Ribosomal protein L24

Overview
NameRibosomal protein L24
Smed IDSMED30029652
Length (bp)770
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Ribosomal protein L24 (SMED30029652) t-SNE clustered cells

Violin plots show distribution of expression levels for Ribosomal protein L24 (SMED30029652) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Ribosomal protein L24 (SMED30029652) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Ribosomal protein L24 (SMED30029652) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30029652

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 11

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30029652h1SMcG0002185 SmedASXL_019129SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Smed sexual biotypeSMED30029652h1SMcG0002185 Contig36194newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029652h1SMcG0002185 Contig36194uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029652h1SMcG0002185 Contig36195newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029652h1SMcG0002185 Contig36195uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029652h1SMcG0002185 Contig46068newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029652h1SMcG0002185 Contig46068uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
gutSMED30029652h1SMcG0002185 dd_Smed_v4_1059_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30029652h1SMcG0002185 dd_Smed_v4_1059_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30029652h1SMcG0002185 dd_Smed_v4_1059_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30029652h1SMcG0002185 dd_Smed_v4_1059_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Human
Match: RSL24D1 (ribosomal L24 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18479])

HSP 1 Score: 118.242 bits (295), Expect = 1.621e-32
Identity = 63/139 (45.32%), Postives = 84/139 (60.43%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRIEKC FCS  +YPG G  FVRND +VFR+C+ KC   F KK+NP + +WTKA R +  KEL+   +  FE RR    KY +E    T+  +  V ++ QK++   IM RL    E +K +D+  V   +HLIRAP A
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAPLA 139
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Human
Match: RSL24D1 (ribosomal L24 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18479])

HSP 1 Score: 83.1889 bits (204), Expect = 5.051e-20
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELS 263
            MRIEKC FCS  +YPG G  FVRND +VFR+C+ KC   F KK+NP + +WTKA R +  KEL+
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELT 64
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Human
Match: RPL24 (ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:10325])

HSP 1 Score: 59.3066 bits (142), Expect = 9.924e-11
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQIN 275
            M++E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT   R   +K  S +I 
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQ 68
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Human
Match: RPL24 (ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:10325])

HSP 1 Score: 59.3066 bits (142), Expect = 1.631e-10
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQ 278
            M++E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT   R   +K  S +I +
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQK 69
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Human
Match: RPL24 (ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:10325])

HSP 1 Score: 58.5362 bits (140), Expect = 3.979e-10
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQ 278
            M++E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT   R   +K  S +I +
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQK 69
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Celegans
Match: rpl-24.2 (Probable ribosome biogenesis protein RLP24 [Source:UniProtKB/Swiss-Prot;Acc:Q17606])

HSP 1 Score: 117.857 bits (294), Expect = 7.947e-33
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRIEKC FCS+ +YPG G  FVRNDS VF++CR +C   F KKKNP + ++TKA+R ++ KEL     Q+ E RR    KY++   + T++    +  +  K+  + I KRL  G   +K+  L  V+ KMHLIRAP A
Sbjct:    1 MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARRARGKELINDATQLLEQRRDEPVKYERAMFQKTIEAAKTISALKTKRYGNLIRKRLQPGKIVQKKGLLAKVDKKMHLIRAPVA 139
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Fly
Match: RpL24-like (gene:FBgn0037899 transcript:FBtr0082403)

HSP 1 Score: 121.324 bits (303), Expect = 9.370e-34
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRI+ C FCS+ +YPG G  FVRND +VF++CR KC  AF +KKNP +  WTKA R +  KEL+   +  FE RR V  KY +E  +  L+ +  V ++ +K+  H +M+RL  G +   + D+  V   M LIR+P A
Sbjct:    1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIKEKRTSHFVMERLRKGRQVEIQMDVKDVQRNMSLIRSPAA 139
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Fly
Match: RpL24 (gene:FBgn0032518 transcript:FBtr0342637)

HSP 1 Score: 50.8322 bits (120), Expect = 1.074e-7
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWT 227
            M+I  C F    +YPG G T V+ D + F +  KKC  +++ K+NP +  WT
Sbjct:    1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWT 52
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Fly
Match: RpL24 (gene:FBgn0032518 transcript:FBtr0345449)

