Hemoglobin C1 polymer

Overview
NameHemoglobin C1 polymer
Smed IDSMED30029834
Length (bp)623
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Hemoglobin C1 polymer (SMED30029834) t-SNE clustered cells

Violin plots show distribution of expression levels for Hemoglobin C1 polymer (SMED30029834) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Hemoglobin C1 polymer (SMED30029834) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Hemoglobin C1 polymer (SMED30029834) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30029834

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 4

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
protonephridiaSMED30029834SMESG000048630.1 SMESG000022261.1 dd_Smed_v4_4497_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30029834SMESG000048630.1 SMESG000022261.1 dd_Smed_v4_4497_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30029834SMESG000048630.1 SMESG000022261.1 dd_Smed_v4_4497_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30029834SMESG000048630.1 SMESG000022261.1 dd_Smed_v4_4497_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Human
Match: MB (myoglobin [Source:HGNC Symbol;Acc:HGNC:6915])

HSP 1 Score: 44.669 bits (104), Expect = 4.919e-6
Identity = 18/52 (34.62%), Postives = 32/52 (61.54%), Query Frame = 2 
Query:  179 GQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVF 334
            GQ++  RLF  HPE ++ F +F+++ S DE+ +S  +K H    + +L G+ 
Sbjct:   26 GQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGIL 77
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Human
Match: MB (myoglobin [Source:HGNC Symbol;Acc:HGNC:6915])

HSP 1 Score: 45.0542 bits (105), Expect = 6.812e-6
Identity = 18/53 (33.96%), Postives = 33/53 (62.26%), Query Frame = 2 
Query:  179 GQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFE 337
            GQ++  RLF  HPE ++ F +F+++ S DE+ +S  +K H    + +L G+ +
Sbjct:   26 GQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILK 78
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Human
Match: MB (myoglobin [Source:HGNC Symbol;Acc:HGNC:6915])

HSP 1 Score: 45.0542 bits (105), Expect = 6.812e-6
Identity = 18/53 (33.96%), Postives = 33/53 (62.26%), Query Frame = 2 
Query:  179 GQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFE 337
            GQ++  RLF  HPE ++ F +F+++ S DE+ +S  +K H    + +L G+ +
Sbjct:   26 GQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKHGATVLTALGGILK 78
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Celegans
Match: glb-14 (GLoBin related [Source:UniProtKB/TrEMBL;Acc:O17824])

HSP 1 Score: 50.447 bits (119), Expect = 1.675e-7
Identity = 29/121 (23.97%), Postives = 65/121 (53.72%), Query Frame = 2 
Query:  101 ISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAE 463
            +S   +++L K ++ I+   +D ++ G KIF RLF+ +P Y  ++ +F  +     ++++  ++ H+  ++N L  + +++   E LG  +  +  +H   NV  NH +  +  + EV+ E
Sbjct:   85 LSDRQRDVLQKTFAPIL---QDCVRNGLKIFVRLFSEYPRYKLIWPQFRAIPD-SSLMNAVELRRHASVYLNGLGKIIDSMRDEEALGKSMSRIAVAHIKWNVQRNHVIHMIEPVLEVVKE 201
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Zebrafish
Match: cygb1 (cytoglobin 1 [Source:NCBI gene;Acc:246090])

HSP 1 Score: 55.4546 bits (132), Expect = 1.928e-9
Identity = 33/128 (25.78%), Postives = 61/128 (47.66%), Query Frame = 2 
Query:   98 SISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRN-VTCNHFVATVPILNEVLAENLKSC 478
            S++ ED  ++   W  + + +++    G  +  R FT  P   + F+ F  +    E+  ++ +K H  R +N+LN + E L   ++L  +   +G SH LR+ V   +F     ++ EVL E    C
Sbjct:   15 SLTEEDVCVIQDTWKPVYAERDNA---GVAVLVRFFTNFPSAKQYFEHFRELQDPAEMQQNAQLKKHGQRVLNALNTLVENLRDADKLNTIFNQMGKSHALRHKVDPVYFKILAGVILEVLVEAFPQC 139
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Zebrafish
Match: xgb (x globin [Source:ZFIN;Acc:ZDB-GENE-050125-1])

