SMED30029314

Overview


Name	SMED30029314
Smed ID	SMED30029314
Length (bp)	3153

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of SMED30029314 (SMED30029314) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30029314 (SMED30029314) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30029314 (SMED30029314) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30029314 (SMED30029314) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30029314

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30029314	SMESG000001359.1	SmedASXL_013894	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30029314	SMESG000001359.1	SmedASXL_013894	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
zeta neoblast	SMED30029314	SMESG000001359.1	dd_Smed_v4_29713_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Alignments

SMED30029314 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.004215:12088..15264 +	13315
v31.005307:41200..44056 -	13051

Homology

[Close]

BLAST of SMED30029314 vs. Ensembl Human
Match: HSPA8 (heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241])

HSP 1 Score: 62.003 bits (149), Expect = 2.156e-10
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = -1

Query:  700 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYRVYKIISVNVK 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F  K++    V  ++   +K
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFETKSFYPEEVSSMVLTKMK 87

[Close]

BLAST of SMED30029314 vs. Ensembl Human
Match: HSPA8 (heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241])

HSP 1 Score: 58.9214 bits (141), Expect = 2.528e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Human
Match: HSPA8 (heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241])

HSP 1 Score: 58.9214 bits (141), Expect = 3.129e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Human
Match: HSPA8 (heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241])

HSP 1 Score: 58.9214 bits (141), Expect = 3.187e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Human
Match: HSPA8 (heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241])

HSP 1 Score: 58.9214 bits (141), Expect = 3.496e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Celegans
Match: hsp-70 (Heat Shock Protein [Source:UniProtKB/TrEMBL;Acc:O45246])

HSP 1 Score: 60.077 bits (144), Expect = 6.951e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VG++Q+ K+++L  ++   TTPSYV FTD ++L+ DAAKD A +NP NT+F  K     R
Sbjct:   18 VGIYQNGKVEILANSEGNKTTPSYVAFTDTERLVGDAAKDQAARNPENTVFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Ensembl Celegans
Match: F44E5.5 (pep chromosome:WBcel235:II:11759681:11761808:1 gene:WBGene00009692.1 transcript:F44E5.5.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F44E5.5)

HSP 1 Score: 60.077 bits (144), Expect = 7.587e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VG++Q+ K+++L  ++   TTPSYV FTD ++L+ DAAKD A +NP NT+F  K     R
Sbjct:   18 VGIYQNGKVEILANSEGNKTTPSYVAFTDTERLVGDAAKDQAARNPENTVFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Ensembl Celegans
Match: F44E5.5 (pep chromosome:WBcel235:II:11759640:11761853:1 gene:WBGene00009692.1 transcript:F44E5.5.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F44E5.5)

HSP 1 Score: 60.077 bits (144), Expect = 7.587e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VG++Q+ K+++L  ++   TTPSYV FTD ++L+ DAAKD A +NP NT+F  K     R
Sbjct:   18 VGIYQNGKVEILANSEGNKTTPSYVAFTDTERLVGDAAKDQAARNPENTVFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Ensembl Celegans
Match: F44E5.4 (pep chromosome:WBcel235:II:11757106:11759323:-1 gene:WBGene00009691.1 transcript:F44E5.4.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:F44E5.4)

HSP 1 Score: 60.077 bits (144), Expect = 7.587e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VG++Q+ K+++L  ++   TTPSYV FTD ++L+ DAAKD A +NP NT+F  K     R
Sbjct:   18 VGIYQNGKVEILANSEGNKTTPSYVAFTDTERLVGDAAKDQAARNPENTVFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Ensembl Celegans
Match: hsp-1 (Heat shock 70 kDa protein A [Source:UniProtKB/Swiss-Prot;Acc:P09446])

HSP 1 Score: 56.6102 bits (135), Expect = 8.434e-8
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVF H K++++  ++   TTPSYV FTD ++LI DAAK+    NP+NT+F
Sbjct:   18 VGVFMHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Fly
Match: Hsc70-1 (gene:FBgn0001216 transcript:FBtr0075762)

HSP 1 Score: 59.6918 bits (143), Expect = 1.362e-8
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FT+ ++LI DAAK+    NPNNTIF  K     R
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTESERLIGDAAKNQVAMNPNNTIFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Ensembl Fly
Match: Hsc70-4 (gene:FBgn0266599 transcript:FBtr0083059)

HSP 1 Score: 56.9954 bits (136), Expect = 7.606e-8
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP  TIF
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTQTIF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Fly
Match: Hsc70-4 (gene:FBgn0266599 transcript:FBtr0337053)

HSP 1 Score: 56.9954 bits (136), Expect = 7.606e-8
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP  TIF
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTQTIF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Fly
Match: Hsc70-4 (gene:FBgn0266599 transcript:FBtr0083058)

