: 207 WETHKDQNGRHYYYNRSTQERTWKPPRARDSLPRKEEKHDMTDTEWLRHTDERGRLYYYSADGSRSEWELP 277
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Xenopus
Match: PRPF40B (pre-mRNA processing factor 40 homolog B [Source:NCBI gene;Acc:100493450]) HSP 1 Score: 486.878 bits (1252), Expect = 1.267e-158 Identity = 291/605 (48.10%), Postives = 402/605 (66.45%), Query Frame = 1 Query: 124 SYPVPTSYLPPTSVQNSLPT--LPEQA--WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINEN-----------NTTDKPKESSA-----IDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPI-PEKVVYR--TKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 + P PT + +V+ S P +P++ WTEH A DGRTYYYN TKQSTWEKPDELK+ AE +LS+CPWKE+KS+ GK YYYN+ T++S W KP +L E E L D S + ++ +T P E A I E ++A+ P + + KD S+ + + + + PEK Y TKEE ++ ++ +LK+ VP NATWE A+KMI DPRY L K ++KKQ FN YK QR+K+E+EE RLR K+AKE L++FL H K++S YRKA+ + + W+ VPERDR+EIY+D L + K+EKE+AK LRKRN++ ILD M N++F+TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEKD EEKER + R +R QRKNRE+F VF+DELHE G+L S+S W +LY IS D RF ML Q GSTPLDLFKFYV ELK+RF EK+I+K+I++DRNF+ + NT+ E F +I D+R TLD GN+++ + SL+E+AE+ E++R KE ++ ++ E FK MLK +++ W+EV ++ F + +ES+R++ +KE++ I Sbjct: 113 AQPAPT--VAKATVEESSPAQDIPKKKSLWTEHKAPDGRTYYYNSETKQSTWEKPDELKSKAEFLLSQCPWKEYKSDTGKSYYYNSQTKESRWTKPKDLDELEALIKQKEDVSAEQETQSAISSPSTAVSSDTEMTPTEEPAVAQPSIPEPVEASEVEAPQE-ETLQCQKDISNSEPLRIEDGVKVEPEKRSYNWSTKEEAKQFFKELLKDKGVPSNATWEQAMKMIINDPRYSALPKLSEKKQAFNAYKAQREKEEKEETRLRAKEAKEKLQRFLEQHEKMTSTTRYRKAEQMFGEQEVWSVVPERDRKEIYDDVLFFLAKKEKEQAKQLRKRNVQALKNILDNMTNVSFQTTWSEAQQYLMDNPMFAEDEELQNMDKEDALICFEEHIRALEKDEAEEKERTRLRERRQQRKNRESFQVFLDELHETGQLHSMSTWMELYPSISTDSRFANMLGQTGSTPLDLFKFYVEELKARFHDEKKIIKDIIKDRNFSVEVNTTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARERERGKEEARKIRRKEAAFKSMLKQSVPPLETDSIWDEVRERFVGDPAFDQITVESERIRLFKEFVHAI 714
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Xenopus
Match: PRPF40B (pre-mRNA processing factor 40 homolog B [Source:NCBI gene;Acc:100493450]) HSP 1 Score: 486.108 bits (1250), Expect = 2.919e-158 Identity = 291/605 (48.10%), Postives = 402/605 (66.45%), Query Frame = 1 Query: 124 SYPVPTSYLPPTSVQNSLPT--LPEQA--WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINEN-----------NTTDKPKESSA-----IDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPI-PEKVVYR--TKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 + P PT + +V+ S P +P++ WTEH A DGRTYYYN TKQSTWEKPDELK+ AE +LS+CPWKE+KS+ GK YYYN+ T++S W KP +L E E L D S + ++ +T P E A I E ++A+ P + + KD S+ + + + + PEK Y TKEE ++ ++ +LK+ VP NATWE A+KMI DPRY L K ++KKQ FN YK QR+K+E+EE RLR K+AKE L++FL H K++S YRKA+ + + W+ VPERDR+EIY+D L + K+EKE+AK LRKRN++ ILD M N++F+TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEKD EEKER + R +R QRKNRE+F VF+DELHE G+L S+S W +LY IS D RF ML Q GSTPLDLFKFYV ELK+RF EK+I+K+I++DRNF+ + NT+ E F +I D+R TLD GN+++ + SL+E+AE+ E++R KE ++ ++ E FK MLK +++ W+EV ++ F + +ES+R++ +KE++ I Sbjct: 121 AQPAPT--VAKATVEESSPAQDIPKKKSLWTEHKAPDGRTYYYNSETKQSTWEKPDELKSKAEFLLSQCPWKEYKSDTGKSYYYNSQTKESRWTKPKDLDELEALIKQKEDVSAEQETQSAISSPSTAVSSDTEMTPTEEPAVAQPSIPEPVEASEVEAPQE-ETLQCQKDISNSEPLRIEDGVKVEPEKRSYNWSTKEEAKQFFKELLKDKGVPSNATWEQAMKMIINDPRYSALPKLSEKKQAFNAYKAQREKEEKEETRLRAKEAKEKLQRFLEQHEKMTSTTRYRKAEQMFGEQEVWSVVPERDRKEIYDDVLFFLAKKEKEQAKQLRKRNVQALKNILDNMTNVSFQTTWSEAQQYLMDNPMFAEDEELQNMDKEDALICFEEHIRALEKDEAEEKERTRLRERRQQRKNRESFQVFLDELHETGQLHSMSTWMELYPSISTDSRFANMLGQTGSTPLDLFKFYVEELKARFHDEKKIIKDIIKDRNFSVEVNTTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARERERGKEEARKIRRKEAAFKSMLKQSVPPLETDSIWDEVRERFVGDPAFDQITVESERIRLFKEFVHAI 722
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Xenopus
Match: PRPF40B (pre-mRNA processing factor 40 homolog B [Source:NCBI gene;Acc:100493450]) HSP 1 Score: 481.1 bits (1237), Expect = 5.138e-158 Identity = 289/611 (47.30%), Postives = 405/611 (66.28%), Query Frame = 1 Query: 106 LPPLTHSYPVPTSYLPPTSVQNSLPTLPE--------QAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAE-----------KLAYGNNDTSDNEINENNTTDKPKESS-AIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPI-PEKVVYR--TKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 +PPL +PT LP + ++ ++ + WTEH A DGRTYYYN TKQSTWEKPDELK+ AE +LS+CPWKE+KS+ GK YYYN+ T++S W KP +L E E + A + T+ + E T++P + +I E ++A+ P + + KD S+ + + + + PEK Y TKEE ++ ++ +LK+ VP NATWE A+KMI DPRY L K ++KKQ FN YK QR+K+E+EE RLR K+AKE L++FL H K++S YRKA+ + + W+ VPERDR+EIY+D L + K+EKE+AK LRKRN++ ILD M N++F+TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEKD EEKER + R +R QRKNRE+F VF+DELHE G+L S+S W +LY IS D RF ML Q GSTPLDLFKFYV ELK+RF EK+I+K+I++DRNF+ + NT+ E F +I D+R TLD GN+++ + SL+E+AE+ E++R KE ++ ++ E FK MLK +++ W+EV ++ F + +ES+R++ +KE++ I Sbjct: 63 VPPL-----MPTMMLPAVTSSSTTVSICDITSYSCFKSLWTEHKAPDGRTYYYNSETKQSTWEKPDELKSKAEFLLSQCPWKEYKSDTGKSYYYNSQTKESRWTKPKDLDELEGKGARLEEEKTQSAISSPSTAVSSDTEMTPTEEPAVAQPSIPEPVEASEVEAPQE-ETLQCQKDISNSEPLRIEDGVKVEPEKRSYNWSTKEEAKQFFKELLKDKGVPSNATWEQAMKMIINDPRYSALPKLSEKKQAFNAYKAQREKEEKEETRLRAKEAKEKLQRFLEQHEKMTSTTRYRKAEQMFGEQEVWSVVPERDRKEIYDDVLFFLAKKEKEQAKQLRKRNVQALKNILDNMTNVSFQTTWSEAQQYLMDNPMFAEDEELQNMDKEDALICFEEHIRALEKDEAEEKERTRLRERRQQRKNRESFQVFLDELHETGQLHSMSTWMELYPSISTDSRFANMLGQTGSTPLDLFKFYVEELKARFHDEKKIIKDIIKDRNFSVEVNTTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARERERGKEEARKIRRKEAAFKSMLKQSVPPLETDSIWDEVRERFVGDPAFDQITVESERIRLFKEFVHAI 667
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Xenopus
Match: PRPF40B (pre-mRNA processing factor 40 homolog B [Source:NCBI gene;Acc:100493450]) HSP 1 Score: 484.182 bits (1245), Expect = 5.500e-157 Identity = 291/605 (48.10%), Postives = 402/605 (66.45%), Query Frame = 1 Query: 124 SYPVPTSYLPPTSVQNSLPT--LPEQA--WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINEN-----------NTTDKPKESSA-----IDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPI-PEKVVYR--TKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 + P PT + +V+ S P +P++ WTEH A DGRTYYYN TKQSTWEKPDELK+ AE +LS+CPWKE+KS+ GK YYYN+ T++S W KP +L E E L D S + ++ +T P E A I E ++A+ P + + KD S+ + + + + PEK Y TKEE ++ ++ +LK+ VP NATWE A+KMI DPRY L K ++KKQ FN YK QR+K+E+EE RLR K+AKE L++FL H K++S YRKA+ + + W+ VPERDR+EIY+D L + K+EKE+AK LRKRN++ ILD M N++F+TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEKD EEKER + R +R QRKNRE+F VF+DELHE G+L S+S W +LY IS D RF ML Q GSTPLDLFKFYV ELK+RF EK+I+K+I++DRNF+ + NT+ E F +I D+R TLD GN+++ + SL+E+AE+ E++R KE ++ ++ E FK MLK +++ W+EV ++ F + +ES+R++ +KE++ I Sbjct: 161 AQPAPT--VAKATVEESSPAQDIPKKKSLWTEHKAPDGRTYYYNSETKQSTWEKPDELKSKAEFLLSQCPWKEYKSDTGKSYYYNSQTKESRWTKPKDLDELEALIKQKEDVSAEQETQSAISSPSTAVSSDTEMTPTEEPAVAQPSIPEPVEASEVEAPQE-ETLQCQKDISNSEPLRIEDGVKVEPEKRSYNWSTKEEAKQFFKELLKDKGVPSNATWEQAMKMIINDPRYSALPKLSEKKQAFNAYKAQREKEEKEETRLRAKEAKEKLQRFLEQHEKMTSTTRYRKAEQMFGEQEVWSVVPERDRKEIYDDVLFFLAKKEKEQAKQLRKRNVQALKNILDNMTNVSFQTTWSEAQQYLMDNPMFAEDEELQNMDKEDALICFEEHIRALEKDEAEEKERTRLRERRQQRKNRESFQVFLDELHETGQLHSMSTWMELYPSISTDSRFANMLGQTGSTPLDLFKFYVEELKARFHDEKKIIKDIIKDRNFSVEVNTTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARERERGKEEARKIRRKEAAFKSMLKQSVPPLETDSIWDEVRERFVGDPAFDQITVESERIRLFKEFVHAI 762
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Xenopus
