60S acidic ribosomal protein P1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30029501 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 13Note: Hover over icons to view figure legend
Homology
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Human
Match: RPLP1 (ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]) HSP 1 Score: 58.151 bits (139), Expect = 2.791e-11 Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNI 263 M S AC Y++LIL DD + +T DKINA++KAA V+ P F PG+F+K L+N N L+ N+ Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEP-FWPGLFAKALANVNIGSLICNV 63
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Celegans
Match: rla-1 (60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:P91913]) HSP 1 Score: 53.9138 bits (128), Expect = 4.771e-10 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 3 Query: 96 ACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN 236 AC YA+LIL DD + IT +KI +LKAA+V+F P + PG+F+K L Sbjct: 8 ACVYAALILQDDEVAITGEKIATLLKAANVEFEP-YWPGLFAKALEG 53
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Celegans
Match: rla-1 (60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:P91913]) HSP 1 Score: 53.9138 bits (128), Expect = 4.771e-10 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 3 Query: 96 ACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN 236 AC YA+LIL DD + IT +KI +LKAA+V+F P + PG+F+K L Sbjct: 8 ACVYAALILQDDEVAITGEKIATLLKAANVEFEP-YWPGLFAKALEG 53
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Celegans
Match: rla-1 (60S acidic ribosomal protein P1 [Source:UniProtKB/Swiss-Prot;Acc:P91913]) HSP 1 Score: 53.9138 bits (128), Expect = 4.771e-10 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 3 Query: 96 ACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN 236 AC YA+LIL DD + IT +KI +LKAA+V+F P + PG+F+K L Sbjct: 8 ACVYAALILQDDEVAITGEKIATLLKAANVEFEP-YWPGLFAKALEG 53
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Fly
Match: RpLP1 (gene:FBgn0002593 transcript:FBtr0078056) HSP 1 Score: 63.5438 bits (153), Expect = 1.066e-13 Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNIGN 269 M K+ AC YASLIL+DD + +T +KIN ILKAA+V+ P + PG+F+K L N + L+ NIG+ Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEP-YWPGLFAKALEGINVKDLITNIGS 65
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Fly
Match: RpLP1 (gene:FBgn0002593 transcript:FBtr0331932) HSP 1 Score: 63.5438 bits (153), Expect = 1.066e-13 Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNIGN 269 M K+ AC YASLIL+DD + +T +KIN ILKAA+V+ P + PG+F+K L N + L+ NIG+ Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEP-YWPGLFAKALEGINVKDLITNIGS 65
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Zebrafish
Match: rplp1 (ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]) HSP 1 Score: 52.7582 bits (125), Expect = 6.002e-10 Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSK 224 M S AC Y++LIL DD + +T DK+NA++KAA V P F PG+F+K Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKLNALIKAAGVTIEP-FWPGLFAK 49
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Zebrafish
Match: rplp1 (ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]) HSP 1 Score: 53.1434 bits (126), Expect = 1.813e-9 Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN 236 M S AC Y++LIL DD + +T DK+NA++KAA V P F PG+F+K L++ Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKLNALIKAAGVTIEP-FWPGLFAKALAS 53
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Xenopus
Match: rplp1 (ribosomal protein, large, P1 [Source:NCBI gene;Acc:549958]) HSP 1 Score: 50.8322 bits (120), Expect = 1.833e-8 Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSNNPRQLLMNIGN 269 M S AC Y++LIL DD + IT DKI+ ++K A V P F P +F+K L+N +NIG+ Sbjct: 1 MASVSELACIYSALILHDDEVSITEDKISTLIKTAGVTIEP-FWPSLFAKALAN------INIGS 58
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Xenopus
Match: rplp1 (ribosomal protein, large, P1 [Source:NCBI gene;Acc:549958]) HSP 1 Score: 49.6766 bits (117), Expect = 5.066e-8 Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNI 263 M S AC Y++LIL DD + IT DKI+ ++K A V P F P +F+K L+N N L+ N+ Sbjct: 1 MASVSELACIYSALILHDDEVSITEDKISTLIKTAGVTIEP-FWPSLFAKALANINIGSLISNV 63
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Mouse
Match: Rplp1 (ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]) HSP 1 Score: 58.151 bits (139), Expect = 2.525e-11 Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNI 263 M S AC Y++LIL DD + +T DKINA++KAA V P F PG+F+K L+N N L+ N+ Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEP-FWPGLFAKALANVNIGSLICNV 63