HSP 1 Score: 51.9878 bits (123), Expect = 4.924e-8
Identity = 37/135 (27.41%), Postives = 59/135 (43.70%), Query Frame = 2 
Query:  158 KEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHF--------VATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEG 538
            +ED  K+G  +F RLF  HPE   +F  F ++  L+ + +S  ++AH LR ++ +      LD  E L  +   +G SH   N    ++         A  PIL +     L     +E  K +      I+ EG
Sbjct:   44 QEDIAKVGIIMFVRLFETHPECKDVFFLFRDVEDLERLRTSRELRAHGLRVMSFIEKSVARLDQLERLETLALELGKSHYRYNAPPKYYGYVGAEFICAVRPILKDRWTPEL-----EEAWKTLFQYVTSIMREG 173
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Zebrafish
Match: mb (Danio rerio myoglobin (mb), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001362390])

HSP 1 Score: 46.595 bits (109), Expect = 2.061e-6
Identity = 32/120 (26.67%), Postives = 58/120 (48.33%), Query Frame = 2 
Query:  107 IEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHK-LRNVTCNHFVATVPILNEVLAE 463
            + D +++ K W  +   + D    G ++  RLF  +P+ +KLF +F  +S  D +  S A+ AH    +  L    E L    +   +LK + ++H  +  V  N+F     +L +V+AE
Sbjct:    1 MADHDLVLKCWGAV---EADYAANGGEVLNRLFKEYPDTLKLFPKFSGISQGD-LAGSPAVAAHGATVLKKLG---ELLKAKGDHAALLKPLANTHANIHKVALNNFRLITEVLVKVMAE 113
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Zebrafish
Match: mb (Danio rerio myoglobin (mb), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001362390])

HSP 1 Score: 46.595 bits (109), Expect = 2.061e-6
Identity = 32/120 (26.67%), Postives = 58/120 (48.33%), Query Frame = 2 
Query:  107 IEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHK-LRNVTCNHFVATVPILNEVLAE 463
            + D +++ K W  +   + D    G ++  RLF  +P+ +KLF +F  +S  D +  S A+ AH    +  L    E L    +   +LK + ++H  +  V  N+F     +L +V+AE
Sbjct:    1 MADHDLVLKCWGAV---EADYAANGGEVLNRLFKEYPDTLKLFPKFSGISQGD-LAGSPAVAAHGATVLKKLG---ELLKAKGDHAALLKPLANTHANIHKVALNNFRLITEVLVKVMAE 113
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Zebrafish
Match: mb (Danio rerio myoglobin (mb), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001362390])

HSP 1 Score: 46.595 bits (109), Expect = 2.061e-6
Identity = 32/120 (26.67%), Postives = 58/120 (48.33%), Query Frame = 2 
Query:  107 IEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHK-LRNVTCNHFVATVPILNEVLAE 463
            + D +++ K W  +   + D    G ++  RLF  +P+ +KLF +F  +S  D +  S A+ AH    +  L    E L    +   +LK + ++H  +  V  N+F     +L +V+AE
Sbjct:    1 MADHDLVLKCWGAV---EADYAANGGEVLNRLFKEYPDTLKLFPKFSGISQGD-LAGSPAVAAHGATVLKKLG---ELLKAKGDHAALLKPLANTHANIHKVALNNFRLITEVLVKVMAE 113
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Xenopus
Match: cygb (cytoglobin [Source:NCBI gene;Acc:448640])

HSP 1 Score: 53.1434 bits (126), Expect = 2.345e-8
Identity = 34/122 (27.87%), Postives = 64/122 (52.46%), Query Frame = 2 
Query:  101 ISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRN-VTCNHFVATVPILNEVLAE 463
            I+  ++ ++ + W+ + +  ED   +G  I  R F   P   + F +F++M    E+  S  ++ H+ R + ++N V E L  PE++  +L  VG SH L++ V   +F     ++ EV+AE
Sbjct:   19 ITESERGVIKETWARVYANCED---VGVSILIRFFVNFPSAKQHFSQFKHMEDPLEMEGSVQLRKHARRVMGAVNSVVENLGDPEKITTVLSIVGKSHALKHKVDPVYFKILTGVMLEVIAE 137
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Xenopus
Match: fbxo41 (F-box protein 41 [Source:Xenbase;Acc:XB-GENE-966908])

