histone H1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30029763 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 19Note: Hover over icons to view figure legend
Homology
BLAST of histone H1 vs. Ensembl Human
Match: H1-8 (H1.8 linker histone [Source:HGNC Symbol;Acc:HGNC:18463]) HSP 1 Score: 55.8398 bits (133), Expect = 2.077e-8 Identity = 27/76 (35.53%), Postives = 50/76 (65.79%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIR-VGNKGKGASGSFKL 352 HPP + M+ A+++ + R G S+ IK +I Y +++ ++ L++AL+ G+ +G+L R + +K +GA+GSFKL Sbjct: 52 HPPVLRMVLEALQAGEQRRGTSVAAIKLYILHKYPTVDVLRFKYLLKQALATGMRRGLLARPLNSKARGATGSFKL 127
BLAST of histone H1 vs. Ensembl Human
Match: HP1BP3 (heterochromatin protein 1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:24973]) HSP 1 Score: 50.8322 bits (120), Expect = 7.459e-7 Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 2 Query: 137 PAMDMI-KAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSF 346 P MD I AIK+ ++G S++ I+K+I Y ++ +++ G L++AL + +GV+ +V KGKGASGSF Sbjct: 121 PKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQV--KGKGASGSF 190
BLAST of histone H1 vs. Ensembl Human
Match: HP1BP3 (heterochromatin protein 1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:24973]) HSP 1 Score: 50.8322 bits (120), Expect = 1.477e-6 Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 2 Query: 137 PAMDMI-KAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSF 346 P MD I AIK+ ++G S++ I+K+I Y ++ +++ G L++AL + +GV+ +V KGKGASGSF Sbjct: 159 PKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQV--KGKGASGSF 228
BLAST of histone H1 vs. Ensembl Human
Match: HP1BP3 (heterochromatin protein 1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:24973]) HSP 1 Score: 50.8322 bits (120), Expect = 1.477e-6 Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 2 Query: 137 PAMDMI-KAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSF 346 P MD I AIK+ ++G S++ I+K+I Y ++ +++ G L++AL + +GV+ +V KGKGASGSF Sbjct: 159 PKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQV--KGKGASGSF 228
BLAST of histone H1 vs. Ensembl Human
Match: HP1BP3 (heterochromatin protein 1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:24973]) HSP 1 Score: 50.0618 bits (118), Expect = 1.901e-6 Identity = 29/72 (40.28%), Postives = 47/72 (65.28%), Query Frame = 2 Query: 137 PAMDMI-KAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSF 346 P MD I AIK+ ++G S++ I+K+I Y ++ +++ G L++AL + +GV+ +V KGKGASGSF Sbjct: 7 PKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQV--KGKGASGSF 76
BLAST of histone H1 vs. Ensembl Celegans
Match: his-24 (Histone H1.1 [Source:UniProtKB/Swiss-Prot;Acc:P10771]) HSP 1 Score: 60.4622 bits (145), Expect = 7.653e-11 Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNI--NIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLP 355 HPP ++MIK AIK +DR G S I KFI QNY + N+ + LR+AL GV L++ G GA+G F++P Sbjct: 38 HPPYINMIKEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAA--GSGANGRFRVP 112
BLAST of histone H1 vs. Ensembl Celegans
