usf protein

Overview
Nameusf protein (AGZ94938.1)
Smed IDSMED30029786
Length (bp)2614
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of usf protein (SMED30029786) t-SNE clustered cells

Violin plots show distribution of expression levels for usf protein (SMED30029786) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of usf protein (SMED30029786) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for usf protein (SMED30029786) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30029786

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 8

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30029786h1SMcG0010002 dd_Smed_v4_4871_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30029786h1SMcG0010002 dd_Smed_v4_4871_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
muscle cellSMED30029786h1SMcG0010002 dd_Smed_v4_4871_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30029786h1SMcG0010002 dd_Smed_v4_4871_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
central nervous systemSMED30029786h1SMcG0010002 KF487123smed_ncbi_20240424PMID:24173799
Cowles et al., 2013		whole organism asexual adult colorimetric in situ hybridization evidence
progenitor cellSMED30029786h1SMcG0010002 KF487123smed_ncbi_20240424PMID:24173799
Cowles et al., 2013		whole organism asexual adult colorimetric in situ hybridization evidence
stem cellSMED30029786h1SMcG0010002 KF487123smed_ncbi_20240424PMID:24173799
Cowles et al., 2013		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymaSMED30029786h1SMcG0010002 KF487123smed_ncbi_20240424PMID:24173799
Cowles et al., 2013		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of usf protein vs. Ensembl Human
Match: USF2 (upstream transcription factor 2, c-fos interacting [Source:HGNC Symbol;Acc:HGNC:12594])

HSP 1 Score: 61.2326 bits (147), Expect = 2.743e-10
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 3 
Query: 1620 PVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P+F +S          I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P  N +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:   20 PLFFSSSC------RKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 141
[Close]
BLAST of usf protein vs. Ensembl Human
Match: USF2 (upstream transcription factor 2, c-fos interacting [Source:HGNC Symbol;Acc:HGNC:12594])

HSP 1 Score: 62.7734 bits (151), Expect = 2.886e-10
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P  N +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:   89 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 205
[Close]
BLAST of usf protein vs. Ensembl Human
Match: USF2 (upstream transcription factor 2, c-fos interacting [Source:HGNC Symbol;Acc:HGNC:12594])

HSP 1 Score: 63.5438 bits (153), Expect = 3.136e-10
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P  N +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:  153 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 269
[Close]
BLAST of usf protein vs. Ensembl Human
Match: USF2 (upstream transcription factor 2, c-fos interacting [Source:HGNC Symbol;Acc:HGNC:12594])

HSP 1 Score: 64.3142 bits (155), Expect = 3.747e-10
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P  N +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:  220 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 336
[Close]
BLAST of usf protein vs. Ensembl Human
Match: USF2 (upstream transcription factor 2, c-fos interacting [Source:HGNC Symbol;Acc:HGNC:12594])

HSP 1 Score: 58.5362 bits (140), Expect = 2.308e-8
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR 1853
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P  N +      SK  IL    DY R
Sbjct:  218 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIR 286
[Close]
BLAST of usf protein vs. Ensembl Celegans
Match: hlh-30 (Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86MJ3])

HSP 1 Score: 53.9138 bits (128), Expect = 3.915e-7
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 3 
Query: 1686 FKEMKRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFRV-QTD--QFSEVQVKCEKLTSENREKTAIIKKLE---AEK--EVLLSQLQYINQAVTNTVKSTQESLNRTSINH 2051
            +++ ++K  HN +ERRRR  IN  I EL  MLP N  E M LN  K  ILKA  DY RV Q D  Q  + Q + + L S   +    +K+LE   A +  +V  S L  I + +   +K   + ++ +  NH
Sbjct:  174 YRDRRKKDIHNMIERRRRYNINDRIKELGQMLPKNTSEDMKLN--KGTILKASCDYIRVLQKDREQAMKTQQQQKSLESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIK---QEIDESPPNH 300
[Close]
BLAST of usf protein vs. Ensembl Celegans
Match: hlh-30 (Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86MJ3])

HSP 1 Score: 53.9138 bits (128), Expect = 4.142e-7
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 3 
Query: 1686 FKEMKRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFRV-QTD--QFSEVQVKCEKLTSENREKTAIIKKLE---AEK--EVLLSQLQYINQAVTNTVKSTQESLNRTSINH 2051
            +++ ++K  HN +ERRRR  IN  I EL  MLP N  E M LN  K  ILKA  DY RV Q D  Q  + Q + + L S   +    +K+LE   A +  +V  S L  I + +   +K   + ++ +  NH
Sbjct:  199 YRDRRKKDIHNMIERRRRYNINDRIKELGQMLPKNTSEDMKLN--KGTILKASCDYIRVLQKDREQAMKTQQQQKSLESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIK---QEIDESPPNH 325
[Close]
BLAST of usf protein vs. Ensembl Celegans
Match: hlh-30 (Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86MJ3])

HSP 1 Score: 53.1434 bits (126), Expect = 4.443e-7
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 3 
Query: 1686 FKEMKRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFRV-QTD--QFSEVQVKCEKLTSENREKTAIIKKLE---AEK--EVLLSQLQYINQAVTNTVKSTQESLNRTSINH 2051
            +++ ++K  HN +ERRRR  IN  I EL  MLP N  E M LN  K  ILKA  DY RV Q D  Q  + Q + + L S   +    +K+LE   A +  +V  S L  I + +   +K   + ++ +  NH
Sbjct:   96 YRDRRKKDIHNMIERRRRYNINDRIKELGQMLPKNTSEDMKLN--KGTILKASCDYIRVLQKDREQAMKTQQQQKSLESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIK---QEIDESPPNH 222
[Close]
BLAST of usf protein vs. Ensembl Celegans
Match: hlh-30 (Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86MJ3])

HSP 1 Score: 53.1434 bits (126), Expect = 4.443e-7
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 3 
Query: 1686 FKEMKRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFRV-QTD--QFSEVQVKCEKLTSENREKTAIIKKLE---AEK--EVLLSQLQYINQAVTNTVKSTQESLNRTSINH 2051
            +++ ++K  HN +ERRRR  IN  I EL  MLP N  E M LN  K  ILKA  DY RV Q D  Q  + Q + + L S   +    +K+LE   A +  +V  S L  I + +   +K   + ++ +  NH
Sbjct:   96 YRDRRKKDIHNMIERRRRYNINDRIKELGQMLPKNTSEDMKLN--KGTILKASCDYIRVLQKDREQAMKTQQQQKSLESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIK---QEIDESPPNH 222
[Close]
BLAST of usf protein vs. Ensembl Celegans
Match: hlh-30 (Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86MJ3])

