S5 DRBM domain-containing protein

Overview
NameS5 DRBM domain-containing protein
Smed IDSMED30029457
Length (bp)1506
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of S5 DRBM domain-containing protein (SMED30029457) t-SNE clustered cells

Violin plots show distribution of expression levels for S5 DRBM domain-containing protein (SMED30029457) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of S5 DRBM domain-containing protein (SMED30029457) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for S5 DRBM domain-containing protein (SMED30029457) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30029457

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30029457SMESG000017232.1 SmedASXL_019227SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30029457SMESG000017232.1 SmedASXL_019227SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
pharynxSMED30029457SMESG000023987.1 SMESG000017232.1 SMESG000080953.1 SMESG000080618.1 SMESG000072700.1 SMESG000069163.1 SMESG000065358.1 SMESG000064426.1 SMESG000062577.1 SMESG000062150.1 SMESG000060043.1 SMESG000057576.1 SMESG000056292.1 SMESG000054362.1 SMESG000052870.1 SMESG000051517.1 SMESG000050768.1 SMESG000050005.1 SMESG000049698.1 SMESG000045813.1 SMESG000041318.1 SMESG000040743.1 SMESG000039279.1 SMESG000038973.1 SMESG000038321.1 SMESG000029893.1 SMESG000028198.1 SMESG000023025.1 SMESG000021897.1 SMESG000018432.1 SMESG000018410.1 SMESG000017430.1 SMESG000006729.1 SMESG000005334.1 dd_Smed_v4_1692_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30029457SMESG000023987.1 SMESG000017232.1 SMESG000080953.1 SMESG000080618.1 SMESG000072700.1 SMESG000069163.1 SMESG000065358.1 SMESG000064426.1 SMESG000062577.1 SMESG000062150.1 SMESG000060043.1 SMESG000057576.1 SMESG000056292.1 SMESG000054362.1 SMESG000052870.1 SMESG000051517.1 SMESG000050768.1 SMESG000050005.1 SMESG000049698.1 SMESG000045813.1 SMESG000041318.1 SMESG000040743.1 SMESG000039279.1 SMESG000038973.1 SMESG000038321.1 SMESG000029893.1 SMESG000028198.1 SMESG000023025.1 SMESG000021897.1 SMESG000018432.1 SMESG000018410.1 SMESG000017430.1 SMESG000006729.1 SMESG000005334.1 dd_Smed_v4_1692_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30029457SMESG000023987.1 SMESG000017232.1 SMESG000080953.1 SMESG000080618.1 SMESG000072700.1 SMESG000069163.1 SMESG000065358.1 SMESG000064426.1 SMESG000062577.1 SMESG000062150.1 SMESG000060043.1 SMESG000057576.1 SMESG000056292.1 SMESG000054362.1 SMESG000052870.1 SMESG000051517.1 SMESG000050768.1 SMESG000050005.1 SMESG000049698.1 SMESG000045813.1 SMESG000041318.1 SMESG000040743.1 SMESG000039279.1 SMESG000038973.1 SMESG000038321.1 SMESG000029893.1 SMESG000028198.1 SMESG000023025.1 SMESG000021897.1 SMESG000018432.1 SMESG000018410.1 SMESG000017430.1 SMESG000006729.1 SMESG000005334.1 dd_Smed_v4_1692_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30029457SMESG000023987.1 SMESG000017232.1 SMESG000080953.1 SMESG000080618.1 SMESG000072700.1 SMESG000069163.1 SMESG000065358.1 SMESG000064426.1 SMESG000062577.1 SMESG000062150.1 SMESG000060043.1 SMESG000057576.1 SMESG000056292.1 SMESG000054362.1 SMESG000052870.1 SMESG000051517.1 SMESG000050768.1 SMESG000050005.1 SMESG000049698.1 SMESG000045813.1 SMESG000041318.1 SMESG000040743.1 SMESG000039279.1 SMESG000038973.1 SMESG000038321.1 SMESG000029893.1 SMESG000028198.1 SMESG000023025.1 SMESG000021897.1 SMESG000018432.1 SMESG000018410.1 SMESG000017430.1 SMESG000006729.1 SMESG000005334.1 dd_Smed_v4_1692_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30029457SMESG000023987.1 SMESG000017232.1 SMESG000080953.1 SMESG000080618.1 SMESG000072700.1 SMESG000069163.1 SMESG000065358.1 SMESG000064426.1 SMESG000062577.1 SMESG000062150.1 SMESG000060043.1 SMESG000057576.1 SMESG000056292.1 SMESG000054362.1 SMESG000052870.1 SMESG000051517.1 SMESG000050768.1 SMESG000050005.1 SMESG000049698.1 SMESG000045813.1 SMESG000041318.1 SMESG000040743.1 SMESG000039279.1 SMESG000038973.1 SMESG000038321.1 SMESG000029893.1 SMESG000028198.1 SMESG000023025.1 SMESG000021897.1 SMESG000018432.1 SMESG000018410.1 SMESG000017430.1 SMESG000006729.1 SMESG000005334.1 dd_Smed_v4_1692_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30029457SMESG000023987.1 SMESG000017232.1 SMESG000080953.1 SMESG000080618.1 SMESG000072700.1 SMESG000069163.1 SMESG000065358.1 SMESG000064426.1 SMESG000062577.1 SMESG000062150.1 SMESG000060043.1 SMESG000057576.1 SMESG000056292.1 SMESG000054362.1 SMESG000052870.1 SMESG000051517.1 SMESG000050768.1 SMESG000050005.1 SMESG000049698.1 SMESG000045813.1 SMESG000041318.1 SMESG000040743.1 SMESG000039279.1 SMESG000038973.1 SMESG000038321.1 SMESG000029893.1 SMESG000028198.1 SMESG000023025.1 SMESG000021897.1 SMESG000018432.1 SMESG000018410.1 SMESG000017430.1 SMESG000006729.1 SMESG000005334.1 dd_Smed_v4_1692_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30029457SMESG000023987.1 SMESG000017232.1 SMESG000080953.1 SMESG000080618.1 SMESG000072700.1 SMESG000069163.1 SMESG000065358.1 SMESG000064426.1 SMESG000062577.1 SMESG000062150.1 SMESG000060043.1 SMESG000057576.1 SMESG000056292.1 SMESG000054362.1 SMESG000052870.1 SMESG000051517.1 SMESG000050768.1 SMESG000050005.1 SMESG000049698.1 SMESG000045813.1 SMESG000041318.1 SMESG000040743.1 SMESG000039279.1 SMESG000038973.1 SMESG000038321.1 SMESG000029893.1 SMESG000028198.1 SMESG000023025.1 SMESG000021897.1 SMESG000018432.1 SMESG000018410.1 SMESG000017430.1 SMESG000006729.1 SMESG000005334.1 dd_Smed_v4_1692_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cilated neuronSMED30029457SMESG000023987.1 SMESG000017232.1 SMESG000080953.1 SMESG000080618.1 SMESG000072700.1 SMESG000069163.1 SMESG000065358.1 SMESG000064426.1 SMESG000062577.1 SMESG000062150.1 SMESG000060043.1 SMESG000057576.1 SMESG000056292.1 SMESG000054362.1 SMESG000052870.1 SMESG000051517.1 SMESG000050768.1 SMESG000050005.1 SMESG000049698.1 SMESG000045813.1 SMESG000041318.1 SMESG000040743.1 SMESG000039279.1 SMESG000038973.1 SMESG000038321.1 SMESG000029893.1 SMESG000028198.1 SMESG000023025.1 SMESG000021897.1 SMESG000018432.1 SMESG000018410.1 SMESG000017430.1 SMESG000006729.1 SMESG000005334.1 dd_Smed_v4_1692_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Human
Match: MRPS5 (mitochondrial ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:14498])