HSP 1 Score: 51.6026 bits (122), Expect = 6.646e-8
Identity = 34/123 (27.64%), Postives = 60/123 (48.78%), Query Frame = 2 
Query:  137 WSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHK-LRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKN 502
            WS+I +  E+    G+ +   LF  +P+    FK  +N+S+L E+  ++ ++AH  R + +LN V E L   + +   L H+   H+ +  V  N+F     ++  V  E L S    E  K+
Sbjct:   16 WSKIYANPEES---GRTVVISLFLTYPQTKIYFKNLKNISTLQEMQDNAGIRAHGKRVMGALNHVIENLKDWDAVCSALSHLAKRHQDVHKVEVNNFELLFLVIISVFKEALGSGFTPEQSKS 135
[Close]
BLAST of Hemoglobin C1 polymer vs. UniProt/SwissProt
Match: sp|P80721|GLB_PAREP (Globin-3 OS=Paramphistomum epiclitum OX=54403 PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 1.203e-9
Identity = 34/145 (23.45%), Postives = 68/145 (46.90%), Query Frame = 2 
Query:   95 MSISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPII 529
            M+++  +++IL KE    V T    ++ G   +  LFT HP+YI  F R E   +++ ++ S  +K ++     ++  + + +    E+  +    G  H  R VT + F++  PI  +     +K  + K  V+  L    P++
Sbjct:    1 MTLTKHEQDILLKELGPHVDTPAHIVETGLGAYHALFTAHPQYIIHFSRLEG-HTIENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKDHTSRKVTKDEFMSGEPIFTKYFQNLVKDAEGKAAVEKFLKHVFPMM 144
[Close]
BLAST of Hemoglobin C1 polymer vs. UniProt/SwissProt
Match: sp|P02218|GLB2_LUMTE (Extracellular globin-2 OS=Lumbricus terrestris OX=6398 PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 7.142e-9
Identity = 35/126 (27.78%), Postives = 53/126 (42.06%), Query Frame = 2 
Query:  134 EWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILN 511
            EW     +  D+    Q I++  F   PE   LFKR     +     S  A  AH+ R +  L+    TLD P  L + L H+   H+ R +  N+F A    +  V+A  L  C  +E     ++
Sbjct:   15 EWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDT-----SHPAFIAHAERVLGGLDIAISTLDQPATLKEELDHLQVQHEGRKIPDNYFDAFKTAILHVVAAQLGRCYDREAWDACID 135
[Close]
BLAST of Hemoglobin C1 polymer vs. UniProt/SwissProt
Match: sp|Q8UUR3|CYGB1_DANRE (Cytoglobin-1 OS=Danio rerio OX=7955 GN=cygb1 PE=2 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.594e-8
Identity = 33/128 (25.78%), Postives = 61/128 (47.66%), Query Frame = 2 
Query:   98 SISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRN-VTCNHFVATVPILNEVLAENLKSC 478
            S++ ED  ++   W  + + +++    G  +  R FT  P   + F+ F  +    E+  ++ +K H  R +N+LN + E L   ++L  +   +G SH LR+ V   +F     ++ EVL E    C
Sbjct:   15 SLTEEDVCVIQDTWKPVYAERDNA---GVAVLVRFFTNFPSAKQYFEHFRELQDPAEMQQNAQLKEHGQRVLNALNTLVENLRDADKLNTIFNQMGKSHALRHKVDPVYFKILAGVILEVLVEAFPQC 139
[Close]
BLAST of Hemoglobin C1 polymer vs. UniProt/SwissProt
Match: sp|P02168|MYG_OTOCR (Myoglobin OS=Otolemur crassicaudatus OX=9463 GN=MB PE=1 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 3.024e-7
Identity = 24/81 (29.63%), Postives = 47/81 (58.02%), Query Frame = 2 
Query:   95 MSISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFE 337
            M +S  + +++ K W ++ +   D    GQ +  RLFT HPE ++ F +F+N+ + DE+ +S  +K H +  + +L G+ +
Sbjct:    1 MGLSDGEWQLVLKIWGKVEA---DLAGHGQDVLIRLFTAHPETLEKFDKFKNLKTADEMKASEDLKKHGVTVLTALGGILK 78
[Close]
BLAST of Hemoglobin C1 polymer vs. UniProt/SwissProt
Match: sp|P18202|GLB_TUBTU (Globin, extracellular monomeric OS=Tubifex tubifex OX=6386 PE=1 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 3.288e-7
Identity = 30/114 (26.32%), Postives = 52/114 (45.61%), Query Frame = 2 
Query:  134 EWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKS 475