HSP 1 Score: 56.9954 bits (136), Expect = 7.606e-8
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP  TIF
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTQTIF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Fly
Match: Hsc70-4 (gene:FBgn0266599 transcript:FBtr0083060)

HSP 1 Score: 56.9954 bits (136), Expect = 7.606e-8
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP  TIF
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTQTIF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Zebrafish
Match: hsp70.1 (heat shock cognate 70-kd protein, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-91])

HSP 1 Score: 61.6178 bits (148), Expect = 1.559e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 70

[Close]

BLAST of SMED30029314 vs. Ensembl Zebrafish
Match: hsp70.2 (heat shock cognate 70-kd protein, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-110405-1])

HSP 1 Score: 61.6178 bits (148), Expect = 1.559e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 70

[Close]

BLAST of SMED30029314 vs. Ensembl Zebrafish
Match: hspa8 (heat shock protein 8 [Source:NCBI gene;Acc:573376])

HSP 1 Score: 58.9214 bits (141), Expect = 2.223e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Zebrafish
Match: hspa1b (heat shock protein family A (Hsp70) member 1B [Source:ZFIN;Acc:ZDB-GENE-060503-867])

HSP 1 Score: 61.6178 bits (148), Expect = 4.589e-9
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNTIF
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Zebrafish
Match: hsp70.3 (heat shock cognate 70-kd protein, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-110713-1])

HSP 1 Score: 61.2326 bits (147), Expect = 5.062e-9
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F  K     R
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVFDAKRLIGRR 79

[Close]

BLAST of SMED30029314 vs. Ensembl Xenopus
Match: wdr26 (WD repeat domain 26 [Source:Xenbase;Acc:XB-GENE-993726])

HSP 1 Score: 58.9214 bits (141), Expect = 3.823e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F  K     R
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Ensembl Xenopus
Match: wdr26 (WD repeat domain 26 [Source:Xenbase;Acc:XB-GENE-993726])

HSP 1 Score: 58.9214 bits (141), Expect = 3.949e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F  K     R
Sbjct:   21 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 80

[Close]

BLAST of SMED30029314 vs. Ensembl Xenopus
Match: ENSXETT00000032295.1 (heat shock protein family A (Hsp70) member 1A [Source:NCBI gene;Acc:100488052])

HSP 1 Score: 58.9214 bits (141), Expect = 4.261e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F  K     R
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Ensembl Xenopus
Match: wdr26 (WD repeat domain 26 [Source:Xenbase;Acc:XB-GENE-993726])

HSP 1 Score: 58.9214 bits (141), Expect = 4.320e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F  K     R
Sbjct:   16 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 75

[Close]

BLAST of SMED30029314 vs. Ensembl Xenopus
Match: wdr26 (WD repeat domain 26 [Source:Xenbase;Acc:XB-GENE-993726])

HSP 1 Score: 58.9214 bits (141), Expect = 4.346e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F  K     R
Sbjct:   23 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 82

[Close]

BLAST of SMED30029314 vs. Ensembl Mouse
Match: Hspa8 (heat shock protein 8 [Source:MGI Symbol;Acc:MGI:105384])

HSP 1 Score: 56.6102 bits (135), Expect = 3.209e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Mouse
Match: Hspa2 (heat shock protein 2 [Source:MGI Symbol;Acc:MGI:96243])

HSP 1 Score: 59.3066 bits (142), Expect = 2.023e-8
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NTIF
Sbjct:   19 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIF 69

[Close]

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NTIF
Sbjct:   19 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIF 69

[Close]

BLAST of SMED30029314 vs. Ensembl Mouse
Match: Hspa1l (heat shock protein 1-like [Source:MGI Symbol;Acc:MGI:96231])

HSP 1 Score: 58.9214 bits (141), Expect = 3.180e-8
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVF 70

[Close]

BLAST of SMED30029314 vs. Ensembl Mouse
Match: Hspa8 (heat shock protein 8 [Source:MGI Symbol;Acc:MGI:105384])

HSP 1 Score: 58.9214 bits (141), Expect = 3.305e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP NT+F  K     R
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. UniProt/SwissProt
Match: sp|P02826|HSP7A_DROSI (Heat shock 70 kDa protein cognate 1 (Fragments) OS=Drosophila simulans OX=7240 GN=Hsc70-1 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.886e-8
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FT+ ++LI DAAK+    NPNNTIF
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTESERLIGDAAKNQVAMNPNNTIF 68

[Close]

BLAST of SMED30029314 vs. UniProt/SwissProt
Match: sp|Q91233|HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tshawytscha OX=74940 GN=hsp70 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.203e-8
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 70

[Close]