HSP 1 Score: 169.474 bits (428), Expect = 1.191e-46
Identity = 110/320 (34.38%), Postives = 170/320 (53.12%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFS--TGEKDEEYEKALLEMR---NRQNKKKISRYVPPLRRGWTSAHFGGLSLGKP-VAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEI 1149
            S F   + D LW+G     G   K+ RGKR   + + +LN G+ IG+      WPGLN P+     +   +  + E+ E+ E  +++ R   +R+ K K+ R      RGW+   +GG+SLG P     G+ ++ FD+ +LE + V TM + +GR +     V VGNG G AG++  K+ +   + + AK +A   L      E  T++H   +  + T I +K +  G GL CHR I T+C+LIGIKDMYAKV G      L   +F   L RQET+Q +A++  L+VV+   E    P+V+A P   + K P+  +E+
Sbjct:   88 SFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKR-----ERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRG-LSRQETHQQLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEV 401
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Human
Match: MRPS5 (mitochondrial ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:14498])

HSP 1 Score: 62.7734 bits (151), Expect = 2.226e-10
Identity = 51/169 (30.18%), Postives = 84/169 (49.70%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFS--TGEKDEEYEKALLEMR---NRQNKKKISRYVPPLRRGWTSAHFGGLSLGKP-VAVVGQNWDGFDSSVLEF-----KVVCTMNSSKGRYRRFLSCVM 681
            S F   + D LW+G     G   K+ RGKR   + + +LN G+ IG+      WPGLN P+     +   +  + E+ E+ E  +++ R   +R+ K K+ R      RGW+   +GG+SLG P     G+ ++ FD+ +LE       ++  M S K R  +F  C++
Sbjct:   88 SFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKR-----ERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVFLLGKLLIGWMLSGKQRTEQFTICII 251
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Celegans
Match: mrps-5 (Putative 28S ribosomal protein S5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93425])

HSP 1 Score: 177.563 bits (449), Expect = 4.584e-50
Identity = 125/374 (33.42%), Postives = 191/374 (51.07%), Query Frame = 1 
Query:  199 NSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVA--SGVDINRFSTGEKDEEY-------EKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKV--AKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLD-----GRVFQVRKRE--PFYLNLPNRINKRAERHRYRN 1266
            N+ + F+ RSG  LW+ +T        + +G+R   +    LN   +IG + + I++ GLN P+      + N  S  E+ E+         K +LE R+   KK+    + P+ RG++     G  LG P  + G N+D F++  LE K    M +  GR     + V+ GNG GLAGYA  K+   +T+  +      A+ +L    L EGRT++   Y   RNT++F + R  G GL CH  +  +C+ IGIKD+Y KVEG TKN   +   F   L  QET+Q +A R  L+VV+        P ++A P S   KT ++ E  + DRL+LD     GR + +RK +  PF+ NL   ++ R  +H +RN
Sbjct:   13 NTVNFFMRRSGPELWKTLTSV--SKSGQKKGRRNTRQPVRPLNRFYRIGSSPMKIEFAGLNAPIRMRETENQNLMSIAEQTEDEIRDSMGGTKKILEERDTGKKKRNREKLHPMERGFSGTQLVGQKLGAPPPLDGVNFDDFETYCLEVKRTSNMTNVFGRVHTMSALVVTGNGRGLAGYAVGKAPIHRTTTAIINGMGMASRKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGSTKNYLALTHAFVTGLLNQETHQQLAERKGLHVVEMSPSRHFLPQIVASPISTELKTEETLE--ALDRLNLDDFYGEGR-YPLRKPKSLPFFSNLEGHLDARWRKHPFRN 381
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Fly
Match: mRpS5 (gene:FBgn0044510 transcript:FBtr0111147)

HSP 1 Score: 184.882 bits (468), Expect = 4.771e-53
Identity = 132/378 (34.92%), Postives = 200/378 (52.91%), Query Frame = 1 
Query:  157 NAVLLSKQSSIF-----LENSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLDGRVFQVRKRE-PFYLNLPNRINKRAERHRYRNMA 1272
            N  LLS    I      L N+ S F     + +W GVT      KKR RGK    +   +LN G+ IG       WPGLN+P+  G ++       ++ + E  +L++R+     K+ + + P+ RGW+ +   G S+G P  V  + +  FD+ VLE K+V  M  + GR RR+    + GNGNGLAG+A AK+   +T+++ +K +A  +L + +L E RT++H        TKIF   + +G GLVCHR I+T+CK+IGIKD+YAK+EG T N Q IA+ F   L  Q +YQ IAN  + N+VQ     + +  V   P    T T  +++EI +    L  ++   RK   PFY+        + ++ R+RN  
Sbjct:   22 NQSLLSSHEPILPGYIGLRNT-SFFNKLPAEDIWRGVTAVSNAGKKRGRGKGSGKKVAKDLNKGQSIGFGKCGRIWPGLNSPLIRGNELINQQKLNENLDRENGILKLRDSMGSFKLMK-LNPIDRGWSGSKMPGRSIGPPDPVGDEEFVSFDTRVLENKIVFIMKGNMGRKRRYSVLSVTGNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINISLCENRTIFHDFRTDFGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGST-NIQNIAKAFFIGLMTQRSYQYIANETNSNIVQLQKTRNRFIDVKGMPFPNSTLT-QNTQEIDYMHFTLGNQIVLQRKGTVPFYVYSKGHDLHQFKKERFRNQV 395
[Close]
BLAST of S5 DRBM domain-containing protein vs. Ensembl Fly
Match: mRpS5 (gene:FBgn0044510 transcript:FBtr0111146)