Match: PRPF40B (pre-mRNA processing factor 40 homolog B [Source:NCBI gene;Acc:100493450]) HSP 1 Score: 478.019 bits (1229), Expect = 7.200e-157 Identity = 286/578 (49.48%), Postives = 391/578 (67.65%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPEL---------AEAEKLAYGNNDTSDNEINENNTTDKPKESS-AIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPI---------PEKVVYR--TKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 WTEH A DGRTYYYN TKQSTWEKPDELK+ AE +LS+CPWKE+KS+ GK YYYN+ T++S W KP +L E EK A + T+ + E T++P + +I E ++A+ P + + KD S + +PA P+ PEK Y TKEE ++ ++ +LK+ VP NATWE A+KMI DPRY L K ++KKQ FN YK QR+K+E+EE RLR K+AKE L++FL H K++S YRKA+ + + W+ VPERDR+EIY+D L + K+EKE+AK LRKRN++ ILD M N++F+TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEKD EEKER + R +R QRKNRE+F VF+DELHE G+L S+S W +LY IS D RF ML Q GSTPLDLFKFYV ELK+RF EK+I+K+I++DRNF+ + NT+ E F +I D+R TLD GN+++ + SL+E+AE+ E++R KE ++ ++ E FK MLK +++ W+EV ++ F + +ES+R++ +KE++ I Sbjct: 80 WTEHKAPDGRTYYYNSETKQSTWEKPDELKSKAEFLLSQCPWKEYKSDTGKSYYYNSQTKESRWTKPKDLDELEGKGARLEEEKSAISSPSTAVSSDTEMTPTEEPAVAQPSIPEPVEASEVEAPQE-ETLQCQKDIS--NRYHPATFEPLRIEDGVKVEPEKRSYNWSTKEEAKQFFKELLKDKGVPSNATWEQAMKMIINDPRYSALPKLSEKKQAFNAYKAQREKEEKEETRLRAKEAKEKLQRFLEQHEKMTSTTRYRKAEQMFGEQEVWSVVPERDRKEIYDDVLFFLAKKEKEQAKQLRKRNVQALKNILDNMTNVSFQTTWSEAQQYLMDNPMFAEDEELQNMDKEDALICFEEHIRALEKDEAEEKERTRLRERRQQRKNRESFQVFLDELHETGQLHSMSTWMELYPSISTDSRFANMLGQTGSTPLDLFKFYVEELKARFHDEKKIIKDIIKDRNFSVEVNTTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARERERGKEEARKIRRKEAAFKSMLKQSVPPLETDSIWDEVRERFVGDPAFDQITVESERIRLFKEFVHAI 654
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Mouse
Match: Prpf40a (pre-mRNA processing factor 40A [Source:MGI Symbol;Acc:MGI:1860512]) HSP 1 Score: 373.629 bits (958), Expect = 1.706e-115 Identity = 214/448 (47.77%), Postives = 302/448 (67.41%), Query Frame = 1 Query: 517 IKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHD--IKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYL 1854 I + G P+ + V+ E+E PA + TKEE ++ ++ +LKE VP NA+WE A+KMI DPRY L K ++KKQ FN YK Q +K+E+EEAR + K+AKE ++FL NH K++S Y+KA+ + + W A+ ERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T+ TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EEEK++ R +R QRKNRE+F +F+DELHE G+L S+S W +LY IS D RF ML QPGST LDLFKFYV +LK+R+ EK+I+K+IL+D+ F + NT+ E F+ +I +R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK I+ WE++ ++ F+ + LES+R + +K+++ Sbjct: 309 ISSNTGEEPAKQETVSDFTPKKEEEESQPAKKT-----YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFM 751 HSP 2 Score: 125.561 bits (314), Expect = 6.311e-29 Identity = 101/349 (28.94%), Postives = 175/349 (50.14%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENN--TTDKPKESSAIDEAIKATLGSMPSS----------------------SDKVNSHKDSSSEDEVNPAHNIPI---PEKV-VYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEAR----LRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLE 1146 WTEH + DGRTYYYN TKQSTWEKPD+LKTPAE++LS+CPWKE+KS+ GK YYYN+ T++S W KP EL + E Y N + I ++N K +ESS +E A+ +P++ + + ++S N ++P+ PE + T + E V +E N TA++ +SGD + K++ + + +++++E + A+ K+ + K L+ ++ S + +A ++ + P ++A+ + ++++ + +Q K EKEEA+ K + F L+ +T T + +A+++ E Sbjct: 104 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLE--GYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVATAVDNENTVTVSTEEQAQLANT---TAIQDLSGDIS-SNTGEEPAKQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGE 446
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Mouse
Match: Prpf40a (pre-mRNA processing factor 40A [Source:MGI Symbol;Acc:MGI:1860512]) HSP 1 Score: 373.244 bits (957), Expect = 3.013e-115 Identity = 214/448 (47.77%), Postives = 303/448 (67.63%), Query Frame = 1 Query: 517 IKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLK--SHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYL 1854 I + G P+ + V+ E+E PA + TKEE ++ ++ +LKE VP NA+WE A+KMI DPRY L K ++KKQ FN YK Q +K+E+EEAR + K+AKE ++FL NH K++S Y+KA+ + + W A+ ERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T+ TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EEEK++ R +R QRKNRE+F +F+DELHE G+L S+S W +LY IS D RF ML QPGST LDLFKFYV +LK+R+ EK+I+K+IL+D+ F + NT+ E F+ +I +R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK + I+ WE++ ++ F+ + LES+R + +K+++ Sbjct: 324 ISSNTGEEPAKQETVSDFTPKKEEEESQPAKKT-----YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFM 766 HSP 2 Score: 125.561 bits (314), Expect = 6.447e-29 Identity = 101/349 (28.94%), Postives = 175/349 (50.14%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENN--TTDKPKESSAIDEAIKATLGSMPSS----------------------SDKVNSHKDSSSEDEVNPAHNIPI---PEKV-VYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEAR----LRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLE 1146 WTEH + DGRTYYYN TKQSTWEKPD+LKTPAE++LS+CPWKE+KS+ GK YYYN+ T++S W KP EL + E Y N + I ++N K +ESS +E A+ +P++ + + ++S N ++P+ PE + T + E V +E N TA++ +SGD + K++ + + +++++E + A+ K+ + K L+ ++ S + +A ++ + P ++A+ + ++++ + +Q K EKEEA+ K + F L+ +T T + +A+++ E Sbjct: 119 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLE--GYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVATAVDNENTVTVSTEEQAQLANT---TAIQDLSGDIS-SNTGEEPAKQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGE 461
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Mouse
Match: Prpf40a (pre-mRNA processing factor 40A [Source:MGI Symbol;Acc:MGI:1860512]) HSP 1 Score: 373.629 bits (958), Expect = 4.363e-115 Identity = 214/451 (47.45%), Postives = 304/451 (67.41%), Query Frame = 1 Query: 517 IKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLK--SHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 I + G P+ + V+ E+E PA + TKEE ++ ++ +LKE VP NA+WE A+KMI DPRY L K ++KKQ FN YK Q +K+E+EEAR + K+AKE ++FL NH K++S Y+KA+ + + W A+ ERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T+ TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EEEK++ R +R QRKNRE+F +F+DELHE G+L S+S W +LY IS D RF ML QPGST LDLFKFYV +LK+R+ EK+I+K+IL+D+ F + NT+ E F+ +I +R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK + I+ WE++ ++ F+ + LES+R + +K+++ + Sbjct: 351 ISSNTGEEPAKQETVSDFTPKKEEEESQPAKKT-----YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVL 796 HSP 2 Score: 125.561 bits (314), Expect = 5.240e-29 Identity = 101/349 (28.94%), Postives = 175/349 (50.14%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENN--TTDKPKESSAIDEAIKATLGSMPSS----------------------SDKVNSHKDSSSEDEVNPAHNIPI---PEKV-VYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEAR----LRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLE 1146 WTEH + DGRTYYYN TKQSTWEKPD+LKTPAE++LS+CPWKE+KS+ GK YYYN+ T++S W KP EL + E Y N + I ++N K +ESS +E A+ +P++ + + ++S N ++P+ PE + T + E V +E N TA++ +SGD + K++ + + +++++E + A+ K+ + K L+ ++ S + +A ++ + P ++A+ + ++++ + +Q K EKEEA+ K + F L+ +T T + +A+++ E Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLE--GYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVATAVDNENTVTVSTEEQAQLANT---TAIQDLSGDIS-SNTGEEPAKQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGE 488
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Mouse
