Dimer_Tnp_hAT domain-containing protein
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppSub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30029589 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 1
Homology
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: T1I3J9 (Dimer_Tnp_hAT domain-containing protein OS=Rhodnius prolixus OX=13249 PE=4 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.019e-7 Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 2 Query: 974 DVLKHLLQKAIDHKLTFQPQKDYQNAPSLIIKVH*ELIQFESDVVRDGEIERMYNFLLTISPTSVESERAYMYKKYMC 1207 + LK LQ AID L P ++ PSL K+ E+ FE + ++ +Y+FL+TI PTSVESERA+ Y+C Sbjct: 127 NALKRKLQAAIDETLNTSPVPTFKKNPSLEQKIKDEITFFEKTGTKGTYLQNVYDFLMTIVPTSVESERAFSAAGYIC 204
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: T1IEH5 (Dimer_Tnp_hAT domain-containing protein OS=Rhodnius prolixus OX=13249 PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.803e-7 Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 2 Query: 974 DVLKHLLQKAIDHKLTFQPQKDYQNAPSLIIKVH*ELIQFESDVVRDGEIERMYNFLLTISPTSVESERAYMYKKYMC 1207 + LK LQ AID L P ++ PSL K+ E+ FE + ++ +Y+FL+TI PTSVESERA+ Y+C Sbjct: 29 NALKRKLQAAIDETLNTSPVPAFKKIPSLEQKIKDEITFFEKTETKGTYLQNVYDFLMTIVPTSVESERAFSAAGYIC 106
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: T1HWC4 (Dimer_Tnp_hAT domain-containing protein OS=Rhodnius prolixus OX=13249 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.845e-7 Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 2 Query: 974 DVLKHLLQKAIDHKLTFQPQKDYQNAPSLIIKVH*ELIQFESDVVRDGEIERMYNFLLTISPTSVESERAYMYKKYMC 1207 + LK LQ AID L P ++ PSL K+ E+ FE + ++ +Y+FL+TI PTSVESERA+ Y+C Sbjct: 157 NALKRKLQAAIDETLNTSPVPAFKKIPSLEQKIKDEITFFEKTGTKGTYLQNVYDFLMTIVPTSVESERAFSAAGYIC 234
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: T1HS18 (Dimer_Tnp_hAT domain-containing protein OS=Rhodnius prolixus OX=13249 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 3.558e-7 Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 2 Query: 974 DVLKHLLQKAIDHKLTFQPQKDYQNAPSLIIKVH*ELIQFESDVVRDGEIERMYNFLLTISPTSVESERAYMYKKYMC 1207 + LK LQ AID L P ++ PSL K+ E+ FE + ++ +Y+FL+TI PTSVESERA+ Y+C Sbjct: 190 NALKRKLQAAIDETLNTSPVPAFKKIPSLEQKIKDEITFFEKTGTKGTYLQNVYDFLMTIVPTSVESERAFSAAGYIC 267
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Match: T1HY73 (Dimer_Tnp_hAT domain-containing protein OS=Rhodnius prolixus OX=13249 PE=4 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.047e-6 Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 2 Query: 974 DVLKHLLQKAIDHKLTFQPQKDYQNAPSLIIKVH*ELIQFESDVVRDGEIERMYNFLLTISPTSVESERAYMYKKYMC 1207 + LK LQ AID L P ++ PSL K+ E+ FE + ++ +Y+FL++I PTSVESERA+ Y+C Sbjct: 120 NALKRKLQAAIDVTLNTSPVPAFKKIPSLEQKIKDEITFFEKTGTKGTYLQNVYDFLMSIVPTSVESERAFSAAGYIC 197