HSP 1 Score: 184.882 bits (468), Expect = 4.771e-53
Identity = 132/378 (34.92%), Postives = 200/378 (52.91%), Query Frame = 1 
Query:  157 NAVLLSKQSSIF-----LENSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLDGRVFQVRKRE-PFYLNLPNRINKRAERHRYRNMA 1272
            N  LLS    I      L N+ S F     + +W GVT      KKR RGK    +   +LN G+ IG       WPGLN+P+  G ++       ++ + E  +L++R+     K+ + + P+ RGW+ +   G S+G P  V  + +  FD+ VLE K+V  M  + GR RR+    + GNGNGLAG+A AK+   +T+++ +K +A  +L + +L E RT++H        TKIF   + +G GLVCHR I+T+CK+IGIKD+YAK+EG T N Q IA+ F   L  Q +YQ IAN  + N+VQ     + +  V   P    T T  +++EI +    L  ++   RK   PFY+        + ++ R+RN  
Sbjct:   22 NQSLLSSHEPILPGYIGLRNT-SFFNKLPAEDIWRGVTAVSNAGKKRGRGKGSGKKVAKDLNKGQSIGFGKCGRIWPGLNSPLIRGNELINQQKLNENLDRENGILKLRDSMGSFKLMK-LNPIDRGWSGSKMPGRSIGPPDPVGDEEFVSFDTRVLENKIVFIMKGNMGRKRRYSVLSVTGNGNGLAGFATAKAPEVRTALRKSKNRAGQKLINISLCENRTIFHDFRTDFGKTKIFCFQKPDGYGLVCHRAIQTICKVIGIKDLYAKIEGST-NIQNIAKAFFIGLMTQRSYQYIANETNSNIVQLQKTRNRFIDVKGMPFPNSTLT-QNTQEIDYMHFTLGNQIVLQRKGTVPFYVYSKGHDLHQFKKERFRNQV 395
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Zebrafish
Match: mrps5 (mitochondrial ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-060929-264])

HSP 1 Score: 177.178 bits (448), Expect = 3.897e-50
Identity = 121/326 (37.12%), Postives = 177/326 (54.29%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINR-FSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPV--AVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAA---LRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLH 1167
            S F   + D LW GV+   G   ++ RGKR   + K +LN G+ +G+      WPGLNTP+     I +    GE +++   A LE R R   +K  +      RGWT   +GG+SLG P+     G+ ++ FDS V+E K V T+   + R R   + V VGNGNG+AG+A  K+ +   +++ AK +A      +E YN     T++H      + T + +K +  G GL CHR + T+CKLIGIKDMYAKV+G   N   I R     L  QET+Q +A++  LNVV+  AE    P+V+A P+ G  + P+  +E+   RLH
Sbjct:   55 SFFNKLTADELWRGVSAETGAGARKGRGKRAKRKVKKDLNKGQSLGEGRAGYLWPGLNTPIFKDGSIQKPMQRGEAEQKEMTAALE-RQRDEWEKRRKAKIKKERGWTGGSWGGVSLG-PLDPGPNGETYEDFDSRVIELKSVFTVTPKESRKRSISALVAVGNGNGVAGFALGKAADRTAALRKAKNRAMNYLYYIERYN---DYTIYHDIESKYKKTTLRMKKQNKGYGLRCHRAVITLCKLIGIKDMYAKVDGSV-NLLNITRALFQGLASQETHQTLADKKQLNVVEFRAEQGPLPIVVARPQLGARQDPEVEDEVPNTRLH 374
[Close]
BLAST of S5 DRBM domain-containing protein vs. Ensembl Zebrafish
Match: mrps5 (mitochondrial ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-060929-264])

HSP 1 Score: 176.792 bits (447), Expect = 5.601e-50
Identity = 121/326 (37.12%), Postives = 176/326 (53.99%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINR-FSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPV--AVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAA---LRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLH 1167
            S F   + D LW GV+   G   ++ RGKR   + K +LN G+ +G+      WPGLNTP+     I +    GE +++   A LE R R   +K  +      RGWT   +GG+SLG P+     G+ ++ FDS V+E K V T+   + R R   + V VGNGNG+AG+A  K+ +   +++ AK +A      +E YN     T++H      + T + +K +  G GL CHR + T+CKLIGIKDMYAKV+G   N   I R     L  QET+Q +A++  LNVV+  AE    P+V+A P  G  + P+  +E+   RLH
Sbjct:   55 SFFNKLTADELWRGVSAETGAGARKGRGKRAKRKVKKDLNKGQSLGEGRAGYLWPGLNTPIFKDGSIQKPMQRGEAEQKEMTAALE-RQRDEWEKRRKAKIKKERGWTGGSWGGVSLG-PLDPGPNGETYEDFDSRVIELKSVFTVTPKESRKRSISALVAVGNGNGVAGFALGKAADRTAALRKAKNRAMNYLYYIERYN---DYTIYHDIESKYKKTTLRMKKQNKGYGLRCHRAVITLCKLIGIKDMYAKVDGSV-NLLNITRALFQGLASQETHQTLADKKQLNVVEFRAEQGPLPIVVARPHLGARQDPEGEDEVPNTRLH 374
[Close]
BLAST of S5 DRBM domain-containing protein vs. Ensembl Xenopus
Match: aifm3 (apoptosis inducing factor, mitochondria associated 3 [Source:Xenbase;Acc:XB-GENE-5763104])

HSP 1 Score: 159.458 bits (402), Expect = 2.452e-43
Identity = 113/360 (31.39%), Postives = 181/360 (50.28%), Query Frame = 1 
Query:  103 TFNTGFHSSPLCGIMMNTNAVLLSKQSSIFLENSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEK--DEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKP-VAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLD 1173
            T  +   +S L  I+     V +    +I      S F   + + LW GV    G   ++ RGKR   + K +LN G+ +G+      WPGLN P+     +   +  ++   EE +  +++ R+  +KK+  R      RGWT   +GG+S+G P     G+ ++ FD  V+E K V  M + +GR +   + V+VGNGNG+AG+A  K+ +   +++ AK +A   L         T++H      + T I +K +  G GL CHR I T+CKLIGI DMYAKV G      L   +F     +QET+Q++A+   L+VV+   E    P+++A P+  + K P+   E+   +L  D
Sbjct:   23 TVRSSCQNSHLANILQVHPCVSVLHSVTIQQNRQSSFFNKLTANELWRGVLAESGTGARKGRGKRTKKKLKKDLNRGQILGEGRSGYLWPGLNAPIVKSGSVQTIAKRDQAQQEEMQAEIIKQRDEWDKKRKMRI--KRERGWTGNSWGGVSIGVPDPGPNGETYEDFDCRVIEVKNVFNMTAKEGRKKSVSALVVVGNGNGVAGFALGKASDRMIALRKAKNRAVHYLHYIERYNDHTIYHDVTSSFKRTSIRMKKQNLGYGLHCHRAIITICKLIGITDMYAKVSGSINLLNLTRALFLG-FAKQETHQELADNKGLHVVEFREERGPLPVIVASPKGALRKEPELEGEVPDTKLDWD 379
[Close]
BLAST of S5 DRBM domain-containing protein vs. Ensembl Mouse
Match: Mrps5 (mitochondrial ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1924971])