Match: Prpf40b (pre-mRNA processing factor 40B [Source:MGI Symbol;Acc:MGI:1925583]) HSP 1 Score: 365.925 bits (938), Expect = 3.467e-113 Identity = 207/447 (46.31%), Postives = 304/447 (68.01%), Query Frame = 1 Query: 631 VVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYL---------LTIRSRSRSKFSQEIKRKRKHRSNSKES 1938 + + +E+ ++ ++ +L++ VP NA+WE A+KM+ DPRY L K ++KKQ FN YK QR+K+E+EEARLR K+AK+ L+ FL H +++S YR+A+ D W VPER+R+E+Y+D L + K+EKE+AK LR+RNI+ ILD M ++ F+TTW +AQ+ L++NP F +D+ LQ+MDKEDALICFEEHIR LE++ EEE+ER + R +R QRKNREAF F+DELHE G+L S+S W +LY +S D RF ML QPGSTPLDLFKFYV ELK+RF EK+I+K+IL+DR F + NT+ E F VI D+R LD GN+++ + SL+E+AE+ E++R KE ++ ++ E F+ ML+ ++ +WEEV ++ F+ + LES+R++ ++E+L L + R + ++ RKR H + ES Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERERKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLETECQHLHTKGRKHGRKGKKHHRKRSHSPSGSES 717 HSP 2 Score: 105.145 bits (261), Expect = 1.317e-22 Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 112 PLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL 426 P+T + P + ++V + P P W+EH+A DGR YYYN KQS WEKP LK+ AE +LS+CPWKE+KS+ GK YYYN +Q+S W +P +L + E L Sbjct: 72 PVT-AATAPGADTASSAVAGTGP--PRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEAL 173
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Mouse
Match: Prpf40b (pre-mRNA processing factor 40B [Source:MGI Symbol;Acc:MGI:1925583]) HSP 1 Score: 365.155 bits (936), Expect = 8.449e-113 Identity = 207/448 (46.21%), Postives = 304/448 (67.86%), Query Frame = 1 Query: 631 VVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYL----------LTIRSRSRSKFSQEIKRKRKHRSNSKES 1938 + + +E+ ++ ++ +L++ VP NA+WE A+KM+ DPRY L K ++KKQ FN YK QR+K+E+EEARLR K+AK+ L+ FL H +++S YR+A+ D W VPER+R+E+Y+D L + K+EKE+AK LR+RNI+ ILD M ++ F+TTW +AQ+ L++NP F +D+ LQ+MDKEDALICFEEHIR LE++ EEE+ER + R +R QRKNREAF F+DELHE G+L S+S W +LY +S D RF ML QPGSTPLDLFKFYV ELK+RF EK+I+K+IL+DR F + NT+ E F VI D+R LD GN+++ + SL+E+AE+ E++R KE ++ ++ E F+ ML+ ++ +WEEV ++ F+ + LES+R++ ++E+L L + R + ++ RKR H + ES Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERERKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKHGRKGKKHHRKRSHSPSGSES 718 HSP 2 Score: 105.145 bits (261), Expect = 1.143e-22 Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 112 PLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL 426 P+T + P + ++V + P P W+EH+A DGR YYYN KQS WEKP LK+ AE +LS+CPWKE+KS+ GK YYYN +Q+S W +P +L + E L Sbjct: 72 PVT-AATAPGADTASSAVAGTGP--PRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEAL 173
BLAST of Pre-mRNA-processing factor 40 vs. UniProt/SwissProt
Match: sp|P34600|YO61_CAEEL (WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans OX=6239 GN=ZK1098.1 PE=1 SV=2) HSP 1 Score: 392.504 bits (1007), Expect = 6.792e-124 Identity = 242/616 (39.29%), Postives = 361/616 (58.60%), Query Frame = 1 Query: 91 NYQFTLPPLTHSYPVPTSYLPPTSV---QNSLPTLP--------------------EQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECP----WKEFKSEQGKIYYYNTVTQQSVWQKPP--ELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEY 1851 N +F +PP+ VP +P SV + PT P E W+ H + G YY+N +TKQ++W KPD LKTP E+ S P WKEF S+ GK YYYNT+T+++ W KP E+ + E+ T D + + K S +D+A+KATL SMP+ ++ S DEV ++ R E E R + + N W+ AVK I DPR++ L K ++KKQ+FN +K QR K+ER+E RL IKK+KEDLEKFL H K+ ++ Y+KA + S P W AV + DR+EI+ D + + +R+KE+ + RKR+I F+ +L M +T+KTTW +AQRIL ENP+F E +DL MDKEDAL FE+HI+ EK+H+EEKE+E++RL+R QRK RE + + ++ LH++G+LTS+S+W L+ IIS D RF ML QPGS+PLDLFKF+V +LK ++++++R++KEIL ++ T F + E+G +D GN+++ Y SLIE+AES K KE L+++++ E F+ +LK H++ W + K+ + + +E + +R + Y Sbjct: 25 NQRFGMPPVGSIAQVPLLQMPTHSVVAPHVAAPTRPSPMLVPPGMGIDESHSSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERSTSGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAATVDT-VALAAAVQQKKAESDLDKAMKATLASMPNVPLPSEKKEEESVNDEV----------ELKKRQSERFRELLRDKYNDGKITTNCNWDQAVKWIQNDPRFRILNKVSEKKQLFNAWKVQRGKEERDEKRLAIKKSKEDLEKFLQEHPKMKESLKYQKASDIFSKEPLWIAVNDEDRKEIFRDCIDFVARRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQFAERKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEKRLRRQQRKVREEYRLLLESLHKRGELTSMSLWTSLFPIISTDTRFELMLFQPGSSPLDLFKFFVEDLKEQYTEDRRLIKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMKLCYNSLIEKAESKAKDEEKESLRRKRRLESEFRNLLKEHNVDKDSEWTVIKPKIEKDKAYLAMENDDERETAFNHY 629
BLAST of Pre-mRNA-processing factor 40 vs. UniProt/SwissProt
Match: sp|Q9R1C7|PR40A_MOUSE (Pre-mRNA-processing factor 40 homolog A OS=Mus musculus OX=10090 GN=Prpf40a PE=1 SV=1) HSP 1 Score: 373.629 bits (958), Expect = 3.052e-114 Identity = 214/451 (47.45%), Postives = 304/451 (67.41%), Query Frame = 1 Query: 517 IKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLK--SHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 I + G P+ + V+ E+E PA + TKEE ++ ++ +LKE VP NA+WE A+KMI DPRY L K ++KKQ FN YK Q +K+E+EEAR + K+AKE ++FL NH K++S Y+KA+ + + W A+ ERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T+ TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EEEK++ R +R QRKNRE+F +F+DELHE G+L S+S W +LY IS D RF ML QPGST LDLFKFYV +LK+R+ EK+I+K+IL+D+ F + NT+ E F+ +I +R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK + I+ WE++ ++ F+ + LES+R + +K+++ + Sbjct: 351 ISSNTGEEPAKQETVSDFTPKKEEEESQPAKKT-----YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVL 796 HSP 2 Score: 125.561 bits (314), Expect = 3.665e-28 Identity = 101/349 (28.94%), Postives = 175/349 (50.14%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENN--TTDKPKESSAIDEAIKATLGSMPSS----------------------SDKVNSHKDSSSEDEVNPAHNIPI---PEKV-VYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEAR----LRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLE 1146 WTEH + DGRTYYYN TKQSTWEKPD+LKTPAE++LS+CPWKE+KS+ GK YYYN+ T++S W KP EL + E Y N + I ++N K +ESS +E A+ +P++ + + ++S N ++P+ PE + T + E V +E N TA++ +SGD + K++ + + +++++E + A+ K+ + K L+ ++ S + +A ++ + P ++A+ + ++++ + +Q K EKEEA+ K + F L+ +T T + +A+++ E Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLE--GYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVATAVDNENTVTVSTEEQAQLANT---TAIQDLSGDIS-SNTGEEPAKQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGE 488
BLAST of Pre-mRNA-processing factor 40 vs. UniProt/SwissProt
Match: sp|Q80W14|PR40B_MOUSE (Pre-mRNA-processing factor 40 homolog B OS=Mus musculus OX=10090 GN=Prpf40b PE=1 SV=2) HSP 1 Score: 370.163 bits (949), Expect = 9.835e-114 Identity = 207/448 (46.21%), Postives = 303/448 (67.63%), Query Frame = 1 Query: 631 VVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYL----------LTIRSRSRSKFSQEIKRKRKHRSNSKES 1938 + + +E+ ++ ++ +L++ VP NA+WE A+KM+ DPRY L K ++KKQ FN YK QR+K+E+EEARLR K+AK+ L+ FL H +++S YR+A+ D W VPER+R+E+Y+D L + K+EKE+AK LR+RNI+ ILD M ++ F+TTW +AQ+ L++NP F +D+ LQ+MDKEDALICFEEHIR LE++ EEE+ER + R +R QRKNREAF F+DELHE G+L S+S W +LY +S D RF ML QPGSTPLDLFKFYV ELK+RF EK+I+K+IL+DR F + NT+ E F VI D+R LD GN+++ + SL+E+AE+ E +R KE ++ ++ E F+ ML+ ++ +WEEV ++ F+ + LES+R++ ++E+L L + R + ++ RKR H + ES Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERERKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEARETEREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKHGRKGKKHHRKRSHSPSGSES 718 HSP 2 Score: 105.145 bits (261), Expect = 7.857e-22 Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 112 PLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL 426 P+T + P + ++V + P P W+EH+A DGR YYYN KQS WEKP LK+ AE +LS+CPWKE+KS+ GK YYYN +Q+S W +P +L + E L Sbjct: 72 PVT-AATAPGADTASSAVAGTGP--PRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEAL 173
