SMED30029710

Overview
NameSMED30029710
Smed IDSMED30029710
Length (bp)3440
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30029710 (SMED30029710) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30029710 (SMED30029710) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30029710 (SMED30029710) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30029710 (SMED30029710) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30029710

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30029710SMESG000054977.1 SmedASXL_016950SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30029710SMESG000054977.1 SmedASXL_016950SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30029710SMESG000054977.1 dd_Smed_v4_7093_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029710SMESG000054977.1 Contig50075newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029710SMESG000054977.1 Contig50075uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30029710 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.005926:9524..12943 -16689
Homology
[Close]
BLAST of SMED30029710 vs. Planmine SMEST
Match: SMESG000054977.1 (SMESG000054977.1)

HSP 1 Score: 1957.18 bits (5069), Expect = 0.000e+0
Identity = 1018/1023 (99.51%), Postives = 1018/1023 (99.51%), Query Frame = 3 
Query:   24 MHDYEXXXXXXXXXXXXXXXELRQLAIVSMVKHEKKDPFVDNDTRQCCSEPIDCHSFIPKRNKRLSTELLNENLKKIKVEVDESISGESIDDNTLLNVFKIESILSFNNCDKTRNXXXXXXXXXXXXXXXXXXQRFNQINEHSPTSEYLANEICYGTALSDSDEDDFDIYTSAVLLPEVITDPDILACHKSISEVKSTIDNLEKSIKLMTSSIQKNLMKSKKISTQIENLKNQKVELHKEIIVNRRKMLVLNKIKKQKSIELIKYEQKKRNLSLKRVSAAQNGDLFNSSSPVLYQSSPYDIDCNHVICSAWINNTCNNKLCSYQHPKFSSKLIKTSVKSVKIKENDKVFLKEMNPTGFICKLSCDACRTNIPISSIHLNDDRFCKSCCQKLVSLMKPTEXXXXXXXXWHHIYKRYVMSIGLPIENRDPTILQNLYKCSEAMKIKLLTAAADIPLDLFNSAGCHVILSLNQQQQQSRIDDLLGFIKDLDFSPTLIRFACTLPFPVPKLYQLMIDSIGFHIDKSSRREDFHLLIDQFTEMSKSLGLSAIDRLFDWLELCIESRKTDNYCWKIPVFSCAVLEEIIGPHFMPKLSLSSNDIRLGDKYWIERKDEIFRLAKLYSSSEALSPTNPIDIPYSTWMMEPTIHLLLIKYMIITYFFTGNEDGALQICERYTTRNYFFEILLSELSLIYNSPILSIISIDGQRFDRTASLIEHTYNKSDWLLNNRSINSCIRLLESVPQILYRANHKSIPTTTANESLKFYEHFLGFGSIFDDQFMDFIPKLTENEMKSIRNNCSAIWLCYISLLALVTDHPIDFKTVLRSNRLMPMPSNHLNRVVQFIAIQLGKRSTGDGLDYYTDFRSVVLLAKDSMEFENFIDLVQSINVDKMLGCQLDLWLFLIDFCTIKFPRHNFDQFLVMVSLKLLDSCRIHLNSYHDHDHPSRVLNHIVMCYPVRRVEVWLNFIRLLLRTGNTPVYELIDACEMALSQFPNCKLLWQHYYSSTIKSGDQELPKRIKSNVTKFGFEL 3092