HSP 1 Score: 161.384 bits (407), Expect = 8.263e-44
Identity = 111/313 (35.46%), Postives = 172/313 (54.95%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTP-VASGV--DINRFSTGEKDEEYEKALLEMR---NRQNKKKISRYVPPLRRGWTSAHFGGLSLGKP-VAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTK 1125
            S F   + + LW+G     G   ++ RGKR   + + +LN G+ IG+      WPGLN P + SGV  +I + S  E+ ++ E  ++E R   +R+ K K+ R      RGW+   +GG+S+G P     G+ ++ FD+ +LE + V  M + +GR +     V VGNGNG AG+A  K+ +   + + AK +A   L      EG T++H   +  + T+I +K +  G GL CHR I T+C+LIGIKDMYA+V G      L   +F   L RQET+Q +A++  L+VV+   E    P+V+A P   ++K
Sbjct:   90 SFFTKLTAEELWKGALAETGAGARKGRGKRTKKKKRKDLNRGQIIGEGRSGFLWPGLNVPLIKSGVVQNIGQRSK-EEQQKVEATMVEQREEWDRKRKIKVKR-----ERGWSGNTWGGVSIGPPDPGPNGETYEDFDTRILEVRNVFNMTAKEGRKKSVRVLVAVGNGNGAAGFAIGKAADRGDAFRKAKNRAIHYLHYIERYEGHTIFHDISLRFKRTQIRMKKQPRGYGLRCHRAIITICRLIGIKDMYARVTGSMNMLNLTRGLFHG-LARQETHQHLADKKGLHVVEFREECGPLPIVVASPHGALSK 395
[Close]
BLAST of S5 DRBM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q93425|RT05_CAEEL (Putative 28S ribosomal protein S5, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=mrps-5 PE=3 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 5.831e-49
Identity = 125/374 (33.42%), Postives = 191/374 (51.07%), Query Frame = 1 
Query:  199 NSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVA--SGVDINRFSTGEKDEEY-------EKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKV--AKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLD-----GRVFQVRKRE--PFYLNLPNRINKRAERHRYRN 1266
            N+ + F+ RSG  LW+ +T        + +G+R   +    LN   +IG + + I++ GLN P+      + N  S  E+ E+         K +LE R+   KK+    + P+ RG++     G  LG P  + G N+D F++  LE K    M +  GR     + V+ GNG GLAGYA  K+   +T+  +      A+ +L    L EGRT++   Y   RNT++F + R  G GL CH  +  +C+ IGIKD+Y KVEG TKN   +   F   L  QET+Q +A R  L+VV+        P ++A P S   KT ++ E  + DRL+LD     GR + +RK +  PF+ NL   ++ R  +H +RN
Sbjct:   13 NTVNFFMRRSGPELWKTLTSV--SKSGQKKGRRNTRQPVRPLNRFYRIGSSPMKIEFAGLNAPIRMRETENQNLMSIAEQTEDEIRDSMGGTKKILEERDTGKKKRNREKLHPMERGFSGTQLVGQKLGAPPPLDGVNFDDFETYCLEVKRTSNMTNVFGRVHTMSALVVTGNGRGLAGYAVGKAPIHRTTTAIINGMGMASRKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGSTKNYLALTHAFVTGLLNQETHQQLAERKGLHVVEMSPSRHFLPQIVASPISTELKTEETLE--ALDRLNLDDFYGEGR-YPLRKPKSLPFFSNLEGHLDARWRKHPFRN 381
[Close]
BLAST of S5 DRBM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q2KID9|RT05_BOVIN (28S ribosomal protein S5, mitochondrial OS=Bos taurus OX=9913 GN=MRPS5 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.672e-48
Identity = 116/330 (35.15%), Postives = 174/330 (52.73%), Query Frame = 1 
Query:  202 SRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFS--TGEKDEEYEKALLEMR---NRQNKKKISRYVPPLRRGWTSAHFGGLSLGKP-VAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLD 1173
            S S F   + D LW+G     G   ++ RGKR   + + +LN G+ IG+      WPGLN P+     I   +  + E+ E+ E  +++ R   +R+ K K+ R      RGW+   +GG+SLG P     G+ +D FD+ +LE + V  M + +GR R     V VGNG G AG+A  K+     + + AK +A   L      E  T++H   +  + T I +K +  G GL CHR I T+C+LIGIKDMYAKV G      L   +F   L RQET+Q +A++ SL+VV+   E    P+V+A P+  + K P+  +E+   +L  D
Sbjct:   86 SYSFFTKLTADELWKGALAETGAGARKGRGKRTKRKRRKDLNRGQIIGEGRRGFLWPGLNAPLMKSGAIQTITQRSKEEQEKVEADMVQQREEWDRKRKMKVKR-----ERGWSGNSWGGISLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGRGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLTFKRTHIKMKKQPRGYGLRCHRAITTICRLIGIKDMYAKVSGSVNMLSLTRGLFQG-LSRQETHQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDIKLDWD 409
[Close]
BLAST of S5 DRBM domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5REJ1|RT05_PONAB (28S ribosomal protein S5, mitochondrial OS=Pongo abelii OX=9601 GN=MRPS5 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.961e-47
Identity = 116/325 (35.69%), Postives = 171/325 (52.62%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFS--TGEKDEEYEKALLEMRN---RQNKKKISRYVPPLRRGWTSAHFGGLSLGKP-VAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSE--EISFD 1158
            S F   + D LW+G     G   K+ RGKR   + + +LN G+ IG+      WPGLN PV     +   +  + E+ E+ E  +++ R    R+ K K+ R      RGW+   +GGLSLG P     G+ ++ FD+ +LE + V TM + +GR +     V VGNG G AG+A  K+ +   + + AK +A   L      E  T++H   +  + T I +K +  G GL CHR I T+C+LIGIKDMYAKV G T    L   +F   L RQET+Q +A++  L+VV+   E    P+V+A P   + K P+  E  +I  D
Sbjct:   88 SFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPVMKNGTVQTIAQRSKEEQEKVEADVIQQREEWERKKKMKVKR-----ERGWSGNSWGGLSLGPPDPGPSGETYEDFDTRILEVRNVFTMTAKEGRRKSIRVLVAVGNGKGAAGFAIGKATDRMDAFRKAKNRAVHHLYYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSTNMLSLTQGLFHG-LSRQETHQQLADKKGLHVVEIREECGPLPIVVASPRGALRKDPEPDEVPDIKLD 406
[Close]
BLAST of S5 DRBM domain-containing protein vs. UniProt/SwissProt
Match: sp|A8Y3Q1|RT05_CAEBR (Putative 28S ribosomal protein S5, mitochondrial OS=Caenorhabditis briggsae OX=6238 GN=mrps-5 PE=3 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 2.650e-46
Identity = 111/326 (34.05%), Postives = 170/326 (52.15%), Query Frame = 1 
Query:  337 KIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEY-------EKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKR--KAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLD-----GRVFQVRKRE--PFYLNLPNRINKRAERHRYRN 1266
            +IG + + +++ GLN P+    D +  +  E+ E+         K +LE R+   KK+    + P+ RG++     G  LG P  V G N+D F++  LE K    M +  GR     + V+ GNG GLAGYA  K+   +T+  +      A+ ++    L EGRT++   Y   RNT++F + R  G GL CH  +  +C+ IGIKD+Y KVEG TKN   +   F   L  QET+Q +A R  L+VV+        P ++A P S   KT ++ E  + DRL+LD     GR + +RK +  PF+ NL   ++ R  +H +RN
Sbjct:   39 RIGSSPMKVEFAGLNAPMRLN-DESLMTIAEQTEDEIRDLMGGTKKILEERDTGKKKRNREKLHPMERGFSGTQLVGQKLGAPPPVDGVNFDDFETYCLEVKRTSNMTNVFGRVHTMSALVVTGNGRGLAGYAVGKAPIHRTTTAIINGIGMASRKIFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGSTKNYLALTHAFVTGLLNQETHQQLAERKGLHVVEMSPSRHFLPQIVASPISTELKTEETLE--ALDRLNLDDFYGEGR-YPLRKPKALPFFSNLEGHLDARWRKHPFRN 360
[Close]
BLAST of S5 DRBM domain-containing protein vs. UniProt/SwissProt
Match: sp|P82675|RT05_HUMAN (28S ribosomal protein S5, mitochondrial OS=Homo sapiens OX=9606 GN=MRPS5 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 5.718e-46
Identity = 110/320 (34.38%), Postives = 170/320 (53.12%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFS--TGEKDEEYEKALLEMR---NRQNKKKISRYVPPLRRGWTSAHFGGLSLGKP-VAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEI 1149
            S F   + D LW+G     G   K+ RGKR   + + +LN G+ IG+      WPGLN P+     +   +  + E+ E+ E  +++ R   +R+ K K+ R      RGW+   +GG+SLG P     G+ ++ FD+ +LE + V TM + +GR +     V VGNG G AG++  K+ +   + + AK +A   L      E  T++H   +  + T I +K +  G GL CHR I T+C+LIGIKDMYAKV G      L   +F   L RQET+Q +A++  L+VV+   E    P+V+A P   + K P+  +E+
Sbjct:   88 SFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKR-----ERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRG-LSRQETHQQLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEV 401
[Close]
BLAST of S5 DRBM domain-containing protein vs. TrEMBL
Match: A0A094ZS94 (28S ribosomal protein S5, mitochondrial OS=Schistosoma haematobium OX=6185 GN=MS3_05982 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.541e-75
Identity = 164/380 (43.16%), Postives = 229/380 (60.26%), Query Frame = 1 
Query:  112 TGFHSSP-LCGIMMNTNAVLLSKQSSIFLE---NSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESG---------VTKTPDSSEEISFDRLHLDGRVFQVRKREPFY 1212
            +G   SP LC +   +   + +  S++ L       +IF     DMLWEGVTG  G +KKRARGKRRV R K+NL+ G+++G    +I+WPGLNTP +S +       G+ +EEY + L  +RN+   KK    + PL+RGWT    GG S+G P      N   FD  V+E KVV T+ ++KGRYRRF   V  GNG GL G  KAK++N  ++ + AK +A+  + S++L+EGRT+WH  Y+ + N+KIF  P   G GL CHR+IKT+C++IGIKDMYA+VEG T N Q IAR F  +L++Q+TY+D+AN L L+VV+  A+ D YP VLA P  G         V ++ DSS  I      L  R+  +  + P +
Sbjct:   33 SGLSGSPVLCPVKSQSYNFVYNAASALGLYVPCRYSTIFSDYPSDMLWEGVTGPKGGSKKRARGKRRVTRQKINLHVGQRLGFGKASIQWPGLNTPASSTI-----KKGDYNEEYFERLEMLRNKSAVKKKRMKLTPLQRGWTGKLLGGQSVGPPTP----NNPDFDCFVIESKVVATVTATKGRYRRFSVVVATGNGQGLCGIGKAKALNKLSATRRAKLRASQNIISFDLKEGRTLWHVGYVCQWNSKIFAAPLSEGAGLKCHRMIKTLCQVIGIKDMYARVEGSTNNYQAIARGFIRLLKQQKTYEDLANSLGLHVVEFAADRDMYPHVLASPACGHANDFSKNNVNESGDSSAVIHSKSYELPQRLPLIVPQNPTH 403
[Close]
BLAST of S5 DRBM domain-containing protein vs. TrEMBL
Match: A0A0R3TN25 (S5 DRBM domain-containing protein OS=Rodentolepis nana OX=102285 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.987e-75
Identity = 149/305 (48.85%), Postives = 198/305 (64.92%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVT 1122
            +IF     D++WEGVTG  G  KKRARGKRRV R K++LN G+++G N     WPGLN P+ S   + +   G+ +E Y   L E+RN+   KK    +PPL RGWT A  GG SLG     +     GFD+ VLE K V TM ++ GRYRRF + V+ GNG G+ G  KA+SV  + ++K AK +A L L S+NL+EGRT+WH  ++ E +T I+  P+  G GLVCHR IKT+C LIGIKD++AKVEG TKN   I R F  +L  QE+Y+D++NRL ++VV+   + +N P VLA P SGVT
Sbjct:   54 TIFTSLPSDVIWEGVTGPKGSTKKRARGKRRVTRPKIDLNRGQRLGGNREGYLWPGLNAPLFSKDILQKVQKGDINEAYLNKLEELRNKSAVKKKRVKLPPLLRGWTGASMGGQSLGP----LESGSPGFDTRVLELKSVSTMTATVGRYRRFSALVVAGNGQGVCGVGKARSVTMRAALKRAKNRAFLNLISFNLKEGRTLWHLGHVREWHTTIYATPKPEGYGLVCHRAIKTLCNLIGIKDLHAKVEGNTKNYLSIVRGFLRLLNEQESYEDVSNRLEMHVVEFSKDFNNVPRVLASPCSGVT 354
[Close]
BLAST of S5 DRBM domain-containing protein vs. TrEMBL
Match: A0A3P7TAD8 (S5 DRBM domain-containing protein OS=Rodentolepis nana OX=102285 GN=HNAJ_LOCUS8759 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.141e-75
Identity = 149/305 (48.85%), Postives = 198/305 (64.92%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVT 1122
            +IF     D++WEGVTG  G  KKRARGKRRV R K++LN G+++G N     WPGLN P+ S   + +   G+ +E Y   L E+RN+   KK    +PPL RGWT A  GG SLG     +     GFD+ VLE K V TM ++ GRYRRF + V+ GNG G+ G  KA+SV  + ++K AK +A L L S+NL+EGRT+WH  ++ E +T I+  P+  G GLVCHR IKT+C LIGIKD++AKVEG TKN   I R F  +L  QE+Y+D++NRL ++VV+   + +N P VLA P SGVT
Sbjct:   54 TIFTSLPSDVIWEGVTGPKGSTKKRARGKRRVTRPKIDLNRGQRLGGNREGYLWPGLNAPLFSKDILQKVQKGDINEAYLNKLEELRNKSAVKKKRVKLPPLLRGWTGASMGGQSLGP----LESGSPGFDTRVLELKSVSTMTATVGRYRRFSALVVAGNGQGVCGVGKARSVTMRAALKRAKNRAFLNLISFNLKEGRTLWHLGHVREWHTTIYATPKPEGYGLVCHRAIKTLCNLIGIKDLHAKVEGNTKNYLSIVRGFLRLLNEQESYEDVSNRLEMHVVEFSKDFNNVPRVLASPCSGVT 354
[Close]
BLAST of S5 DRBM domain-containing protein vs. TrEMBL
Match: A0A074Z0F2 (Ribosomal protein S5 domain protein OS=Opisthorchis viverrini OX=6198 GN=T265_10950 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.192e-75
Identity = 148/340 (43.53%), Postives = 210/340 (61.76%), Query Frame = 1 
Query:  118 FHSSPLCGIMMNTNAVLLSKQSSIFLENSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDS 1137
            F   P  G+  +T+    S    + +  + SIF     D LWEGVTG  G  KKRARGKRR+VR K++L+ G+++G    N++WPGLN P+ SG  +     GE +E Y + L ++RN+   KK    +PPL RGWT +   G S+G P          FD+ V+E KVV TM ++ GRYRRF   V  GNG GL G  KAK++    ++K AK++AA  L S+ L++ RT+WH  ++ E ++ IF KP   G GLVCHR+++T+C++IGIKDMYAKVEG  +N Q++ R F  +L  Q+TY D+ANR+ L+VV    + D YP VLA P+ G +  P++
Sbjct:   42 FKPPPTVGLFPHTHPE--SWIPLLTVVRTSSIFTSLPADRLWEGVTGPRGSTKKRARGKRRIVRPKIDLHRGQRLGMGKGNMEWPGLNVPLVSGSQLRIIKAGEMNEAYFQRLEKVRNQSAVKKKRIKLPPLLRGWTGSRLEGQSIGPPTP----EHPEFDTRVIEMKVVATMTATVGRYRRFSVLVATGNGRGLCGIGKAKAITLTAAIKRAKQRAAKSLISFELKDNRTLWHIGHVREWHSSIFAKPAAEGSGLVCHRLLRTLCQIIGIKDMYAKVEGSARNYQVLTRGFLRLLSEQQTYSDLANRVGLHVVAFSQDEDMYPRVLASPDPGCSVDPNT 375
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BLAST of S5 DRBM domain-containing protein vs. TrEMBL
Match: U6J9W1 (28S ribosomal protein S5 OS=Echinococcus granulosus OX=6210 GN=EGR_02819 PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 4.482e-75
Identity = 148/313 (47.28%), Postives = 203/313 (64.86%), Query Frame = 1 
Query:  187 IFLENSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTK 1125
            I + NS ++F    GD++WEGVTG  G  KKRARGKRRV R K++LN G+++G N     WPGLN P+     + +   G+ ++EY   L E+RN+   KK    +PPL RGWT A  GG SLG     +     GFD+ VLE K V TM ++ GRYRRF + V+ GNG G+ G  KA+SV  + ++K AK +A L L S+NL+E RT+WH  ++ E +T I+  P+  G GLVCHR IKT+C LIGIKDM+AKVEG TKN   I R F  +L  QE+Y+D++NRL ++VV+   + ++ P VLA P +G+T+
Sbjct:   59 IPVRNS-TVFTSLPGDVIWEGVTGPKGSTKKRARGKRRVTRPKIDLNRGQRLGGNREGYLWPGLNAPLYRESTLQKVQKGDVNQEYLNKLEELRNKSAVKKKRVKLPPLLRGWTGASMGGQSLGP----LDSGSPGFDTRVLELKAVSTMTATVGRYRRFSALVVAGNGRGVCGVGKARSVTLRGALKRAKNRAFLNLISFNLKENRTLWHLGHVREWHTTIYATPKPEGHGLVCHRAIKTLCDLIGIKDMHAKVEGNTKNYLSIVRGFLRLLNEQESYEDVSNRLGMHVVEFSKDFNSVPRVLASPRAGITQ 366
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Cavefish
Match: mrps5 (mitochondrial ribosomal protein S5 [Source:NCBI gene;Acc:111193174])