HSP 1 Score: 53.9138 bits (128), Expect = 4.530e-7
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 3 
Query: 1686 FKEMKRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFRV-QTD--QFSEVQVKCEKLTSENREKTAIIKKLE---AEK--EVLLSQLQYINQAVTNTVKSTQESLNRTSINH 2051
            +++ ++K  HN +ERRRR  IN  I EL  MLP N  E M LN  K  ILKA  DY RV Q D  Q  + Q + + L S   +    +K+LE   A +  +V  S L  I + +   +K   + ++ +  NH
Sbjct:  259 YRDRRKKDIHNMIERRRRYNINDRIKELGQMLPKNTSEDMKLN--KGTILKASCDYIRVLQKDREQAMKTQQQQKSLESTAHKYADRVKELEEMLARQGVQVPPSHLPPIPKVIERPIK---QEIDESPPNH 385
[Close]
BLAST of usf protein vs. Ensembl Fly
Match: Usf (gene:FBgn0029711 transcript:FBtr0070701)

HSP 1 Score: 53.1434 bits (126), Expect = 8.623e-7
Identity = 20/29 (68.97%), Postives = 27/29 (93.10%), Query Frame = 3 
Query: 1698 KRKSSHNEVERRRRDRINTWISELQNMLP 1784
            KR+++HNEVERRRRD+IN+WI +L+ MLP
Sbjct:  254 KRRATHNEVERRRRDKINSWIFKLKEMLP 282
[Close]
BLAST of usf protein vs. Ensembl Fly
Match: Usf (gene:FBgn0029711 transcript:FBtr0308917)

HSP 1 Score: 53.1434 bits (126), Expect = 8.623e-7
Identity = 20/29 (68.97%), Postives = 27/29 (93.10%), Query Frame = 3 
Query: 1698 KRKSSHNEVERRRRDRINTWISELQNMLP 1784
            KR+++HNEVERRRRD+IN+WI +L+ MLP
Sbjct:  254 KRRATHNEVERRRRDKINSWIFKLKEMLP 282
[Close]
BLAST of usf protein vs. Ensembl Zebrafish
Match: usf2 (upstream transcription factor 2, c-fos interacting [Source:ZFIN;Acc:ZDB-GENE-030131-8475])

HSP 1 Score: 59.6918 bits (143), Expect = 6.042e-9
Identity = 52/177 (29.38%), Postives = 88/177 (49.72%), Query Frame = 3 
Query: 1473 SNSTAN-ISVGIKKD--LSQSKVQKRLKIKPSKIHETXXXXXXXXXXXXXXXPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQ 1979
            S+ TA  +SV    D  L+Q+  Q  + + P  + +T      + + ++ ++ +       HS +   I+G    ++ +R++ HNEVERRRRD+IN WI  L  ++P  N +      SK  IL    DY R   QT+Q   E   + E++  +N      I+ L+ +  +L +QLQ
Sbjct:  140 SDGTATAVSVQATSDPTLTQAGGQFYVMMSPPDVLQTGTPRTIAPRTHTYSTDLGERETLQHSRSDWKIDGPRAPRDERRRAQHNEVERRRRDKINNWIVTLSKIIPDCNMDNTKTGASKGGILSKACDYIRELRQTNQRLQENYKEVERIQVDNELLRQQIEDLKNDNALLRAQLQ 316
[Close]
BLAST of usf protein vs. Ensembl Zebrafish
Match: usf1l (upstream transcription factor 1, like [Source:ZFIN;Acc:ZDB-GENE-040426-2269])

HSP 1 Score: 55.4546 bits (132), Expect = 4.938e-8
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 3 
Query: 1698 KRKSSHNEVERRRRDRINTWISELQNMLPN-NEKMTLNRSKSHILKAVYDYFR 1853
            KR++ HNEVERRRRD+IN WI +L   +P+       N+SKS IL    DY +
Sbjct:  162 KRRAQHNEVERRRRDKINQWIVQLSKTIPDCTYDAKNNQSKSGILSKACDYIQ 214
[Close]
BLAST of usf protein vs. Ensembl Zebrafish
Match: usf1 (upstream transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1072])

HSP 1 Score: 54.6842 bits (130), Expect = 1.718e-7
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFR 1853
            ++ KR++ HNEVERRRRD+IN WI +L   +P+   +     +SK  IL    DY +
Sbjct:  183 RDEKRRAQHNEVERRRRDKINNWIVQLSKTIPDCTIDSTKTGQSKGGILSKACDYIQ 239
[Close]
BLAST of usf protein vs. Ensembl Zebrafish
Match: usf1l (upstream transcription factor 1, like [Source:ZFIN;Acc:ZDB-GENE-040426-2269])

HSP 1 Score: 54.299 bits (129), Expect = 2.351e-7
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 3 
Query: 1698 KRKSSHNEVERRRRDRINTWISELQNMLPN-NEKMTLNRSKSHILKAVYDYFR 1853
            KR++ HNEVERRRRD+IN WI +L   +P+       N+SKS IL    DY +
Sbjct:  174 KRRAQHNEVERRRRDKINQWIVQLSKTIPDCTYDAKNNQSKSGILSKACDYIQ 226
[Close]
BLAST of usf protein vs. Ensembl Zebrafish
Match: usf1 (upstream transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1072])

HSP 1 Score: 53.5286 bits (127), Expect = 2.405e-7
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFR 1853
            ++ KR++ HNEVERRRRD+IN WI +L   +P+   +     +SK  IL    DY +
Sbjct:  116 RDEKRRAQHNEVERRRRDKINNWIVQLSKTIPDCTIDSTKTGQSKGGILSKACDYIQ 172
[Close]
BLAST of usf protein vs. Ensembl Xenopus
Match: usf2 (upstream transcription factor 2, c-fos interacting [Source:NCBI gene;Acc:493244])

HSP 1 Score: 64.3142 bits (155), Expect = 2.707e-10
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 3 
Query: 1647 HSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQ 1979
            +SP K  ++G+   ++ +R++ HNEVERRRRD+IN WI +L  ++P  N E      SK  IL    DY R   QT+Q   E   + E+L  +N      I++ + E  +L +QLQ
Sbjct:  202 YSPTK--MDGNRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNTESTKTGASKGGILSKACDYIRELRQTNQRMQETYKEAERLQMDNDLLRQQIEEHKNENALLRAQLQ 315
[Close]
BLAST of usf protein vs. Ensembl Xenopus
Match: usf2 (upstream transcription factor 2, c-fos interacting [Source:NCBI gene;Acc:493244])