Match: hil-2 (Histone H1.2 [Source:UniProtKB/Swiss-Prot;Acc:P15796]) HSP 1 Score: 56.9954 bits (136), Expect = 1.270e-9 Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNI--NIDKYGPFLRRALSHGVEKGVLIR-VGNKGKGASGSFKLPSKKDAS 373 HPP ++M+ AAI S ++R G S I I K+I NY + + K LR AL+ GV L++ VGN GASG F++ K A+ Sbjct: 38 HPPFINMVTAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGN---GASGRFRVAEKAAAT 118
BLAST of histone H1 vs. Ensembl Celegans
Match: hil-6 (Putative histone H1.6 [Source:UniProtKB/Swiss-Prot;Acc:O16277]) HSP 1 Score: 55.0694 bits (131), Expect = 5.256e-9 Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNI--NIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKDAS 373 HPP ++M+ AAI S ++R G S I I K+I NY + + K LR AL GV L++ G GA+G F++ K A+ Sbjct: 35 HPPFINMVTAAISSLKERKGSSKIAILKYITANYKLGDQVKKINSNLRSALKKGVASKALVQ--TVGTGATGRFRVAEKTAAT 115
BLAST of histone H1 vs. Ensembl Celegans
Match: hil-1 (Histone H1.X [Source:UniProtKB/Swiss-Prot;Acc:Q18336]) HSP 1 Score: 54.6842 bits (130), Expect = 1.039e-8 Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 2 Query: 128 NHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNI--NIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 +HP MDMIK AI++ + TG S I K+I QNY++ N+ K LR L V+ G + + +G GA+GSF++ Sbjct: 36 HHPSYMDMIKGAIQAIDNGTGSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDIEQT--RGHGATGSFRM 110
BLAST of histone H1 vs. Ensembl Celegans
Match: hil-3 (Histone H1.3 [Source:UniProtKB/Swiss-Prot;Acc:Q19743]) HSP 1 Score: 53.9138 bits (128), Expect = 1.450e-8 Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNI--NIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 HPP ++M+ AAI ++R G S I I K+I +NYN+ I K LR L+ GV L++ + G GASG F++ Sbjct: 38 HPPYINMVTAAINGLKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVVSKALVQ--SVGTGASGRFRV 111
BLAST of histone H1 vs. Ensembl Fly
Match: His1:CG33807 (gene:FBgn0053807 transcript:FBtr0091811) HSP 1 Score: 78.9518 bits (193), Expect = 5.627e-17 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 2 Query: 122 TPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 TP+HPP M+ A+IK+ ++R G SL+ IKK+I Y + K PF+++ L V G LI+ KGKGASGSFKL Sbjct: 43 TPSHPPTQQMVDASIKNLEERGGSSLLAIKKYITATYKCDAQKLAPFIKKYLKSAVVNGKLIQ--TKGKGASGSFKL 117
BLAST of histone H1 vs. Ensembl Fly
Match: His1:CG33804 (gene:FBgn0053804 transcript:FBtr0091808) HSP 1 Score: 78.1814 bits (191), Expect = 9.760e-17 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 2 Query: 122 TPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 TP+HPP M+ A+IK+ ++R G SL+ IKK+I Y + K PF+++ L V G LI+ KGKGASGSFKL Sbjct: 43 TPSHPPTQQMVDASIKNLKERGGSSLLAIKKYITATYKCDAQKLAPFIKKYLKSAVVNGKLIQ--TKGKGASGSFKL 117
BLAST of histone H1 vs. Ensembl Fly
Match: His1:CG31617 (gene:FBgn0051617 transcript:FBtr0085892) HSP 1 Score: 78.1814 bits (191), Expect = 9.760e-17 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 2 Query: 122 TPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 TP+HPP M+ A+IK+ ++R G SL+ IKK+I Y + K PF+++ L V G LI+ KGKGASGSFKL Sbjct: 43 TPSHPPTQQMVDASIKNLKERGGSSLLAIKKYITATYKCDAQKLAPFIKKYLKSAVVNGKLIQ--TKGKGASGSFKL 117
BLAST of histone H1 vs. Ensembl Fly
Match: His1:CG33846 (gene:FBgn0053846 transcript:FBtr0091850) HSP 1 Score: 78.1814 bits (191), Expect = 9.760e-17 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 2 Query: 122 TPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 TP+HPP M+ A+IK+ ++R G SL+ IKK+I Y + K PF+++ L V G LI+ KGKGASGSFKL Sbjct: 43 TPSHPPTQQMVDASIKNLKERGGSSLLAIKKYITATYKCDAQKLAPFIKKYLKSAVVNGKLIQ--TKGKGASGSFKL 117