HSP 1 Score: 50.8322 bits (120), Expect = 1.074e-7
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWT 227
            M+I  C F    +YPG G T V+ D + F +  KKC  +++ K+NP +  WT
Sbjct:    1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWT 52
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Fly
Match: RpL24 (gene:FBgn0032518 transcript:FBtr0080524)

HSP 1 Score: 50.8322 bits (120), Expect = 1.074e-7
Identity = 20/52 (38.46%), Postives = 30/52 (57.69%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWT 227
            M+I  C F    +YPG G T V+ D + F +  KKC  +++ K+NP +  WT
Sbjct:    1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWT 52
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Zebrafish
Match: rsl24d1 (ribosomal L24 domain containing 1 [Source:NCBI gene;Acc:406266])

HSP 1 Score: 126.331 bits (316), Expect = 5.614e-36
Identity = 66/139 (47.48%), Postives = 85/139 (61.15%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRIEKC FCS  VYPG G  FVRND +VFR+CR KC   F KK+NP +T+WTKA R S  KEL+   +  FE RR    KY++E    T++ + +V  +  K++   IM RL  G E  K  D+  V   +HLI+AP A
Sbjct:    1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRLKKGKELEKAADISEVKKNIHLIKAPHA 139
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Zebrafish
Match: rpl24 (ribosomal protein L24 [Source:NCBI gene;Acc:192301])

HSP 1 Score: 56.6102 bits (135), Expect = 1.071e-9
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWT 227
            M++E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLSKRNPRQINWT 52
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Xenopus
Match: alx1 (ALX homeobox 1 [Source:Xenbase;Acc:XB-GENE-853095])

HSP 1 Score: 124.79 bits (312), Expect = 4.340e-35
Identity = 65/139 (46.76%), Postives = 85/139 (61.15%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MR+EKC FCS  +YPG G  FVRND +VFR+CR KC   F KK+NP + +WTKA R S  KEL+      FE RR    KY +E    T++ +  V ++ QK++   IM RL  G E +K +D+  V   +HLIRAP A
Sbjct:    1 MRVEKCYFCSAPIYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKIRWTKAFRKSAGKELTVDNAFEFEKRRNEPVKYKRELWSKTVEAMKRVEEIKQKRQARFIMNRLKKGKELQKAQDIKEVKQNIHLIRAPHA 139
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Xenopus
Match: ccni2 (cyclin I family, member 2 [Source:Xenbase;Acc:XB-GENE-5874358])

HSP 1 Score: 59.3066 bits (142), Expect = 1.419e-10
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQIN 275
            M++E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT   R   +K  S +I 
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQ 68
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Xenopus
Match: ccni2 (cyclin I family, member 2 [Source:Xenbase;Acc:XB-GENE-5874358])

HSP 1 Score: 58.151 bits (139), Expect = 4.783e-10
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQIN 275
            M++E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT   R   +K  S +I 
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQ 68
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Xenopus
Match: ccni2 (cyclin I family, member 2 [Source:Xenbase;Acc:XB-GENE-5874358])

HSP 1 Score: 58.5362 bits (140), Expect = 6.018e-10
Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 3 
Query:   60 LSSTMRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQ 278
            L S  R+E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT   R   +K  S +I +
Sbjct:   35 LFSLRRVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQK 107
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Xenopus
Match: ccni2 (cyclin I family, member 2 [Source:Xenbase;Acc:XB-GENE-5874358])

HSP 1 Score: 55.8398 bits (133), Expect = 3.329e-9
Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 3 
Query:   78 IEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQIN 275
            +E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT   R   +K  S +I 
Sbjct:    2 VELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQ 67
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Match: Rsl24d1 (ribosomal L24 domain containing 1 [Source:MGI Symbol;Acc:MGI:2681840])

HSP 1 Score: 118.242 bits (295), Expect = 9.581e-33
Identity = 63/139 (45.32%), Postives = 84/139 (60.43%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRIEKC FCS  +YPG G  FVRND +VFR+C+ KC   F KK+NP + +WTKA R +  KEL+   +  FE RR    KY +E    T+  +  V ++ QK++   IM RL    E +K +D+  V   +HLIRAP A
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAPLA 139
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Match: Rsl24d1 (ribosomal L24 domain containing 1 [Source:MGI Symbol;Acc:MGI:2681840])