            MHDYEDVIVIDSDSDNDDIDELRQLAIVSMVKHEKKDPFVDNDT QCCSEPIDCHSFIPKRNKRLSTELLNENLKKIKVEVDESISGESIDDNTLLNVFKIESILSFNNCDKTRNLLKEEELKNKLLKILSEKQRFNQINEHSPTSEYLANEICYGTALSDSDEDDFDIYTSAVLLPEVITDPDILACHKSISEVKSTIDNLEKSIKLMTSSIQKNLMKSKKISTQIENLKNQKVELHKEIIVNRRKML LNKIKKQKSIELIKYEQKKRNLSLKRVSAAQNGDLFNSSSPV YQSSPYDIDCNHVICSAWINNTCNNKLCSYQHPKFSSKLIKTSVKSVKIKENDKVFLKEMNPTGFICKLSCDACRTNIPISSIHLNDDRFCKSCCQKLVSLMKPTEILQQLILIWHHIYKRYVMSIGLPIENRDPTILQNLYKCSEAMKIKLLTAAADIPLDLFNSAGCHVILSLNQQQQQSRIDDLLGFIKDLDFSPTLIRFACTLPFPVPKLYQLMIDSIGFHIDKSSRREDFHLLIDQFTEMSKSLGLSAIDRLFDWLELCIESRKTDNYCWKIPVFSCAVLEEIIGPHFMPKLSLSSNDIRLGDKYWIERKDEIFRLAKLYSSSEALSPTNPIDIPY TWMMEPTIHLLLIKYMIITYFFTGNEDGALQICERYTTRNYFFEILLSELSLIYNSPILSIISIDGQRFDRTASLIEHTYNKSDWLLNNRSINSCIRLLESVPQILYRANHKSIPTTTANESLKFYEHFLGFGSIFDDQFMDFIPKLTENEMKSIRNNCSAIWLCYISLLALVTDHPIDFKTVLRSNRLMPMPSNHLNRVVQFIAIQLGKRSTGDGLDYYTDFRSVVLLAKDSMEFENFIDLVQSINVDKMLGCQLDLWLFLIDFCTIKFPRHNFDQFLVMVS KLLDSCRIHLNSYHDHDHPSRVLNHIVMCYPVRRVEVWLNFIRLLLRTGNTPVYELIDACEMALSQFPNCKLLWQHYYSSTIKSGDQELPKRIKSNVTKFGFEL
Sbjct:    1 MHDYEDVIVIDSDSDNDDIDELRQLAIVSMVKHEKKDPFVDNDTSQCCSEPIDCHSFIPKRNKRLSTELLNENLKKIKVEVDESISGESIDDNTLLNVFKIESILSFNNCDKTRNLLKEEELKNKLLKILSEKQRFNQINEHSPTSEYLANEICYGTALSDSDEDDFDIYTSAVLLPEVITDPDILACHKSISEVKSTIDNLEKSIKLMTSSIQKNLMKSKKISTQIENLKNQKVELHKEIIVNRRKMLDLNKIKKQKSIELIKYEQKKRNLSLKRVSAAQNGDLFNSSSPVSYQSSPYDIDCNHVICSAWINNTCNNKLCSYQHPKFSSKLIKTSVKSVKIKENDKVFLKEMNPTGFICKLSCDACRTNIPISSIHLNDDRFCKSCCQKLVSLMKPTEILQQLILIWHHIYKRYVMSIGLPIENRDPTILQNLYKCSEAMKIKLLTAAADIPLDLFNSAGCHVILSLNQQQQQSRIDDLLGFIKDLDFSPTLIRFACTLPFPVPKLYQLMIDSIGFHIDKSSRREDFHLLIDQFTEMSKSLGLSAIDRLFDWLELCIESRKTDNYCWKIPVFSCAVLEEIIGPHFMPKLSLSSNDIRLGDKYWIERKDEIFRLAKLYSSSEALSPTNPIDIPYCTWMMEPTIHLLLIKYMIITYFFTGNEDGALQICERYTTRNYFFEILLSELSLIYNSPILSIISIDGQRFDRTASLIEHTYNKSDWLLNNRSINSCIRLLESVPQILYRANHKSIPTTTANESLKFYEHFLGFGSIFDDQFMDFIPKLTENEMKSIRNNCSAIWLCYISLLALVTDHPIDFKTVLRSNRLMPMPSNHLNRVVQFIAIQLGKRSTGDGLDYYTDFRSVVLLAKDSMEFENFIDLVQSINVDKMLGCQLDLWLFLIDFCTIKFPRHNFDQFLVMVSRKLLDSCRIHLNSYHDHDHPSRVLNHIVMCYPVRRVEVWLNFIRLLLRTGNTPVYELIDACEMALSQFPNCKLLWQHYYSSTIKSGDQELPKRIKSNVTKFGFEL 1023
The following BLAST results are available for this feature:
BLAST of SMED30029710 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30029710 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000054977.10.000e+099.51SMESG000054977.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029710 ID=SMED30029710|Name=SMED30029710|organism=Schmidtea mediterranea sexual|type=transcript|length=3440bp
CTATATAAATCTTATATGACAGAATGCATGATTATGAAGATGTAATTGTT