BLAST of SMED30029314 vs. UniProt/SwissProt
Match: sp|Q9U639|HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta OX=7130 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.496e-8
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD  +LI DAAK+    NPNNTIF
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTDRLIGDAAKNQVAMNPNNTIF 68

[Close]

BLAST of SMED30029314 vs. UniProt/SwissProt
Match: sp|Q04967|HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa OX=9823 GN=HSPA6 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.014e-7
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH ++++L  ++   TTPSYV FTD ++L+ DAAK  A  NP NT+F
Sbjct:   20 VGVFQHGRVEILANDQGNRTTPSYVAFTDTERLVGDAAKSQAALNPQNTVF 70

[Close]

BLAST of SMED30029314 vs. UniProt/SwissProt
Match: sp|P29843|HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster OX=7227 GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.366e-7
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FT+ ++LI DAAK+    NPNNTIF  K     R
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTESERLIGDAAKNQVAMNPNNTIFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. TrEMBL
Match: A0A3L6DSK2 (Heat shock protein OS=Zea mays OX=4577 GN=HSP70_1 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.602e-8
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGV+QHE+++++  ++   TTPSYV FTDL+QLI DAAK+    NP NT+F
Sbjct:   31 VGVWQHERVEIIANDQGNRTTPSYVAFTDLEQLIGDAAKNQVAMNPTNTVF 81

[Close]

BLAST of SMED30029314 vs. TrEMBL
Match: A0A2A4AYR6 (Molecular chaperone DnaK (Fragment) OS=Pseudomonas pelagia OX=553151 GN=CO192_00790 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.315e-8
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNTIF
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIF 68

[Close]

BLAST of SMED30029314 vs. TrEMBL
Match: A0A1B6E138 (Uncharacterized protein (Fragment) OS=Clastoptera arizonana OX=38151 GN=g.24313 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.036e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNTIF
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIF 68

[Close]

BLAST of SMED30029314 vs. TrEMBL
Match: G8G3P2 (Heat shock protein (Fragment) OS=Bactericera cockerelli OX=290155 GN=HSP PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.509e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNTIF
Sbjct:    3 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIF 53

[Close]

BLAST of SMED30029314 vs. TrEMBL
Match: A0A3B1JZ85 (Uncharacterized protein OS=Astyanax mexicanus OX=7994 PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.573e-7
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 70

[Close]

BLAST of SMED30029314 vs. Ensembl Cavefish
Match: ENSAMXT00000032722.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001455.1:155723:156505:1 gene:ENSAMXG00000042801.1 transcript:ENSAMXT00000032722.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 62.3882 bits (150), Expect = 5.957e-11
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 70

[Close]

BLAST of SMED30029314 vs. Ensembl Cavefish
Match: hspa1b (heat shock protein family A (Hsp70) member 1B [Source:ZFIN;Acc:ZDB-GENE-060503-867])

HSP 1 Score: 61.6178 bits (148), Expect = 3.391e-9
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNTIF  K     R
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Ensembl Cavefish
Match: ENSAMXT00000055474.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001455.1:150188:156169:-1 gene:ENSAMXG00000043809.1 transcript:ENSAMXT00000055474.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 61.2326 bits (147), Expect = 4.600e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 70

[Close]

BLAST of SMED30029314 vs. Ensembl Cavefish
Match: ENSAMXT00000031477.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02001455.1:148482:152871:-1 gene:ENSAMXG00000043809.1 transcript:ENSAMXT00000031477.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 61.2326 bits (147), Expect = 4.600e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 70

[Close]

BLAST of SMED30029314 vs. Ensembl Cavefish
Match: ENSAMXT00000037064.1 (heat shock 70 kDa protein [Source:NCBI gene;Acc:111193176])

HSP 1 Score: 61.2326 bits (147), Expect = 5.224e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 70

[Close]

BLAST of SMED30029314 vs. Ensembl Yeast
Match: SSA1 (ATPase involved in protein folding and NLS-directed nuclear transport; member of HSP70 family; required for ubiquitin-dependent degradation of short-lived proteins; forms chaperone complex with Ydj1p; localized to nucleus, cytoplasm, cell wall; 98% identical to paralog Ssa2p with different functional specificity in propagation of yeast [URE3] prions, vacuolar-mediated degradations of gluconeogenesis enzymes; general targeting factor of Hsp104p to prion fibrils [Source:SGD;Acc:S000000004])

HSP 1 Score: 50.0618 bits (118), Expect = 1.718e-6
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = -1

Query:  700 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF-----INKNYRNYRV--------YKIISVNVK 909
            V  F ++++ ++  ++   TTPS+V FTD ++LI DAAK+ A  NP+NT+F     I +N+ +  V        +K+I V+ K
Sbjct:   16 VAHFANDRVDIIANDQGNRTTPSFVAFTDTERLIGDAAKNQAAMNPSNTVFDAKRLIGRNFNDPEVQADMKHFPFKLIDVDGK 98

