Thyroid receptor-interacting protein 11

Overview
NameThyroid receptor-interacting protein 11
Smed IDSMED30029318
Length (bp)1523
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Thyroid receptor-interacting protein 11 (SMED30029318) t-SNE clustered cells

Violin plots show distribution of expression levels for Thyroid receptor-interacting protein 11 (SMED30029318) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Thyroid receptor-interacting protein 11 (SMED30029318) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Thyroid receptor-interacting protein 11 (SMED30029318) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30029318

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 10

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30029318SMESG000037100.1 SmedASXL_006369SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30029318SMESG000037100.1 dd_Smed_v4_3407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30029318SMESG000037100.1 dd_Smed_v4_3407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30029318SMESG000037100.1 dd_Smed_v4_3407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30029318SMESG000037100.1 dd_Smed_v4_3407_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029318SMESG000037101.1 SMESG000037100.1 Contig21145newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029318SMESG000037101.1 SMESG000037100.1 Contig21145uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029318SMESG000037100.1 Contig10465newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029318SMESG000037100.1 Contig10465uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
epidermisSMED30029318SMESG000037100.1 dd_Smed_v4_3407_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Thyroid receptor-interacting protein 11 vs. TrEMBL
Match: A0A2R2MLR4 (thyroid receptor-interacting protein 11 isoform X12 OS=Lingula unguis OX=7574 GN=LOC106159831 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.429e-15
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 1 
Query: 1087 EDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSD----QTDGSAMKC---------IESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWN 1413
            EDM +E +++L+ M+R+KE EIEALK KN +L  ++Q+   +    Q   + M           +  ++ E+E+LSK+LA YQ++REQ+I+AL  KH+ES+ YH EIQRL A ++ E  K +
Sbjct: 1222 EDMTREAIQNLSHMVRNKEMEIEALKQKNETLLMVLQESSPNSPAPQKGATVMAGGGANTNSVQVGLLMQERENLSKQLAAYQQDREQIIAALTQKHQESVAYHTEIQRLTACLSTETQKMD 1343
[Close]
BLAST of Thyroid receptor-interacting protein 11 vs. TrEMBL
Match: A0A2R2MLR6 (thyroid receptor-interacting protein 11 isoform X11 OS=Lingula unguis OX=7574 GN=LOC106159831 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.761e-15
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 1 
Query: 1087 EDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSD----QTDGSAMKC---------IESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWN 1413
            EDM +E +++L+ M+R+KE EIEALK KN +L  ++Q+   +    Q   + M           +  ++ E+E+LSK+LA YQ++REQ+I+AL  KH+ES+ YH EIQRL A ++ E  K +
Sbjct: 1370 EDMTREAIQNLSHMVRNKEMEIEALKQKNETLLMVLQESSPNSPAPQKGATVMAGGGANTNSVQVGLLMQERENLSKQLAAYQQDREQIIAALTQKHQESVAYHTEIQRLTACLSTETQKMD 1491
[Close]
BLAST of Thyroid receptor-interacting protein 11 vs. TrEMBL
Match: A0A2R2MLQ9 (thyroid receptor-interacting protein 11 isoform X8 OS=Lingula unguis OX=7574 GN=LOC106159831 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.942e-15
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 1 
Query: 1087 EDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSD----QTDGSAMKC---------IESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWN 1413
            EDM +E +++L+ M+R+KE EIEALK KN +L  ++Q+   +    Q   + M           +  ++ E+E+LSK+LA YQ++REQ+I+AL  KH+ES+ YH EIQRL A ++ E  K +
Sbjct: 1504 EDMTREAIQNLSHMVRNKEMEIEALKQKNETLLMVLQESSPNSPAPQKGATVMAGGGANTNSVQVGLLMQERENLSKQLAAYQQDREQIIAALTQKHQESVAYHTEIQRLTACLSTETQKMD 1625
[Close]
BLAST of Thyroid receptor-interacting protein 11 vs. TrEMBL
Match: A0A2R2MLR3 (thyroid receptor-interacting protein 11 isoform X7 OS=Lingula unguis OX=7574 GN=LOC106159831 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.972e-15
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 1 
Query: 1087 EDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSD----QTDGSAMKC---------IESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWN 1413
            EDM +E +++L+ M+R+KE EIEALK KN +L  ++Q+   +    Q   + M           +  ++ E+E+LSK+LA YQ++REQ+I+AL  KH+ES+ YH EIQRL A ++ E  K +
Sbjct: 1521 EDMTREAIQNLSHMVRNKEMEIEALKQKNETLLMVLQESSPNSPAPQKGATVMAGGGANTNSVQVGLLMQERENLSKQLAAYQQDREQIIAALTQKHQESVAYHTEIQRLTACLSTETQKMD 1642
[Close]
BLAST of Thyroid receptor-interacting protein 11 vs. TrEMBL
Match: A0A2R2MLN5 (thyroid receptor-interacting protein 11 isoform X6 OS=Lingula unguis OX=7574 GN=LOC106159831 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.161e-15
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = 1 
Query: 1087 EDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSD----QTDGSAMKC---------IESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWN 1413
            EDM +E +++L+ M+R+KE EIEALK KN +L  ++Q+   +    Q   + M           +  ++ E+E+LSK+LA YQ++REQ+I+AL  KH+ES+ YH EIQRL A ++ E  K +
Sbjct: 1523 EDMTREAIQNLSHMVRNKEMEIEALKQKNETLLMVLQESSPNSPAPQKGATVMAGGGANTNSVQVGLLMQERENLSKQLAAYQQDREQIIAALTQKHQESVAYHTEIQRLTACLSTETQKMD 1644
[Close]
BLAST of Thyroid receptor-interacting protein 11 vs. Planmine SMEST
Match: SMESG000037100.1 (SMESG000037100.1)

HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 488/511 (95.50%), Postives = 490/511 (95.89%), Query Frame = 1 
Query:   22 NDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVSQCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---NLTMDSDDILEHVETFNQEKDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAELESVRTALEKHGXXXXXXXXXXXXXXXXXXXKESMITCLNEELTMLSVIDSDDLHAXXXXXXXXXXXXHGSIGTDGFSQTDPVNDPSTESSIIGLERQIGCLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLAMAXXXXXXXXX--------MEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWNXXXXXXXXXXXXXXXDAIRSVPGADQHLVTAPDQHL 1521
            NDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVSQCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRQLAALSAVSRQQQQQQ   +P+A   A    A   NLTMDSDDILEHVETFNQEKDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAELESVRTALEKHGENEQALRRQLQELQETLQQKESMITCLNEELTMLSVIDSDDLHAQQPLPQQQPQSQHGSIGTDGFSQTDPVNDPSTESSIIGLERQIGCLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLAMATGTGTGTGT        MEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWNEMDQLRQQQMQQRDEDAIRSVPGADQHLVTAPDQHL
Sbjct:  603 NDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVSQCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRQLAALSAVSRQQQQQQQQQSPSAPAAAVIATAPAANLTMDSDDILEHVETFNQEKDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAELESVRTALEKHGENEQALRRQLQELQETLQQKESMITCLNEELTMLSVIDSDDLHAQQPLPQQQPQSQHGSIGTDGFSQTDPVNDPSTESSIIGLERQIGCLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLAMATGTGTGTGTGTGTGTGTMEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWNEMDQLRQQQMQQRDEDAIRSVPGADQHLVTAPDQHL 1113
[Close]
BLAST of Thyroid receptor-interacting protein 11 vs. Planmine SMEST
Match: SMESG000037100.1 (SMESG000037100.1)

HSP 1 Score: 800.045 bits (2065), Expect = 0.000e+0
Identity = 488/511 (95.50%), Postives = 490/511 (95.89%), Query Frame = 1 
Query:   22 NDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVSQCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---NLTMDSDDILEHVETFNQEKDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAELESVRTALEKHGXXXXXXXXXXXXXXXXXXXKESMITCLNEELTMLSVIDSDDLHAXXXXXXXXXXXXHGSIGTDGFSQTDPVNDPSTESSIIGLERQIGCLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLAMAXXXXXXXXX--------MEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWNXXXXXXXXXXXXXXXDAIRSVPGADQHLVTAPDQHL 1521
            NDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVSQCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRQLAALSAVSRQQQQQQ   +P+A   A    A   NLTMDSDDILEHVETFNQEKDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAELESVRTALEKHGENEQALRRQLQELQETLQQKESMITCLNEELTMLSVIDSDDLHAQQPLPQQQPQSQHGSIGTDGFSQTDPVNDPSTESSIIGLERQIGCLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLAMATGTGTGTGT        MEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWNEMDQLRQQQMQQRDEDAIRSVPGADQHLVTAPDQHL
Sbjct:  604 NDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVSQCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRQLAALSAVSRQQQQQQQQQSPSAPAAAVIATAPAANLTMDSDDILEHVETFNQEKDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAELESVRTALEKHGENEQALRRQLQELQETLQQKESMITCLNEELTMLSVIDSDDLHAQQPLPQQQPQSQHGSIGTDGFSQTDPVNDPSTESSIIGLERQIGCLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLAMATGTGTGTGTGTGTGTGTMEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWNEMDQLRQQQMQQRDEDAIRSVPGADQHLVTAPDQHL 1114
[Close]
BLAST of Thyroid receptor-interacting protein 11 vs. Planmine SMEST
Match: SMESG000037100.1 (SMESG000037100.1)