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000060444.1 (SMESG000060444.1) HSP 1 Score: 350.903 bits (899), Expect = 1.308e-121 Identity = 169/175 (96.57%), Postives = 170/175 (97.14%), Query Frame = 1 Query: 322 MNYKFKEYKKGIENNKSLWEYFFLERNGQVVKCKTCSKLINCTDESTSAFHSDFRTAHKITAVKRGFEDYGGISEISTNLYTPKNKTVESRCRQNASLLIADATFNFIPSHLHKGSGQLALDNKIELLYLIKEDETIYLAYFSLSITNTRWWVPKKIQMLIFSGNFQSINFYTYC 846 MNYK KEYKKGIENNKSLWEYFFLERNGQVVKCKTCSKLINCTDESTSAFHSDFRTAHKITAVKRGFEDYGGISEISTNLYTPKNKTVES CRQNASLLIAD+TFNFIPSHLHK GQLALDNKIELLY IKEDETIYLAYFSLSITNTRWWVPKKIQMLIFSGNFQSINFYTYC Sbjct: 1 MNYKSKEYKKGIENNKSLWEYFFLERNGQVVKCKTCSKLINCTDESTSAFHSDFRTAHKITAVKRGFEDYGGISEISTNLYTPKNKTVESLCRQNASLLIADSTFNFIPSHLHKACGQLALDNKIELLYRIKEDETIYLAYFSLSITNTRWWVPKKIQMLIFSGNFQSINFYTYC 175
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000060886.1 (SMESG000060886.1) HSP 1 Score: 317.39 bits (812), Expect = 1.176e-108 Identity = 153/158 (96.84%), Postives = 153/158 (96.84%), Query Frame = 1 Query: 322 MNYKFKEYKKGIENNKSLWEYFFLERNGQVVKCKTCSKLINCTDESTSAFHSDFRTAHKITAVKRGFEDYGGISEISTNLYTPKNKTVESRCRQNASLLIADATFNFIPSHLHKGSGQLALDNKIELLYLIKEDETIYLAYFSLSITNTRWWVPKKIQ 795 MNYKFKEYKKGIENNKSLWEYFFLERNGQVVKCKTCSKLINCTDESTSAFHSDFRTAHKITAVKRGFEDYGGISEISTNLYTPKNKTVES CRQNASLLIADATFNFIPSHLHK GQLALDNKIELLY IKEDETIYL YFSLSITNTRWWVPKKIQ Sbjct: 1 MNYKFKEYKKGIENNKSLWEYFFLERNGQVVKCKTCSKLINCTDESTSAFHSDFRTAHKITAVKRGFEDYGGISEISTNLYTPKNKTVESLCRQNASLLIADATFNFIPSHLHKACGQLALDNKIELLYRIKEDETIYLPYFSLSITNTRWWVPKKIQ 158
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Match: SMESG000049212.1 (SMESG000049212.1) HSP 1 Score: 41.9726 bits (97), Expect = 2.250e-6 Identity = 26/85 (30.59%), Postives = 42/85 (49.41%), Query Frame = 2 Query: 953 IHEPSTADVLKHLLQKAIDHKLTFQPQKDYQNAPSLIIKVH*ELIQFESDVVRDGEIERMYNFLLTISPTSVESERAYMYKKYMC 1207 ++E S ++ L ++K +P +N S K+ E+ F+S + +++ YNFLL I PT VESER + MC Sbjct: 14 LNEKSISEQLNQAIEKGFIS--ASKPSTRVENTLS---KLQKEMPLFKSGGTKGDYLQKFYNFLLAIRPTIVESERVFSAAGLMC 93 HSP 2 Score: 28.4906 bits (62), Expect = 2.250e-6 Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = 3 Query: 1200 ICAKILSRQVDVTIDILCLMTS 1265 +C+KI SR D+TID LC + S Sbjct: 92 MCSKIRSRLNDITIDALCFLRS 113 The following BLAST results are available for this feature:
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of Dimer_Tnp_hAT domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 3
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30029589 ID=SMED30029589|Name=Dimer_Tnp_hAT domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1266bpback to top protein sequence of SMED30029589-orf-1 >SMED30029589-orf-1 ID=SMED30029589-orf-1|Name=SMED30029589-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=176bp MNYKFKEYKKGIENNKSLWEYFFLERNGQVVKCKTCSKLINCTDESTSAFback to top Annotated Terms
The following terms have been associated with this transcript:
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