[Close]

BLAST of SMED30029314 vs. Ensembl Yeast
Match: SSA4 (Heat shock protein that is highly induced upon stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the HSP70 family; cytoplasmic protein that concentrates in nuclei upon starvation; SSA4 has a paralog, SSA3, that arose from the whole genome duplication [Source:SGD;Acc:S000000905])

HSP 1 Score: 49.6766 bits (117), Expect = 1.969e-6
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            V  F +++++++  ++   TTPSYV FTD ++LI DAAK+ A  NP+NT+F
Sbjct:   16 VAHFANDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQAAMNPHNTVF 66

[Close]

BLAST of SMED30029314 vs. Ensembl Yeast
Match: SSA3 (ATPase involved in protein folding and the response to stress; plays a role in SRP-dependent cotranslational protein-membrane targeting and translocation; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm; SSA3 has a paralog, SSA4, that arose from the whole genome duplication [Source:SGD;Acc:S000000171])

HSP 1 Score: 49.6766 bits (117), Expect = 2.367e-6
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            V  F +++++++  ++   TTPSYV FTD ++LI DAAK+ A  NP+NT+F
Sbjct:   16 VAHFSNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQAAINPHNTVF 66

[Close]

BLAST of SMED30029314 vs. Ensembl Yeast
Match: SSA2 (HSP70 family ATP-binding protein; involved in protein folding, vacuolar import of proteins; required for ubiquitin-dependent degradation of short-lived proteins; associated with chaperonin-containing T-complex; 98% identical to paralog Ssa1p with distinct functional specificity in propagation of yeast [URE3] prions and vacuolar-mediated degradation of gluconeogenesis enzymes; binds tRNA, has role in tRNA nuclear import during starvation [Source:SGD;Acc:S000003947])

HSP 1 Score: 49.2914 bits (116), Expect = 3.064e-6
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = -1

Query:  700 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF-----INKNYRNYRV--------YKIISVNVK 909
            V  F ++++ ++  ++   TTPS+V FTD ++LI DAAK+ A  NP NT+F     I +N+ +  V        +K+I V+ K
Sbjct:   16 VAHFSNDRVDIIANDQGNRTTPSFVGFTDTERLIGDAAKNQAAMNPANTVFDAKRLIGRNFNDPEVQGDMKHFPFKLIDVDGK 98

[Close]

BLAST of SMED30029314 vs. Ensembl Nematostella
Match: EDO30323 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T144])

HSP 1 Score: 58.5362 bits (140), Expect = 1.275e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++L+ DAAK+    NP NTIF  K     R
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVAMNPTNTIFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Ensembl Nematostella
Match: EDO37280 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SG65])

HSP 1 Score: 57.3806 bits (137), Expect = 2.426e-8
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV F+D ++LI DAAK+    NP NT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVAMNPENTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Nematostella
Match: EDO44530 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RV88])

HSP 1 Score: 56.6102 bits (135), Expect = 4.397e-8
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = -1

Query:  700 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF-----INKNYRNYRV--------YKIISVNVK 909
            VGVFQ+ K++++  ++   TTPSYV FTD ++L+ DAAK+    NP NTIF     I + Y +  V        +KIIS N K
Sbjct:   18 VGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVALNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNK 100

[Close]

BLAST of SMED30029314 vs. Ensembl Medaka
Match: ENSORLT00000042552.1 (pep primary_assembly:ASM223467v1:8:710990:713238:-1 gene:ENSORLG00000027683.1 transcript:ENSORLT00000042552.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.3066 bits (142), Expect = 6.373e-9
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP+NT+F  K     R
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPSNTVFDAKRLIGRR 79

[Close]

BLAST of SMED30029314 vs. Ensembl Medaka
Match: hspa8b (heat shock cognate 70 kDa protein [Source:NCBI gene;Acc:100125490])

HSP 1 Score: 60.4622 bits (145), Expect = 8.505e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Medaka
Match: hspa8b (heat shock cognate 70 kDa protein [Source:NCBI gene;Acc:100125490])

HSP 1 Score: 60.4622 bits (145), Expect = 8.859e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPNNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Medaka
Match: hsp70-5 (Oryzias latipes heat shock protein 70 (hsp70-5), mRNA. [Source:RefSeq mRNA;Acc:NM_001104914])

HSP 1 Score: 59.6918 bits (143), Expect = 1.505e-8
Identity = 27/51 (52.94%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP+NT+F
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDAERLIGDAAKNQVAMNPSNTVF 68

[Close]