BLAST of Pre-mRNA-processing factor 40 vs. UniProt/SwissProt
Match: sp|O75400|PR40A_HUMAN (Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens OX=9606 GN=PRPF40A PE=1 SV=2) HSP 1 Score: 370.548 bits (950), Expect = 3.557e-113 Identity = 207/418 (49.52%), Postives = 293/418 (70.10%), Query Frame = 1 Query: 616 PIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLK--SHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 P + + TKEE ++ ++ +LKE VP NA+WE A+KMI DPRY L K ++KKQ FN YK Q +K+E+EEAR + K+AKE ++FL NH K++S Y+KA+ + + W A+ ERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T+ TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EEEK++ R +R QRKNRE+F +F+DELHE G+L S+S W +LY IS D RF ML QPGST LDLFKFYV +LK+R+ EK+I+K+IL+D+ F + NT+ E F+ +I +R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK + I+ WE++ ++ F+ + LES+R + +K+++ + Sbjct: 383 PAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVL 800 HSP 2 Score: 122.865 bits (307), Expect = 3.217e-27 Identity = 73/168 (43.45%), Postives = 101/168 (60.12%), Query Frame = 1 Query: 58 ILNGIEIS-MSN-NYQFTLPPLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENN--TTDKPKESSAIDEAIKATLGSMPSS 549 ++ G+ +S MS + Q LPP +S V S S+ WTEH + DGRTYYYN TKQSTWEKPD+LKTPAE++LS+CPWKE+KS+ GK YYYN+ T++S W KP EL + E Y N + + I ++N K +ESS +E + +P++ Sbjct: 107 VMPGMMMSHMSQASMQPALPPGVNSMDVAAGT---ASGAKSM-------WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLE--GYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTT 262
BLAST of Pre-mRNA-processing factor 40 vs. UniProt/SwissProt
Match: sp|Q6NWY9|PR40B_HUMAN (Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens OX=9606 GN=PRPF40B PE=1 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 1.246e-110 Identity = 205/444 (46.17%), Postives = 302/444 (68.02%), Query Frame = 1 Query: 631 VVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSH--DIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKESVSSREH 1956 + + +E+ ++ ++ +L++ VP NA+WE A+KM+ DPRY L K ++KKQ FN YK QR+K+E+EEARLR K+AK+ L+ FL H +++S YR+A+ + W VPERDR+E+Y+D L + K+EKE+AK LR+RNI+ ILD M ++ F+TTW +AQ+ L++NP F +D LQ+MDKEDALICFEEHIR LE++ EEE+ER + R +R QRKNREAF F+DELHE G+L S+S W +LY +S D RF ML QPGSTPLDLFKFYV ELK+RF EK+I+K+IL+DR F + NT+ E F VI D+R LD GN+++ + SL+E+AE+ E++R KE ++ ++ E F+ ML+ ++ +WEEV ++ F+ + LES+R++ ++E+L + +++ + RKH K+ R H Sbjct: 271 LSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVL---EQTECQHLHTKGRKHGRKGKKHHHKRSH 711 HSP 2 Score: 102.834 bits (255), Expect = 4.813e-21 Identity = 49/105 (46.67%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 112 PLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKL 426 P+T + P + ++V + P P W+EH+A DGR YYYN KQS WEKP LK+ AE +LS+CPWKE+KS+ GK YYYN +++S W +P +L + E L Sbjct: 72 PVT-AATAPGADTASSAVAGTGP--PRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEVL 173
BLAST of Pre-mRNA-processing factor 40 vs. TrEMBL
Match: A0A4Z2DGA9 (Pre-mRNA-processing factor 40 OS=Schistosoma japonicum OX=6182 GN=EWB00_001260 PE=4 SV=1) HSP 1 Score: 576.63 bits (1485), Expect = 0.000e+0 Identity = 327/651 (50.23%), Postives = 437/651 (67.13%), Query Frame = 1 Query: 109 PPLTHSYPVPTSYL-PPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNE----------------INENNTTDKPKESSAIDEAIKATLGS------------MPSSSDKV-NSHKDSSSEDEVNPAHNIP--------IPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHD-IKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKESVS 1944 P H+ VPTS P TSV W EH + DGR YYYN T+Q+TWEKP ELKT EKIL CPWKEFKSE GK YY+N T+QSVW KP EL EAE A T + + KP E S I+ A+KATL S +P +KV +S KD S +++ P N+ +PE Y+T+ E+ EG R + ++ NVPG ATWE A+K+ISGDPRY L+ +N+KKQIFN YKTQR K+EREE R+RIK+AKEDLEK+L+ +KL S + YR+ D LLSD EWT VP+RDRREI++D + ++GKRE+EEAK+LRKRNI++FNEIL M +LT++TTW EAQ++LL+N RF D DLQ++DKEDAL+CFEEHI +LE++H+E+KERE+RR KR QRKNREAF V +DELHE+ LTS+S+WKDLY II++D+RF+KML+Q GSTPLDLFKFYV LK+RF EK+I+KEIL+ + + D + S E F +I DER + +D GN+RM Y SL+E+A+ E++R ++ ++ +K E +F +ML + I+S+ SWEEV +KL + FK + LES+R++ +KEY+++I + + RK KHR SV+ Sbjct: 16 PGYAHATFVPTSIPNPVTSVTQLSAAQVNAGWVEHHSHDGRKYYYNTFTQQTTWEKPQELKTQREKILCNCPWKEFKSENGKPYYFNENTKQSVWVKPQELIEAENQAAACTPTLNTAVPEPPPIIPPVTPCTPATPKDDISKPPEPSEIERAMKATLASFETSDTGPSSMSIPLPPEKVYDSDKDESEDEKPTPNVNVTTFSPNTQTVPE---YKTRGEMAEGLRRLFRDCNVPGGATWEQALKLISGDPRYSILRTFNEKKQIFNVYKTQRLKEEREEQRIRIKRAKEDLEKYLLKCNKLHSTMSYRRVDQLLSDTKEWTDVPDRDRREIFDDVMQEVGKREREEAKILRKRNIRVFNEILGEMLDLTYRTTWSEAQQMLLDNTRFTGDVDLQNLDKEDALVCFEEHICMLEQEHDEDKERERRRQKREQRKNREAFIVLLDELHEQKLLTSMSLWKDLYHIINKDDRFHKMLAQRGSTPLDLFKFYVEALKARFPAEKKIIKEILKYSSTSIDLSVSYEDFCSIISADERSKGIDSGNMRMTYDSLLEKAQGRERERQRDDARRMRKLEQHFCEMLATSSFIQSNTSWEEVREKLSDHPAFKGMSLESERIRLFKEYIMSIDNSLNEDAHR--SRKDKHRRERSPSVN 661
BLAST of Pre-mRNA-processing factor 40 vs. TrEMBL
Match: A0A504YY66 (Pre-mRNA-processing factor A OS=Fasciola gigantica OX=46835 GN=FGIG_08405 PE=4 SV=1) HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0 Identity = 321/657 (48.86%), Postives = 435/657 (66.21%), Query Frame = 1 Query: 109 PPLTHSYPVPTSYLP----PTSVQNSLPTLPEQA-WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYG---------------NNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNS--------------------HKDSSSEDEVNPAHNIPIPEKVV---YRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHD-IKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKESVSS 1947 P T ++ P Y P P VQ ++P W EH + DGR YYYN +T+Q+TWEKP ELK+ E ILS CPWKEFKSE GK YY+N T+QSVW KP EL EAE+ A +T KP E SAI++A+ ATL S SS K +S K S + N + P +V Y+T+ E+ EG R + ++ NVPG +TWE AVK+IS DPRY LK + +KKQIFN YKTQR K+EREE RLR K+AKEDLE+FL+ H K+ S + YR+ D LLSD EW VP++DRRE+++D + ++ KRE+EEAKVLRKRNIK+FNEIL MP LT++TTW EAQ++LL+N RF D +LQS+DKEDAL+CFEEHI +LE++H+EEKERE+R+ KR+QRKNREAF V +DELHE+ L+S SMWKDLY IISRDERF+KML+Q GSTPLDLFKFYV LK+R+ EK+++KEIL+D F D +TS E F VI DER + +D GN+RM + SL+E+A+ E++R ++ ++ +K E NF ML S + I+ SW+EV +K + F+ + LES+R++ +K+Y++++ S +++ S++ +R RK + ++S S+ Sbjct: 5 PAFTGAHTFPHPYAPMAYLPAGVQAAIPVAATAGSWAEHTSHDGRKYYYNTLTQQTTWEKPPELKSTRELILSSCPWKEFKSENGKPYYFNEQTRQSVWVKPQELMEAEQQAEALAPMPSPAQEKHTPLQLNTPCTPATPKEEFGKPPEPSAIEKAMLATLASYDISSSKTDSIPIPPPPPNEMPTEAKSEQLEKTDSEDKSSNVSRRTGSPAPLVMHEYKTRGEMAEGLRRLFRDCNVPGGSTWEQAVKLISADPRYNLLKSFTEKKQIFNVYKTQRLKEEREEQRLRAKQAKEDLERFLLRHPKVHSTMSYRRVDQLLSDAQEWKVVPDKDRRELFDDVMQEISKREREEAKVLRKRNIKVFNEILSDMPKLTYRTTWSEAQQMLLDNSRFTGDVELQSLDKEDALVCFEEHICMLEQEHDEEKERERRKQKRIQRKNREAFIVLLDELHEQKLLSSTSMWKDLYSIISRDERFHKMLAQRGSTPLDLFKFYVEALKTRYPAEKKLIKEILKDIGFNVDLSTSFEDFCTVIGRDERSKGVDDGNLRMTFDSLLEKAKGRERERQRDDARRLRKLEQNFCGMLSSANFIRPDTSWDEVREKFNDHPAFRALSLESERIRVFKDYIISMDSAAQAD-SEKSRRNRKDKRRQEDSESA 660
BLAST of Pre-mRNA-processing factor 40 vs. TrEMBL