HSP 1 Score: 175.252 bits (443), Expect = 1.756e-49
Identity = 126/339 (37.17%), Postives = 181/339 (53.39%), Query Frame = 1 
Query:  160 AVLLSKQSSIFLENSRSIFIYR-SGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKP-VAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSC-VMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLH 1167
            AVL S  S  + +   S F  + + D LW GV    G   ++ RGKR   + K +LN G+ +G+      WPGLN P+        FS   ++E+ E     +R R    +  +      RGWT   +GG+SLG P     G+ ++ FDS VLE K V  M +  GR RR +SC V VGNGNG AG+A  K+ + +T+++ AK +A   L         T++H      + T + +K +  G GL CHR + T+C+LIGI+DMYAKVEG   N   I R     L +QET+Q +A+R  LNVV+   E    P+V+A+P+ G  K P+  +E+   RLH
Sbjct:   27 AVLCSPLSRAWQQTRSSSFFNKLTADELWRGVVADSGSGARKGRGKRTKRKLKKDLNIGQLVGEGRGGFLWPGLNVPLTKNGVRQSFSKRGEEEQQEVREELVRQRDEWDRKRKLRIKRERGWTGNSWGGISLGPPDPGPNGETYEDFDSRVLEVKTVFNMTARDGR-RRSISCLVAVGNGNGAAGFALGKASDRQTALRKAKNRAIHYLYYIERYNNHTIYHDIDSTFKRTTLRMKKQNEGYGLHCHRAVITICRLIGIEDMYAKVEGSV-NLLNITRALFQGLAKQETHQALADRKQLNVVEFRDEQGPLPIVVAKPQLGARKDPEQEDEVPNTRLH 363
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Sea Lamprey
Match: mrps5 (mitochondrial ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-060929-264])