HSP 1 Score: 61.6178 bits (148), Expect = 1.634e-9
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 3 
Query: 1647 HSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKM-TLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQ 1979
            +SP K  ++G+   ++ +R++ HNEVERRRRD+IN WI +L  ++P  N E   T  +SK  IL    DY R   QT+Q   E   + E+L  +N      I++ + E  +L +QLQ
Sbjct:  185 YSPTK--MDGNRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNTESTKTGAQSKGGILSKACDYIRELRQTNQRMQETYKEAERLQMDNDLLRQQIEEHKNENALLRAQLQ 299
[Close]
BLAST of usf protein vs. Ensembl Xenopus
Match: ipo9 (importin 9 [Source:Xenbase;Acc:XB-GENE-5960761])

HSP 1 Score: 51.6026 bits (122), Expect = 3.366e-6
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFR-VQTDQ--FSEVQVKCEKLTSENREKTAIIKKLEAE 1952
            KE ++K +HN +ERRRR  IN  I EL  ++P +    +  +K  ILKA  DY R +Q +Q    EV+ K +KL   NR     I++LE +
Sbjct:  148 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRSKEVENKQKKLEHANRHLLLRIQELEMQ 238
[Close]
BLAST of usf protein vs. Ensembl Xenopus
Match: ipo9 (importin 9 [Source:Xenbase;Acc:XB-GENE-5960761])

HSP 1 Score: 51.6026 bits (122), Expect = 4.508e-6
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFR-VQTDQ--FSEVQVKCEKLTSENREKTAIIKKLEAE 1952
            KE ++K +HN +ERRRR  IN  I EL  ++P +    +  +K  ILKA  DY R +Q +Q    EV+ K +KL   NR     I++LE +
Sbjct:  237 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRSKEVENKQKKLEHANRHLLLRIQELEMQ 327
[Close]
BLAST of usf protein vs. Ensembl Xenopus
Match: ipo9 (importin 9 [Source:Xenbase;Acc:XB-GENE-5960761])

HSP 1 Score: 51.6026 bits (122), Expect = 4.578e-6
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFR-VQTDQ--FSEVQVKCEKLTSENREKTAIIKKLEAE 1952
            KE ++K +HN +ERRRR  IN  I EL  ++P +    +  +K  ILKA  DY R +Q +Q    EV+ K +KL   NR     I++LE +
Sbjct:  236 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRSKEVENKQKKLEHANRHLLLRIQELEMQ 326
[Close]
BLAST of usf protein vs. Ensembl Mouse
Match: Usf2 (upstream transcription factor 2 [Source:MGI Symbol;Acc:MGI:99961])

HSP 1 Score: 62.003 bits (149), Expect = 6.715e-10
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P+   +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:  153 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 269
[Close]
BLAST of usf protein vs. Ensembl Mouse
Match: Usf2 (upstream transcription factor 2 [Source:MGI Symbol;Acc:MGI:99961])

HSP 1 Score: 62.3882 bits (150), Expect = 6.885e-10
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P+   +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:  193 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 309
[Close]
BLAST of usf protein vs. Ensembl Mouse
Match: Usf2 (upstream transcription factor 2 [Source:MGI Symbol;Acc:MGI:99961])

HSP 1 Score: 60.8474 bits (146), Expect = 7.189e-10
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P+   +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:   89 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 205
[Close]
BLAST of usf protein vs. Ensembl Mouse
Match: Usf2 (upstream transcription factor 2 [Source:MGI Symbol;Acc:MGI:99961])

HSP 1 Score: 62.7734 bits (151), Expect = 7.462e-10
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P+   +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:  220 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 336
[Close]
BLAST of usf protein vs. Ensembl Mouse
Match: Usf2 (upstream transcription factor 2 [Source:MGI Symbol;Acc:MGI:99961])

HSP 1 Score: 57.3806 bits (137), Expect = 3.046e-8
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQ 1979
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P+      + SK+    A  DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ
Sbjct:  175 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHA---DNSKT---GAACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQ 280
[Close]
BLAST of usf protein vs. UniProt/SwissProt
Match: sp|Q15853|USF2_HUMAN (Upstream stimulatory factor 2 OS=Homo sapiens OX=9606 GN=USF2 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.800e-9
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P  N +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:  220 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 336
[Close]
BLAST of usf protein vs. UniProt/SwissProt
Match: sp|Q63665|USF2_RAT (Upstream stimulatory factor 2 OS=Rattus norvegicus OX=10116 GN=Usf2 PE=1 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 5.220e-9
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P+   +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:  220 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 336
[Close]
BLAST of usf protein vs. UniProt/SwissProt
Match: sp|Q64705|USF2_MOUSE (Upstream stimulatory factor 2 OS=Mus musculus OX=10090 GN=Usf2 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.220e-9
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYIN 1988
            P    I+G    ++ +R++ HNEVERRRRD+IN WI +L  ++P+   +      SK  IL    DY R   QT+Q   E   + E+L  +N      I++L+ E  +L +QLQ  N
Sbjct:  220 PYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQHN 336
[Close]
BLAST of usf protein vs. UniProt/SwissProt
Match: sp|Q6XBT4|USF1_BOVIN (Upstream stimulatory factor 1 OS=Bos taurus OX=9913 GN=USF1 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.413e-7
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFR 1853
            ++ KR++ HNEVERRRRD+IN WI +L  ++P+   E     +SK  IL    DY +
Sbjct:  196 RDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQ 252
[Close]
BLAST of usf protein vs. UniProt/SwissProt
Match: sp|O02818|USF1_RABIT (Upstream stimulatory factor 1 OS=Oryctolagus cuniculus OX=9986 GN=USF1 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.561e-7
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFR 1853
            ++ KR++ HNEVERRRRD+IN WI +L  ++P+   E     +SK  IL    DY +
Sbjct:  196 RDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQ 252
[Close]
BLAST of usf protein vs. TrEMBL
Match: U5YQF2 (Usf protein (Fragment) OS=Schmidtea mediterranea OX=79327 GN=usf PE=2 SV=1)