BLAST of SMED30029314 vs. Ensembl Medaka
Match: ENSORLT00000027715.1 (pep primary_assembly:ASM223467v1:8:715730:793937:1 gene:ENSORLG00000026256.1 transcript:ENSORLT00000027715.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 59.3066 bits (142), Expect = 1.891e-8
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NP+NT+F  K     R
Sbjct:   20 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPSNTVFDAKRLIGRR 79

[Close]

BLAST of SMED30029314 vs. Planmine SMEST
Match: SMESG000001359.1 (SMESG000001359.1)

HSP 1 Score: 237.654 bits (605), Expect = 3.593e-73
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 3

Query:   90 MVFSSFKSDYTLLITSGNHLGKCLSINAFHRVKISLSDNQTFSLILIVFETVEDLEYDLQVISETGEVFDRLIKLNTFMWKNKTFFVYNASGSIGEHVQINSHNGTLNLCQISLFKG 440
            MVFSSFKSDYTLLITSGNHLGKCLSINAFHRVKISLSDNQTFSLILIVFETVEDLEYDLQVISETGEVFDRLIKLNTFMWKNKTFFVYNASGSIGEHVQINSHNGTLNLCQISLFKG
Sbjct:    1 MVFSSFKSDYTLLITSGNHLGKCLSINAFHRVKISLSDNQTFSLILIVFETVEDLEYDLQVISETGEVFDRLIKLNTFMWKNKTFFVYNASGSIGEHVQINSHNGTLNLCQISLFKG 117

[Close]

BLAST of SMED30029314 vs. Planmine SMEST
Match: SMESG000033437.1 (SMESG000033437.1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.857e-11
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = -1

Query:  742 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNY 909
            VGVFQH+K +++  +    T PSYVPFT  ++LIR AAKD AM NP N IF+ K++
Sbjct:   17 VGVFQHDKAEIIVNDLGNCTKPSYVPFTVTERLIRYAAKDQAMMNPTNMIFVAKHW 72

[Close]

BLAST of SMED30029314 vs. Planmine SMEST
Match: SMESG000040632.1 (SMESG000040632.1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.984e-9
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = -1

Query:  730 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIFINKNYRNYR 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F  K     R
Sbjct:   18 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVFDAKRLIGRR 77

[Close]

BLAST of SMED30029314 vs. Planmine SMEST
Match: SMESG000051570.1 (SMESG000051570.1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.064e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   17 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 67

[Close]

BLAST of SMED30029314 vs. Planmine SMEST
Match: SMESG000051567.1 (SMESG000051567.1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.064e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = -1

Query:  757 VGVFQHEKLKLLQINKETNTTPSYVPFTDLKQLIRDAAKD*AMKNPNNTIF 909
            VGVFQH K++++  ++   TTPSYV FTD ++LI DAAK+    NPNNT+F
Sbjct:   17 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTVF 67

The following BLAST results are available for this feature:

BLAST of SMED30029314 vs. Ensembl Human
BLAST of SMED30029314 vs. Ensembl Celegans
BLAST of SMED30029314 vs. Ensembl Fly
BLAST of SMED30029314 vs. Ensembl Zebrafish
BLAST of SMED30029314 vs. Ensembl Xenopus
BLAST of SMED30029314 vs. Ensembl Mouse
BLAST of SMED30029314 vs. UniProt/SwissProt
BLAST of SMED30029314 vs. TrEMBL
BLAST of SMED30029314 vs. Ensembl Cavefish
BLAST of SMED30029314 vs. Ensembl Sea Lamprey
BLAST of SMED30029314 vs. Ensembl Yeast
BLAST of SMED30029314 vs. Ensembl Nematostella
BLAST of SMED30029314 vs. Ensembl Medaka
BLAST of SMED30029314 vs. Planmine SMEST

BLAST of SMED30029314 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
HSPA8	2.156e-10	42.86	heat shock protein family A (Hsp70) member 8 [Sour...	[more]
HSPA8	2.528e-9	52.94	heat shock protein family A (Hsp70) member 8 [Sour...	[more]
HSPA8	3.129e-9	52.94	heat shock protein family A (Hsp70) member 8 [Sour...	[more]
HSPA8	3.187e-9	52.94	heat shock protein family A (Hsp70) member 8 [Sour...	[more]
HSPA8	3.496e-9	52.94	heat shock protein family A (Hsp70) member 8 [Sour...	[more]

BLAST of SMED30029314 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
hsp-70	6.951e-9	46.67	Heat Shock Protein [Source:UniProtKB/TrEMBL;Acc:O...	[more]
F44E5.5	7.587e-9	46.67	pep chromosome:WBcel235:II:11759681:11761808:1 gen...	[more]
F44E5.5	7.587e-9	46.67	pep chromosome:WBcel235:II:11759640:11761853:1 gen...	[more]
F44E5.4	7.587e-9	46.67	pep chromosome:WBcel235:II:11757106:11759323:-1 ge...	[more]
hsp-1	8.434e-8	50.98	Heat shock 70 kDa protein A [Source:UniProtKB/Swi...	[more]