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Mouse
Match: LO018689.5 (60S acidic ribosomal protein P1-like [Source:NCBI gene;Acc:102637947]) HSP 1 Score: 49.2914 bits (116), Expect = 5.472e-8 Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 3 Query: 87 SRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNI 263 S+ C Y++LIL D + +T KINA +KAA V P F PG F+K L+N N L+ N+ Sbjct: 5 SKLTCIYSALILQDKEVMVTEVKINAFIKAAGVSIEP-FWPGSFAKALANVNTGSLICNV 63
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Mouse
Match: LO018689.5 (60S acidic ribosomal protein P1-like [Source:NCBI gene;Acc:102637947]) HSP 1 Score: 49.2914 bits (116), Expect = 5.472e-8 Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 3 Query: 87 SRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNI 263 S+ C Y++LIL D + +T KINA +KAA V P F PG F+K L+N N L+ N+ Sbjct: 5 SKLTCIYSALILQDKEVMVTEVKINAFIKAAGVSIEP-FWPGSFAKALANVNTGSLICNV 63
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Mouse
Match: Gm5244 (predicted pseudogene 5244 [Source:MGI Symbol;Acc:MGI:3646958]) HSP 1 Score: 45.0542 bits (105), Expect = 2.288e-6 Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILM-DDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSNNPRQLLMNIGN 269 M S AC Y++LIL DD + +T DKINA++KAA + F P +F+K L+N +NIG+ Sbjct: 1 MASASELACIYSALILHEDDEVMVTEDKINALIKAA---LIKPFWPSLFAKALAN------VNIGS 57
BLAST of 60S acidic ribosomal protein P1 vs. UniProt/SwissProt
Match: sp|P08570|RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster OX=7227 GN=RpLP1 PE=1 SV=2) HSP 1 Score: 63.5438 bits (153), Expect = 1.068e-12 Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNIGN 269 M K+ AC YASLIL+DD + +T +KIN ILKAA+V+ P + PG+F+K L N + L+ NIG+ Sbjct: 1 MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEP-YWPGLFAKALEGINVKDLITNIGS 65
BLAST of 60S acidic ribosomal protein P1 vs. UniProt/SwissProt
Match: sp|P19944|RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus OX=10116 GN=Rplp1 PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.084e-10 Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNI 263 M S AC Y++LIL DD + +T DKINA++KAA V+ P F PG+F+K L+N N L+ N+ Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEP-FWPGLFAKALANVNIGSLICNV 63
BLAST of 60S acidic ribosomal protein P1 vs. UniProt/SwissProt
Match: sp|P05386|RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens OX=9606 GN=RPLP1 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.340e-10 Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNI 263 M S AC Y++LIL DD + +T DKINA++KAA V+ P F PG+F+K L+N N L+ N+ Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEP-FWPGLFAKALANVNIGSLICNV 63
BLAST of 60S acidic ribosomal protein P1 vs. UniProt/SwissProt
Match: sp|Q56K14|RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus OX=9913 GN=RPLP1 PE=3 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.340e-10 Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNI 263 M S AC Y++LIL DD + +T DKINA++KAA V+ P F PG+F+K L+N N L+ N+ Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEP-FWPGLFAKALANVNIGSLICNV 63
BLAST of 60S acidic ribosomal protein P1 vs. UniProt/SwissProt
Match: sp|P47955|RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus OX=10090 GN=Rplp1 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.766e-10 Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNI 263 M S AC Y++LIL DD + +T DKINA++KAA V P F PG+F+K L+N N L+ N+ Sbjct: 1 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEP-FWPGLFAKALANVNIGSLICNV 63
BLAST of 60S acidic ribosomal protein P1 vs. TrEMBL
Match: G4VJS1 (Putative 60s acidic ribosomal protein P1 OS=Schistosoma mansoni OX=6183 GN=Smp_041980 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.298e-11 Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 3 Query: 84 KSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNIG 266 KS AC YA+L+L DD +D+T+DKIN +LKAA++ FV ++LP +F+ L+ N R LLM++G Sbjct: 3 KSELACVYAALMLADDDIDVTADKINTVLKAANIKFVESYLPNLFATALNGKNVRDLLMSMG 64
BLAST of 60S acidic ribosomal protein P1 vs. TrEMBL
Match: A0A1E1WDA7 (Uncharacterized protein OS=Pectinophora gossypiella OX=13191 GN=g.1780 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.699e-11 Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNIGN 269 M K+ AC YA+LIL+DD + +T +KI+ ILKAA+VD P + PG+F+K L N R+L+ NIG+ Sbjct: 1 MASKAELACVYAALILVDDEVAVTGEKISTILKAAAVDVEP-YWPGLFAKALEGVNVRELITNIGS 65