ATAGACAGTGATAGTGATAATGATGATATAGATGAATTAAGACAGCTAGC
TATTGTATCCATGGTAAAACATGAGAAAAAAGACCCCTTTGTAGATAATG
ACACGCGTCAATGCTGTTCTGAACCTATAGATTGCCATTCATTTATACCT
AAAAGAAATAAAAGATTATCCACTGAACTATTAAATGAAAATTTGAAAAA
AATAAAAGTTGAAGTAGATGAATCTATCAGTGGAGAAAGTATTGATGATA
ATACGTTATTAAATGTATTTAAAATCGAAAGTATTCTTAGTTTCAATAAC
TGTGATAAAACACGTAATTTGCTAAAAGAAGAAGAATTAAAAAATAAACT
TCTCAAAATTTTAAGCGAAAAACAGCGATTTAACCAAATAAACGAACATT
CACCGACCTCGGAATATCTAGCTAACGAAATTTGTTATGGAACAGCTTTA
TCCGACAGTGATGAAGATGATTTTGATATTTATACAAGTGCAGTGTTATT
GCCAGAAGTAATTACAGATCCTGATATTTTAGCATGCCACAAATCGATCT
CAGAAGTCAAAAGCACAATTGATAATTTAGAAAAATCTATTAAGTTAATG
ACATCGTCAATTCAAAAAAATTTGATGAAATCCAAGAAAATTTCAACACA
AATTGAAAATTTAAAAAACCAAAAAGTTGAGCTTCATAAAGAAATAATTG
TTAATCGACGTAAAATGCTGGTTTTAAATAAAATCAAGAAACAGAAATCG
ATAGAATTAATTAAATATGAACAAAAGAAAAGGAATTTATCGTTAAAACG
AGTTTCTGCTGCTCAGAATGGAGATTTATTTAATTCGTCATCTCCAGTTT
TGTATCAATCGAGTCCATATGATATTGATTGCAATCATGTGATTTGCTCT
GCTTGGATAAATAATACATGCAACAACAAGCTTTGCAGTTATCAGCATCC
GAAATTTTCATCCAAACTCATTAAAACATCAGTTAAGTCAGTCAAAATCA
AAGAAAACGACAAAGTATTTCTCAAAGAAATGAACCCGACTGGATTTATT
TGCAAATTATCTTGTGATGCTTGTCGGACAAATATACCAATATCCAGCAT
ACATCTGAATGACGATCGGTTCTGCAAGTCCTGCTGCCAGAAACTCGTTT
CGCTAATGAAACCGACAGAAATTCTCCAACAACTCATTCTCATCTGGCAT
CACATTTACAAGCGGTACGTCATGTCGATCGGGCTTCCTATTGAAAATCG
CGACCCAACAATCTTACAAAATCTCTACAAATGCTCCGAAGCGATGAAAA
TCAAACTATTAACCGCAGCAGCCGATATTCCGTTGGATCTATTCAATTCT
GCCGGCTGTCACGTGATCCTGAGCCTGAATCAGCAGCAGCAGCAATCCCG
GATTGATGATCTGTTGGGTTTCATCAAGGATCTCGATTTCTCCCCGACTC
TCATCCGATTCGCTTGCACCTTGCCGTTCCCGGTTCCAAAACTCTATCAA
CTAATGATCGATTCAATTGGATTCCACATTGACAAATCGAGTCGGCGCGA
AGATTTTCATTTGTTGATCGATCAATTTACCGAAATGTCAAAAAGTCTCG
GACTGTCGGCAATCGATCGATTATTCGATTGGTTGGAATTGTGCATTGAA
TCGAGGAAAACCGATAATTACTGTTGGAAAATTCCCGTTTTCTCTTGCGC
GGTTCTCGAGGAAATTATCGGACCACATTTCATGCCGAAACTCAGTTTGT
CTTCGAATGACATTCGACTCGGTGATAAATATTGGATCGAGCGCAAGGAT
GAAATTTTCCGATTGGCTAAGCTCTACTCGTCATCGGAAGCGCTGTCACC
GACAAATCCCATCGACATTCCCTACAGCACGTGGATGATGGAGCCCACCA
TACATTTGCTGCTGATAAAATACATGATTATCACCTACTTTTTCACCGGG
AACGAAGATGGTGCCTTGCAGATCTGTGAGCGATACACGACGAGGAATTA
TTTCTTTGAGATTTTACTATCGGAATTGAGTCTGATCTACAACAGTCCGA
TATTATCGATAATATCAATCGATGGGCAGCGCTTCGACAGGACGGCCAGC
TTGATTGAGCACACCTACAACAAATCTGATTGGCTGTTGAATAATCGATC
AATAAACTCTTGCATCAGACTGCTGGAATCGGTTCCGCAAATACTCTATC
GAGCCAATCATAAATCGATTCCAACAACAACAGCAAATGAGTCTTTGAAA
TTTTATGAGCATTTCCTCGGATTTGGATCGATTTTCGATGATCAATTTAT
GGATTTTATTCCCAAACTCACTGAGAATGAAATGAAATCAATTAGGAACA
ATTGTTCAGCGATTTGGCTCTGTTACATTAGTCTGTTGGCATTGGTAACC