BLAST of SMED30029314 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Hsc70-1	1.362e-8	50.00	gene:FBgn0001216 transcript:FBtr0075762	[more]
Hsc70-4	7.606e-8	52.94	gene:FBgn0266599 transcript:FBtr0083059	[more]
Hsc70-4	7.606e-8	52.94	gene:FBgn0266599 transcript:FBtr0337053	[more]
Hsc70-4	7.606e-8	52.94	gene:FBgn0266599 transcript:FBtr0083058	[more]
Hsc70-4	7.606e-8	52.94	gene:FBgn0266599 transcript:FBtr0083060	[more]

BLAST of SMED30029314 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
hsp70.1	1.559e-9	54.90	heat shock cognate 70-kd protein, tandem duplicate...	[more]
hsp70.2	1.559e-9	54.90	heat shock cognate 70-kd protein, tandem duplicate...	[more]
hspa8	2.223e-9	52.94	heat shock protein 8 [Source:NCBI gene;Acc:573376]	[more]
hspa1b	4.589e-9	56.86	heat shock protein family A (Hsp70) member 1B [Sou...	[more]
hsp70.3	5.062e-9	50.00	heat shock cognate 70-kd protein, tandem duplicate...	[more]

BLAST of SMED30029314 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
wdr26	3.823e-8	48.33	WD repeat domain 26 [Source:Xenbase;Acc:XB-GENE-99...	[more]
wdr26	3.949e-8	48.33	WD repeat domain 26 [Source:Xenbase;Acc:XB-GENE-99...	[more]
ENSXETT00000032295.1	4.261e-8	48.33	heat shock protein family A (Hsp70) member 1A [Sou...	[more]
wdr26	4.320e-8	48.33	WD repeat domain 26 [Source:Xenbase;Acc:XB-GENE-99...	[more]
wdr26	4.346e-8	48.33	WD repeat domain 26 [Source:Xenbase;Acc:XB-GENE-99...	[more]

BLAST of SMED30029314 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Hspa8	3.209e-9	52.94	heat shock protein 8 [Source:MGI Symbol;Acc:MGI:10...	[more]
Hspa2	2.023e-8	54.90	heat shock protein 2 [Source:MGI Symbol;Acc:MGI:96...	[more]
Hspa2	2.023e-8	54.90	heat shock protein 2 [Source:MGI Symbol;Acc:MGI:96...	[more]
Hspa1l	3.180e-8	52.94	heat shock protein 1-like [Source:MGI Symbol;Acc:M...	[more]
Hspa8	3.305e-8	48.33	heat shock protein 8 [Source:MGI Symbol;Acc:MGI:10...	[more]

BLAST of SMED30029314 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|P02826\|HSP7A_DROSI	1.886e-8	54.90	Heat shock 70 kDa protein cognate 1 (Fragments) OS...	[more]
sp\|Q91233\|HSP70_ONCTS	4.203e-8	54.90	Heat shock 70 kDa protein OS=Oncorhynchus tshawyts...	[more]
sp\|Q9U639\|HSP7D_MANSE	6.496e-8	56.86	Heat shock 70 kDa protein cognate 4 OS=Manduca sex...	[more]
sp\|Q04967\|HSP76_PIG	1.014e-7	52.94	Heat shock 70 kDa protein 6 OS=Sus scrofa OX=9823 ...	[more]
sp\|P29843\|HSP7A_DROME	1.366e-7	50.00	Heat shock 70 kDa protein cognate 1 OS=Drosophila ...	[more]

BLAST of SMED30029314 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A3L6DSK2	1.602e-8	54.90	Heat shock protein OS=Zea mays OX=4577 GN=HSP70_1 ...	[more]
A0A2A4AYR6	4.315e-8	56.86	Molecular chaperone DnaK (Fragment) OS=Pseudomonas...	[more]
A0A1B6E138	1.036e-7	56.86	Uncharacterized protein (Fragment) OS=Clastoptera ...	[more]
G8G3P2	1.509e-7	56.86	Heat shock protein (Fragment) OS=Bactericera cocke...	[more]
A0A3B1JZ85	1.573e-7	54.90	Uncharacterized protein OS=Astyanax mexicanus OX=7...	[more]

BLAST of SMED30029314 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSAMXT00000032722.1	5.957e-11	54.90	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
hspa1b	3.391e-9	51.67	heat shock protein family A (Hsp70) member 1B [Sou...	[more]
ENSAMXT00000055474.1	4.600e-9	54.90	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000031477.1	4.600e-9	54.90	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]
ENSAMXT00000037064.1	5.224e-9	54.90	heat shock 70 kDa protein [Source:NCBI gene;Acc:11...	[more]