            +W+E   T   ++  G K++  +F   PE   LFKR +  ++      S+  +AH+ R +  L+     LD        L H+ S H  RN+  +++   V  L  VL + L +
Sbjct:   13 QWAEAFGTSHHRLDFGLKLWNSIFRDAPEIRGLFKRVDGDNAY-----SAEFEAHAERVLGGLDMTISLLDDQAAFDAQLAHLKSQHAERNIKADYYGVFVNELLAVLPDYLGT 121
[Close]
BLAST of Hemoglobin C1 polymer vs. TrEMBL
Match: A0A0X3PJM2 (Globin OS=Schistocephalus solidus OX=70667 GN=GLB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.331e-27
Identity = 50/135 (37.04%), Postives = 83/135 (61.48%), Query Frame = 2 
Query:  134 EWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEG 538
            EW +I   KEDK  LG ++F+ LFT +P YI+LFKRF ++ +LD I+ S+A KAH++RFI +++ + E LD    L ++LK +   H+ R +T N F  T+ +  + L+  LKS   +  ++ + + A  +I + 
Sbjct:   15 EWKQICKNKEDKYALGTEVFRLLFTKYPHYIRLFKRFRDLPNLDSIMQSAAFKAHAMRFIGAIDAIMENLDDESCLVELLKRLAEEHRPRGITENDFYKTLDVAYDALSPALKSDDARVALRQLFDTALSVIRQS 149
[Close]
BLAST of Hemoglobin C1 polymer vs. TrEMBL
Match: A0A183T8X6 (GLOBIN domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS12924 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.645e-18
Identity = 42/111 (37.84%), Postives = 67/111 (60.36%), Query Frame = 2 
Query:  197 RLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPII 529
            RLFT +P YI+LFKRF ++ +LD I+ S+A KAH++RFI +++ + E LD    L ++LK +   H  R +  N F   + I  + L+  LKS   +  ++ + N AA +I
Sbjct:    7 RLFTKYPHYIRLFKRFRDLPNLDSIMQSAAFKAHAMRFIGAIDDIMENLDDDSCLVELLKRLAEEHHPRGIRENDFCRALDIAYDALSPVLKSNNTRAALRQLFNDAAHVI 117
[Close]
BLAST of Hemoglobin C1 polymer vs. TrEMBL
Match: A0A410RH36 (Extracellular globin (Fragment) OS=Erpobdella octoculata OX=39305 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.638e-15
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 2 
Query:  113 DKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILN-IAAPI 526
            DK  +  +W +  S+ +D+I  GQ +++  F I+PE +KLF          + ++S A  AH++R +N L  +   LD PE L   LKH+   H+ RN+   +F   V  L+ V+   +  C  +E   + L  IAA +
Sbjct:   26 DKIKVMTQWRQAYSSGQDRIDFGQAVYRTFFKINPESVKLFHDVGG-----DDVTSGAFIAHTMRVLNGLEIIISLLDQPEALEAELKHLHQQHQERNLASGYFADFVKALDHVVPAQIGKCYDREAWNHCLTEIAADV 159
[Close]
BLAST of Hemoglobin C1 polymer vs. TrEMBL
Match: A0A183TC19 (GLOBIN domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS14015 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.808e-15
Identity = 33/81 (40.74%), Postives = 55/81 (67.90%), Query Frame = 2 
Query:  191 FQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVAT 433
            +++LFT +P YI+LFKRF ++ +LD I+ S+A KAH++RFI +++ + E LD    L ++LK +   H+ R +T N F  +
Sbjct:   11 YRQLFTKYPHYIRLFKRFRDLPNLDSIMQSAAFKAHAMRFIGAIDAIMENLDDESCLVELLKRLAEEHRPRGITENDFYVS 91
[Close]
BLAST of Hemoglobin C1 polymer vs. TrEMBL
Match: A0A448WCB0 (GLOBIN domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS1751 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.795e-14
Identity = 38/109 (34.86%), Postives = 64/109 (58.72%), Query Frame = 2 
Query:  218 EYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCS 544
            EY++LF++F ++ SL+E+  +    AH+LRFIN++  + E LD    L ++L+ +  SH+   VT  HF  T+ I  +V++  L S   +  +K +L+ A PII    S
Sbjct:    3 EYLQLFQQFRDLKSLEEVKQTHHFSAHALRFINAITEILECLDAENILSNVLEKLAQSHQKHKVTIEHFKVTLAIAQQVISPLLSSESSRNSLKMVLDEATPIISAAIS 111
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Cavefish
Match: cygb1 (cytoglobin-1-like [Source:NCBI gene;Acc:103043687])