HSP 1 Score: 798.89 bits (2062), Expect = 0.000e+0
Identity = 488/511 (95.50%), Postives = 490/511 (95.89%), Query Frame = 1 
Query:   22 NDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVSQCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---NLTMDSDDILEHVETFNQEKDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAELESVRTALEKHGXXXXXXXXXXXXXXXXXXXKESMITCLNEELTMLSVIDSDDLHAXXXXXXXXXXXXHGSIGTDGFSQTDPVNDPSTESSIIGLERQIGCLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLAMAXXXXXXXXX--------MEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWNXXXXXXXXXXXXXXXDAIRSVPGADQHLVTAPDQHL 1521
            NDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVSQCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRQLAALSAVSRQQQQQQ   +P+A   A    A   NLTMDSDDILEHVETFNQEKDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAELESVRTALEKHGENEQALRRQLQELQETLQQKESMITCLNEELTMLSVIDSDDLHAQQPLPQQQPQSQHGSIGTDGFSQTDPVNDPSTESSIIGLERQIGCLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLAMATGTGTGTGT        MEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWNEMDQLRQQQMQQRDEDAIRSVPGADQHLVTAPDQHL
Sbjct:  609 NDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVSQCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRQLAALSAVSRQQQQQQQQQSPSAPAAAVIATAPAANLTMDSDDILEHVETFNQEKDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAELESVRTALEKHGENEQALRRQLQELQETLQQKESMITCLNEELTMLSVIDSDDLHAQQPLPQQQPQSQHGSIGTDGFSQTDPVNDPSTESSIIGLERQIGCLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLAMATGTGTGTGTGTGTGTGTMEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQKFGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESLNYHGEIQRLIAYINVEQSKWNEMDQLRQQQMQQRDEDAIRSVPGADQHLVTAPDQHL 1119
The following BLAST results are available for this feature:
BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2R2MLR42.429e-1540.98thyroid receptor-interacting protein 11 isoform X1... [more]
A0A2R2MLR62.761e-1540.98thyroid receptor-interacting protein 11 isoform X1... [more]
A0A2R2MLQ92.942e-1540.98thyroid receptor-interacting protein 11 isoform X8... [more]
A0A2R2MLR32.972e-1540.98thyroid receptor-interacting protein 11 isoform X7... [more]
A0A2R2MLN53.161e-1540.98thyroid receptor-interacting protein 11 isoform X6... [more]
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Thyroid receptor-interacting protein 11 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 3
Match NameE-valueIdentityDescription
SMESG000037100.10.000e+095.50SMESG000037100.1[more]
SMESG000037100.10.000e+095.50SMESG000037100.1[more]
SMESG000037100.10.000e+095.50SMESG000037100.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029318 ID=SMED30029318|Name=Thyroid receptor-interacting protein 11|organism=Schmidtea mediterranea sexual|type=transcript|length=1523bp
ATGAGTGCCAGTATCAGTGCCAATGACCGACCACTCGACACCATGGCAAT
CCTGGCAACTATCAAGCACAGTTTCACAGAGATGAAGGAGACCTGCTCGG
TGCACAATTACATCGAGCAGGAAAACAAGTCCCTACAGCAATTGGTATCG
CAATGCCAGCTGACAATCGCCAATTTGGACAGGGAGAAATCTGATTTGCT
GGCAAAGAATACAGAATTGGATGAGCAGCTGCTGGATTTCTCTATAACTG
TGGCCCGATACGAGGGCTTGGAAACGGTATGCGATAGGTATCAGCGGCAG
TTGGCAGCCCTGTCGGCGGTATCTAGGCAACAGCAGCAGCAGCAATCACC
CTCGGCACCAGCGGCGGCAGTAATTGCCACTGCACCCGCTGCTAATCTCA
CCATGGATTCCGATGACATCCTGGAACACGTAGAAACATTCAACCAGGAA
AAGGACGAGTGCATTCAGGCGCTCGAATCCAAAATCATCAGCCTGCAGAA
TCTCTGCGAGGAAAAGGACGACGACATCGCCGAGTTGACTCAAAGGGAGC
GCGATATTGTGTTCGAGTATGATTCACTGATCGAGGTGCTCAAGGCCGAG
TTGGAGTCGGTGCGGACGGCCCTGGAGAAGCACGGGGAGAACGAGCAGGC
GCTGCGCAGGCAGCTCCAGGAACTGCAGGAAACTTTGCAGCAGAAGGAAT
CGATGATCACATGTTTGAATGAGGAGCTGACAATGTTATCGGTAATTGAC
AGCGATGATCTACATGCCCAGCAACCGCTACCGCAACAGCAACCGCAATC
GCAACACGGCAGCATTGGCACCGATGGATTCTCACAGACAGATCCCGTTA
ACGATCCATCAACGGAATCATCGATTATCGGTCTGGAACGGCAGATTGGC
TGTCTGCTCACAGAAAAGGAACGCCTGGAACAAGTGCTAGAAGCACAGGC
TAACTCCCTCGGACAATACGAAGTAAAGGTCAGCAAGTTGCAATCGGAAC
TGTCCCGAGTGTCTAATCAATCCGGTGATCAATCACAATCATCGCTGGCA
ATGGCAACTGGAACCGGAACTGGAACCGGCACAATGGAGGACATGGCCAA
GGAGACGCTGCGCCATCTGGCACAAATGATACGTGACAAAGAATGGGAAA
TAGAAGCGCTTAAATCAAAAAACAGCAGCCTGTGTGAAATCATCCAGAAA
TTCGGGAGCGACCAAACAGATGGCTCCGCAATGAAATGCATTGAATCCGT
GCTTAATGAGAAGGAAAGCCTGTCCAAGGAGCTTGCCTGGTACCAGGAGA
ACCGTGAGCAGCTGATATCAGCATTGAATTTGAAGCATAAAGAGAGCCTG
AATTACCATGGAGAGATCCAGAGATTGATTGCCTATATAAATGTGGAGCA
GAGCAAATGGAATGAAATGGACCAATTGCGACAGCAGCAAATGCAACAGC
GTGATGAGGATGCCATTAGATCAGTGCCGGGAGCTGATCAGCACCTAGTA
ACGGCACCTGATCAGCACCTAGC
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protein sequence of SMED30029318-orf-1