Match: A0A4E0R113 (Pre-mRNA-processing factor A OS=Fasciola hepatica OX=6192 GN=D915_008082 PE=4 SV=1) HSP 1 Score: 570.852 bits (1470), Expect = 0.000e+0 Identity = 318/654 (48.62%), Postives = 433/654 (66.21%), Query Frame = 1 Query: 109 PPLTHSYPVPTSYLP----PTSVQNSLPTLPEQA-WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYG---------------NNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNS--------------------HKDSSSEDEVNPAHNIPIPEKVV---YRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHD-IKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKES 1938 P T ++ P Y P P VQ ++P W EH + DGR YYYN +T+Q+TWEKP ELK+ E ILS CPWKEFKSE GK YY+N T+QSVW KP EL EAE+ A +T KP E SAI++A+ ATL S SS K +S K S + N + P +V Y+T+ E+ EG R + ++ NVPG +TWE AVK+IS DPRY LK + +KKQIFN YKTQR K+EREE RLR K+AKEDLE+FL+ H K+ S + YR+ D LLSD EW VP++DRRE+++D + ++ KRE+EEAKVLRKRNIK+FNEIL MP LT++TTW EAQ++LL+N RF D +LQS+DKEDAL+CFEEHI +LE++H+EEKERE+R+ KR+QRKNREAF V +DELHE+ L+S SMWKDLY IISRD+RF+KML+Q GSTPLDLFKFYV LK+R+ EK+++KEIL+D F D +TS E F VI DER + +D GN+RM + SL+E+A+ E++R ++ ++ +K E NF ML S + I+ SW+EV ++ + F+ + LES+R++ +K+Y++++ S +++ S++ +R RK + ++S Sbjct: 5 PAFTGAHTFPHPYAPMAYLPAGVQAAIPVAATAGGWAEHTSHDGRKYYYNTLTQQTTWEKPPELKSTRELILSSCPWKEFKSENGKPYYFNEQTRQSVWVKPQELMEAEQQAEALAPMPSPAQEKHTPLQLNTPCTPATPKEEFGKPPEPSAIEKAMLATLASYDISSSKTDSIPIPPPPPNEMSTEAKSEQLEKTDSEDKSSNVSRRTGSPAPLVMHEYKTRGEMAEGLRRLFRDCNVPGGSTWEQAVKLISADPRYNLLKSFTEKKQIFNVYKTQRLKEEREEQRLRAKQAKEDLERFLLRHPKVHSTMSYRRVDQLLSDAQEWKVVPDKDRRELFDDVMQEISKREREEAKVLRKRNIKVFNEILSDMPKLTYRTTWSEAQQMLLDNSRFTGDVELQSLDKEDALVCFEEHICMLEQEHDEEKERERRKQKRIQRKNREAFIVLLDELHEQKLLSSTSMWKDLYSIISRDDRFHKMLAQRGSTPLDLFKFYVEALKTRYPAEKKLIKEILKDIGFNVDLSTSFEDFCTVIGRDERSKGVDDGNLRMTFDSLLEKAKGRERERQRDDARRLRKLEQNFCGMLSSANFIRPDTSWDEVRERFNDHPAFRALSLESERIRVFKDYIISMDSAAQAD-SEKSRRNRKDKRRQEDS 657
BLAST of Pre-mRNA-processing factor 40 vs. TrEMBL
Match: H2KUZ3 (Pre-mRNA-processing factor 40 OS=Clonorchis sinensis OX=79923 GN=CLF_110840 PE=4 SV=1) HSP 1 Score: 570.081 bits (1468), Expect = 0.000e+0 Identity = 323/661 (48.87%), Postives = 441/661 (66.72%), Query Frame = 1 Query: 109 PPLTHSYPVP---TSYLPPTSVQNSLPTL-PEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDT--SDNEINENNTTD-------------KPKESSAIDEAIKATLGS--MPSSSD---------------KVNSHKDSSSEDEVNPAHNI------PIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHD-IKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRS---KFSQEIKRKRKHRSNSKESVSSRE 1953 PP T ++ P +YLP ++PT+ P W EH + DGR YYYN T+Q+TW+KP ELKT E ILS CPWKEFKSE G++YY+N T+QSVW KP EL +AE A + T SD ++ ++ KP E SAI++A+ ATL S +P+++D N + D +S D A P P + Y+T+ E+ EG R + ++ NVPG+ATWE A+K+IS DPRY LK + +KKQIFN YKTQR K+EREE RLR K+AKEDLE+FL+ H KL S + YRK + LLSD EWT+VP+RDRRE++ED + + KRE++EAKV+RKRNIK+F+EIL MPNLTF+TTW EAQ++LL+NP+F D +LQS+DKEDALICFEEHI +LE++H+EEKER++RR KR QRKNREAF V +DELHE LT+ S+WKDLY II+RDERF+KML+Q GSTPLDLFKFYV LK+R+ E++++KEI++D D +TS E F+ ++ DER + +D GN+RM Y S +E+A+ E++R ++ ++ +K E NF +ML S I + +WEEV F + LES+R++ +KEYL+++ S + + K + K K +H+ ESV RE Sbjct: 5 PPYTATFHHPYAQVAYLPA-----AVPTIAPVSQWIEHTSHDGRKYYYNTATQQTTWDKPQELKTTRELILSSCPWKEFKSENGRLYYFNEQTKQSVWVKPQELIDAENQAESASSTAVSDKKVPASSVLGTPCTPATPKDEPSKPPEPSAIEKAMMATLSSYDLPTTTDSIPIPPPPPTEAPAETPNEYVDRTSADNAGRAGTAGSSGGSPAPHQE-YKTRGEMAEGLRRLFRDCNVPGSATWEQALKLISADPRYSLLKTFTEKKQIFNVYKTQRLKEEREEQRLRAKQAKEDLERFLLRHPKLHSTMSYRKVEQLLSDAREWTSVPDRDRRELFEDVMQLISKRERDEAKVVRKRNIKVFHEILSGMPNLTFRTTWSEAQQMLLDNPKFTGDIELQSLDKEDALICFEEHICMLEQEHDEEKERDRRRQKRQQRKNREAFIVLLDELHENKLLTATSLWKDLYSIINRDERFHKMLAQRGSTPLDLFKFYVEALKARYPAERKLIKEIIKDNGLNIDLSTSFEDFVDLVSKDERSKGIDDGNMRMTYESFLEKAQGRERERQRDDARRMRKLEQNFCEMLCSAKFIGHNTTWEEVRDHFSGHPAFCALTLESERIRLFKEYLISLESAALAESEKSRKGHKEKHRHKREVSESVDKRE 659
BLAST of Pre-mRNA-processing factor 40 vs. TrEMBL
Match: A0A4S2MFX1 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_000233 PE=4 SV=1) HSP 1 Score: 568.155 bits (1463), Expect = 0.000e+0 Identity = 322/660 (48.79%), Postives = 441/660 (66.82%), Query Frame = 1 Query: 109 PPLTHSYPVP---TSYLPPTSVQNSLPTL-PEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDT--SDNEI------------NENNTTDKPKESSAIDEAIKATLGS--MPSSSDKV---------------NSHKDSSSEDEVN------PAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHD-IKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRS---KFSQEIKRKRKHRSNSKESVSSRE 1953 PP T ++ P +YLP ++PT+ P W EH + DGR YYYN T+Q+TWEKP ELKT E ILS CPWKEFKSE G++YY+N T+QSVW KP EL +AE A + T SD ++ + KP E SAI++A+ ATL S +P+++D + N + D ++ D + P P + Y+T+ E+ EG R + ++ NVPG+ATWE A+K+IS DPRY LK + +KKQIFN YKTQR K+EREE RLR K+AKEDLE+FL+ H KL S + YRK + LLSD EWT+VP+RDRRE++ED + + KRE++EAKV+RKRNIK+F+EIL MPNLTF+TTW EAQ++LL+NP+F D +LQS+DKEDALICFEEHI +LE++H+EEKER++RR KR QRKNREAF V +DELHE LT+ S+WKDLY II+RDERF+KML+Q GSTPLDLFKFYV LK+R+ E++++KEI++D D +TS E F+ ++ DER + +D GN+RM Y S +E+A+ E++R ++ ++ +K E NF +ML S I + +WEEV F + LES+R++ +KEYL+++ S + + K + K K +H+ ESV RE Sbjct: 5 PPYTATFHHPYAQVAYLPA-----AVPTIAPVSQWIEHTSHDGRKYYYNTATQQTTWEKPQELKTTRELILSSCPWKEFKSENGRLYYFNEQTKQSVWVKPQELIDAESQAESASSTTVSDKKVPTSVLGTPCTPATPKDEPSKPPEPSAIEKAMMATLSSYDLPTTTDSIPIPPPPPAEAPAETQNEYVDRTNADNAGRVGTASSSGGSPAPHQE-YKTRGEMAEGLRRLFRDCNVPGSATWEQALKLISADPRYSLLKTFTEKKQIFNVYKTQRLKEEREEQRLRAKQAKEDLERFLLRHPKLHSTMSYRKVEQLLSDAREWTSVPDRDRRELFEDVMQLISKRERDEAKVVRKRNIKVFHEILSGMPNLTFRTTWSEAQQMLLDNPKFTGDIELQSLDKEDALICFEEHICMLEQEHDEEKERDRRRQKRQQRKNREAFIVLLDELHENKLLTATSLWKDLYSIINRDERFHKMLAQRGSTPLDLFKFYVEALKARYPAERKLIKEIIKDNGLNIDLSTSFEDFVALVSKDERSKGIDDGNMRMTYESFLEKAQGRERERQRDDARRMRKLEQNFCEMLCSAKFIGHNTTWEEVRDHFSGHPAFCALTLESERIRLFKEYLISLESAALAESEKSRKGHKEKHRHKREVSESVDKRE 658
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Cavefish
Match: prpf40a (PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]) HSP 1 Score: 393.66 bits (1010), Expect = 7.008e-125 Identity = 252/573 (43.98%), Postives = 350/573 (61.08%), Query Frame = 1 Query: 322 WKEFKSEQGKIYYYNTVTQQSVWQKPPEL-AEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKA--------------------------------------------TLGSMPSSSDKVNSHKDSSSEDEV----NPAHNIPIPE------KVVYR--TKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHD--IKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 W E KS GK YYYNT T+QS W+KP EL + AE++ + E N+ + KPKE ++ IKA L MP +V+S +S ++ PA N E K VY+ TKEE ++ ++ +LKE V NA+WE A+K+I DPRY L K ++KKQ FN YK Q +K+E+EEAR++ K++KE ++FL NH K++S Y+KA+ + D W+ VPERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T++TTW EAQ+ LL+NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EEEK++ R +R QRKNRE+F F+DELH+ G+L S+S W ++Y IS D RF ML QPGSTPLDLFKFYV +LK+R+ EKRI+K+IL+D+ F + +TS E F VI D+R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK ++ SWE V ++ F+ + LES+R + +K+++ + Sbjct: 32 WTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQML---SKCPWKEYNKESRWTKPKELEDLEAMIKAEENGNTDVVAPGTAPPLAAQTDTAVAMAAGAEADATIATAAAEEQLSQMPMQGAEVSSDATMTSTEDTPVIETPASNDSSKEERPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGDQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTISADIRFASMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEISTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPEASWEGVRERFLKEAAFEDITLESERKRIFKDFMHVL 601
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Cavefish