HSP 1 Score: 76.6406 bits (187), Expect = 6.458e-17
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 3 
Query:  147 SRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            S VFR+C+ KC   F KK+NP + +WTKA R +  KEL+   +  FE RR    KY +E    T+  +  V ++ QK++   IM RL    E +K +D+  V   +HLIRAP A
Sbjct:   27 SYVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAPLA 140
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Match: Rpl24 (ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1915443])

HSP 1 Score: 58.5362 bits (140), Expect = 2.732e-10
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQ 278
            M++E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT   R   +K  S +I +
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQK 69
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Match: Gm20509 (predicted gene 20509 [Source:MGI Symbol;Acc:MGI:5141974])

HSP 1 Score: 56.225 bits (134), Expect = 8.303e-9
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 3 
Query:   84 KCNFCSTNVYPGKGTTFVRNDS--RVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQK 377
            K +  +T   PGK +      +  +VFR+C+ KC   F KK+NP + +WTKA R +  KEL+   +  FE RR    KY +E    T+  +  V ++ QK
Sbjct:  226 KVHEAATQPAPGKVSDAATQSASVQVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQK 325
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Match: Rsl24d1 (ribosomal L24 domain containing 1 [Source:MGI Symbol;Acc:MGI:2681840])

HSP 1 Score: 46.2098 bits (108), Expect = 5.193e-7
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSR 152
            MRIEKC FCS  +YPG G  FVRND +
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCK 27
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q7ZTZ2|RLP24_DANRE (Probable ribosome biogenesis protein RLP24 OS=Danio rerio OX=7955 GN=rsl24d1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.238e-35
Identity = 66/139 (47.48%), Postives = 85/139 (61.15%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRIEKC FCS  VYPG G  FVRND +VFR+CR KC   F KK+NP +T+WTKA R S  KEL+   +  FE RR    KY++E    T++ + +V  +  K++   IM RL  G E  K  D+  V   +HLI+AP A
Sbjct:    1 MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRLKKGKELEKAADISEVKKNIHLIKAPHA 139
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q8SSF6|RLP24_ENCCU (Probable ribosome biogenesis protein RLP24 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=RPL24 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.592e-33
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLI 473
            MRIEKC FCS+N+Y G GT +VRND++VFR+CR KCR  F ++ NP + KWTK SR    KEL       FE R    + YD+   E TL  +P +L++ ++++D  I  R+  G E  KE DL Y+    +L+
Sbjct:    1 MRIEKCWFCSSNIYQGHGTIYVRNDAKVFRFCRPKCRKLFARRVNPRKVKWTKISRKMANKELCNDAILTFEHRLNEPRMYDRAEAERTLSSIPRILEIRKRREDFFIKDRILTGQEMNKESDLKYIERHANLL 134
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q9VGN9|RLP24_DROME (Probable ribosome biogenesis protein RLP24 OS=Drosophila melanogaster OX=7227 GN=RpL24-like PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 9.393e-33
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRI+ C FCS+ +YPG G  FVRND +VF++CR KC  AF +KKNP +  WTKA R +  KEL+   +  FE RR V  KY +E  +  L+ +  V ++ +K+  H +M+RL  G +   + D+  V   M LIR+P A
Sbjct:    1 MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAGKELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIKEKRTSHFVMERLRKGRQVEIQMDVKDVQRNMSLIRSPAA 139
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|O22165|RLP24_ARATH (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.383e-32
Identity = 54/139 (38.85%), Postives = 86/139 (61.87%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MR+EKC FCS+ +YPG G  FVRND+++FR+CR KC   F  K+NP + KWTKA R +  K+++      FE +R   ++YD+   ENTL  + ++ K+   ++  HI  RL    +K+   D+  ++  +H+++AP A