HSP 1 Score: 1078.54 bits (2788), Expect = 0.000e+0
Identity = 589/590 (99.83%), Postives = 590/590 (100.00%), Query Frame = 3 
Query:  357 MDDENNSNNNQPMKXXXXXXXXXXXXXXASLLKSLSQNSVSICETPVTSISEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNGKRNKSQYNAEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLDNQNGQVYLLVKSDAVQAIDXXXXXXXXXXXXXXXXPVQFSSDMGIEMASSDNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIMTNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAEVTLLVDDENSVSNSQFPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFSNQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKPSKIHETXXXXXXXXXXXXXXXPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSD 2126
            MDDENNSNNNQPMKINSNDLSNDISINLASLLKSLSQNSVSICETPVTSISEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNGKRNKSQY+AEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLDNQNGQVYLLVKSDAVQAIDSSNNFSNLLQSNNYSQPVQFSSDMGIEMASSDNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIMTNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAEVTLLVDDENSVSNSQFPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFSNQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKPSKIHETSAQSDSSSKAYSSNSPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSD
Sbjct:    1 MDDENNSNNNQPMKINSNDLSNDISINLASLLKSLSQNSVSICETPVTSISEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNGKRNKSQYDAEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLDNQNGQVYLLVKSDAVQAIDSSNNFSNLLQSNNYSQPVQFSSDMGIEMASSDNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIMTNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAEVTLLVDDENSVSNSQFPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFSNQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKPSKIHETSAQSDSSSKAYSSNSPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSD 590
[Close]
BLAST of usf protein vs. TrEMBL
Match: A0A0X3NR99 (Upstream stimulatory factor 1 OS=Schistocephalus solidus OX=70667 GN=USF1 PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.432e-13
Identity = 49/120 (40.83%), Postives = 76/120 (63.33%), Query Frame = 3 
Query: 1623 VFSTSQADHSPNKEYING-DGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN-NEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQL 1976
            VF  S++  SPN+ YI+   G+ K+++R+ SHNEVERRRRDRINTWI+EL  +LP  ++  +  +SK  ILK V++YF+      S      EKL+ +N+     +++L  E ++L + L
Sbjct:   97 VFFPSES--SPNRSYISRIGGDTKDIRRRVSHNEVERRRRDRINTWIAELHKLLPPEHQAKSQYQSKGVILKRVFEYFQNVAQILSSKSTTIEKLSEKNQALEQELRQLNRENQLLRASL 214
[Close]
BLAST of usf protein vs. TrEMBL
Match: A0A183SLG0 (BHLH domain-containing protein OS=Schistocephalus solidus OX=70667 GN=SSLN_LOCUS5058 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.277e-13
Identity = 49/120 (40.83%), Postives = 76/120 (63.33%), Query Frame = 3 
Query: 1623 VFSTSQADHSPNKEYING-DGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN-NEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQL 1976
            VF  S++  SPN+ YI+   G+ K+++R+ SHNEVERRRRDRINTWI+EL  +LP  ++  +  +SK  ILK V++YF+      S      EKL+ +N+     +++L  E ++L + L
Sbjct:  370 VFFPSES--SPNRSYISRIGGDTKDIRRRVSHNEVERRRRDRINTWIAELHKLLPPEHQAKSQYQSKGVILKRVFEYFQNVAQILSSKSTTIEKLSEKNQALEQELRQLNRENQLLRASL 487
[Close]
BLAST of usf protein vs. TrEMBL
Match: A0A504Z9Q9 (Putative Upstream transcription factor 1 usf1 OS=Fasciola gigantica OX=46835 GN=FGIG_02023 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.299e-11
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 3 
Query: 1662 EYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKM-TLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAV 1997
            E++N   E K+M+R+ SHNEVERRRRDRINTWISEL  +LP +E+  +  +SK  +LK V +YF+             E+   EN      +  LE E ++L + LQ    A 
Sbjct:  938 EHLNP--ESKDMRRRVSHNEVERRRRDRINTWISELYKLLPPDEQAKSQYQSKGVVLKGVCEYFQNVDSMLKAANAAVEQTRVENGLLRQRVHDLEQENQLLSASLQLGAAAA 1048
[Close]
BLAST of usf protein vs. TrEMBL
Match: A0A448WES0 (BHLH domain-containing protein OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS3262 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.322e-11
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 3 
Query: 1647 HSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLN-RSKSHILKAVYDYF 1850
            HSP         + K+++R+ SHNEVERRRRDRINTWI+EL  +LP NE+     +SK  +LK V +YF
Sbjct:  108 HSPGTFIDQMSPDTKDLRRRVSHNEVERRRRDRINTWIAELHKLLPPNEQAKAQYQSKGMVLKRVCEYF 176
[Close]
BLAST of usf protein vs. Ensembl Cavefish
Match: usf2 (upstream transcription factor 2, c-fos interacting [Source:NCBI gene;Acc:103033251])

HSP 1 Score: 56.6102 bits (135), Expect = 3.973e-8
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 3 
Query: 1668 INGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR 1853
            ++G    ++ +R++ HNEVERRRRD+IN WI  L  ++P  N +      SK  IL    DY R
Sbjct:  194 VDGPRAPRDERRRAQHNEVERRRRDKINNWIVTLSKIIPDCNMDNTKTGASKGGILSKACDYIR 257
[Close]
BLAST of usf protein vs. Ensembl Cavefish
Match: usf2 (upstream transcription factor 2, c-fos interacting [Source:NCBI gene;Acc:103033251])

HSP 1 Score: 56.9954 bits (136), Expect = 4.011e-8
Identity = 27/71 (38.03%), Postives = 39/71 (54.93%), Query Frame = 3 
Query: 1647 HSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR 1853
            H  +   ++G    ++ +R++ HNEVERRRRD+IN WI  L  ++P  N +      SK  IL    DY R
Sbjct:  202 HGSSNWKVDGPRAPRDERRRAQHNEVERRRRDKINNWIVTLSKIIPDCNMDNTKTGASKGGILSKACDYIR 272
[Close]
BLAST of usf protein vs. Ensembl Cavefish
Match: usf1 (upstream transcription factor 1 [Source:NCBI gene;Acc:103024707])

HSP 1 Score: 54.299 bits (129), Expect = 2.443e-7
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 3 
Query: 1698 KRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFR 1853
            KR++ HNEVERRRRD+IN WI +L   +P+   +     +SK  IL    DY +
Sbjct:  198 KRRAQHNEVERRRRDKINNWIVQLSKTIPDCTLDATKTGQSKGGILSKACDYIQ 251
[Close]
BLAST of usf protein vs. Ensembl Cavefish
Match: usf1 (upstream transcription factor 1 [Source:NCBI gene;Acc:103024707])