BLAST of histone H1 vs. Ensembl Fly
Match: His1:CG33843 (gene:FBgn0053843 transcript:FBtr0091847) HSP 1 Score: 78.1814 bits (191), Expect = 9.760e-17 Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 2 Query: 122 TPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 TP+HPP M+ A+IK+ ++R G SL+ IKK+I Y + K PF+++ L V G LI+ KGKGASGSFKL Sbjct: 43 TPSHPPTQQMVDASIKNLKERGGSSLLAIKKYITATYKCDAQKLAPFIKKYLKSAVVNGKLIQ--TKGKGASGSFKL 117
BLAST of histone H1 vs. Ensembl Zebrafish
Match: h1m (linker histone H1M [Source:ZFIN;Acc:ZDB-GENE-030131-5614]) HSP 1 Score: 55.4546 bits (132), Expect = 1.381e-8 Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINID----KYGPFLRRALSHGVEKGVLIRVGNKGK--GASGSFKL 352 HP M+M+K A+K R G+S I+ +I++ Y +D KY +RRAL+ G++ GV +R N G GA G F++ Sbjct: 45 HPSTMEMVKEALKELDSRKGVSAQAIRGYIKEKY-TTVDETRLKY--MVRRALNKGMDTGVFVRPANSGSTTGAQGRFRI 121
BLAST of histone H1 vs. Ensembl Xenopus
Match: h1-8 (H1.8 linker histone [Source:NCBI gene;Acc:549145]) HSP 1 Score: 51.6026 bits (122), Expect = 3.848e-7 Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 2 Query: 122 TPNHPPAMDMIKAAIKSSQDRTGMSLILIK-KFIQQNYNINIDKYGPFLRRALSHGVEKGVLIR-VGNKGKGASGSFKL 352 T +HPP + M+ A+K + +R G S+ I+ + + + ++ + LR AL+ G+EKG+LIR + + GA+G FKL Sbjct: 35 TQSHPPTLAMVVEALKKNTERKGTSVQAIRTRILAAHPTVDPLRLKFLLRTALNKGLEKGILIRPLNSSATGATGRFKL 113
BLAST of histone H1 vs. Ensembl Xenopus
Match: h1-8 (H1.8 linker histone [Source:NCBI gene;Acc:549145]) HSP 1 Score: 51.6026 bits (122), Expect = 5.185e-7 Identity = 28/79 (35.44%), Postives = 48/79 (60.76%), Query Frame = 2 Query: 122 TPNHPPAMDMIKAAIKSSQDRTGMSLILIK-KFIQQNYNINIDKYGPFLRRALSHGVEKGVLIR-VGNKGKGASGSFKL 352 T +HPP + M+ A+K + +R G S+ I+ + + + ++ + LR AL+ G+EKG+LIR + + GA+G FKL Sbjct: 90 TQSHPPTLAMVVEALKKNTERKGTSVQAIRTRILAAHPTVDPLRLKFLLRTALNKGLEKGILIRPLNSSATGATGRFKL 168
BLAST of histone H1 vs. Ensembl Mouse
Match: H1f8 (H1.8 linker histone [Source:MGI Symbol;Acc:MGI:2176207]) HSP 1 Score: 56.9954 bits (136), Expect = 5.725e-9 Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVG-NKGKGASGSFKL 352 +P + M+ A+K+ + R G S++ IK +IQ Y ++ ++ L++AL GV +G+L R +K KGA+GSFKL Sbjct: 46 NPTMLHMVLEALKAREARQGTSVVAIKVYIQHKYPTVDTTRFKYLLKQALETGVRRGLLTRPAHSKAKGATGSFKL 121
BLAST of histone H1 vs. Ensembl Mouse
Match: H1f8 (H1.8 linker histone [Source:MGI Symbol;Acc:MGI:2176207]) HSP 1 Score: 56.225 bits (134), Expect = 6.565e-9 Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVG-NKGKGASGSFKL 352 +P + M+ A+K+ + R G S++ IK +IQ Y ++ ++ L++AL GV +G+L R +K KGA+GSFKL Sbjct: 46 NPTMLHMVLEALKAREARQGTSVVAIKVYIQHKYPTVDTTRFKYLLKQALETGVRRGLLTRPAHSKAKGATGSFKL 121
BLAST of histone H1 vs. Ensembl Mouse
Match: H1f8 (H1.8 linker histone [Source:MGI Symbol;Acc:MGI:2176207]) HSP 1 Score: 56.225 bits (134), Expect = 7.328e-9 Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVG-NKGKGASGSFKL 352 +P + M+ A+K+ + R G S++ IK +IQ Y ++ ++ L++AL GV +G+L R +K KGA+GSFKL Sbjct: 46 NPTMLHMVLEALKAREARQGTSVVAIKVYIQHKYPTVDTTRFKYLLKQALETGVRRGLLTRPAHSKAKGATGSFKL 121
BLAST of histone H1 vs. Ensembl Mouse
