Secreted peptide prohormone-15

Overview
NameSecreted peptide prohormone-15
Smed IDSMED30029602
Length (bp)384
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Secreted peptide prohormone-15 (SMED30029602) t-SNE clustered cells

Violin plots show distribution of expression levels for Secreted peptide prohormone-15 (SMED30029602) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Secreted peptide prohormone-15 (SMED30029602) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Secreted peptide prohormone-15 (SMED30029602) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30029602

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
Smed sexual biotypeSMED30029602SMESG000014389.1 Contig45750newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029602SMESG000014389.1 Contig45750uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
pharynxSMED30029602 BK007013smed_ncbi_20200123PMID:20967238
Collins JJ et al., 2010		whole organism asexual adult colorimetric in situ hybridization evidence
cephalic gangliaSMED30029602 BK007013smed_ncbi_20200123PMID:20967238
Collins JJ et al., 2010		whole organism asexual adult colorimetric in situ hybridization evidence
ventral nerve cordSMED30029602 BK007013smed_ncbi_20200123PMID:20967238
Collins JJ et al., 2010		whole organism asexual adult colorimetric in situ hybridization evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Secreted peptide prohormone-15 vs. TrEMBL
Match: E3CTI8 (Secreted peptide prohormone-15 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.721e-59
Identity = 95/104 (91.35%), Postives = 101/104 (97.12%), Query Frame = 2 
Query:    2 FRFSKMTHVTLLITVGLFHVISGYPQTYELNQSDRGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YERVE 313
            FRFSKMTHVTLLITVGLFHVISGYPQTYELNQSDRGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGK+FDPIQFGKRFDPI FG+ ++ ++
Sbjct:    3 FRFSKMTHVTLLITVGLFHVISGYPQTYELNQSDRGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQ 106
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BLAST of Secreted peptide prohormone-15 vs. TrEMBL
Match: A0A193PE80 (Neuropeptide-23 (Fragment) OS=Dugesia japonica OX=6161 GN=DjNp23 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.987e-26
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 2 
Query:  104 RGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YERVE 313
            + + PI+F KRFDPIQFGK+FDPI FGKRFDPIQFGK+FDPI FGK+FDPIQFGK+FDPIMFG+ ++ ++
Sbjct:    3 KKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQ 72

HSP 2 Score: 99.7525 bits (247), Expect = 6.852e-25
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 2 
Query:  110 YYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YE 304
            + PI F K+FDPI FGKRFDPIQFGK+FDPI FGKRFDPIQFGKKFDPI FGKRFDPI FG+ +E
Sbjct:   14 FDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFE 78

HSP 3 Score: 95.5153 bits (236), Expect = 3.098e-23
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 2 
Query:  125 FDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YERV 310
            F K+FDPI FGKRFDPIQFGK+FDPI FGKRFDPIQFGKKFDPI FGKRFDPI FG+ ++ +
Sbjct:    1 FGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPI 62

HSP 4 Score: 93.2041 bits (230), Expect = 2.259e-22
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 2 
Query:   77 QTYELNQSDRGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDP 280
            + ++  Q  + + PI+F KRFDPIQFGK+FDPI FGKRFDPIQFGK+FDPI FGK+FDPIQFGK+F+P
Sbjct:   12 KRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFEP 79

HSP 5 Score: 84.3445 bits (207), Expect = 6.761e-19
Identity = 41/54 (75.93%), Postives = 50/54 (92.59%), Query Frame = 2 
Query:  152 FGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YERVE 313
            FGK+FDPI FGKRFDPIQFGK+FDPI FGK+FDPIQFGK+FDPIMFG+ ++ ++
Sbjct:    1 FGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQ 54
[Close]
BLAST of Secreted peptide prohormone-15 vs. TrEMBL
Match: A0A193PE85 (Neuropeptide-51 (Fragment) OS=Dugesia japonica OX=6161 GN=DjNp51 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.018e-25
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:   71 YPQTYELNQSDRGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YERVE 313
            + + ++  Q  + + PI+F KRFDPIQFGK+FDPI FGKRFDPIQFGK+FDPI FGK+FDPIQFGK+FDPI FG+ +  +E
Sbjct:   29 FEKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIQFGKRFYPIE 109

HSP 2 Score: 97.8265 bits (242), Expect = 9.605e-24
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 2 
Query:   77 QTYELNQSDRGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR 295
            + ++  Q  + + PI+F KRFDPIQFGK+FDPI FGKRFDPIQFGK+FDPIQFGK+F PI+F +RFDPIMFG+
Sbjct:   49 KRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIQFGKRFYPIEFSRRFDPIMFGK 121