Sbjct:    1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDMKELDQNIHMVQAPGA 139
[Close]
BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Match: sp|Q99L28|RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.702e-32
Identity = 63/139 (45.32%), Postives = 84/139 (60.43%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRIEKC FCS  +YPG G  FVRND +VFR+C+ KC   F KK+NP + +WTKA R +  KEL+   +  FE RR    KY +E    T+  +  V ++ QK++   IM RL    E +K +D+  V   +HLIRAP A
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAPLA 139
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: A0A267EBU6 (TRASH domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig017500g4 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.559e-42
Identity = 67/140 (47.86%), Postives = 102/140 (72.86%), Query Frame = 3 
Query:   69 TMRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
             MR++KC FCS+N+YPG G  FVRNDS  FR+CR KC  AF KK+NP +T+WTKA R+++ K+LS  ++  FE RR  + KY++EA+  T++ + +++++ QK++  HI+KRLA GTE R+  D+  V  ++HL++AP A
Sbjct:    1 AMRLQKCWFCSSNIYPGHGICFVRNDSTEFRFCRSKCHKAFKKKRNPRKTRWTKAYRMARNKDLSQDLSLTFEARRSTLPKYNREALTQTVEAMRKIVQVRQKRQASHILKRLAKGTEMRRLADVRSVEQELHLVQAPHA 140
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: A0A267EX93 (TRASH domain-containing protein (Fragment) OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig025987g2 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.764e-42
Identity = 67/140 (47.86%), Postives = 102/140 (72.86%), Query Frame = 3 
Query:   69 TMRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
             MR++KC FCS+N+YPG G  FVRNDS  FR+CR KC  AF KK+NP +T+WTKA R+++ K+LS  ++  FE RR  + KY++EA+  T++ + +++++ QK++  HI+KRLA GTE R+  D+  V  ++HL++AP A
Sbjct:    3 AMRLQKCWFCSSNIYPGHGICFVRNDSTEFRFCRSKCHKAFKKKRNPRKTRWTKAYRMARNKDLSQDLSLTFEARRSTLPKYNREALTQTVEAMRKIVQVRQKRQASHILKRLAKGTEMRRLADVRSVEQELHLVQAPHA 142
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: A0A267EPI4 (TRASH domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig017500g1 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.839e-42
Identity = 67/139 (48.20%), Postives = 102/139 (73.38%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MR++KC FCS+N+YPG G  FVRNDS  FR+CR KC  AF KK+NP +T+WTKA R+++ K+LS  ++  FE RR  + KY++EA+  T++ + +++++ QK++  HI+KRLA GTE R+  D+  V  ++HL++AP A
Sbjct:    1 MRLQKCWFCSSNIYPGHGICFVRNDSTEFRFCRSKCHKAFKKKRNPRKTRWTKAYRMARNKDLSQDLSLTFEARRSTLPKYNREALTQTVEAMRKIVQVRQKRQASHILKRLAKGTEMRRLADVRSVEQELHLVQAPHA 139
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: L7M440 (Putative 60s ribosomal protein l30 isolog OS=Rhipicephalus pulchellus OX=72859 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.018e-36
Identity = 67/139 (48.20%), Postives = 93/139 (66.91%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRIEKC FCS+ +YPG G  FVRND ++FR+CR KC   F KK+NP +T+WTKA R +  KEL+   +  FE RR V  KY++E  +NT+KV+  V ++  K++ HH+M RL  G E  K++D+  V   + LIR+P A
Sbjct:    1 MRIEKCYFCSSPIYPGHGIQFVRNDCKIFRFCRSKCHKLFKKKRNPRKTRWTKAFRKAAGKELTVDPSFEFEKRRNVPIKYNRELWQNTVKVIQRVEEIKAKRQGHHVMNRLMKGKELDKQRDIKEVQRDLCLIRSPAA 139
[Close]
BLAST of Ribosomal protein L24 vs. TrEMBL
Match: A0A074ZUL2 (TRASH domain-containing protein OS=Opisthorchis viverrini OX=6198 GN=T265_05829 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.267e-36
Identity = 65/139 (46.76%), Postives = 96/139 (69.06%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRI KC FCS+ +YPG GT FVRND + FR+CR KC  AF K +NP + KWTK +R   +KEL+  ++Q FE +R  + +Y+++AM  T++ +P+++ + QK++   I KRL  G E RK +D+  VN +M+LI+AP A
Sbjct:    1 MRIYKCWFCSSPIYPGHGTLFVRNDCKEFRFCRGKCHKAFKKHRNPRKVKWTKIARKCLKKELTDDLSQTFEKKRNSLMRYERDAMLQTIEAVPKIVGIKQKREAAFIKKRLMKGIEMRKAEDVKLVNTQMYLIKAPNA 139
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Cavefish
Match: rsl24d1 (ribosomal L24 domain containing 1 [Source:NCBI gene;Acc:103029268])