Match: Hp1bp3 (heterochromatin protein 1, binding protein 3 [Source:MGI Symbol;Acc:MGI:109369]) HSP 1 Score: 53.5286 bits (127), Expect = 3.615e-8 Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2 Query: 137 PAMDMI-KAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSF 346 P MD I AIK+S +TG S++ I+K+I Y ++ +++ G L++AL + +GV+ +V KGKGASGSF Sbjct: 123 PKMDAILTEAIKASFQKTGASVVAIRKYIIHKYPSLGLERRGYLLKQALKRELNRGVIRQV--KGKGASGSF 192
BLAST of histone H1 vs. Ensembl Mouse
Match: Hp1bp3 (heterochromatin protein 1, binding protein 3 [Source:MGI Symbol;Acc:MGI:109369]) HSP 1 Score: 53.1434 bits (126), Expect = 1.442e-7 Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 2 Query: 137 PAMDMI-KAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSF 346 P MD I AIK+S +TG S++ I+K+I Y ++ +++ G L++AL + +GV+ +V KGKGASGSF Sbjct: 123 PKMDAILTEAIKASFQKTGASVVAIRKYIIHKYPSLGLERRGYLLKQALKRELNRGVIRQV--KGKGASGSF 192
BLAST of histone H1 vs. UniProt/SwissProt
Match: sp|P07796|H1G_STRPU (Histone H1-gamma, late OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 8.984e-19 Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 125 PNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKD 367 P HPP+ M+ AA+ + ++R G S IKK+I NY +++ K GPF+RRAL GV G L++ KGKGASGSFKL KK+ Sbjct: 16 PAHPPSSQMVVAAVTALKERGGSSTQAIKKYIAANYTVDMTKQGPFIRRALVKGVASGALVQ--TKGKGASGSFKLGKKKE 94
BLAST of histone H1 vs. UniProt/SwissProt
Match: sp|P15869|H1B_STRPU (Histone H1-beta, late embryonic OS=Strongylocentrotus purpuratus OX=7668 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.078e-17 Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 2 Query: 125 PNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKD 367 P HP + +M+ AAI + ++R G S I+K+I++NY ++I K F++RAL GVEKG L++V KGKGASGSFKL KK+ Sbjct: 16 PAHPSSSEMVLAAITALKERGGSSAQAIRKYIEKNYTVDIKKQAIFIKRALITGVEKGTLVQV--KGKGASGSFKLGKKKE 94
BLAST of histone H1 vs. UniProt/SwissProt
Match: sp|P19375|H1E_STRPU (Histone H1, early embryonic OS=Strongylocentrotus purpuratus OX=7668 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.283e-17 Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 HPPA +M+ AI +DR G SL IKK+I N+++ +D+ F++RAL GVEKG L++ KGKGASGSFK+ Sbjct: 18 HPPAAEMVATAITELKDRNGSSLQAIKKYIATNFDVQMDRQLLFIKRALKSGVEKGKLVQT--KGKGASGSFKV 89
BLAST of histone H1 vs. UniProt/SwissProt
Match: sp|P21895|H1_CHITH (Histone H1 OS=Chironomus thummi thummi OX=7155 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-16 Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 2 Query: 128 NHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPS 358 HPP DMI AIK+ ++R G S+ IKKF+ Y ++ DK PF+++ L VEKG L++ KGKGASGSFKLP+ Sbjct: 38 THPPVSDMIVNAIKTLKERGGSSVQAIKKFLVAQYKVDTDKLSPFIKKYLKSAVEKGQLLQ--TKGKGASGSFKLPA 112
BLAST of histone H1 vs. UniProt/SwissProt
Match: sp|P40278|H1E_CHITE (Histone H1E OS=Chironomus tentans OX=7153 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.558e-16 Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 2 Query: 125 PNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLP 355 P HPP +M+ AI + ++R G SLI IKKF+ Y ++++K PF+++ L V KG L++ KGKGASGSFKLP Sbjct: 49 PTHPPVSEMVVNAITTLKERGGSSLIAIKKFVAAQYKVDVEKLVPFIKKFLKASVAKGTLLQA--KGKGASGSFKLP 123
BLAST of histone H1 vs. TrEMBL