BLAST of SMED30029314 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of SMED30029314 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 4


Match Name	E-value	Identity	Description
SSA1	1.718e-6	34.94	ATPase involved in protein folding and NLS-directe...	[more]
SSA4	1.969e-6	45.10	Heat shock protein that is highly induced upon str...	[more]
SSA3	2.367e-6	45.10	ATPase involved in protein folding and the respons...	[more]
SSA2	3.064e-6	34.94	HSP70 family ATP-binding protein; involved in prot...	[more]

BLAST of SMED30029314 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3


Match Name	E-value	Identity	Description
EDO30323	1.275e-8	48.33	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO37280	2.426e-8	50.98	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO44530	4.397e-8	42.17	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30029314 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSORLT00000042552.1	6.373e-9	48.33	pep primary_assembly:ASM223467v1:8:710990:713238:-...	[more]
hspa8b	8.505e-9	54.90	heat shock cognate 70 kDa protein [Source:NCBI gen...	[more]
hspa8b	8.859e-9	54.90	heat shock cognate 70 kDa protein [Source:NCBI gen...	[more]
hsp70-5	1.505e-8	52.94	Oryzias latipes heat shock protein 70 (hsp70-5), m...	[more]
ENSORLT00000027715.1	1.891e-8	48.33	pep primary_assembly:ASM223467v1:8:715730:793937:1...	[more]