HSP 1 Score: 127.102 bits (318), Expect = 2.809e-36
Identity = 66/139 (47.48%), Postives = 86/139 (61.87%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRIEKC FCS  VYPG G  FVRND +VFR+CR KC   F KK+NP +T+WTKA R S  KEL+   +  FE RR +  KY++E    T++ +  V  + QK+    IM RL  G E  K + ++ V   +HLI+AP A
Sbjct:    1 MRIEKCFFCSGPVYPGHGMMFVRNDCKVFRFCRSKCHRNFKKKRNPRKTRWTKAFRKSAGKELTVDNSLEFEKRRCIPVKYNRELWNKTVEAMKRVEAIKQKRSARFIMNRLKKGKELEKAEAINEVKKNIHLIKAPHA 139
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Cavefish
Match: rpl24 (ribosomal protein L24 [Source:NCBI gene;Acc:192301])

HSP 1 Score: 53.1434 bits (126), Expect = 1.781e-8
Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 3 
Query:   78 IEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQ 278
            ++ C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT   R   +K LS + ++
Sbjct:    2 VDLCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLTKRNPRQISWTVLYRRKYKKGLSEEASK 68
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Sea Lamprey
Match: rpl24 (ribosomal protein L24 [Source:NCBI gene;Acc:192301])

HSP 1 Score: 54.6842 bits (130), Expect = 1.113e-9
Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWT 227
            M+++ C+F    +YPG G  F R D +VF++    C  AF+ K+NP +  WT
Sbjct:    1 MKLKLCSFSGYKIYPGHGVRFARVDGKVFQFLDANCESAFLSKRNPRQINWT 52
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Yeast
Match: RLP24 (Essential protein required for ribosomal large subunit biogenesis; associated with pre-60S ribosomal subunits; stimulates the ATPase activity of Afg2p, which is required for release of Rlp24p from the pre-60S particle; has similarity to Rpl24Ap and Rpl24Bp [Source:SGD;Acc:S000003999])

HSP 1 Score: 102.064 bits (253), Expect = 3.935e-27
Identity = 53/135 (39.26%), Postives = 79/135 (58.52%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIR 476
            MRI +C+FCS+  YPG G  FVRND++ FR+CR KC  AF +++NP + KWTKA R +  KEL+      F  RR V  +Y++E +  TLK +  + ++ QK++      R+    EK   +D   V +   L+R
Sbjct:    1 MRIYQCHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMARIEEIRQKRERAFYKNRMRGNKEKDFLRDKKLVESNPELLR 135
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Yeast
Match: RPL24B (Ribosomal 60S subunit protein L24B; not essential for translation but may be required for normal translation rate; homologous to mammalian ribosomal protein L24, no bacterial homolog; RPL24B has a paralog, RPL24A, that arose from the whole genome duplication [Source:SGD;Acc:S000003380])

HSP 1 Score: 59.3066 bits (142), Expect = 1.471e-11
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWT 227
            M++E  +F    +YPG+GT FVR DS++FR+   K    F ++KNP R  WT
Sbjct:    1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 52
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Yeast
Match: RPL24A (Ribosomal 60S subunit protein L24A; not essential for translation but may be required for normal translation rate; homologous to mammalian ribosomal protein L24, no bacterial homolog; RPL24A has a paralog, RPL24B, that arose from the whole genome duplication [Source:SGD;Acc:S000002999])

HSP 1 Score: 58.5362 bits (140), Expect = 2.306e-11
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWT 227
            M++E  +F    +YPG+GT FVR DS++FR+   K    F ++KNP R  WT
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 52
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Nematostella
Match: EDO37625 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SF53])

HSP 1 Score: 115.161 bits (287), Expect = 2.208e-32
Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAP 482
            MR+EKC FCS+ VYPG G +F+RND ++FR+CR KC   F  K+NP + KWTKA R +  K+L+      FE +R V  KY++E   NT++ +  + ++ QK++  HI  RL    E  KE D   V   + LI  P
Sbjct:    1 MRLEKCYFCSSTVYPGHGISFIRNDCKIFRFCRSKCHKNFKMKRNPRKMKWTKAFRKAAGKDLAIDSTFEFEKKRNVPVKYNRELWSNTVRAMKRIEEIKQKRQAQHIKNRLKPNKELVKEADKKEVQQNISLISQP 137
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Nematostella
Match: EDO32549 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SUQ5])