Match: S5VL05 (Histone H1 (Fragment) OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 1.992e-63 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 2 Query: 122 TPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKDASKTDSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQAEKRKSITPKKVVKVDAHKS 634 TPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKDASKTDSLEKVSKKPAPKKLIKKPMKKTEKKVVAKKPIKKVEKKAEEKKDEKVDKVDDKKVVKKSPVKRQAEKRKSITPKKVVKVDAHKS Sbjct: 23 TPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKDASKTDSLEKVSKKPAPKKLIKKPMKKTEKKVVAKKPIKKVEKKAEEKKDEKVDKVDDKKVVKKSPVKRQAEKRKSITPKKVVKVDAHKS 193
BLAST of histone H1 vs. TrEMBL
Match: A0A4S2L4U2 (H15 domain-containing protein OS=Opisthorchis felineus OX=147828 GN=CRM22_009888 PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.102e-26 Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 2 Query: 128 NHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKK 364 NHPP +DM+KA+I +++DR G SL IKKFI NY ++++K GP +RR + H VEKG+L+RVGNKGKGASGSFK+ KK Sbjct: 24 NHPPVIDMVKASINAAKDRKGTSLPTIKKFIAANYKVDVEKLGPHIRRGIVHAVEKGILVRVGNKGKGASGSFKVAEKK 102
BLAST of histone H1 vs. TrEMBL
Match: A0A1S8WTV8 (Linker histone H1 and H5 family protein OS=Opisthorchis viverrini OX=6198 GN=X801_06323 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 6.469e-26 Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 2 Query: 128 NHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKK 364 NHPP +DM+KA+I +++DR G SL IKKFI NY ++++K GP +RR + H VEKG+L+RVGNKGKGASGSFK+ KK Sbjct: 24 NHPPVIDMVKASINAAKDRKGTSLPTIKKFIAANYKVDVEKLGPHIRRGIVHAVEKGILVRVGNKGKGASGSFKVAEKK 102
BLAST of histone H1 vs. TrEMBL
Match: A0A504YH67 (Histone deacetylase OS=Fasciola gigantica OX=46835 GN=FGIG_05707 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.794e-25 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 2 Query: 128 NHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSK 361 HPP +DM+KAAI +++DR G SL IKKFI NY ++++K GP +RR + H VEKGVL+RVGNKGKGASGSFKL K Sbjct: 22 THPPVIDMVKAAITAAKDRKGTSLPSIKKFIAANYKVDVEKLGPHIRRGIVHAVEKGVLVRVGNKGKGASGSFKLGEK 99
BLAST of histone H1 vs. TrEMBL
Match: A0A2H1BWU2 (Histone deacetylase OS=Fasciola hepatica OX=6192 GN=D915_009817 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 2.794e-25 Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 2 Query: 128 NHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSK 361 HPP +DM+KAAI +++DR G SL IKKFI NY ++++K GP +RR + H VEKGVL+RVGNKGKGASGSFKL K Sbjct: 22 THPPVIDMVKAAITAAKDRKGTSLPSIKKFIAANYKVDVEKLGPHIRRGIVHAVEKGVLVRVGNKGKGASGSFKLGEK 99
BLAST of histone H1 vs. Ensembl Cavefish
Match: ENSAMXT00000009754.2 (protein B4 [Source:NCBI gene;Acc:103022710]) HSP 1 Score: 52.7582 bits (125), Expect = 9.919e-8 Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 2 Query: 125 PNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNY-NINIDKYGPFLRRALSHGVEKGVLIRVG-NKGKGASGSFKL 352 P HP MDM+K A+ R G+S I+ FI++ + ++ + +R+AL+ G+E G L+R + GA G F+L Sbjct: 45 PTHPSTMDMLKEALMELDSRKGVSAQAIRTFIKEKHPTVDETRLKLMVRKALAKGLESGALVRPAKSTSTGAQGRFRL 122
BLAST of histone H1 vs. Ensembl Cavefish