BLAST of SMED30029314 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000001359.1	3.593e-73	100.00	SMESG000001359.1	[more]
SMESG000033437.1	2.857e-11	53.57	SMESG000033437.1	[more]
SMESG000040632.1	3.984e-9	50.00	SMESG000040632.1	[more]
SMESG000051570.1	4.064e-9	54.90	SMESG000051570.1	[more]
SMESG000051567.1	4.064e-9	54.90	SMESG000051567.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30029314 ID=SMED30029314|Name=SMED30029314|organism=Schmidtea mediterranea sexual|type=transcript|length=3153bp
GTTGAATGCAAATACAAAAATATCGTCAAAATTTAAATTGCGTAAAATTA
TTTTATTTGGGTTCGTCGCAGCTTATTTCATTAAACGAAATGGTATTTTC
TTCGTTTAAAAGTGATTATACTTTGTTGATAACAAGTGGGAATCATTTAG
GAAAATGTTTATCCATCAACGCTTTCCATAGAGTTAAAATTAGTTTGAGT
GATAATCAAACTTTTTCATTAATTTTAATTGTATTTGAAACTGTAGAAGA
TTTGGAATACGATTTGCAGGTGATTTCAGAAACGGGGGAGGTTTTTGATA
GGCTTATTAAATTGAATACATTCATGTGGAAAAATAAGACTTTTTTTGTT
TATAATGCAAGTGGAAGTATTGGTGAACATGTACAGATAAATAGTCACAA
TGGAACATTGAATCTATGCCAGATTTCGCTTTTCAAAGGTAATAATATCC
ATATTATATTCATTCTTTAATAATAATTCTTACAATACTAAAATTTATCA
TCCTATCGATTTATAATAAATTTTAGTTATTGATTTGAGCATTTTTAAAA
ATATTTAATGCATATTATTAACGGATGAGTTAAATTTGACACTGATGTGA
AAAATAATTTGATATCTATTGTTTTTGCTATATCTATTATTTATTTCCAT
TTATAGAAGGCTAGTATGTTTGTTAATGTGAGACATGCATACTGAGTATT
TTAACGTTTACACTTATAATTTTATATACTCGATAATTTCTGTAATTTTT
ATTTATAAAAATCGTATTATTGGGGTTTTTCATAGCTTAATCTTTTGCAG
CATCTCTAATCAATTGTTTTAAATCTGTAAATGGAACATAACTGGGCGTT
GTGTTGGTTTCCTTGTTTATTTGCAATAATTTCAGCTTTTCATGTTGAAA
TACTCCAACACGTGGTAGTACTCAAATCATTACAGATATCGTTAGAAAAG
ATTTAAATAAGTGATTGTAAAATTAAAAAAGGAAGGATTAAATGTCAAAA
CGTTATTTGCTCCAAATATAAATATCCAAAGAATTACCAGCTCCAAAAAG
AGTCCAAATTCATAATAAACATCTAAGTTAGTTCCAAATACACAAGTTCA
TAGAACTCAAATTAAACATAAAAATCCATAGTAAACATCAGCAATTTCAT
ATAATTGATTCGAATAAACAAATTATCAAGAAACTACAATCGTACACACA
GACGCGCGAAACGAAATTGACCCTATACATTTGATATTATATCTTGTTTT
CTTTGTTATACAAATTACAAGAAATAAAATATAAAATTTCAGGATAATGG
TTTGCCGGGAATTAGGCTATTTGGCAATAAATATCCACCCGGCTTAGAAA
GGTTCTTTGCCCCCTAAAACATAACCAATAGGCGAGGAATTGCTAAAAAA
GCCGAAGACAAGCGCTAGTTAGTCGAAATGGAGTTTTAAAAGTAAAAGTG
TATAGAGGAGAGCAAAGCAATATTAAAAGAAAGAAAATTAGATTGTGTTT
TGATTTTACTATTAACGGTGATACCCATCGGACGTCTAGCCTGTTTTTGA
ATGTTTGAATTGATTTTGGAAATAAAAATTTTGTTGGGATTTGTTTTGTT
ATTTTGATTTCCGAACACGAGGAATCGGATCGAGTTTCAGTTTCATCAAC
AAACTTTTTACTATCCCAACAATGATTGATTGTAATACATAAAAATTTAT
TTTCGTGTTCCAAGGACTGTTTTTTACTCAAATGTCCGAATAAATAATAA
ATTTCTATTTAAGTCAAACAAAGTTATTCGAATTCCACCCTCAGCCAATG
AAATTAACTTCGTACATCAATGTATCTATTTCGAACAATAAAGTTATATC
ATCAACACTGATAATGAATTTACGTGTGTAACACTATTCGTGAATATCAT
TATTGTGACAATATTTGTGGTGATTCTCATTATCATTGTGCTATATGAAT
CTCGACTACTGTTCAAGTTTTCTACGAATCAATCCATGGACTCCGATGCC
TTGGATTGGCTATGAAAAAACATTTATGTAGTAAGACATAACTATTCTGC
ATGCAATTTGATAAAGTAGCAATAATATAATAGTAGTGACATTTATTTTA
TGAATATTGCTAGCATTTTGTGTGAATCTATACTTTTCCATATTGTTGAG
GTTGTTATAATAATTATGGAAATAAAATGAGTGCACTCGAAAAATCGAAG
GTGAACAAAATAACACCAAAAATCATTAAAGTGCAAATTAGTTAAAAATT
TATAAATTAATATTGATCGGTGTAAATTGGTATGGTTGAACATCAAATCG
TCCTAAAGATTTGGGACAATAATTGTATAATTATAGATAATTATTCTCAG
TATAAAAATAGCGCGAGTTAGACGAGTTGCCAGTAGGTCGAAGAAGTTGG
AAAATAGAATTTGATATTAAGAAAACCCGAGGAGGTCAGAAACTGAAAAT
AAGCAAATTTAAATCAATGATAATTAAATTTATGTGCAGATGAGGCGATA
TTCCATTGGAACATCTGCCTCCACGTTTAGAATCGAATACTGATAAAAGA
GTGCAAATATTGTGACAAATTGTAAATTTTGTGATCGAGATTAATAAACG
TATTCTGTTTTTGGTTTTGGTTATTTGATATAATAAAAGGAGCACGAGGA
GTCAGAAAGTTGACCGACTTAAAATAAAAAAACCAACAATATGATACGAG
AAAACTAAATTTAATTGACTGACGCTGAATAGTGGGGTAAGGAAAAAATG
CTGAAAATCTAACAAAAGTATATAAGGCAGGGGTAAATTCATTTAACTAA
ATAAATATTTTTCAATTTTTAAAAAATATTTAAAATTTCATACATGTGAA
GCGTTGTTGATAAGGTTTTAGATCCAAAAATTGTGAAGACTGCTGCAAAT
ACGCACATTTTGAATGTTTGATATGTGGTTTGGTTGTTAAATTTTTGGTG
TCTGAATTTTTGTTGTAGTTTTCAAATGTATTGCGTTGTTAAATTAGTAT
GTTAAATAACTGTTTTTAACATTGATTTTTAGTTAAAAATAAATAGTTAT
TTAAACTTTTAAAATTTTTAAAATCATGATAACAAATTTGTTTATTCAAT
CTATCATATCTATAGTTTTTTTTCTGTACTTACTGGCAGGAAACTACCGA
AAT

protein sequence of SMED30029314-orf-1

>SMED30029314-orf-1 ID=SMED30029314-orf-1|Name=SMED30029314-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=155bp
MQIQKYRQNLNCVKLFYLGSSQLISLNEMVFSSFKSDYTLLITSGNHLGK
CLSINAFHRVKISLSDNQTFSLILIVFETVEDLEYDLQVISETGEVFDRL
IKLNTFMWKNKTFFVYNASGSIGEHVQINSHNGTLNLCQISLFKGNNIHI
IFIL*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000014	zeta neoblast
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Main menu

SMED30029314

Zeng et. al., 2018

▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 3

Owlery

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