HSP 1 Score: 53.9138 bits (128), Expect = 2.993e-7
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 3 
Query: 1698 KRKSSHNEVERRRRDRINTWISELQNMLPNN--EKMTLNRSKSHILKAVYDYFR 1853
            KR++ HNEVERRRRD+IN WI +L   +P+   +     +SK  IL    DY +
Sbjct:  177 KRRAQHNEVERRRRDKINNWIVQLSKTIPDCTLDATKTGQSKGGILSKACDYIQ 230
[Close]
BLAST of usf protein vs. Ensembl Cavefish
Match: usf1l (upstream stimulatory factor 1-like [Source:NCBI gene;Acc:103042741])

HSP 1 Score: 52.7582 bits (125), Expect = 7.362e-7
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 3 
Query: 1698 KRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLN-----RSKSHILKAVYDYFR 1853
            KR++ HNEVERRRRD+IN WI +L   +P+    TL+     +SK  IL    DY +
Sbjct:  181 KRRAQHNEVERRRRDKINNWIVQLSKTIPD---CTLDATKNSQSKGGILSKACDYIQ 234
[Close]
BLAST of usf protein vs. Ensembl Sea Lamprey
Match: USF2 (upstream transcription factor 2, c-fos interacting [Source:HGNC Symbol;Acc:HGNC:12594])

HSP 1 Score: 55.4546 bits (132), Expect = 9.053e-9
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDYFR--VQTDQFSEVQVK-CEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKS 2015
            P    + G    ++ +R++ HNEVERRRRD+IN WI EL   +P+  N+     +SK  +L    +Y +   QT+Q  E ++K  E+   E+       ++L+ E  +L +QLQ     V  +V  
Sbjct:   94 PYTPKLEGPRTPRDERRRAQHNEVERRRRDKINNWIVELSKYIPDCANDHTKSVQSKGGVLSKACEYIQELRQTNQRMEEELKEAERTQLEHELLMQQFEELKNESALLRTQLQQHGIEVVGSVPG 219
[Close]
BLAST of usf protein vs. Ensembl Sea Lamprey
Match: USF2 (upstream transcription factor 2, c-fos interacting [Source:HGNC Symbol;Acc:HGNC:12594])

HSP 1 Score: 55.0694 bits (131), Expect = 3.297e-8
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 3 
Query: 1653 PNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDYFR--VQTDQFSEVQVK-CEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKS 2015
            P    + G    ++ +R++ HNEVERRRRD+IN WI EL   +P+  N+     +SK  +L    +Y +   QT+Q  E ++K  E+   E+       ++L+ E  +L +QLQ     V  +V  
Sbjct:  223 PYTPKLEGPRTPRDERRRAQHNEVERRRRDKINNWIVELSKYIPDCANDHTKSVQSKGGVLSKACEYIQELRQTNQRMEEELKEAERTQLEHELLMQQFEELKNESALLRTQLQQHGIEVVGSVPG 348
[Close]
BLAST of usf protein vs. Ensembl Sea Lamprey
Match: mitfa (melanocyte inducing transcription factor a [Source:ZFIN;Acc:ZDB-GENE-990910-11])

HSP 1 Score: 47.3654 bits (111), Expect = 5.140e-6
Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYF-RVQTDQ--FSEVQVKCEKLTSENREKTAIIKKLEAE 1952
            KE ++K +HN +ERRRR  IN  I EL  ++P +    +  +K  ILKA  DY  R+Q +Q    E++ +  +L   NR     +++LE +
Sbjct:    9 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRRLQKEQQRVKEMENRQRRLEQTNRGLIMRMQELEMQ 99
[Close]
BLAST of usf protein vs. Ensembl Nematostella
Match: EDO39334 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SAA2])

HSP 1 Score: 59.3066 bits (142), Expect = 1.308e-9
Identity = 34/102 (33.33%), Postives = 58/102 (56.86%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDY---FRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQ 1979
            ++ KR+++HNEVERRRRD+IN WI++L  ++P+  +++    +SK  IL    DY    R    + +E     E+L  +N       +++  E  +L +QLQ
Sbjct:  127 RDEKRRATHNEVERRRRDKINGWITKLAKVVPDCSSDQTKTGQSKGGILAKTVDYITDLRAANARMAETIKDSEQLAIDNELLRQQNEEVRQENAMLRAQLQ 228
[Close]
BLAST of usf protein vs. Ensembl Nematostella
Match: EDO28110 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T7E1])

HSP 1 Score: 56.6102 bits (135), Expect = 1.727e-9
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 3 
Query: 1668 INGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPN--NEKMTLNRSKSHILKAVYDYF 1850
            + G    ++ KR+++HNEVERRRRD+IN WI++L  ++P+  +++    +SK  IL    DY 
Sbjct:   14 LEGPRGARDEKRRATHNEVERRRRDKINGWITKLAKVVPDCSSDQTKTGQSKGGILAKTVDYI 76
[Close]
BLAST of usf protein vs. Ensembl Nematostella
Match: EDO26819 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7TAZ8])

HSP 1 Score: 48.9062 bits (115), Expect = 5.604e-7
Identity = 34/131 (25.95%), Postives = 68/131 (51.91%), Query Frame = 3 
Query: 1668 INGDGE-FKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQ---FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLL------SQLQYINQAVTNTVKSTQESL 2030
            ++GD + F++   K +H+E+E+RRRD++NT+I+EL  M+P    M+    K  +L+    + R    +   F+E   K   L+ E+ +       LEA    L        ++ Y++ ++ N++  +Q ++
Sbjct:    1 MSGDSKGFQKGAIKQNHSEIEKRRRDKMNTYINELSTMIPMCNAMSRKLDKLTVLRMAVQHMRALRGRAVPFTETNYKPAFLSDEDLKNLV----LEAADGFLFVVGCDRGRILYVSDSIQNSLYLSQVTI 127
[Close]
BLAST of usf protein vs. Ensembl Medaka
Match: ENSORLT00000018944.2 (upstream transcription factor 2, c-fos interacting [Source:NCBI gene;Acc:101157563])

HSP 1 Score: 57.7658 bits (138), Expect = 2.037e-8
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 3 
Query: 1668 INGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQ 1979
            ++G    ++ +R++ HNEVERRRRD+IN WI  L  ++P  N +      SK  IL    DY R   Q++Q   E   + E++  +N      I++L+ E  +L +QLQ
Sbjct:  197 MDGPRTPRDERRRAQHNEVERRRRDKINNWIVTLSKIIPDCNMDSTKTGASKGGILSKACDYIRELRQSNQRLQESLKEVERIQMDNELCRQQIEELKNENALLRAQLQ 305
[Close]
BLAST of usf protein vs. Ensembl Medaka
Match: ENSORLT00000018950.2 (upstream transcription factor 2, c-fos interacting [Source:NCBI gene;Acc:101157563])