Match: h1-0 (histone H1.0-B [Source:NCBI gene;Acc:103026561]) HSP 1 Score: 46.9802 bits (110), Expect = 5.768e-6 Identity = 31/75 (41.33%), Postives = 42/75 (56.00%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLP 355 HP DMIKAAI + + R G S I+K+++ +Y + D ++ AL V G+L KG GASGSFKL Sbjct: 24 HPKYSDMIKAAIVADKSRGGASRQSIQKYVKSHYKVG-DNADSQIKLALKRLVASGLLRH--TKGIGASGSFKLA 95
BLAST of histone H1 vs. Ensembl Nematostella
Match: EDO35464 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SLB2]) HSP 1 Score: 55.0694 bits (131), Expect = 2.947e-10 Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 2 Query: 128 NHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 HP +MI AAI S +DR G S I+K+I+ NY + + G L+ AL V G +++ KG GASGSFKL Sbjct: 5 EHPKYSEMIAAAISSLKDRNGSSRQAIEKYIKANYKVG-ESVGVHLKMALKRAVAGGSILQ--TKGVGASGSFKL 76
BLAST of histone H1 vs. Ensembl Nematostella
Match: EDO48286 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RJM2]) HSP 1 Score: 52.373 bits (124), Expect = 1.783e-8 Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 HP DM+ AAI + ++R G S I+K+I+ NY + D G L+ AL +KG L+ KG GASGSFKL Sbjct: 19 HPKYSDMVVAAIGALKERNGSSRQAIEKYIKGNYKVG-DGVGVHLKLALKRMSDKGKLVH--TKGVGASGSFKL 89
BLAST of histone H1 vs. Ensembl Nematostella
Match: EDO37223 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SGC7]) HSP 1 Score: 49.2914 bits (116), Expect = 4.705e-8 Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL 352 HP M++ AIK +R G S I K++Q N+++ D ++ +L GV+ G L+R G+GASGSFKL Sbjct: 1 HPKYNFMVEEAIKRLHERGGSSRQKIVKYVQANFDVG-DNSEKLVKASLKKGVDSGRLVRT--SGQGASGSFKL 71
BLAST of histone H1 vs. Ensembl Nematostella
Match: EDO36730 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHX6]) HSP 1 Score: 46.9802 bits (110), Expect = 2.258e-7 Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 2 Query: 128 NHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGA 334 HP +M+ AAI + ++R G S I+K+I+ NY + DK G L+ AL EKG L+ KG GA Sbjct: 7 EHPKYTEMVAAAIGALKERGGSSRQAIEKYIKANYKVG-DKVGAQLKMALKRMSEKGALVH--TKGTGA 72
BLAST of histone H1 vs. Ensembl Nematostella
Match: EDO27655 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SHX9]) HSP 1 Score: 46.595 bits (109), Expect = 2.372e-7 Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 2 Query: 128 NHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGA 334 HP +M+ AAI + ++R G S I+K+I+ NY + DK G L+ AL EKG L+ KG GA Sbjct: 7 EHPKYTEMVAAAIGALKERGGSSRQAIEKYIKANYKVG-DKVGTQLKMALKRMSEKGALVH--TKGTGA 72
BLAST of histone H1 vs. Ensembl Medaka
Match: h1-0 (histone H1.0-B [Source:NCBI gene;Acc:101162715]) HSP 1 Score: 48.9062 bits (115), Expect = 1.190e-6 Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 2 Query: 131 HPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKD 367 HP DMIKAAI R+G S I+K++++NY + D ++ AL V G+L KG GASGSF+L +D Sbjct: 23 HPKYSDMIKAAIVHDASRSGASRQSIQKYVRKNYKVG-DNADVQIKMALKRLVASGMLRH--TKGIGASGSFRLTKPED 98
BLAST of histone H1 vs. Planmine SMEST
Match: SMESG000024348.1 (SMESG000024348.1) HSP 1 Score: 209.534 bits (532), Expect = 1.784e-67 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 2 Query: 47 MSDIXXXXXXXXXXXXXXXXXXXXXTPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKDASKTDSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQAEKRKSITPKKVVKVDAHKS 634 MSDIKPKADVKPKSDAKSKPAKAKSTPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKDASKTDSLEKVSKKPAPKKLIKKPMKKTEKKVVAKKPIKKVEKKAEEKKDEKVDKVDDKKVVKKSPVKRQAEKRKSITPKKVVKVDAHKS Sbjct: 1 MSDIKPKADVKPKSDAKSKPAKAKSTPNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKDASKTDSLEKVSKKPAPKKLIKKPMKKTEKKVVAKKPIKKVEKKAEEKKDEKVDKVDDKKVVKKSPVKRQAEKRKSITPKKVVKVDAHKS 196