HSP 1 Score: 129.413 bits (324), Expect = 2.965e-34
Identity = 97/271 (35.79%), Postives = 140/271 (51.66%), Query Frame = 1 
Query:  208 SIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKA--LLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKP-VAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRR 1011
            S F   + D LW+GV    G A ++ RGKR   + K NLN+G+ IG+      WPGLN P+     I + S   + E+ E    +L  R+  +KKK  R+     RGW+  ++GG+SLG P  +  G  ++ FDS V+E + V  M   +GR +   + V+VGN  G AG+A  K+     +++ AK  A   L         TV+       R+T I +K    G+GL CHR I TMC+LIGI+DMYAKV G      +    F  + R+
Sbjct:   19 SFFNKLTADELWKGVVANSGSAMRKGRGKRAKRKFKKNLNFGQTIGEGKGGFLWPGLNMPIRLEDGIQKPSRRSEAEQLEMQANMLLKRDEWDKKK--RFRVKTERGWSGRNWGGISLGPPDPSPNGDTYEDFDSRVIEVRNVFHMTGKEGRKKSCRALVVVGNKKGAAGFAIGKAPERTAALRKAKNMAIHYLYYIERYNDHTVYENFNTTYRHTTITVKKMPRGQGLHCHRAIITMCRLIGIEDMYAKVTGSVNLINMTKAFFLGLTRQ 287
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Yeast
Match: MRPS5 (Mitochondrial ribosomal protein of the small subunit [Source:SGD;Acc:S000000455])