HSP 1 Score: 54.299 bits (129), Expect = 4.658e-9
Identity = 33/118 (27.97%), Postives = 62/118 (52.54%), Query Frame = 2 
Query:  113 DKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLR-NVTCNHFVATVPILNEVLAE 463
            ++ I+   W+++   K+     G  +  RLFT  P   + F +F +    +E+ SS  +K H+LR +++LN + E ++  E+   +LK V  SH ++ +V   +F     ++ EVL E
Sbjct:   21 EQAIIQNTWTKVYQNKD---AAGVAVLMRLFTSFPSSKQFFSQFRDTEDPEELKSSVQLKKHALRVMSALNTLVENVNDEEKTAAVLKVVAKSHAIKHSVEPRYFKLLTGVILEVLVE 135
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Cavefish
Match: cygb1 (cytoglobin-1-like [Source:NCBI gene;Acc:103043687])

HSP 1 Score: 51.2174 bits (121), Expect = 4.418e-8
Identity = 27/97 (27.84%), Postives = 52/97 (53.61%), Query Frame = 2 
Query:  113 DKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLR 403
            ++ I+   W+++   K+     G  +  RLFT  P   + F +F +    +E+ SS  +K H+LR +++LN + E ++  E+   +LK V  SH ++
Sbjct:   21 EQAIIQNTWTKVYQNKD---AAGVAVLMRLFTSFPSSKQFFSQFRDTEDPEELKSSVQLKKHALRVMSALNTLVENVNDEEKTAAVLKVVAKSHAIK 114
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Cavefish
Match: ENSAMXT00000009473.2 (pep primary_assembly:Astyanax_mexicanus-2.0:3:30512080:30519327:-1 gene:ENSAMXG00000009218.2 transcript:ENSAMXT00000009473.2 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 50.0618 bits (118), Expect = 1.864e-7
Identity = 32/98 (32.65%), Postives = 50/98 (51.02%), Query Frame = 2 
Query:  101 ISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSH 394
            +S E KE++   WS+I   ++D  K G  +F RLF  HPE    F  F N+     + +S  ++AH LR ++ L      +D PE L  ++  +G  H
Sbjct:   24 LSKEQKELIKDSWSKI---QQDVTKAGIIMFVRLFENHPECKDAFFSFRNVED-PRVQASRELRAHGLRVMSFLEKSMARIDKPERLEKLVLELGRKH 117
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Cavefish
Match: xgb (neuroglobin-like [Source:NCBI gene;Acc:107197725])

HSP 1 Score: 50.0618 bits (118), Expect = 2.291e-7
Identity = 31/106 (29.25%), Postives = 50/106 (47.17%), Query Frame = 2 
Query:  158 KEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHF--------VATVPILNE 451
            +ED  K+G  +F RLF  HPE   +F  F ++  L+ + +S  ++AH LR ++ +      LD  E L  +   +G SH   N    ++         A  PIL +
Sbjct:   41 QEDIAKVGIIMFVRLFETHPECKDVFFLFRDVQDLERLRTSRELRAHGLRVMSFIEKSVARLDQLERLDMLAVELGKSHYRYNAPPKYYGYVGAEFICAVRPILKD 146
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Sea Lamprey
Match: CYGB (cytoglobin [Source:HGNC Symbol;Acc:HGNC:16505])

HSP 1 Score: 54.6842 bits (130), Expect = 3.935e-10
Identity = 31/94 (32.98%), Postives = 52/94 (55.32%), Query Frame = 2 
Query:  197 RLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSH--KLRNVTCNHFVATVPILNEVLAENLK 472
            RLFT HP   + F  F+++ + D++ +S+ ++ H+ R + SL+    +L  PEEL  +L+ VG SH  K   V   ++     I+ +VL E  K
Sbjct:    1 RLFTGHPASKQYFPMFKDLETADDLKASAKLRWHAGRVMGSLDKAVRSLRKPEELIKILRAVGLSHARKATPVDVKYYHILGGIIMDVLLETFK 94
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Nematostella
Match: EDO37414 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFV0])