HSP 1 Score: 55.4546 bits (132), Expect = 8.990e-10
Identity = 20/52 (38.46%), Postives = 31/52 (59.62%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWT 227
            M++E CN+    +YPG G  +VR D +VF +  K+C  A + ++NP    WT
Sbjct:    1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWT 52
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Medaka
Match: rsl24d1 (ribosomal L24 domain containing 1 [Source:NCBI gene;Acc:101172974])

HSP 1 Score: 124.02 bits (310), Expect = 4.731e-35
Identity = 65/139 (46.76%), Postives = 85/139 (61.15%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA 488
            MRIEKC FCS  VYPG G  FVRND + FR+CR KC   F KK+NP +T+WTKA R +  KEL+      FE RR +  KY++E    T+  + +V K+ QK++   IM RL  G E  K + +  V   +HLI+AP A
Sbjct:    1 MRIEKCYFCSGPVYPGHGVMFVRNDCKTFRFCRSKCHRNFKKKRNPRKTRWTKAFRKASGKELTVDNALEFEKRRNIPVKYNRELWNKTVDAMMKVEKIKQKRQAQFIMNRLKKGKELEKVETISEVKKNIHLIKAPHA 139
[Close]
BLAST of Ribosomal protein L24 vs. Ensembl Medaka
Match: rpl24 (ribosomal protein L24 [Source:NCBI gene;Acc:101172114])

HSP 1 Score: 56.225 bits (134), Expect = 1.303e-9
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWT 227
            M++E C+F    +YPG G  + R D +VF++   KC  AF+ K+NP +  WT
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWT 52
[Close]
BLAST of Ribosomal protein L24 vs. Planmine SMEST
Match: SMESG000047956.1 (SMESG000047956.1)

HSP 1 Score: 332.798 bits (852), Expect = 5.326e-117
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQAXXXXXXXXXXXXXXXXXXXXXLNVNDILNKEPVQRVKCKPIAKVQEMI 632
            MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA+EYDEEEENEKESEKMDVEENLNVNDILNKEPVQRVKCKPIAKVQEMI
Sbjct:    1 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQAQEYDEEEENEKESEKMDVEENLNVNDILNKEPVQRVKCKPIAKVQEMI 187
[Close]
BLAST of Ribosomal protein L24 vs. Planmine SMEST
Match: SMESG000047956.1 (SMESG000047956.1)

HSP 1 Score: 314.309 bits (804), Expect = 1.032e-109
Identity = 180/187 (96.26%), Postives = 181/187 (96.79%), Query Frame = 3 
Query:   72 MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQAXXXXXXXXXXXXXXXXXXXXXLNVNDILNKEPVQRVKCKPIAKVQEMI 632
            MRIEKCNFCSTNVYPGKGTTFV      FRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA+EYDEEEENEKESEKMDVEENLNVNDILNKEPVQRVKCKPIAKVQEMI
Sbjct:    1 MRIEKCNFCSTNVYPGKGTTFV------FRYCRKKCRLAFMKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQAQEYDEEEENEKESEKMDVEENLNVNDILNKEPVQRVKCKPIAKVQEMI 181
[Close]
BLAST of Ribosomal protein L24 vs. Planmine SMEST
Match: SMESG000047956.1 (SMESG000047956.1)

HSP 1 Score: 244.973 bits (624), Expect = 6.495e-83
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 3 
Query:  192 MKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQAXXXXXXXXXXXXXXXXXXXXXLNVNDILNKEPVQRVKCKPIAKVQEMI 632
            MKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQA+EYDEEEENEKESEKMDVEENLNVNDILNKEPVQRVKCKPIAKVQEMI
Sbjct:    1 MKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQAQEYDEEEENEKESEKMDVEENLNVNDILNKEPVQRVKCKPIAKVQEMI 147
[Close]
BLAST of Ribosomal protein L24 vs. Planmine SMEST
Match: SMESG000045302.1 (SMESG000045302.1)