HSP 1 Score: 57.3806 bits (137), Expect = 2.614e-8
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 3 
Query: 1668 INGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLP--NNEKMTLNRSKSHILKAVYDYFR--VQTDQ-FSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQ 1979
            ++G    ++ +R++ HNEVERRRRD+IN WI  L  ++P  N +      SK  IL    DY R   Q++Q   E   + E++  +N      I++L+ E  +L +QLQ
Sbjct:  204 MDGPRTPRDERRRAQHNEVERRRRDKINNWIVTLSKIIPDCNMDSTKTGASKGGILSKACDYIRELRQSNQRLQESLKEVERIQMDNELCRQQIEELKNENALLRAQLQ 312
[Close]
BLAST of usf protein vs. Ensembl Medaka
Match: usf2 (upstream stimulatory factor 2 [Source:NCBI gene;Acc:101164660])

HSP 1 Score: 53.1434 bits (126), Expect = 3.945e-7
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLN-RSKSHILKAVYDYFR 1853
            ++ +R++ HNEVERRRRD+IN WI  L  ++P+    + +  SK  IL    DY R
Sbjct:  149 RDERRRAQHNEVERRRRDKINNWIVTLSKLIPDCSVDSRSAASKGGILSKACDYIR 204
[Close]
BLAST of usf protein vs. Ensembl Medaka
Match: usf2 (upstream stimulatory factor 2 [Source:NCBI gene;Acc:101164660])

HSP 1 Score: 53.5286 bits (127), Expect = 4.316e-7
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLN-RSKSHILKAVYDYFR 1853
            ++ +R++ HNEVERRRRD+IN WI  L  ++P+    + +  SK  IL    DY R
Sbjct:  192 RDERRRAQHNEVERRRRDKINNWIVTLSKLIPDCSVDSRSAASKGGILSKACDYIR 247
[Close]
BLAST of usf protein vs. Ensembl Medaka
Match: usf2 (upstream stimulatory factor 2 [Source:NCBI gene;Acc:101164660])

HSP 1 Score: 53.5286 bits (127), Expect = 4.325e-7
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 3 
Query: 1689 KEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLN-RSKSHILKAVYDYFR 1853
            ++ +R++ HNEVERRRRD+IN WI  L  ++P+    + +  SK  IL    DY R
Sbjct:  192 RDERRRAQHNEVERRRRDKINNWIVTLSKLIPDCSVDSRSAASKGGILSKACDYIR 247
[Close]
BLAST of usf protein vs. Planmine SMEST
Match: SMESG000064300.1 (SMESG000064300.1)

HSP 1 Score: 1043.11 bits (2696), Expect = 0.000e+0
Identity = 574/590 (97.29%), Postives = 575/590 (97.46%), Query Frame = 3 
Query:  357 MDDENNSNNNQPMKXXXXXXXXXXXXXXASLLKSLSQNSVSICETPVTSISEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNGKRNKSQYNAEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLDNQNGQVYLLVKSDAVQAIDXXXXXXXXXXXXXXXXPVQFSSDMGIEMASSDNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIMTNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAEVTLLVDDENSVSNSQFPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFSNQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKPSKIHETXXXXXXXXXXXXXXXPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSD 2126
            MDDENNSNNNQPMKINSNDLSNDISINLASLLKSLSQNSVSICETPVTSISEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNGKRNKSQY+AEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLDNQNGQVYLLVKSDAVQAIDSSNNFSNLLQSNNYSQPVQFSSDMGIEMASSDNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIMTNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAE               FPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFSNQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKPSKIHETSAQSDSSSKAYSSNSPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSD
Sbjct:    1 MDDENNSNNNQPMKINSNDLSNDISINLASLLKSLSQNSVSICETPVTSISEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNGKRNKSQYDAEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLDNQNGQVYLLVKSDAVQAIDSSNNFSNLLQSNNYSQPVQFSSDMGIEMASSDNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIMTNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAE---------------FPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFSNQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKPSKIHETSAQSDSSSKAYSSNSPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSD 575

HSP 2 Score: 55.0694 bits (131), Expect = 2.155e-7
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 2 
Query: 2126 CNNYSNSYIIDNQNKKRKFSENETIKKL 2209
             NNYSNSYIIDNQNKKRKFSENETIKKL
Sbjct:  576 VNNYSNSYIIDNQNKKRKFSENETIKKL 603
[Close]
BLAST of usf protein vs. Planmine SMEST
Match: SMESG000064300.1 (SMESG000064300.1)

HSP 1 Score: 1021.92 bits (2641), Expect = 0.000e+0
Identity = 546/562 (97.15%), Postives = 547/562 (97.33%), Query Frame = 3 
Query:  441 ASLLKSLSQNSVSICETPVTSISEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNGKRNKSQYNAEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLDNQNGQVYLLVKSDAVQAIDXXXXXXXXXXXXXXXXPVQFSSDMGIEMASSDNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIMTNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAEVTLLVDDENSVSNSQFPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFSNQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKPSKIHETXXXXXXXXXXXXXXXPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSD 2126
            ASLLKSLSQNSVSICETPVTSISEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNGKRNKSQY+AEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLDNQNGQVYLLVKSDAVQAIDSSNNFSNLLQSNNYSQPVQFSSDMGIEMASSDNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIMTNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAE               FPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFSNQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKPSKIHETSAQSDSSSKAYSSNSPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSD
Sbjct:   17 ASLLKSLSQNSVSICETPVTSISEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNGKRNKSQYDAEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLDNQNGQVYLLVKSDAVQAIDSSNNFSNLLQSNNYSQPVQFSSDMGIEMASSDNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIMTNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAE---------------FPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFSNQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKPSKIHETSAQSDSSSKAYSSNSPVFSTSQADHSPNKEYINGDGEFKEMKRKSSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRVQTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNTVKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSD 563