HSP 1 Score: 49.2914 bits (116), Expect = 9.882e-8
Identity = 33/132 (25.00%), Postives = 65/132 (49.24%), Query Frame = 2 
Query:   95 MSISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKE 490
            M +S   K ++ + W  I   K+    +G+K F R F ++P+Y  LF  F+++ S +E+  ++A+  H+ R + ++     ++D        L+ +G  HK R +  ++  A    L + L   L+S   +E
Sbjct:   16 MPLSEAQKYLVRETWETIEPQKQT---VGKKAFLRFFDMNPDYQNLFPEFKSL-SYEELQKANALHGHAKRVMKAVENAVMSIDDVMSFSAYLEELGRRHKTRALKPSYLEAMHGALMDTLRNLLQSQWTEE 143
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Nematostella
Match: EDO43247 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RZB2])

HSP 1 Score: 45.8246 bits (107), Expect = 2.208e-6
Identity = 23/107 (21.50%), Postives = 58/107 (54.21%), Query Frame = 2 
Query:   92 KMSISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVT 412
            ++ +  ++ +++ K W+ +    + ++++G+ +F R F  HP    LF  F N+S+ ++I  S A+  H+ R + S++    +++  +     L  +G+ H+ R ++
Sbjct:   29 RIPLDAKETQLVRKTWAIL---GDRQVEVGKSLFLRFFEEHPTSKDLFPEFRNISN-EKIAESPALYGHARRVMKSVDNAVASIENVQVYSAYLYELGTRHQTRQLS 131
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Nematostella
Match: EDO48922 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RHV8])

HSP 1 Score: 44.669 bits (104), Expect = 7.072e-6
Identity = 22/93 (23.66%), Postives = 46/93 (49.46%), Query Frame = 2 
Query:  197 RLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKS 475
            R F ++P+Y KLF  F  +  + E+  ++A+  H+ R + ++      +D  E     L+++G+ HK R +   +  A      + + + LK+
Sbjct:   91 RFFEMNPDYQKLFPEFATLDQV-ELEQANALHGHAKRVMKAVENAVSAMDDAESFAAYLENLGARHKARALKPAYLDAMQVAYTDTIQDLLKT 182
[Close]
BLAST of Hemoglobin C1 polymer vs. Ensembl Medaka
Match: xgb (neuroglobin [Source:NCBI gene;Acc:101172860])

HSP 1 Score: 53.9138 bits (128), Expect = 1.030e-8
Identity = 33/106 (31.13%), Postives = 52/106 (49.06%), Query Frame = 2 
Query:  158 KEDKIKLGQKIFQRLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSH-------KLRNVTCNHFVATV-PILNE 451
            ++D  K+G  +F RLF  HPE   +F  F ++  L+ + ++  ++AH LR ++ +      LD PE L  +   +G SH       K  N     F+  V PIL E
Sbjct:   43 RDDIAKVGIIMFVRLFETHPECKDVFFLFRDVEDLERLRTNRELRAHGLRVMSFIEKSVARLDQPERLEALAVELGKSHYHYNAPPKYYNYVGAEFICAVQPILKE 148
[Close]
BLAST of Hemoglobin C1 polymer vs. Planmine SMEST
Match: SMESG000048630.1 (SMESG000048630.1)

HSP 1 Score: 239.195 bits (609), Expect = 7.856e-82
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 2 
Query:  197 RLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE 547
            RLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE
Sbjct:    3 RLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE 119
[Close]
BLAST of Hemoglobin C1 polymer vs. Planmine SMEST
Match: SMESG000022261.1 (SMESG000022261.1)

HSP 1 Score: 239.195 bits (609), Expect = 7.856e-82
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 2 
Query:  197 RLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE 547
            RLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE
Sbjct:    3 RLFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE 119
[Close]
BLAST of Hemoglobin C1 polymer vs. Planmine SMEST
Match: SMESG000048630.1 (SMESG000048630.1)

HSP 1 Score: 200.675 bits (509), Expect = 7.747e-67
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 2 
Query:  251 MSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE 547
            MSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE
Sbjct:    1 MSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE 99
[Close]
BLAST of Hemoglobin C1 polymer vs. Planmine SMEST
Match: SMESG000022262.1 (SMESG000022262.1)