>SMED30029318-orf-1 ID=SMED30029318-orf-1|Name=SMED30029318-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=507bp
MSASISANDRPLDTMAILATIKHSFTEMKETCSVHNYIEQENKSLQQLVS
QCQLTIANLDREKSDLLAKNTELDEQLLDFSITVARYEGLETVCDRYQRQ
LAALSAVSRQQQQQQSPSAPAAAVIATAPAANLTMDSDDILEHVETFNQE
KDECIQALESKIISLQNLCEEKDDDIAELTQRERDIVFEYDSLIEVLKAE
LESVRTALEKHGENEQALRRQLQELQETLQQKESMITCLNEELTMLSVID
SDDLHAQQPLPQQQPQSQHGSIGTDGFSQTDPVNDPSTESSIIGLERQIG
CLLTEKERLEQVLEAQANSLGQYEVKVSKLQSELSRVSNQSGDQSQSSLA
MATGTGTGTGTMEDMAKETLRHLAQMIRDKEWEIEALKSKNSSLCEIIQK
FGSDQTDGSAMKCIESVLNEKESLSKELAWYQENREQLISALNLKHKESL
NYHGEIQRLIAYINVEQSKWNEMDQLRQQQMQQRDEDAIRSVPGADQHLV
TAPDQHL
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0002032epidermal cell
PLANA:0002111X2 cell
Vocabulary: biological process
TermDefinition
GO:0000042protein targeting to Golgi
Vocabulary: cellular component
TermDefinition
GO:0005622intracellular
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 381..401
NoneNo IPR availableCOILSCoilCoilcoord: 42..76
NoneNo IPR availableCOILSCoilCoilcoord: 87..114
NoneNo IPR availableCOILSCoilCoilcoord: 197..245
NoneNo IPR availableCOILSCoilCoilcoord: 158..185
NoneNo IPR availableCOILSCoilCoilcoord: 425..452
NoneNo IPR availableCOILSCoilCoilcoord: 309..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 339..364