HSP 1 Score: 48.521 bits (114), Expect = 1.171e-6
Identity = 34/134 (25.37%), Postives = 59/134 (44.03%), Query Frame = 1 
Query:  637 NSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALR-LESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIA 1035
             + KG+   F + V+VG+ NG+ G  + KS    +         A+R L+     E RT++          K+ ++    G GL  + VI  +C+  GIKD+  KV     +  +      A  + Q+T  ++A
Sbjct:  157 QTGKGKIASFYALVVVGDKNGMVGLGEGKSREEMSKAIFKAHWDAVRNLKEIPRYENRTIYGDIDFRYHGVKLHLRSAKPGFGLRVNHVIFEICECAGIKDLSGKVYKSRNDMNIAKGTIEAFTKAQKTLDEVA 290
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Nematostella
Match: EDO46769 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RP03])

HSP 1 Score: 68.5514 bits (166), Expect = 5.802e-13
Identity = 62/218 (28.44%), Postives = 87/218 (39.91%), Query Frame = 1 
Query:  364 KWPGLNTPVASGVDI---NRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHER--NTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAM 1002
            +W G N PV    D+    R    E D+E+                 R      RGW+   + G   G P     +    FDS V+E + V  + S  G+ R   + V+VGN NG AG+   K     ++++ A+ KA   L               Y  ER  N   F        GL CHR IK + +L+GI DM  KV G T    L+  +F  +
Sbjct:   88 QWEGFNAPVILEGDVVEKGRLPGKEDDQEFR----------------RPGQWFERGWSGTTWPGRKAGNPQRSDREVLKNFDSVVVELRRVSNVTSG-GKKRSLRALVVVGNRNGAAGFGVGKGRTPISAIRKARNKAVNYL---------------YFVERCDNRTSF--------GLSCHRAIKEIAELLGIDDMRCKVLGPTTPLSLVQAVFQGL 265
[Close]
BLAST of S5 DRBM domain-containing protein vs. Planmine SMEST
Match: SMESG000017232.1 (SMESG000017232.1)

HSP 1 Score: 862.062 bits (2226), Expect = 0.000e+0
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 1 
Query:   37 MMQFIQKSLKLGKIIPKMPTNFTFNTGFHSSPLCGIMMNTNAVLLSKQSSIFLENSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLDGRVFQVRKREPFYLNLPNRINKRAERHRYRNMAVISRSMKVMEFLADSGHLVRRSL 1341
            MMQFIQKSLKLGKIIPKMPTNFTFNTGFHSSPLCGIMMNTNAVLLSKQSSIFLENSRSIFIYRSGDMLWEGVTGAPGRAKKRARGKRRVVRNKVNLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLDGRVFQVRKREPFYLNLPNRINKRAERHRYRNMAVISRSMKVMEFLADSGHLVRRSL
Sbjct:    1 MMQFIQKSLKLGKIIPKMPTNFTFNTGFHSSPLCGIMMNTNAVLLSKQSSIFLENSRSIFIYRSGDMLWEGVTGAPGRAKKRARGKRRVVRNKVNLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLDGRVFQVRKREPFYLNLPNRINKRAERHRYRNMAVISRSMKVMEFLADSGHLVRRSL 435
[Close]
BLAST of S5 DRBM domain-containing protein vs. Planmine SMEST
Match: SMESG000017232.1 (SMESG000017232.1)