HSP 1 Score: 182.185 bits (461), Expect = 1.753e-57
Identity = 83/116 (71.55%), Postives = 99/116 (85.34%), Query Frame = 2 
Query:  200 LFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE 547
            LF  HP++IKLF+RF+ M+SLDEII S+ +KAH+LRF+NSLNGVFETLD  EELGDMLKHVG SHKLR+VTC+HF ATVP+L E+L ENLKS + KE VK +L +AAPIILEGC E
Sbjct:  135 LFAAHPDFIKLFRRFDGMNSLDEIIQSTELKAHALRFMNSLNGVFETLDNAEELGDMLKHVGVSHKLRSVTCDHFAATVPVLQEILVENLKSKEAKEAVKFVLTLAAPIILEGCRE 250
[Close]
BLAST of Hemoglobin C1 polymer vs. Planmine SMEST
Match: SMESG000022262.1 (SMESG000022262.1)

HSP 1 Score: 182.185 bits (461), Expect = 2.440e-57
Identity = 83/116 (71.55%), Postives = 99/116 (85.34%), Query Frame = 2 
Query:  200 LFTIHPEYIKLFKRFENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSHKLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCSE 547
            LF  HP++IKLF+RF+ M+SLDEII S+ +KAH+LRF+NSLNGVFETLD  EELGDMLKHVG SHKLR+VTC+HF ATVP+L E+L ENLKS + KE VK +L +AAPIILEGC E
Sbjct:  150 LFAAHPDFIKLFRRFDGMNSLDEIIQSTELKAHALRFMNSLNGVFETLDNAEELGDMLKHVGVSHKLRSVTCDHFAATVPVLQEILVENLKSKEAKEAVKFVLTLAAPIILEGCRE 265
The following BLAST results are available for this feature:
BLAST of Hemoglobin C1 polymer vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 3
Match NameE-valueIdentityDescription
MB4.919e-634.62myoglobin [Source:HGNC Symbol;Acc:HGNC:6915][more]
MB6.812e-633.96myoglobin [Source:HGNC Symbol;Acc:HGNC:6915][more]
MB6.812e-633.96myoglobin [Source:HGNC Symbol;Acc:HGNC:6915][more]
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
glb-141.675e-723.97GLoBin related [Source:UniProtKB/TrEMBL;Acc:O1782... [more]
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
cygb11.928e-925.78cytoglobin 1 [Source:NCBI gene;Acc:246090][more]
xgb4.924e-827.41x globin [Source:ZFIN;Acc:ZDB-GENE-050125-1][more]
mb2.061e-626.67Danio rerio myoglobin (mb), transcript variant 2, ... [more]
mb2.061e-626.67Danio rerio myoglobin (mb), transcript variant 2, ... [more]
mb2.061e-626.67Danio rerio myoglobin (mb), transcript variant 2, ... [more]
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 2
Match NameE-valueIdentityDescription
cygb2.345e-827.87cytoglobin [Source:NCBI gene;Acc:448640][more]
fbxo416.646e-827.64F-box protein 41 [Source:Xenbase;Acc:XB-GENE-96690... [more]
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Hemoglobin C1 polymer vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|P80721|GLB_PAREP1.203e-923.45Globin-3 OS=Paramphistomum epiclitum OX=54403 PE=1... [more]
sp|P02218|GLB2_LUMTE7.142e-927.78Extracellular globin-2 OS=Lumbricus terrestris OX=... [more]
sp|Q8UUR3|CYGB1_DANRE1.594e-825.78Cytoglobin-1 OS=Danio rerio OX=7955 GN=cygb1 PE=2 ... [more]
sp|P02168|MYG_OTOCR3.024e-729.63Myoglobin OS=Otolemur crassicaudatus OX=9463 GN=MB... [more]
sp|P18202|GLB_TUBTU3.288e-726.32Globin, extracellular monomeric OS=Tubifex tubifex... [more]
back to top
BLAST of Hemoglobin C1 polymer vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0X3PJM21.331e-2737.04Globin OS=Schistocephalus solidus OX=70667 GN=GLB ... [more]
A0A183T8X64.645e-1837.84GLOBIN domain-containing protein OS=Schistocephalu... [more]
A0A410RH367.638e-1530.94Extracellular globin (Fragment) OS=Erpobdella octo... [more]
A0A183TC197.808e-1540.74GLOBIN domain-containing protein OS=Schistocephalu... [more]
A0A448WCB05.795e-1434.86GLOBIN domain-containing protein OS=Protopolystoma... [more]
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
cygb14.658e-927.97cytoglobin-1-like [Source:NCBI gene;Acc:103043687][more]
cygb14.418e-827.84cytoglobin-1-like [Source:NCBI gene;Acc:103043687][more]
ENSAMXT00000009473.21.864e-732.65pep primary_assembly:Astyanax_mexicanus-2.0:3:3051... [more]
xgb2.291e-729.25neuroglobin-like [Source:NCBI gene;Acc:107197725][more]
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CYGB3.935e-1032.98cytoglobin [Source:HGNC Symbol;Acc:HGNC:16505][more]
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO374149.882e-825.00Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO432472.208e-621.50Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO489227.072e-623.66Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Hemoglobin C1 polymer vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
xgb1.030e-831.13neuroglobin [Source:NCBI gene;Acc:101172860][more]
back to top
BLAST of Hemoglobin C1 polymer vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000048630.17.856e-82100.00SMESG000048630.1[more]
SMESG000022261.17.856e-82100.00SMESG000022261.1[more]
SMESG000048630.17.747e-67100.00SMESG000048630.1[more]
SMESG000022262.11.753e-5771.55SMESG000022262.1[more]
SMESG000022262.12.440e-5771.55SMESG000022262.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029834 ID=SMED30029834|Name=Hemoglobin C1 polymer|organism=Schmidtea mediterranea sexual|type=transcript|length=623bp
CTAAAATTAAACACCAATAACGAAGCTGTAAATGTTCAGTGATATTTATA
TTTGCACTTAAATAATATAATCATTTTTCACTAAATTTTTAAAAATGAGT
ATCTCGATAGAAGATAAAGAAATTCTTTGGAAAGAATGGAGCGAGATAGT
GTCAACTAAAGAGGATAAAATCAAACTCGGTCAAAAGATTTTTCAAAGGC
TGTTTACTATTCATCCGGAATACATAAAATTATTCAAAAGATTTGAAAAC
ATGTCTTCATTAGATGAAATTATTTCGAGTTCCGCGATGAAAGCTCATAG
TCTAAGATTTATAAATTCTTTGAATGGAGTTTTTGAGACTTTGGATACTC
CAGAAGAGCTTGGAGATATGCTGAAACACGTCGGATCAAGTCACAAATTA
CGAAATGTGACATGCAATCATTTTGTGGCAACAGTCCCAATCCTAAATGA
GGTGCTTGCTGAAAATTTGAAGTCTTGCAAGGTCAAAGAAATGGTTAAAA
ATATCCTCAATATTGCAGCGCCAATAATTTTAGAAGGATGTTCTGAATAG
AATTTAAAGATTTAATTAGTATTCATTATTTTACACACAAAATTAAAAAA
ATATTCACACTATTATTTTGAAT
back to top