BLAST of 60S acidic ribosomal protein P1 vs. TrEMBL
Match: A0A183W1W5 (Uncharacterized protein OS=Trichobilharzia regenti OX=157069 GN=TRE_LOCUS6723 PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 3.538e-11 Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 3 Query: 84 KSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNIGN 269 KS AC YA+L+L DD +D+T+DKIN ILKAA++ FV +LP +F+ LS N + LLM++G+ Sbjct: 4 KSELACVYAALMLADDDIDVTADKINTILKAANIKFVEPYLPNLFATALSGKNIKDLLMSMGS 66
BLAST of 60S acidic ribosomal protein P1 vs. TrEMBL
Match: A0A094ZI98 (60S acidic ribosomal protein P1 OS=Schistosoma haematobium OX=6185 GN=MS3_00784 PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 3.585e-11 Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 3 Query: 84 KSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNIG 266 KS AC YA+L+L DD +D+T+DKIN ILKAA++ FV ++LP +F+ L+ N + LLM++G Sbjct: 3 KSELACVYAALMLADDDIDVTADKINTILKAANIKFVESYLPNLFATALNGKNVKDLLMSLG 64
BLAST of 60S acidic ribosomal protein P1 vs. TrEMBL
Match: A0A183MT24 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS19199 PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 3.624e-11 Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 3 Query: 84 KSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN-NPRQLLMNIG 266 KS AC YA+L+L DD +D+T+DKIN ILKAA++ FV ++LP +F+ L+ N + LLM++G Sbjct: 3 KSELACVYAALMLADDDIDVTADKINTILKAANIKFVESYLPNLFATALNGKNVKDLLMSMG 64
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Cavefish
Match: rplp1 (ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:103034431]) HSP 1 Score: 51.9878 bits (123), Expect = 3.842e-9 Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN 236 M S AC Y++LIL DD + +T DK+NA++KAA V P F PG+F+K L + Sbjct: 1 MASVSELACIYSALILHDDDVTVTEDKLNALIKAAGVTIEP-FWPGLFAKALGS 53
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Sea Lamprey
Match: RPLP1 (ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]) HSP 1 Score: 55.0694 bits (131), Expect = 6.131e-11 Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSN 236 M S AC Y++LIL DD + IT DKINA++KAA V P F PG+F+K L Sbjct: 9 MASVSELACIYSALILHDDEVAITEDKINALIKAAGVTVEP-FWPGLFAKALGT 61
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Nematostella
Match: EDO40097 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S837]) HSP 1 Score: 51.2174 bits (121), Expect = 2.874e-9 Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSNN 239 M S AC Y++LIL DD + IT+DKI ++KAA ++ P F PG+F+K L + Sbjct: 1 MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEP-FWPGLFAKALQGH 54
BLAST of 60S acidic ribosomal protein P1 vs. Planmine SMEST
Match: SMESG000062259.1 (SMESG000062259.1) HSP 1 Score: 141.354 bits (355), Expect = 3.203e-44 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 3 Query: 75 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSNNPRQLLMNIGNXXXXXXXXXXXXXLTVXXXXXXXXXXXXXXXXXXXXDMGFGLFD 401 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSNNPRQLLMNIGNSPAPVASVSSDSALTVEKKEEAKEEKKAESSSESEADMGFGLFD Sbjct: 1 MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKILSNNPRQLLMNIGNSPAPVASVSSDSALTVEKKEEAKEEKKAESSSESEADMGFGLFD 109 The following BLAST results are available for this feature:
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 1
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 3
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 4
BLAST of 60S acidic ribosomal protein P1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of 60S acidic ribosomal protein P1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 1
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 1
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of 60S acidic ribosomal protein P1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of 60S acidic ribosomal protein P1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 1
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30029501 ID=SMED30029501|Name=60S acidic ribosomal protein P1|organism=Schmidtea mediterranea sexual|type=transcript|length=444bpback to top protein sequence of SMED30029501-orf-1 >SMED30029501-orf-1 ID=SMED30029501-orf-1|Name=SMED30029501-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=110bp MDEKSRDACTYASLILMDDSLDITSDKINAILKAASVDFVPAFLPGMFSKback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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