HSP 1 Score: 148.673 bits (374), Expect = 1.017e-45
Identity = 77/84 (91.67%), Postives = 77/84 (91.67%), Query Frame = 3 
Query:  192 MKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVGTEKRKEKDL 443
            MKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAV     K K L
Sbjct:    1 MKKKNPVRTKWTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMVQKKKDHHIMKRLAVVLRNAKRKIL 84
The following BLAST results are available for this feature:
BLAST of Ribosomal protein L24 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
RSL24D11.621e-3245.32ribosomal L24 domain containing 1 [Source:HGNC Sym... [more]
RSL24D15.051e-2057.81ribosomal L24 domain containing 1 [Source:HGNC Sym... [more]
RPL249.924e-1136.76ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL241.631e-1036.23ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC... [more]
RPL243.979e-1036.23ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl-24.27.947e-3344.60Probable ribosome biogenesis protein RLP24 [Sourc... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 4
Match NameE-valueIdentityDescription
RpL24-like9.370e-3443.17gene:FBgn0037899 transcript:FBtr0082403[more]
RpL241.074e-738.46gene:FBgn0032518 transcript:FBtr0342637[more]
RpL241.074e-738.46gene:FBgn0032518 transcript:FBtr0345449[more]
RpL241.074e-738.46gene:FBgn0032518 transcript:FBtr0080524[more]
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BLAST of Ribosomal protein L24 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rsl24d15.614e-3647.48ribosomal L24 domain containing 1 [Source:NCBI gen... [more]
rpl241.071e-940.38ribosomal protein L24 [Source:NCBI gene;Acc:192301... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
alx14.340e-3546.76ALX homeobox 1 [Source:Xenbase;Acc:XB-GENE-853095][more]
ccni21.419e-1036.76cyclin I family, member 2 [Source:Xenbase;Acc:XB-G... [more]
ccni24.783e-1036.76cyclin I family, member 2 [Source:Xenbase;Acc:XB-G... [more]
ccni26.018e-1036.99cyclin I family, member 2 [Source:Xenbase;Acc:XB-G... [more]
ccni23.329e-936.36cyclin I family, member 2 [Source:Xenbase;Acc:XB-G... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rsl24d19.581e-3345.32ribosomal L24 domain containing 1 [Source:MGI Symb... [more]
Rsl24d16.458e-1740.35ribosomal L24 domain containing 1 [Source:MGI Symb... [more]
Rpl242.732e-1036.23ribosomal protein L24 [Source:MGI Symbol;Acc:MGI:1... [more]
Gm205098.303e-935.00predicted gene 20509 [Source:MGI Symbol;Acc:MGI:51... [more]
Rsl24d15.193e-766.67ribosomal L24 domain containing 1 [Source:MGI Symb... [more]
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BLAST of Ribosomal protein L24 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q7ZTZ2|RLP24_DANRE4.238e-3547.48Probable ribosome biogenesis protein RLP24 OS=Dani... [more]
sp|Q8SSF6|RLP24_ENCCU2.592e-3344.03Probable ribosome biogenesis protein RLP24 OS=Ence... [more]
sp|Q9VGN9|RLP24_DROME9.393e-3343.17Probable ribosome biogenesis protein RLP24 OS=Dros... [more]
sp|O22165|RLP24_ARATH6.383e-3238.85Probable ribosome biogenesis protein RLP24 OS=Arab... [more]
sp|Q99L28|RLP24_MOUSE6.702e-3245.32Probable ribosome biogenesis protein RLP24 OS=Mus ... [more]
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BLAST of Ribosomal protein L24 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A267EBU61.559e-4247.86TRASH domain-containing protein (Fragment) OS=Macr... [more]
A0A267EX931.764e-4247.86TRASH domain-containing protein (Fragment) OS=Macr... [more]
A0A267EPI41.839e-4248.20TRASH domain-containing protein OS=Macrostomum lig... [more]
L7M4401.018e-3648.20Putative 60s ribosomal protein l30 isolog OS=Rhipi... [more]
A0A074ZUL21.267e-3646.76TRASH domain-containing protein OS=Opisthorchis vi... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rsl24d12.809e-3647.48ribosomal L24 domain containing 1 [Source:NCBI gen... [more]
rpl241.781e-834.33ribosomal protein L24 [Source:NCBI gene;Acc:192301... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpl241.113e-938.46ribosomal protein L24 [Source:NCBI gene;Acc:192301... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 3
Match NameE-valueIdentityDescription
RLP243.935e-2739.26Essential protein required for ribosomal large sub... [more]
RPL24B1.471e-1144.23Ribosomal 60S subunit protein L24B; not essential ... [more]
RPL24A2.306e-1144.23Ribosomal 60S subunit protein L24A; not essential ... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 2
Match NameE-valueIdentityDescription
EDO376252.208e-3242.34Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
EDO325498.990e-1038.46Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Ribosomal protein L24 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rsl24d14.731e-3546.76ribosomal L24 domain containing 1 [Source:NCBI gen... [more]
rpl241.303e-940.38ribosomal protein L24 [Source:NCBI gene;Acc:101172... [more]
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BLAST of Ribosomal protein L24 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000047956.15.326e-11799.47SMESG000047956.1[more]
SMESG000047956.11.032e-10996.26SMESG000047956.1[more]
SMESG000047956.16.495e-8399.32SMESG000047956.1[more]
SMESG000045302.11.017e-4591.67SMESG000045302.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029652 ID=SMED30029652|Name=Ribosomal protein L24|organism=Schmidtea mediterranea sexual|type=transcript|length=770bp
ATTTTAAAACACATTTTAAAAACATGAAACTAATAAAAATTGTTTAAATA
TTACTTTATTTAAGTTCAACTATGCGTATTGAAAAATGCAATTTCTGTTC
TACAAATGTGTATCCTGGCAAAGGAACTACTTTTGTTAGAAATGACTCAA
GGGTTTTTAGGTATTGTCGCAAGAAATGTCGATTGGCATTTATGAAAAAG
AAGAATCCTGTTAGAACAAAATGGACTAAAGCTTCAAGAGTTTCAAAGCA
AAAAGAACTTTCAACTCAAATTAATCAAGTGTTTGAAATGCGAAGAATAG
TTATGAAAAAATACGACAAAGAAGCAATGGAAAATACCTTAAAAGTGTTA
CCAGAGGTTTTAAAAATGGTGCAGAAGAAGAAAGATCATCATATAATGAA
ACGATTGGCTGTCGGTACTGAGAAACGCAAAGAGAAAGATCTTGATTACG
TCAACAACAAAATGCATCTAATTAGAGCTCCTCAAGCTGAAGAATATGAT
GAGGAAGAAGAAAATGAAAAAGAAAGCGAAAAAATGGATGTTGAAGAAAA
CTTAAATGTTAATGATATTCTCAATAAAGAACCAGTCCAACGAGTCAAAT
GTAAACCCATAGCTAAAGTTCAAGAAATGATATAAAAATAAATTGAATAC
ACCTTTATTTACTACATGTATGATCTTAGTGTATGACTTCAATTGTGTAA
TATCAAATTATCTTTTATATAAGTATCAACCTGCGTTGTAGTCACGTGAG
AAAGATAGCGAATATCTAAA
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protein sequence of SMED30029652-orf-1