HSP 1 Score: 859.366 bits (2219), Expect = 0.000e+0
Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 1 
Query:   40 MQFIQKSLKLGKIIPKMPTNFTFNTGFHSSPLCGIMMNTNAVLLSKQSSIFLENSRSIFIYRSGDMLWEGVTGAPXXXXXXXXXXXXXXXXXXXLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLDGRVFQVRKREPFYLNLPNRINKRAERHRYRNMAVISRSMKVMEFLADSGHLVRRSL 1341
            MQFIQKSLKLGKIIPKMPTNFTFNTGFHSSPLCGIMMNTNAVLLSKQSSIFLENSRSIFIYRSGDMLWEGVTGAPGRAKKRARGKRRVVRNKVNLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLDGRVFQVRKREPFYLNLPNRINKRAERHRYRNMAVISRSMKVMEFLADSGHLVRRSL
Sbjct:    1 MQFIQKSLKLGKIIPKMPTNFTFNTGFHSSPLCGIMMNTNAVLLSKQSSIFLENSRSIFIYRSGDMLWEGVTGAPGRAKKRARGKRRVVRNKVNLNWGRKIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKKKISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTMNSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLESYNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKDMYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNYPLVLAEPESGVTKTPDSSEEISFDRLHLDGRVFQVRKREPFYLNLPNRINKRAERHRYRNMAVISRSMKVMEFLADSGHLVRRSL 434
The following BLAST results are available for this feature:
BLAST of S5 DRBM domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2
Match NameE-valueIdentityDescription
MRPS51.191e-4634.38mitochondrial ribosomal protein S5 [Source:HGNC Sy... [more]
MRPS52.226e-1030.18mitochondrial ribosomal protein S5 [Source:HGNC Sy... [more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps-54.584e-5033.42Putative 28S ribosomal protein S5, mitochondrial ... [more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mRpS54.771e-5334.92gene:FBgn0044510 transcript:FBtr0111147[more]
mRpS54.771e-5334.92gene:FBgn0044510 transcript:FBtr0111146[more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 2
Match NameE-valueIdentityDescription
mrps53.897e-5037.12mitochondrial ribosomal protein S5 [Source:ZFIN;Ac... [more]
mrps55.601e-5037.12mitochondrial ribosomal protein S5 [Source:ZFIN;Ac... [more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
aifm32.452e-4331.39apoptosis inducing factor, mitochondria associated... [more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Mrps58.263e-4435.46mitochondrial ribosomal protein S5 [Source:MGI Sym... [more]
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BLAST of S5 DRBM domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q93425|RT05_CAEEL5.831e-4933.42Putative 28S ribosomal protein S5, mitochondrial O... [more]
sp|Q2KID9|RT05_BOVIN3.672e-4835.1528S ribosomal protein S5, mitochondrial OS=Bos tau... [more]
sp|Q5REJ1|RT05_PONAB4.961e-4735.6928S ribosomal protein S5, mitochondrial OS=Pongo a... [more]
sp|A8Y3Q1|RT05_CAEBR2.650e-4634.05Putative 28S ribosomal protein S5, mitochondrial O... [more]
sp|P82675|RT05_HUMAN5.718e-4634.3828S ribosomal protein S5, mitochondrial OS=Homo sa... [more]
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BLAST of S5 DRBM domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A094ZS941.541e-7543.1628S ribosomal protein S5, mitochondrial OS=Schisto... [more]
A0A0R3TN251.987e-7548.85S5 DRBM domain-containing protein OS=Rodentolepis ... [more]
A0A3P7TAD82.141e-7548.85S5 DRBM domain-containing protein OS=Rodentolepis ... [more]
A0A074Z0F24.192e-7543.53Ribosomal protein S5 domain protein OS=Opisthorchi... [more]
U6J9W14.482e-7547.2828S ribosomal protein S5 OS=Echinococcus granulosu... [more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps51.756e-4937.17mitochondrial ribosomal protein S5 [Source:NCBI ge... [more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1
Match NameE-valueIdentityDescription
mrps52.965e-3435.79mitochondrial ribosomal protein S5 [Source:ZFIN;Ac... [more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
MRPS51.171e-625.37Mitochondrial ribosomal protein of the small subun... [more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO467695.802e-1328.44Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of S5 DRBM domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of S5 DRBM domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000017232.10.000e+0100.00SMESG000017232.1[more]
SMESG000017232.10.000e+0100.00SMESG000017232.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029457 ID=SMED30029457|Name=S5 DRBM domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1506bp
CTTATATGATTGTTATTCAATCCTTTTTGAATAAAAATGATGCAATTTAT
ACAGAAGTCATTAAAATTAGGAAAAATTATTCCCAAAATGCCGACAAACT
TCACATTTAATACAGGATTTCATTCTAGTCCATTATGTGGAATAATGATG
AATACAAATGCTGTACTGTTATCAAAGCAATCATCTATATTTTTGGAAAA
TTCTCGATCAATTTTTATATATCGTAGCGGCGACATGCTATGGGAAGGAG
TAACCGGTGCTCCGGGACGAGCCAAGAAAAGAGCTCGTGGTAAAAGAAGA
GTTGTTAGGAACAAAGTTAATCTTAATTGGGGCCGCAAAATTGGTGATAA
TATATTGAATATCAAATGGCCTGGGCTGAATACTCCAGTTGCTAGCGGGG
TGGATATAAATCGATTTTCGACCGGGGAAAAGGATGAGGAATACGAGAAG
GCGTTGTTGGAAATGCGAAACCGACAAAATAAAAAGAAAATCAGCAGATA
TGTTCCGCCGTTGCGACGGGGTTGGACAAGCGCGCATTTCGGTGGTTTGA
GCTTAGGCAAACCGGTGGCAGTTGTCGGGCAAAATTGGGACGGGTTCGAC
TCGAGCGTGCTCGAATTCAAGGTTGTCTGTACGATGAATTCCAGCAAGGG
CCGCTACCGGCGGTTTCTCTCCTGCGTGATGGTTGGCAATGGCAACGGAC
TGGCTGGATACGCCAAGGCAAAATCGGTGAATGGCAAAACATCAATGAAG
GTAGCCAAGCGCAAGGCAGCTTTGCGCCTTGAAAGTTACAATCTACGCGA
AGGGCGAACAGTCTGGCATCCGGATTACATGCACGAGAGGAACACAAAGA
TCTTCATTAAACCTCGAATGAACGGCGAGGGCTTGGTGTGCCACCGAGTG
ATCAAGACCATGTGCAAACTGATCGGCATCAAGGACATGTATGCGAAAGT
AGAGGGCTGCACCAAGAACAATCAATTGATTGCCAGGATATTCACGGCCA
TGTTGCGCCGTCAGGAAACCTATCAGGATATCGCCAATCGGCTCTCGTTG
AATGTGGTGCAGAACTGCGCTGAGTCTGACAATTACCCGCTTGTGCTGGC
GGAACCTGAATCCGGCGTCACGAAAACTCCTGACAGTAGCGAGGAAATCA
GTTTCGATCGATTGCATCTCGATGGCAGAGTGTTCCAGGTGCGCAAGCGC
GAGCCATTCTATCTGAACCTGCCGAACCGGATCAATAAACGTGCAGAGCG
ACACAGATACCGCAACATGGCAGTGATTAGTCGCTCCATGAAGGTGATGG
AGTTCCTGGCGGATAGCGGGCATCTCGTTAGGAGATCTCTGGGTGGCGGT
GGTGACGGCGCAGCCGCCGCTGCTGCTAGTAAATCATGATGATGAGTCTT
TGTTTATTGCTGCTGTTTGATTGGGTGATTGATTTGGTTGGTGCCACTGA
CTGCCCGTTCACTATTGGCACTTTGATTGACATATTGATTGATTGATTGA
TTGATT
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protein sequence of SMED30029457-orf-1

>SMED30029457-orf-1 ID=SMED30029457-orf-1|Name=SMED30029457-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=451bp
MMQFIQKSLKLGKIIPKMPTNFTFNTGFHSSPLCGIMMNTNAVLLSKQSS
IFLENSRSIFIYRSGDMLWEGVTGAPGRAKKRARGKRRVVRNKVNLNWGR
KIGDNILNIKWPGLNTPVASGVDINRFSTGEKDEEYEKALLEMRNRQNKK
KISRYVPPLRRGWTSAHFGGLSLGKPVAVVGQNWDGFDSSVLEFKVVCTM
NSSKGRYRRFLSCVMVGNGNGLAGYAKAKSVNGKTSMKVAKRKAALRLES
YNLREGRTVWHPDYMHERNTKIFIKPRMNGEGLVCHRVIKTMCKLIGIKD
MYAKVEGCTKNNQLIARIFTAMLRRQETYQDIANRLSLNVVQNCAESDNY
PLVLAEPESGVTKTPDSSEEISFDRLHLDGRVFQVRKREPFYLNLPNRIN
KRAERHRYRNMAVISRSMKVMEFLADSGHLVRRSLGGGGDGAAAAAASKS
*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: cellular component
TermDefinition
GO:1990904ribonucleoprotein complex
GO:0005840ribosome
GO:0030529intracellular ribonucleoprotein complex
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0000101muscle cell
PLANA:0002032epidermal cell
PLANA:0002109X1 cell
PLANA:0002111X2 cell
PLANA:0003116parenchymal cell
Vocabulary: INTERPRO
TermDefinition
IPR000851Ribosomal_S5
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR014720dsRBD_dom
IPR005324Ribosomal_S5_C
IPR013810Ribosomal_S5_N
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: molecular function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: biological process
TermDefinition
GO:0006412translation
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.30.160.20coord: 178..248
e-value: 2.6E-6
score: 29.3
NoneNo IPR availablePANTHERPTHR13718:SF9128S RIBOSOMAL PROTEIN S5, MITOCHONDRIALcoord: 45..371
NoneNo IPR availableSUPERFAMILYSSF54768dsRNA-binding domain-likecoord: 183..248
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 268..334
e-value: 2.1E-15
score: 55.9
IPR013810Ribosomal protein S5, N-terminalPFAMPF00333Ribosomal_S5coord: 188..248
e-value: 2.9E-10
score: 40.0
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 253..344
e-value: 1.1E-12
score: 49.3
IPR000851Ribosomal protein S5PANTHERPTHR13718RIBOSOMAL S SUBUNITcoord: 45..371
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILYSSF54211Ribosomal protein S5 domain 2-likecoord: 257..335