Match: prpf40a (PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]) HSP 1 Score: 393.66 bits (1010), Expect = 1.916e-124 Identity = 252/573 (43.98%), Postives = 350/573 (61.08%), Query Frame = 1 Query: 322 WKEFKSEQGKIYYYNTVTQQSVWQKPPEL-AEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKA--------------------------------------------TLGSMPSSSDKVNSHKDSSSEDEV----NPAHNIPIPE------KVVYR--TKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHD--IKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 W E KS GK YYYNT T+QS W+KP EL + AE++ + E N+ + KPKE ++ IKA L MP +V+S +S ++ PA N E K VY+ TKEE ++ ++ +LKE V NA+WE A+K+I DPRY L K ++KKQ FN YK Q +K+E+EEAR++ K++KE ++FL NH K++S Y+KA+ + D W+ VPERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T++TTW EAQ+ LL+NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EEEK++ R +R QRKNRE+F F+DELH+ G+L S+S W ++Y IS D RF ML QPGSTPLDLFKFYV +LK+R+ EKRI+K+IL+D+ F + +TS E F VI D+R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK ++ SWE V ++ F+ + LES+R + +K+++ + Sbjct: 62 WTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQML---SKCPWKEYNKESRWTKPKELEDLEAMIKAEENGNTDVVAPGTAPPLAAQTDTAVAMAAGAEADATIATAAAEEQLSQMPMQGAEVSSDATMTSTEDTPVIETPASNDSSKEERPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGDQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTISADIRFASMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEISTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPEASWEGVRERFLKEAAFEDITLESERKRIFKDFMHVL 631
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Cavefish
Match: ENSAMXT00000053110.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002066.1:1764:7823:-1 gene:ENSAMXG00000037413.1 transcript:ENSAMXT00000053110.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 108.227 bits (269), Expect = 9.675e-27 Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = 1 Query: 196 AWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAE 420 WTEH + DG+TYYYN TKQSTWEKPDELK+PAE++LS+CPWKE+KS+ GK YYYN+ +++S W KP EL + E Sbjct: 79 VWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQSKESRWTKPKELEDLE 153
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Cavefish
Match: tcerg1a (transcription elongation regulator 1 [Source:NCBI gene;Acc:103038555]) HSP 1 Score: 69.3218 bits (168), Expect = 1.398e-11 Identity = 71/298 (23.83%), Postives = 134/298 (44.97%), Query Frame = 1 Query: 316 CPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSM---PSSSD-------------KVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRF 1158 PW + ++++YN T+ S+W++P EL G D D I E P +D K G + P++++ KV KDS SE E + + +E ++ +L E V +TWE + I DPRY L ++KQ+F+ Y R ++ER+E R +I +AK+D K +M ++L + + + + + A+ + +DR I+ + + + K+EK+ +K ++ + F E+L ++ + W + + + +PR+ Sbjct: 467 TPWCVVWTGDERVFFYNPTTRMSMWERPEELV-------GRADV-DKSIQE------PPHKKGLDNGPKLVFGKLEQEPAATEDTSEDEPSRAKKRKVEERKDSDSEKEAAMEAELRAARERAVVPQETRMSQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEERKEKRNKIMQAKDDFRK-MMEEARLGVRTTFSEFAAKHARDSRFKAIDKMKDREAIFIEFMTSLRKKEKDNSKNRGEKVKQDFFELLSDY-HVDGQQRWSKVKEKMETDPRY 747
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Cavefish
Match: tcerg1a (transcription elongation regulator 1 [Source:NCBI gene;Acc:103038555]) HSP 1 Score: 69.3218 bits (168), Expect = 1.460e-11 Identity = 71/298 (23.83%), Postives = 134/298 (44.97%), Query Frame = 1 Query: 316 CPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSM---PSSSD-------------KVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRF 1158 PW + ++++YN T+ S+W++P EL G D D I E P +D K G + P++++ KV KDS SE E + + +E ++ +L E V +TWE + I DPRY L ++KQ+F+ Y R ++ER+E R +I +AK+D K +M ++L + + + + + A+ + +DR I+ + + + K+EK+ +K ++ + F E+L ++ + W + + + +PR+ Sbjct: 446 TPWCVVWTGDERVFFYNPTTRMSMWERPEELV-------GRADV-DKSIQE------PPHKKGLDNGPKLVFGKLEQEPAATEDTSEDEPSRAKKRKVEERKDSDSEKEAAMEAELRAARERAVVPQETRMSQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEERKEKRNKIMQAKDDFRK-MMEEARLGVRTTFSEFAAKHARDSRFKAIDKMKDREAIFIEFMTSLRKKEKDNSKNRGEKVKQDFFELLSDY-HVDGQQRWSKVKEKMETDPRY 726
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Sea Lamprey
Match: prpf40a (PRP40 pre-mRNA processing factor 40 homolog A [Source:ZFIN;Acc:ZDB-GENE-030131-274]) HSP 1 Score: 471.085 bits (1211), Expect = 1.044e-153 Identity = 282/613 (46.00%), Postives = 386/613 (62.97%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNND---TSDNEINENNTTDKPKESSAID-EAIKATLGSMPSSSDKVNSHKDSSS---------------EDEV--------------------NPAHNIPI-----------PEKVVY--RTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKS------HDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 WTEH + DGRTY+YN TKQSTWEKP ELK+P E +++ CPWKE+KS+ GK Y+YN T++S W KP EL + E + + D T ++ + + P ++ +A T GS +SS N S++ +D V N +P EK VY TKEE + ++ +LK+ VP +A+WE A+KMI DPRY L K ++KKQ +N YKTQR K+E+EEARLR K+AK+ L++FL H KL+S + YRKA+ + W V ERDR EIYED + + K+EKEEAK LRKRNI+ ILD M ++TF+TTW EAQ+ L++NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EE+KE+ + R +RMQRKNRE F +F+DELH GKL S+S W DLY +S D RF +ML QPGSTPLDLFKFYV +LK+R+ +EK+I+K++L+D+NF + T+ E F +I D+R TLD GNV++A+ SLIE+AE+ EK+R KE ++QK+ E F+ MLK HD K W++V + N F + +ES+R++ +KEY+ + Sbjct: 114 WTEHKSPDGRTYFYNSDTKQSTWEKPLELKSPGEMLVASCPWKEYKSDTGKPYFYNAQTKESRWTKPKELEDLENMIKAHEDSGSTGESCLRHRGQMELPVPAAVTTVQAASGTPGSTGTSSPVENGASPSAAGTTSALPPSADGTPQQDGVSLAAGGAVTATASANAVAMGNATATVPPVIVVKEDGRKKKEKKVYTWNTKEEARQAFKDLLKDKKVPASASWEQAMKMIINDPRYSALPKLSEKKQAYNAYKTQRDKEEKEEARLRAKEAKDRLQRFLETHEKLNSYVKYRKAEQMFGSMEVWNNVQERDRNEIYEDVIFFLAKKEKEEAKRLRKRNIQALKSILDSMTSVTFRTTWSEAQQHLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEDKEKGRLRERRMQRKNRELFQLFLDELHNNGKLHSMSTWMDLYPAVSADIRFSRMLGQPGSTPLDLFKFYVEDLKARYHEEKKIIKDVLKDKNFMVEVKTTFEEFASLISSDKRAVTLDAGNVKLAFNSLIEKAEAREKEREKEEARKQKRKEAAFRNMLKQATPPLEHDSK----WDDVRDRFVNDSAFDQITVESERIRLFKEYVGAL 722
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007694.1 (pep scaffold:Pmarinus_7.0:GL498339:535:2562:-1 gene:ENSPMAG00000006952.1 transcript:ENSPMAT00000007694.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 53.1434 bits (126), Expect = 1.200e-7 Identity = 22/34 (64.71%), Postives = 25/34 (73.53%), Query Frame = 1 Query: 187 PEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELK 288 P WTEH DGRTYYYN+ T +STWEKP EL+ Sbjct: 314 PSAEWTEHKTADGRTYYYNIRTLESTWEKPAELR 347
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Sea Lamprey
Match: tcerg1a (transcription elongation regulator 1a (CA150) [Source:ZFIN;Acc:ZDB-GENE-030131-1791]) HSP 1 Score: 49.2914 bits (116), Expect = 3.053e-6 Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 1 Query: 676 ILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYK---TQRQKDERE---------EARLR-----IKKAKEDLEKFL---MNHSKLSSAIGYRKADSLLSDCPEWTAVPERD-RREIYED------TLIQMGKREK---EEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPR 1155 +L E ++ G + W A + + GD R+Q ++ Q+++ F + TQ ERE EA LR ++KA+ + + + K AI + KA LLSD + V D RR + +D +L+ ++EK E L KR + F ++LD +T +TW E ++++ E+PR Sbjct: 302 LLMEQHLDGQSRWTKARERMEGDTRFQAVESSGQREEWFRQHVEKLTQAGDSERERELERQARTEASLREREREVQKARSEQTREIDREREQHKREEAIQHFKA--LLSDMVRSSEVNWDDTRRSLRKDHRWELASLLDRSEKEKLFKEHVDALSKRKKEQFKQLLDETSEITLTSTWREVRKLIKEDPR 489
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Sea Lamprey
Match: tcerg1a (transcription elongation regulator 1a (CA150) [Source:ZFIN;Acc:ZDB-GENE-030131-1791]) HSP 1 Score: 49.2914 bits (116), Expect = 3.170e-6 Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 1 Query: 676 ILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYK---TQRQKDERE---------EARLR-----IKKAKEDLEKFL---MNHSKLSSAIGYRKADSLLSDCPEWTAVPERD-RREIYED------TLIQMGKREK---EEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPR 1155 +L E ++ G + W A + + GD R+Q ++ Q+++ F + TQ ERE EA LR ++KA+ + + + K AI + KA LLSD + V D RR + +D +L+ ++EK E L KR + F ++LD +T +TW E ++++ E+PR Sbjct: 295 LLMEQHLDGQSRWTKARERMEGDTRFQAVESSGQREEWFRQHVEKLTQAGDSERERELERQARTEASLREREREVQKARSEQTREIDREREQHKREEAIQHFKA--LLSDMVRSSEVNWDDTRRSLRKDHRWELASLLDRSEKEKLFKEHVDALSKRKKEQFKQLLDETSEITLTSTWREVRKLIKEDPR 482