GATCATCCAATCGATTTCAAAACCGTTCTGAGATCCAATCGATTAATGCC
GATGCCGTCGAATCATTTGAATCGTGTCGTTCAATTCATTGCTATCCAAT
TGGGGAAACGGTCCACCGGCGATGGACTCGATTACTATACTGATTTCCGG
TCCGTTGTGCTACTTGCCAAAGATTCCATGGAATTTGAGAATTTTATCGA
TCTGGTCCAGTCTATTAATGTCGACAAGATGCTCGGTTGCCAATTGGATC
TCTGGCTTTTTCTGATTGATTTCTGCACAATAAAGTTTCCTCGACACAAT
TTCGATCAATTTCTCGTCATGGTTTCCCTGAAATTGCTGGATAGCTGTCG
TATTCACCTTAACAGTTATCATGATCATGATCATCCTTCCCGAGTGCTGA
ATCACATTGTTATGTGTTACCCTGTCCGGCGTGTCGAGGTCTGGCTGAAT
TTCATCCGGTTGCTATTGAGGACCGGCAATACTCCGGTCTATGAGTTAAT
CGATGCCTGTGAAATGGCACTCAGTCAATTTCCAAACTGTAAATTGCTAT
GGCAACACTACTATTCCAGTACCATCAAATCAGGGGACCAAGAGCTTCCA
AAGAGGATTAAATCCAATGTGACTAAGTTCGGATTTGAGCTCAGGTAAAC
TGTTTTGCATGGTTCGTCATTTGCTGATTCGGATGTGCCAATTGGCAGTG
GTGTTTATGACAGGGATGCAGTGATTGATGAGCAGCGGCTTTAGGATGGG
TTGATGAGTCTGGTAGTGAATTACTGCAAGGAGAATGTCGGCTAATACAA
AGGCAGCATAAAAATTGTTTTAAAAATTGATTAAACCAAAAATCTTAAAG
ATAAAATAGTTAAATCCGTAATTTTGTCAATTTTAGAAATGTTTGTTTTT
CATAAATCAGTAAATTCCCGTTTTGAGTAATAAATACTAATTTTCAATTA
ATATCATAAAATCATTAACCAATCTATATAAGTAATACAT
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protein sequence of SMED30029710-orf-1

>SMED30029710-orf-1 ID=SMED30029710-orf-1|Name=SMED30029710-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1025bp
MHDYEDVIVIDSDSDNDDIDELRQLAIVSMVKHEKKDPFVDNDTRQCCSE
PIDCHSFIPKRNKRLSTELLNENLKKIKVEVDESISGESIDDNTLLNVFK
IESILSFNNCDKTRNLLKEEELKNKLLKILSEKQRFNQINEHSPTSEYLA
NEICYGTALSDSDEDDFDIYTSAVLLPEVITDPDILACHKSISEVKSTID
NLEKSIKLMTSSIQKNLMKSKKISTQIENLKNQKVELHKEIIVNRRKMLV
LNKIKKQKSIELIKYEQKKRNLSLKRVSAAQNGDLFNSSSPVLYQSSPYD
IDCNHVICSAWINNTCNNKLCSYQHPKFSSKLIKTSVKSVKIKENDKVFL
KEMNPTGFICKLSCDACRTNIPISSIHLNDDRFCKSCCQKLVSLMKPTEI
LQQLILIWHHIYKRYVMSIGLPIENRDPTILQNLYKCSEAMKIKLLTAAA
DIPLDLFNSAGCHVILSLNQQQQQSRIDDLLGFIKDLDFSPTLIRFACTL
PFPVPKLYQLMIDSIGFHIDKSSRREDFHLLIDQFTEMSKSLGLSAIDRL
FDWLELCIESRKTDNYCWKIPVFSCAVLEEIIGPHFMPKLSLSSNDIRLG
DKYWIERKDEIFRLAKLYSSSEALSPTNPIDIPYSTWMMEPTIHLLLIKY
MIITYFFTGNEDGALQICERYTTRNYFFEILLSELSLIYNSPILSIISID
GQRFDRTASLIEHTYNKSDWLLNNRSINSCIRLLESVPQILYRANHKSIP
TTTANESLKFYEHFLGFGSIFDDQFMDFIPKLTENEMKSIRNNCSAIWLC
YISLLALVTDHPIDFKTVLRSNRLMPMPSNHLNRVVQFIAIQLGKRSTGD
GLDYYTDFRSVVLLAKDSMEFENFIDLVQSINVDKMLGCQLDLWLFLIDF
CTIKFPRHNFDQFLVMVSLKLLDSCRIHLNSYHDHDHPSRVLNHIVMCYP
VRRVEVWLNFIRLLLRTGNTPVYELIDACEMALSQFPNCKLLWQHYYSST
IKSGDQELPKRIKSNVTKFGFELR*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0002109X1 cell
PLANA:0002111X2 cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 221..248