HSP 3 Score: 95.5153 bits (236), Expect = 9.045e-23
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 2 
Query:  116 PILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YERV 310
            PI F K+FDPI FGKRFDPIQFGK+FDPI FGKRFDPIQFGKKFDPIQFGKRF PI F R ++ +
Sbjct:   53 PIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIQFGKRFYPIEFSRRFDPI 117

HSP 4 Score: 88.9669 bits (219), Expect = 3.502e-20
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 2 
Query:   77 QTYELNQSDRGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YERV 310
            + ++ +Q    + P +F  +FD  +F KRFDPIQFGK+FDPI FGKRFDPIQFGKKFDPI FGKRFDPI FG+ ++ +
Sbjct:    4 KRFDPSQFRMKFDPKMFGDKFDSYRFEKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPI 81

HSP 5 Score: 81.6481 bits (200), Expect = 2.408e-17
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 2 
Query:  116 PILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YERVE 313
            P  F  +FDP  FG +FD  +F KRFDPIQFGK+FDPI FGK+FDPIQFGK+FDPIMFG+ ++ ++
Sbjct:    8 PSQFRMKFDPKMFGDKFDSYRFEKRFDPIQFGKKFDPIMFGKRFDPIQFGKKFDPIMFGKRFDPIQ 73
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BLAST of Secreted peptide prohormone-15 vs. TrEMBL
Match: A0A1I8IE52 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.001e-14
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 2 
Query:   86 ELNQSDRGYY-PILFDKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKK---FDPIQFGKR---FDPIMFGR 295
            E+N   R Y+ PI + K+   FDPI +G +   FDPI +GK+   FDPI +GK+   FDPI +GKK   FDPI +GK+   FDPI +G+
Sbjct: 2203 EVNAEKRAYFDPINYGKKRAYFDPINYGNKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGK 2291

HSP 2 Score: 75.8702 bits (185), Expect = 2.729e-13
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  104 RGYY-PILFDKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKK---FDPIQFGKR---FDPIMFGR 295
            R Y+ PI + K+   FDPI +GK+   FDPI +GK+   FDPI +GK+   FDPI +GKK   FDPI +GK+   FDPI +G+
Sbjct: 2233 RAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGK 2315

HSP 3 Score: 75.8702 bits (185), Expect = 2.729e-13
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  104 RGYY-PILFDKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKK---FDPIQFGKR---FDPIMFGR 295
            R Y+ PI + K+   FDPI +GK+   FDPI +GK+   FDPI +GK+   FDPI +GKK   FDPI +GK+   FDPI +G+
Sbjct: 2257 RAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGK 2339

HSP 4 Score: 75.8702 bits (185), Expect = 2.729e-13
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  104 RGYY-PILFDKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKK---FDPIQFGKR---FDPIMFGR 295
            R Y+ PI + K+   FDPI +GK+   FDPI +GK+   FDPI +GK+   FDPI +GKK   FDPI +GK+   FDPI +G+
Sbjct: 2281 RAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGK 2363

HSP 5 Score: 75.8702 bits (185), Expect = 2.729e-13
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  104 RGYY-PILFDKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKK---FDPIQFGKR---FDPIMFGR 295
            R Y+ PI + K+   FDPI +GK+   FDPI +GK+   FDPI +GK+   FDPI +GKK   FDPI +GK+   FDPI +G+
Sbjct: 2305 RAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGK 2387

HSP 6 Score: 61.2326 bits (147), Expect = 3.582e-8
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 2 
Query:  104 RGYY-PILFDKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKR---FDPIQFGKKFDPIQF-GKRFDPIMF 289
            R Y+ PI + K+   FDPI +GK+   FDPI +GK+   FDPI +GK+   FDPI +GKK    Q  G  FDPI +
Sbjct: 2329 RAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYFDPINYGKKRAYYQSRGGYFDPINY 2404
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BLAST of Secreted peptide prohormone-15 vs. TrEMBL
Match: A0A267F9R7 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig003729g1 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.688e-12
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:   98 SDRGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YE 304
            S + + P+L  KRFDP+   KRFDP+   KRFDP+   KRFDP+   K++DP+ F KR+DP++F + Y+
Sbjct:   48 STKRFDPLLSMKRFDPLLSMKRFDPLLSMKRFDPLLSMKRFDPLLSMKRYDPLLFRKRYDPLLFRKRYD 116