HSP 2 Score: 55.0694 bits (131), Expect = 2.112e-7
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 2 
Query: 2126 CNNYSNSYIIDNQNKKRKFSENETIKKL 2209
             NNYSNSYIIDNQNKKRKFSENETIKKL
Sbjct:  564 VNNYSNSYIIDNQNKKRKFSENETIKKL 591
The following BLAST results are available for this feature:
BLAST of usf protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
USF22.743e-1035.16upstream transcription factor 2, c-fos interacting... [more]
USF22.886e-1036.75upstream transcription factor 2, c-fos interacting... [more]
USF23.136e-1036.75upstream transcription factor 2, c-fos interacting... [more]
USF23.747e-1036.75upstream transcription factor 2, c-fos interacting... [more]
USF22.308e-840.58upstream transcription factor 2, c-fos interacting... [more]
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BLAST of usf protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5
Match NameE-valueIdentityDescription
hlh-303.915e-735.61Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86... [more]
hlh-304.142e-735.61Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86... [more]
hlh-304.443e-735.61Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86... [more]
hlh-304.443e-735.61Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86... [more]
hlh-304.530e-735.61Helix Loop Helix [Source:UniProtKB/TrEMBL;Acc:Q86... [more]
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BLAST of usf protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
Usf8.623e-768.97gene:FBgn0029711 transcript:FBtr0070701[more]
Usf8.623e-768.97gene:FBgn0029711 transcript:FBtr0308917[more]
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BLAST of usf protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
usf26.042e-929.38upstream transcription factor 2, c-fos interacting... [more]
usf1l4.938e-849.06upstream transcription factor 1, like [Source:ZFIN... [more]
usf11.718e-742.11upstream transcription factor 1 [Source:ZFIN;Acc:Z... [more]
usf1l2.351e-749.06upstream transcription factor 1, like [Source:ZFIN... [more]
usf12.405e-742.11upstream transcription factor 1 [Source:ZFIN;Acc:Z... [more]
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BLAST of usf protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
usf22.707e-1037.07upstream transcription factor 2, c-fos interacting... [more]
usf21.634e-937.61upstream transcription factor 2, c-fos interacting... [more]
ipo93.366e-639.56importin 9 [Source:Xenbase;Acc:XB-GENE-5960761][more]
ipo94.508e-639.56importin 9 [Source:Xenbase;Acc:XB-GENE-5960761][more]
ipo94.578e-639.56importin 9 [Source:Xenbase;Acc:XB-GENE-5960761][more]
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BLAST of usf protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Usf26.715e-1035.90upstream transcription factor 2 [Source:MGI Symbol... [more]
Usf26.885e-1035.90upstream transcription factor 2 [Source:MGI Symbol... [more]
Usf27.189e-1035.90upstream transcription factor 2 [Source:MGI Symbol... [more]
Usf27.462e-1035.90upstream transcription factor 2 [Source:MGI Symbol... [more]
Usf23.046e-835.71upstream transcription factor 2 [Source:MGI Symbol... [more]
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BLAST of usf protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q15853|USF2_HUMAN1.800e-936.75Upstream stimulatory factor 2 OS=Homo sapiens OX=9... [more]
sp|Q63665|USF2_RAT5.220e-935.90Upstream stimulatory factor 2 OS=Rattus norvegicus... [more]
sp|Q64705|USF2_MOUSE5.220e-935.90Upstream stimulatory factor 2 OS=Mus musculus OX=1... [more]
sp|Q6XBT4|USF1_BOVIN5.413e-743.86Upstream stimulatory factor 1 OS=Bos taurus OX=991... [more]
sp|O02818|USF1_RABIT5.561e-743.86Upstream stimulatory factor 1 OS=Oryctolagus cunic... [more]
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BLAST of usf protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
U5YQF20.000e+099.83Usf protein (Fragment) OS=Schmidtea mediterranea O... [more]
A0A0X3NR992.432e-1340.83Upstream stimulatory factor 1 OS=Schistocephalus s... [more]
A0A183SLG06.277e-1340.83BHLH domain-containing protein OS=Schistocephalus ... [more]
A0A504Z9Q92.299e-1140.71Putative Upstream transcription factor 1 usf1 OS=F... [more]
A0A448WES02.322e-1150.72BHLH domain-containing protein OS=Protopolystoma x... [more]
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BLAST of usf protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
usf23.973e-840.63upstream transcription factor 2, c-fos interacting... [more]
usf24.011e-838.03upstream transcription factor 2, c-fos interacting... [more]
usf12.443e-744.44upstream transcription factor 1 [Source:NCBI gene;... [more]
usf12.993e-744.44upstream transcription factor 1 [Source:NCBI gene;... [more]
usf1l7.362e-745.61upstream stimulatory factor 1-like [Source:NCBI ge... [more]
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BLAST of usf protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3
Match NameE-valueIdentityDescription
USF29.053e-931.75upstream transcription factor 2, c-fos interacting... [more]
USF23.297e-831.75upstream transcription factor 2, c-fos interacting... [more]
mitfa5.140e-635.16melanocyte inducing transcription factor a [Source... [more]
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BLAST of usf protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of usf protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3
Match NameE-valueIdentityDescription
EDO393341.308e-933.33Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO281101.727e-939.68Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO268195.604e-725.95Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of usf protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ENSORLT00000018944.22.037e-834.86upstream transcription factor 2, c-fos interacting... [more]
ENSORLT00000018950.22.614e-834.86upstream transcription factor 2, c-fos interacting... [more]
usf23.945e-742.86upstream stimulatory factor 2 [Source:NCBI gene;Ac... [more]
usf24.316e-742.86upstream stimulatory factor 2 [Source:NCBI gene;Ac... [more]
usf24.325e-742.86upstream stimulatory factor 2 [Source:NCBI gene;Ac... [more]
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BLAST of usf protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000064300.12.155e-797.29SMESG000064300.1[more]
SMESG000064300.12.112e-797.15SMESG000064300.1[more]
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Cross References
External references for this transcript
DatabaseAccession
SmedGD GBrowseSMED30029786
GenBankAGZ94938.1
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029786 ID=SMED30029786|Name=usf protein|organism=Schmidtea mediterranea sexual|type=transcript|length=2614bp
TGATAAACTTAGTTTTAGTTATAAAATTCTATCTTGTAAATAACCTATTC
AAAATTTTAAAATTTTACCAATTATTTAAAAAAAAACTTATAAAATGTTT
ATCTAATTTAGAAAAATTAATTTTATATAGATAAATTTAAAAATTTCTAT
TATTGTTTATATTCTTTCTGTTTCGATTTGTTCCCGTGACTTTTTGTACA
AGTCACTTGACCAAAATTTGCAATCAGGTGATAATTTACTTTGCTAAATG
TCCTTTAATGCCCTTTGAGTAAAATTAATGTTATTCTCTTGGTTGCAAAT
AATTTTAACTGGATGTAAATTAATTTAGCTAATAACAGGCAAAAATTGTG
CCTGATATGGATGATGAAAATAATAGTAATAATAATCAACCTATGAAAAT
TAATTCAAATGATCTTTCAAACGATATATCTATAAATTTAGCGAGTCTAT
TGAAAAGTTTATCGCAAAATTCAGTTTCCATTTGTGAAACCCCGGTTACT
TCTATCTCTGAAATAAATCTTGATATTGAAAATTATGATCAAAATATTCA
CCGAAATAAAGCAGAAGGTGAAGACTTTGGGGAAATTAAATCAGAATCAT
TTCTTAATCAACTCGCTAACAATGACCGTATGCTTAATATAGATTATATG
AATGGAAAACGAAATAAATCTCAGTACAATGCTGAGATCAACAAATCATT
ACAAAATGTTAAGCTTATCTCCAAATTAACTAACACTAAATTTTCATCAA
ATGTTAATACATTAAACTCGATGCAAAACATATCGGCCATAAAGTCCCTA
TTAGACAATCAAAATGGCCAAGTTTATTTATTAGTAAAAAGTGATGCTGT
TCAAGCTATTGATTCCTCAAATAACTTTTCGAATTTATTGCAATCAAATA
ATTATTCTCAGCCAGTCCAGTTTTCATCAGACATGGGTATCGAAATGGCA
TCATCAGATAATTGTTCAAGCTTAAATAATTCAACTTTAATGTTAGCTGC
ACACCAATTGCAAATATCAAATAATCTTTCAACTGCCGAATTGATTCAAA
AATTACTTGAATCGCCACAGTCCGCAAATGCTGGCAACAATTTAGAGTCA
ATAATGACGAATCGTAAACTCGACGAATCCTCTATATCTTCTTTAGTGCA
AACGTTTAGAGATTCTATACAGACTGATAATATGAACCATCAGTATTATG
AATGTTCTGTGGATTCGAACAATGAAGCAGAAGTAACATTGTTAGTAGAT
GACGAAAATTCAGTTTCAAATTCCCAGTTCCCTCACACTTCTCAGTCGAT
TAAACAAGAAAAACAAATTCTTATTTTAAAAGGAAATTCAGAGATAGAGT
CTATGTTAGTTAATGGTCGCGTAGTTGGAGAATCGATGAAAGATCAGTTA
TTTTCCAATCAAAATAATACTTTAGATATAAATAGAGAAATCTATAATGG
AGTTTCTAATAATTTTAACCAATCAAATTCAACTGCTAATATATCTGTTG
GAATTAAAAAGGATCTTTCTCAGAGTAAAGTTCAAAAGAGATTGAAAATT
AAACCATCAAAAATCCATGAAACCAGTGCACAATCAGATAGCAGTTCTAA
AGCGTATTCATCGAATTCACCAGTTTTTTCAACCTCACAAGCAGATCACA
GTCCAAATAAAGAATACATAAACGGTGATGGAGAATTTAAAGAAATGAAA
AGAAAATCAAGTCATAACGAAGTCGAAAGGCGTCGTAGAGATCGTATTAA
TACTTGGATCAGTGAATTACAAAATATGTTACCGAATAATGAAAAAATGA
CTCTAAACCGTAGTAAAAGTCACATATTGAAAGCTGTTTATGATTACTTC
AGAGTTCAGACAGATCAGTTTAGTGAAGTACAAGTGAAATGTGAAAAATT
AACATCCGAAAATCGAGAGAAAACTGCCATTATAAAGAAGCTGGAAGCTG
AAAAAGAAGTTCTATTAAGTCAACTTCAATATATTAACCAAGCAGTAACT
AATACTGTTAAATCAACCCAAGAATCATTGAATAGGACTAGCATTAATCA
TTACCGAGTAAATCCTGTCGAAAAGATCAAAGTCAATCAACCTTATAGAA
TTACAAGTGTTTATTCCAATAGTGATGTAATAATTATTCAAATAGTTATA
TTATTGATAATCAAAACAAAAAGAGAAAATTTAGTGAAAATGAAACTATT
AAAAAACTATGAAATATTAAATTAAGTATGTGCATTTAAATGTATTACTG
AATCCCAGTGTACAGACAAAACGCGAAAGTTTCTTAATTTTTTATATTTA
GATTTATAATTAATTACTGTTTTTAAAATGCCATTATAATTGCTGAGTAG
TTATTTTTTTAATTTAATTGTTTTCAAATTCAATGGTGGATTTTCAATAT
CCATTTATTGTTTGATTTATGTGTCAACCAACAGCTTTGGAACAATTCGG
ATGCGGTTTTGATTATTGAATCTTAACTATTATTTTCAAATTTATGCTTT
GAAATAAATATTTTTTATCAATTATCTTGTATTTGACATGTCGTGTGTTA
CTACGTCATTCAATATTGGATTTTAGTGGAAATTATGATTTCAAATAAAG
TGCTTGAATTTTGA
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protein sequence of SMED30029786-orf-1