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Yeast
Match: PRP40 (U1 snRNP protein involved in splicing; interacts with the branchpoint-binding protein during the formation of the second commitment complex [Source:SGD;Acc:S000001495]) HSP 1 Score: 142.895 bits (359), Expect = 3.637e-36 Identity = 148/521 (28.41%), Postives = 251/521 (48.18%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDT-SDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMIS----GDPRYQELKKYN-QKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEW--TAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILL-----ENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLE----SFLKVIEIDERGRTLDPGNVRMAYTSLI-ERAESIEK--QRLKEVLKQQK 1701 W E GR YYYN +TK+STWEKP EL + E +L E WK K+ GK+YYYN T+++ W P + E +A +DT S ++N N I T G +N E+E A+N + V RTKEE E+ + +LKE V ++TW + ++IS DPRY + KK++F Y + R D+ + K KE +K L N+S + + A L++D P + + V E+ +R+ ++D + + +KE K L+ + +K E L+ + + T+ Q++L ++ R++ + + + ED L + + + +E D + + + R R R+ F + E+ K+ + + W D+Y I D RF ML + GS+ LDLF +V E + ++ I ++ L D+NF ++ S E + KV+E D + +D ++ + LI +R E I++ Q + +L+Q+K Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPAFEKKVEPIAEQKHDTVSHAQVNGNR--------------IALTAGEKQEPGRTIN-------EEESQYANNSKLL-NVRRRTKEEAEKEFITMLKENQV--DSTWSFS-RIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNRSADQLLKEHNETSKFKEAFQKMLQNNSHIKYYTRWPTAKRLIADEPIYKHSVVNEKTKRQTFQDYIDTLIDTQKESKKKLKTQALKELREYLNGIITTSSSETFITWQQLLNHYVFDKSKRYMANRHFKVLTHEDVLNEYLKIVNTIENDLQNKLNELRLRNYTRDRIARDNFKSLLREV--PIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCLDLFLDFVDEQRMYIFAQRSIAQQTLIDQNFEWNDADSDEITKQNIEKVLENDRKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKK 497
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Nematostella
Match: EDO30814 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SZQ3]) HSP 1 Score: 95.1301 bits (235), Expect = 9.705e-24 Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 1 Query: 202 TEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAE 414 TEH A DGRTY+YN +K STW+KPDELKTP+E IL PWKE K++ G++YY+NT T++S+W +P EL E Sbjct: 2 TEHKAPDGRTYFYNNDSKVSTWQKPDELKTPSEIILDSFPWKEHKADSGRVYYHNTETKESIWTEPKELTE 72
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Nematostella
Match: EDO30257 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1A4]) HSP 1 Score: 83.5741 bits (205), Expect = 3.780e-17 Identity = 48/116 (41.38%), Postives = 79/116 (68.10%), Query Frame = 1 Query: 1522 DRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLK--SHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 D N T D ++S F ++++ D+R TLDPGN++MA+ LIE+AE+ EK+R K+ K+Q++ E FKQMLK S ++++ SWEEV ++ F + LE+DR++ ++EYL ++ Sbjct: 1 DCNITVDTDSSFSDFSELVQCDKRSATLDPGNIKMAFNHLIEKAEAREKERQKKEEKEQRRKESAFKQMLKAFSPALEATSSWEEVRERCEADSSFSAITLEADRIRIFQEYLASL 116
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Nematostella
Match: EDO30813 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SZQ2]) HSP 1 Score: 68.5514 bits (166), Expect = 1.523e-14 Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1 Query: 634 VYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDER 828 +Y TK+E ++ ++ +LKE V A+W+TA+++I DPRY LKK N+KKQ FN YKTQR +E+ Sbjct: 5 IYATKDEAKQAFKELLKEKEVSPAASWDTAMRLIVNDPRYGALKKMNEKKQAFNEYKTQRANEEK 69
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Nematostella
Match: EDO43130 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZN2]) HSP 1 Score: 61.2326 bits (147), Expect = 1.410e-9 Identity = 79/340 (23.24%), Postives = 154/340 (45.29%), Query Frame = 1 Query: 277 DELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESS----AIDEAIKATLGSM----------PSSSDKVNSHKDSSSEDEVNPAHNIPI---PEKVVYRTK----EELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRRE-IYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVM--PNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHI 1224 D K A +++ W + GK +++N T+ SVW+KP EL + +K+ +EI EN + ++S ++D+A + S P S+ KD + + PA + EK K +E + +R ++ E V +TWE + I DPRY L + ++KQ F + R +ER+E + ++K+ K+ K ++ K++ + + + + + RE I+ + + ++ K+EKE +K+ +N KL ++ +++ NL W + + + ++PR+ E + + KED + F E + Sbjct: 255 DRSKPVASELVPGTTWCVVWTGTGKAFFFNPATRLSVWEKPEELKDNDKV---------DEIIENGPPSREEKSKSRKLSLDDADEHQAASKRPRRESRDEPPQSTSSDVEMKDEPLREPLPPAKHTKAHRKEEKAARDRKMLPLDERMKQFREMMLERGVSAFSTWEKELPKIVFDPRYLLLNQ-KERKQCFEKFVRTRADEERQERKNKMKEKKDSF-KAMLQEMKVTVKTSFSEFAMKHGKEERFKQIEKMKERETIFLEYISELKKKEKETSKI---KNTKLHDDFFELLEEQNLEAGANWRKVKSKIEDDPRYKAVESVST--KEDYFMQFMEEL 578
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Medaka
Match: prpf40a (pre-mRNA processing factor 40 homolog A [Source:NCBI gene;Acc:101172539]) HSP 1 Score: 449.129 bits (1154), Expect = 8.316e-145 Identity = 265/597 (44.39%), Postives = 381/597 (63.82%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGN-NDTSDNEINENNTTDKP----------------------------KESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPI-------PE--KVVYR--TKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLK--SHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTI 1863 WTEH + DG+TYYYN TKQSTWEKPD+LK+PAE++LS+C WKE+KS+ GK YYYN+ T++S W KP EL + E + N T++ T P ++ + E + + + P++ K S+E + + PE K Y+ TKEE ++ ++ +LKE V N++WE A+K+I DPRY L K ++KKQ FN YK Q +K+E+EEAR++ K++KE ++FL NH K++S Y+KA+ + + W+ VPERDR EIYED L + K+EKE+AK LRKRN + ILD M N+T++TTW EAQ+ LL+NP F EDE+LQ+MDKEDALICFEEHIR LEK+ EEEK++ R +R QRKNRE+F F+DELH+ G+L S+S W ++Y +S D RF ML QPGSTPLDLFKFYV +LK+R+ EKRI+K+IL+D++F + NTS + F +I D+R TLD GN+++A+ SL+E+AE+ E++R KE ++ K+ E FK MLK + ++ WE V ++ F+ + LES+R + +K+++ + Sbjct: 117 WTEHKSLDGKTYYYNTETKQSTWEKPDDLKSPAEQLLSKCHWKEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAETAAVTPGTAATPTVQADNTATLAAVTEVETTTAVATAAAAAAAAVVSEELPSQVSVHPAAEVKTTDAPVVSTESSAVTENTASVKVTKEEPPEIQKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGELEVWSCVPERDRLEIYEDVLFFLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSSWMEMYPALSSDMRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKSFMVEVNTSFDDFGSIISSDKRAATLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKTMLKQATPPLEPEALWEGVRERFVKEAAFEDITLESERKRIFKDFMHVL 713
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Medaka
Match: ENSORLT00000004049.2 (WW domain binding protein 4 [Source:NCBI gene;Acc:101161956]) HSP 1 Score: 57.7658 bits (138), Expect = 2.826e-8 Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 1 Query: 199 WTEHIAQDGRTYYYNLITKQSTWEKPDELK------TPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAE 420 W E A++G YYYN IT +S WEKP + P E+ S W S +G YYYN T +S W+KP + + + Sbjct: 139 WVEGFAENGHMYYYNTITGESQWEKPADPPGEPSTFVPPERSFSSA-WMPAVSPEGFTYYYNPETGESSWEKPADFSSGD 217
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Medaka