BLAST of histone H1 vs. Planmine SMEST
Match: SMESG000018415.1 (SMESG000018415.1) HSP 1 Score: 103.99 bits (258), Expect = 9.050e-27 Identity = 47/88 (53.41%), Postives = 69/88 (78.41%), Query Frame = 2 Query: 125 PNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKLPSKKDASKTDSL 388 P+HPPA+DM+K+AI +++ R G+SL LIKK++ + I+I+KYGPFLRR++ GVEKG+L+R+GN KG+SGSFKL SK +++ Sbjct: 19 PSHPPAIDMVKSAILAAKSRKGLSLSLIKKYLIDTHKIDIEKYGPFLRRSIVAGVEKGILVRMGN-SKGSSGSFKLAPADKVSKKETI 105
BLAST of histone H1 vs. Planmine SMEST
Match: SMESG000018375.1 (SMESG000018375.1) HSP 1 Score: 105.916 bits (263), Expect = 1.811e-25 Identity = 51/86 (59.30%), Postives = 69/86 (80.23%), Query Frame = 2 Query: 125 PNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL-PSKKDASKT 379 P+HPPA+DM+KAAI++++ R G+SL +IKK++ + + I+I KYGPFLRRA++ VEKG+LIR GN KGASGSFKL P K +SK Sbjct: 15 PSHPPAIDMVKAAIEAAKSRKGLSLSMIKKYLSETHKIDIAKYGPFLRRAITAAVEKGILIRTGN-AKGASGSFKLAPILKSSSKV 99
BLAST of histone H1 vs. Planmine SMEST
Match: SMESG000018375.1 (SMESG000018375.1) HSP 1 Score: 105.531 bits (262), Expect = 2.083e-25 Identity = 51/86 (59.30%), Postives = 69/86 (80.23%), Query Frame = 2 Query: 125 PNHPPAMDMIKAAIKSSQDRTGMSLILIKKFIQQNYNINIDKYGPFLRRALSHGVEKGVLIRVGNKGKGASGSFKL-PSKKDASKT 379 P+HPPA+DM+KAAI++++ R G+SL +IKK++ + + I+I KYGPFLRRA++ VEKG+LIR GN KGASGSFKL P K +SK Sbjct: 15 PSHPPAIDMVKAAIEAAKSRKGLSLSMIKKYLSETHKIDIAKYGPFLRRAITAAVEKGILIRTGN-AKGASGSFKLAPILKSSSKV 99 The following BLAST results are available for this feature:
BLAST of histone H1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of histone H1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of histone H1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of histone H1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 1
BLAST of histone H1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of histone H1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of histone H1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of histone H1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of histone H1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of histone H1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of histone H1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of histone H1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 5
BLAST of histone H1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 1
BLAST of histone H1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30029763 ID=SMED30029763|Name=histone H1|organism=Schmidtea mediterranea sexual|type=transcript|length=827bpback to top protein sequence of SMED30029763-orf-1 >SMED30029763-orf-1 ID=SMED30029763-orf-1|Name=SMED30029763-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=224bp MSDIKPKADVKPKSDAKSKPAKAKSTPNHPPAMDMIKAAIKSSQDRTGMSback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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