protein sequence of SMED30029834-orf-1

>SMED30029834-orf-1 ID=SMED30029834-orf-1|Name=SMED30029834-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=152bp
MSISIEDKEILWKEWSEIVSTKEDKIKLGQKIFQRLFTIHPEYIKLFKRF
ENMSSLDEIISSSAMKAHSLRFINSLNGVFETLDTPEELGDMLKHVGSSH
KLRNVTCNHFVATVPILNEVLAENLKSCKVKEMVKNILNIAAPIILEGCS
E*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0000034epidermis
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR000971Globin
IPR012292Globin/Proto
IPR009050Globin-like_sf
Vocabulary: molecular function
TermDefinition
GO:0019825oxygen binding
GO:0020037heme binding
GO:0005344oxygen transporter activity
GO:0005506iron ion binding
GO:0046872metal ion binding
Vocabulary: cellular component
TermDefinition
GO:0005576extracellular region
GO:0005833hemoglobin complex
Vocabulary: biological process
TermDefinition
GO:0006810transport
GO:0015671oxygen transport
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000971GlobinPFAMPF00042Globincoord: 8..112
e-value: 2.6E-20
score: 73.0
IPR000971GlobinPROSITEPS01033GLOBINcoord: 3..127
score: 19.16
IPR012292Globin/ProtoglobinGENE3DG3DSA:1.10.490.10coord: 2..147
e-value: 2.3E-33
score: 116.8
NoneNo IPR availablePANTHERPTHR46458FAMILY NOT NAMEDcoord: 4..148
NoneNo IPR availableCDDcd01040Mb_likecoord: 21..135
e-value: 3.30644E-23
score: 86.3762
IPR009050Globin-like superfamilySUPERFAMILYSSF46458Globin-likecoord: 6..146