HSP 2 Score: 67.781 bits (164), Expect = 5.673e-12
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 2 
Query:  116 PILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMF 289
            P+L  KRFDP+   KRFDP+   KRFDP+   KR+DP+ F K++DP+ F KR+DP++F
Sbjct:   63 PLLSMKRFDPLLSMKRFDPLLSMKRFDPLLSMKRYDPLLFRKRYDPLLFRKRYDPLLF 120

HSP 3 Score: 66.6254 bits (161), Expect = 1.494e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:  116 PILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YE 304
            P+L  KRFDP+   KRFDP+   KRFDP+   KRFDP+   K+FDP+   KR+DP++F + Y+
Sbjct:   45 PLLSTKRFDPLLSMKRFDPLLSMKRFDPLLSMKRFDPLLSMKRFDPLLSMKRYDPLLFRKRYD 107

HSP 4 Score: 60.4622 bits (145), Expect = 3.965e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:  131 KRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR*YE 304
            K+FDP+   KRFDP+   KRFDP+   KRFDP+   K+FDP+   KRFDP++  + Y+
Sbjct:   41 KKFDPLLSTKRFDPLLSMKRFDPLLSMKRFDPLLSMKRFDPLLSMKRFDPLLSMKRYD 98
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Nematostella
Match: EDO30076 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T1T8])

HSP 1 Score: 48.9062 bits (115), Expect = 1.338e-8
Identity = 19/73 (26.03%), Postives = 34/73 (46.58%), Query Frame = 2 
Query:   77 QTYELNQSDRGYYPILFDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPIMFGR 295
            Q  +  Q+ +   P+   +     Q G+   P+Q G+   P+Q G+   P+Q G+   P+Q G    P+  G+
Sbjct:   35 QPIQTAQAGQAIQPMQAGQPIQTAQAGQAIQPMQAGQAIQPMQSGQAIQPMQSGQAIQPMQSGHPIQPMQAGQ 107

HSP 2 Score: 46.2098 bits (108), Expect = 1.528e-7
Identity = 16/53 (30.19%), Postives = 27/53 (50.94%), Query Frame = 2 
Query:  125 FDKRFDPIQFGKRFDPIQFGKRFDPIQFGKRFDPIQFGKKFDPIQFGKRFDPI 283
              +   P+Q G+   P+Q G+   P+Q G+   P+Q G    P+Q G+   P+
Sbjct:   60 AGQAIQPMQAGQAIQPMQSGQAIQPMQSGQAIQPMQSGHPIQPMQAGQAIQPM 112
The following BLAST results are available for this feature:
BLAST of Secreted peptide prohormone-15 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
E3CTI82.721e-5991.35Secreted peptide prohormone-15 OS=Schmidtea medite... [more]
A0A193PE801.987e-2672.86Neuropeptide-23 (Fragment) OS=Dugesia japonica OX=... [more]
A0A193PE855.018e-2564.20Neuropeptide-51 (Fragment) OS=Dugesia japonica OX=... [more]
A0A1I8IE525.001e-1447.19Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A267F9R73.688e-1247.83Uncharacterized protein OS=Macrostomum lignano OX=... [more]
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO300761.338e-826.03Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Secreted peptide prohormone-15 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Secreted peptide prohormone-15 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029602 ID=SMED30029602|Name=Secreted peptide prohormone-15|organism=Schmidtea mediterranea sexual|type=transcript|length=384bp
TTTTAGATTTTCAAAGATGACACATGTCACTTTACTTATAACTGTAGGTT
TATTCCACGTCATATCTGGGTACCCACAGACCTATGAACTTAATCAGTCT
GATAGAGGATATTATCCGATCCTGTTTGACAAAAGATTTGATCCAATTCA
ATTTGGTAAGCGATTTGATCCAATTCAATTTGGAAAACGATTTGATCCAA
TACAATTTGGTAAGCGATTTGATCCGATTCAATTCGGAAAAAAATTTGAT
CCTATTCAATTTGGAAAAAGATTTGATCCAATAATGTTTGGCAGATAATA
TGAAAGAGTAGAATGAAAATAATTATTTGAATAATTCAATTGGGATTGTT
TCTTTTTTAAATAAATAAAGGTTATTTATTGTTA
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Aliases
The feature 'Secreted peptide prohormone-15' has the following synonyms
Synonym
spp-15
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000044cephalic ganglia
PLANA:0000097ventral nerve cord
Vocabulary: biological process
TermDefinition
GO:0007218neuropeptide signaling pathway
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.773