>SMED30029652-orf-1 ID=SMED30029652-orf-1|Name=SMED30029652-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=188bp
MRIEKCNFCSTNVYPGKGTTFVRNDSRVFRYCRKKCRLAFMKKKNPVRTK
WTKASRVSKQKELSTQINQVFEMRRIVMKKYDKEAMENTLKVLPEVLKMV
QKKKDHHIMKRLAVGTEKRKEKDLDYVNNKMHLIRAPQAEEYDEEEENEK
ESEKMDVEENLNVNDILNKEPVQRVKCKPIAKVQEMI*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0000429neoblast
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR038630L24e/L24_sf
IPR011017TRASH_dom
IPR000988Ribosomal_L24e-rel
IPR023441Ribosomal_L24e_dom
IPR023442Ribosomal_L24e_CS
Vocabulary: cellular component
TermDefinition
GO:0005840ribosome
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 180..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..157
NoneNo IPR availablePANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 1..149
NoneNo IPR availableSUPERFAMILYSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 4..56
IPR011017TRASH domainSMARTSM007464TRASHcoord: 6..44
e-value: 5.1E-4
score: 29.4
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3DG3DSA:2.30.170.20coord: 1..68
e-value: 1.9E-24
score: 87.4
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 1..65
e-value: 5.6E-26
score: 90.5
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 1..149
IPR000988Ribosomal protein L24e-relatedCDDcd00472Ribosomal_L24e_L24coord: 1..54
e-value: 7.97494E-23
score: 84.161
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 8..25