>SMED30029786-orf-1 ID=SMED30029786-orf-1|Name=SMED30029786-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=623bp
MDDENNSNNNQPMKINSNDLSNDISINLASLLKSLSQNSVSICETPVTSI
SEINLDIENYDQNIHRNKAEGEDFGEIKSESFLNQLANNDRMLNIDYMNG
KRNKSQYNAEINKSLQNVKLISKLTNTKFSSNVNTLNSMQNISAIKSLLD
NQNGQVYLLVKSDAVQAIDSSNNFSNLLQSNNYSQPVQFSSDMGIEMASS
DNCSSLNNSTLMLAAHQLQISNNLSTAELIQKLLESPQSANAGNNLESIM
TNRKLDESSISSLVQTFRDSIQTDNMNHQYYECSVDSNNEAEVTLLVDDE
NSVSNSQFPHTSQSIKQEKQILILKGNSEIESMLVNGRVVGESMKDQLFS
NQNNTLDINREIYNGVSNNFNQSNSTANISVGIKKDLSQSKVQKRLKIKP
SKIHETSAQSDSSSKAYSSNSPVFSTSQADHSPNKEYINGDGEFKEMKRK
SSHNEVERRRRDRINTWISELQNMLPNNEKMTLNRSKSHILKAVYDYFRV
QTDQFSEVQVKCEKLTSENREKTAIIKKLEAEKEVLLSQLQYINQAVTNT
VKSTQESLNRTSINHYRVNPVEKIKVNQPYRITSVYSNSDVIIIQIVILL
IIKTKRENLVKMKLLKNYEILN*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0000103central nervous system
PLANA:0000120progenitor cell
PLANA:0000121stem cell
PLANA:0002142parenchyma
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR001024PLAT/LH2_dom
Vocabulary: molecular function
TermDefinition
GO:0046983protein dimerization activity
GO:0005515protein binding