Match: TCERG1 (transcription elongation regulator 1 [Source:NCBI gene;Acc:101160257]) HSP 1 Score: 54.6842 bits (130), Expect = 3.754e-7 Identity = 78/335 (23.28%), Postives = 148/335 (44.18%), Query Frame = 1 Query: 169 NSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDEL--KTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPN--LTFKTTWYEAQRILLENPRF 1158 N +P P W D R ++YN T+ S W++P+EL + +K + E P K E GK + V ++ P+L+ N T D +DE + ++ K+++ E E+ A E+ + + + + +R +L E V +TW+ + I DPRY L ++KQ+F+ Y R ++ER+E + ++ +AK++ K +M +KL+ + + P + + + +DR I+ + + M KREKE++K R K+ + D++ + + W + + L +PR+ Sbjct: 446 NPIPGTP---WCVVWTGDDRVFFYNPTTRLSMWDRPEELVGRADVDKHIQEPPHKR-GVEDGK--------KTGVIKEEPDLS---------NATED----------------ILDEEPSKAKKRKKEEQKESDTEKEAAMEAELKAAR-----ERAIVPLESRMTQ-FREMLLERGVSAFSTWDKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEERKEKKNKLMQAKDEFRK-MMEDAKLTPRTTFSEFALKHGRDPRFKTIEKMKDREAIFIEFMTAMRKREKEDSK---SRGEKVRQDFFDLLSDQHIDGNHRWSKVKERLETDPRY 732 HSP 2 Score: 51.6026 bits (122), Expect = 3.834e-6 Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 1 Query: 49 FGIILNGIEISMSNNYQFTLPPL-THSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKP 276 F + L G+ I + PP+ + +P P S+ SL LPE WTE+ DG+TYYYN T +STWEKP Sbjct: 309 FRVPLPGMHIPLPGMLPGMGPPIVSMMHPQLALSAAPASMAGSL-HLPE--WTEYKTADGKTYYYNNRTLESTWEKP 382
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Medaka
Match: TCERG1 (transcription elongation regulator 1 [Source:NCBI gene;Acc:101160257]) HSP 1 Score: 54.6842 bits (130), Expect = 4.590e-7 Identity = 78/335 (23.28%), Postives = 148/335 (44.18%), Query Frame = 1 Query: 169 NSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDEL--KTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPN--LTFKTTWYEAQRILLENPRF 1158 N +P P W D R ++YN T+ S W++P+EL + +K + E P K E GK + V ++ P+L+ N T D +DE + ++ K+++ E E+ A E+ + + + + +R +L E V +TW+ + I DPRY L ++KQ+F+ Y R ++ER+E + ++ +AK++ K +M +KL+ + + P + + + +DR I+ + + M KREKE++K R K+ + D++ + + W + + L +PR+ Sbjct: 466 NPIPGTP---WCVVWTGDDRVFFYNPTTRLSMWDRPEELVGRADVDKHIQEPPHKR-GVEDGK--------KTGVIKEEPDLS---------NATED----------------ILDEEPSKAKKRKKEEQKESDTEKEAAMEAELKAAR-----ERAIVPLESRMTQ-FREMLLERGVSAFSTWDKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEERKEKKNKLMQAKDEFRK-MMEDAKLTPRTTFSEFALKHGRDPRFKTIEKMKDREAIFIEFMTAMRKREKEDSK---SRGEKVRQDFFDLLSDQHIDGNHRWSKVKERLETDPRY 752
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Medaka
Match: TCERG1 (transcription elongation regulator 1 [Source:NCBI gene;Acc:101160257]) HSP 1 Score: 54.6842 bits (130), Expect = 4.608e-7 Identity = 78/335 (23.28%), Postives = 148/335 (44.18%), Query Frame = 1 Query: 169 NSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDEL--KTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPE-RDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPN--LTFKTTWYEAQRILLENPRF 1158 N +P P W D R ++YN T+ S W++P+EL + +K + E P K E GK + V ++ P+L+ N T D +DE + ++ K+++ E E+ A E+ + + + + +R +L E V +TW+ + I DPRY L ++KQ+F+ Y R ++ER+E + ++ +AK++ K +M +KL+ + + P + + + +DR I+ + + M KREKE++K R K+ + D++ + + W + + L +PR+ Sbjct: 482 NPIPGTP---WCVVWTGDDRVFFYNPTTRLSMWDRPEELVGRADVDKHIQEPPHKR-GVEDGK--------KTGVIKEEPDLS---------NATED----------------ILDEEPSKAKKRKKEEQKESDTEKEAAMEAELKAAR-----ERAIVPLESRMTQ-FREMLLERGVSAFSTWDKELHKIVFDPRYLLLNP-KERKQVFDQYVKTRAEEERKEKKNKLMQAKDEFRK-MMEDAKLTPRTTFSEFALKHGRDPRFKTIEKMKDREAIFIEFMTAMRKREKEDSK---SRGEKVRQDFFDLLSDQHIDGNHRWSKVKERLETDPRY 768
BLAST of Pre-mRNA-processing factor 40 vs. Planmine SMEST
Match: SMESG000044274.1 (SMESG000044274.1) HSP 1 Score: 1355.12 bits (3506), Expect = 0.000e+0 Identity = 732/734 (99.73%), Postives = 732/734 (99.73%), Query Frame = 1 Query: 82 MSNNYQFTLPPLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIXXXXXXXXXXXXXXXXXXXXXXXXNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHDIKSSVSWEEVCQKLGNLEDFKFVELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKESVSSREHKTNXXXXXXXXXXXXXXXXXXXXXXNNGTEDDSXXXXXXXXXXXXXXXXXXHNRQDSSSDEMGPTATVGQKPVDARQPSEGEVIDEDEPEPRQALNHPKAIVSSSAEMS 2283 MSNNYQFTLPPLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIRLLEKDHEEEKEREKRRLKRMQRKNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHDIKSSVSWEEVCQKLGNLEDFK VELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKESVSSREHKTNRDKPKRKKKKHSRDSSADSKDKNNGTEDDSKGKYKLHKKSKKKKKKRKHNRQDSSSDEMGPTATVGQKPVDARQPSEGEVIDEDEPEPRQ LNHPKAIVSSSAEMS Sbjct: 1 MSNNYQFTLPPLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVNPAHNIPIPEKVVYRTKEELEEGWRVILKELNVPGNATWETAVKMISGDPRYQELKKYNQKKQIFNTYKTQRQKDEREEARLRIKKAKEDLEKFLMNHSKLSSAIGYRKADSLLSDCPEWTAVPERDRREIYEDTLIQMGKREKEEAKVLRKRNIKLFNEILDVMPNLTFKTTWYEAQRILLENPRFVEDEDLQSMDKEDALICFEEHIRLLEKDHEEEKEREKRRLKRMQRKNREAFAVFMDELHEKGKLTSLSMWKDLYEIISRDERFYKMLSQPGSTPLDLFKFYVLELKSRFSKEKRIVKEILEDRNFTFDFNTSLESFLKVIEIDERGRTLDPGNVRMAYTSLIERAESIEKQRLKEVLKQQKKSEFNFKQMLKSHDIKSSVSWEEVCQKLGNLEDFKSVELESDRMKYYKEYLLTIRSRSRSKFSQEIKRKRKHRSNSKESVSSREHKTNRDKPKRKKKKHSRDSSADSKDKNNGTEDDSKGKYKLHKKSKKKKKKRKHNRQDSSSDEMGPTATVGQKPVDARQPSEGEVIDEDEPEPRQVLNHPKAIVSSSAEMS 734
BLAST of Pre-mRNA-processing factor 40 vs. Planmine SMEST
Match: SMESG000011919.1 (SMESG000011919.1) HSP 1 Score: 56.225 bits (134), Expect = 1.107e-7 Identity = 59/212 (27.83%), Postives = 83/212 (39.15%), Query Frame = 1 Query: 109 PPLTHSYPVPTSYLPPTSVQN-------------SLPTLPEQ-AWTEHIAQDGRTYYYNLITKQSTWEKPDEL--------------KTPAEKILSECP--------------------WKEFKSEQGKIYYYNTVTQQSVWQKPPELAEAEKLAYGNNDTSDNEINENNTTDKPKESSAIDEAIKATLGSMPSSSDKVNSHKDSSSEDEVN 600 PP H P PP + +L TL EQ W ++ DGR YYY T+Q+TW++P + K PA +S P W E+K+ G+ Y++N T + W+KP L + E N+IN KP E + I E K+ S+ +KV+ KD SS DE N Sbjct: 377 PPFAHMPPPMMGQAPPLPMHPDPNFGGNKVDKPLTLATLNEQDVWVQNPTSDGRIYYYQWKTRQTTWDRPQGVKIIIQSELDNILANKNPA--TISSAPVQLLIPNIAPQPTKPPEVVEWNEYKAPDGRPYFHNRRTAVTTWEKPQVLIDWE-----------NKIN----GVKPAEPAPIPE--KSISKSVEIEENKVDDSKDESS-DESN 568
BLAST of Pre-mRNA-processing factor 40 vs. Planmine SMEST
Match: SMESG000013095.1 (SMESG000013095.1) HSP 1 Score: 51.9878 bits (123), Expect = 1.917e-6 Identity = 37/138 (26.81%), Postives = 62/138 (44.93%), Query Frame = 1 Query: 166 QNSLPTLPEQAWTEHIAQDGRTYYYNLITKQSTWEKPDELKTPAEKILSECPWKEFKSEQGKIYYYNTVTQQSVWQKPPELA---EAEKLAYGNNDTSDNEINENNTT-DKPKESSAIDEAIKATLGSMPSSSDKVNS 567 +NS + W E + Q+GR YY + +K++ WEKP + P W+E G++YY + Q++ W+ P + + KLA N ++N ++ + +P SS +D A S D V S Sbjct: 203 ENSTAEVLANGWEERVDQNGRIYYVDHKSKRTQWEKPTNAQLPEG-------WEERADLSGRVYYVDHANQKTQWEHPASKSAPQKVNKLAKINMPAANNPLSVRAVSPTRPGPSSDVDAATMFLRRRQISHEDTVAS 333 The following BLAST results are available for this feature:
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 4
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Pre-mRNA-processing factor 40 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Pre-mRNA-processing factor 40 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 4
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 4
BLAST of Pre-mRNA-processing factor 40 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Pre-mRNA-processing factor 40 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30029911 ID=SMED30029911|Name=Pre-mRNA-processing factor 40|organism=Schmidtea mediterranea sexual|type=transcript|length=2474bpback to top protein sequence of SMED30029911-orf-1 >SMED30029911-orf-1 ID=SMED30029911-orf-1|Name=SMED30029911-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=752bp MSNNYQFTLPPLTHSYPVPTSYLPPTSVQNSLPTLPEQAWTEHIAQDGRTback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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