RNA binding protein EWS

Overview
NameRNA binding protein EWS
Smed IDSMED30029313
Length (bp)2067
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RNA binding protein EWS (SMED30029313) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA binding protein EWS (SMED30029313) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA binding protein EWS (SMED30029313) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA binding protein EWS (SMED30029313) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30029313

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 9

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
protonephridiaSMED30029313h1SMcG0017324 dd_Smed_v4_1370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30029313h1SMcG0017324 dd_Smed_v4_1370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
gutSMED30029313h1SMcG0017324 dd_Smed_v4_1370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30029313h1SMcG0017324 dd_Smed_v4_1370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
muscle cellSMED30029313h1SMcG0017324 dd_Smed_v4_1370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neoblastSMED30029313h1SMcG0017324 dd_Smed_v4_1370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30029313h1SMcG0017324 dd_Smed_v4_1370_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029313h1SMcG0017324 Contig53582newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30029313h1SMcG0017324 Contig53582uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508])

HSP 1 Score: 65.855 bits (159), Expect = 5.267e-11
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  ++  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:   17 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 101
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508])

HSP 1 Score: 67.0106 bits (162), Expect = 6.124e-11
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  ++  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:  289 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 373
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508])

HSP 1 Score: 67.0106 bits (162), Expect = 6.464e-11
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  ++  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:  323 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 407
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508])

HSP 1 Score: 67.0106 bits (162), Expect = 6.769e-11
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  ++  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:  305 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 389
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508])

HSP 1 Score: 67.0106 bits (162), Expect = 7.161e-11
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  ++  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:  360 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 444
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Celegans
Match: rbm-3.2 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:O45713])

HSP 1 Score: 46.2098 bits (108), Expect = 2.827e-6
Identity = 30/86 (34.88%), Postives = 43/86 (50.00%), Query Frame = 3 
Query:  756 TVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATN 1007
            +VYV N P     + L N FS++G++          + I  DR  G P+G A V +   ++A  AV  F   DFNGR + V +A N
Sbjct:    5 SVYVGNAPFQTTEDDLGNYFSQAGNVS--------NVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQN 82
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Fly
Match: caz (gene:FBgn0285954 transcript:FBtr0334990)

HSP 1 Score: 63.5438 bits (153), Expect = 2.635e-10
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            +T++VS +  +   + ++  F   G IK + ++  P IW++K++  G  KG+A VTYD  ++A +A+ +F   DFNG  I+V +A
Sbjct:  105 DTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLA 189
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Fly
Match: caz (gene:FBgn0285954 transcript:FBtr0334991)

HSP 1 Score: 63.1586 bits (152), Expect = 2.690e-10
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            +T++VS +  +   + ++  F   G IK + ++  P IW++K++  G  KG+A VTYD  ++A +A+ +F   DFNG  I+V +A
Sbjct:   76 DTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLA 160
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Fly
Match: caz (gene:FBgn0285954 transcript:FBtr0074217)

HSP 1 Score: 63.5438 bits (153), Expect = 2.761e-10
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            +T++VS +  +   + ++  F   G IK + ++  P IW++K++  G  KG+A VTYD  ++A +A+ +F   DFNG  I+V +A
Sbjct:  120 DTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLA 204
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: ewsr1a (EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317])

HSP 1 Score: 72.4034 bits (176), Expect = 9.986e-13
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIF--KDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            +T+Y++ L +N   E + + F  SG I++N ++G+P + I+  KD G PKGDA ++Y+   SA  AV +F   DF G++++V +A
Sbjct:  346 STIYITGLTENATLEEVADFFKHSGIIRINKRTGLPAVNIYTDKDTGKPKGDATLSYEEPPSAKAAVEWFDGKDFQGKKLKVSMA 430
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: taf15 (TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102])

HSP 1 Score: 63.929 bits (154), Expect = 5.013e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 3 
Query:  756 TVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            T++V  L ++++ + + + F + G IK+N K+G PMI ++ D+  G  KG+A V++D   SA  A+ +F   +FNGR I+V  AT
Sbjct:   42 TIFVQGLGEDVNAQEVGDYFKQIGIIKVNKKTGKPMINLYSDKATGRLKGEATVSFDDPPSAKAAIDWFDGKEFNGRPIKVSFAT 126
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: fus (FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1010])

HSP 1 Score: 66.6254 bits (161), Expect = 5.576e-11
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L  +   + + + F + G IK+N K+G+PMI ++ DR  G  KG+A V++D   SA  A+ +F   DFNG  I+V  AT
Sbjct:  288 NTIFVQGLGDDYTVDSVADYFKQIGIIKVNKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 373
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: fus (FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1010])

HSP 1 Score: 66.2402 bits (160), Expect = 6.623e-11
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L  +   + + + F + G IK+N K+G+PMI ++ DR  G  KG+A V++D   SA  A+ +F   DFNG  I+V  AT
Sbjct:  285 NTIFVQGLGDDYTVDSVADYFKQIGIIKVNKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 370
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: fus (FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1010])

HSP 1 Score: 66.2402 bits (160), Expect = 7.672e-11
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L  +   + + + F + G IK+N K+G+PMI ++ DR  G  KG+A V++D   SA  A+ +F   DFNG  I+V  AT
Sbjct:  299 NTIFVQGLGDDYTVDSVADYFKQIGIIKVNKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 384
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:100038234])

HSP 1 Score: 65.0846 bits (157), Expect = 2.281e-10
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L +N+  E + + F + G IK N K+G PMI ++ DR  G  KG+A V++D   SA  A+ +F   +F+G  I+V  AT
Sbjct:  284 NTIFVQGLGENVTVESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 369
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:100038234])

HSP 1 Score: 65.0846 bits (157), Expect = 2.480e-10
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L +N+  E + + F + G IK N K+G PMI ++ DR  G  KG+A V++D   SA  A+ +F   +F+G  I+V  AT
Sbjct:  298 NTIFVQGLGENVTVESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 383
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:100038234])

HSP 1 Score: 64.3142 bits (155), Expect = 4.386e-10
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L +N+  E + + F + G IK N K+G PMI ++ DR  G  KG+A V++D   SA  A+ +F   +F+G  I+V  AT
Sbjct:  298 NTIFVQGLGENVTVESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 383
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: ewsr1 (EWS RNA binding protein 1 [Source:NCBI gene;Acc:394931])

HSP 1 Score: 61.2326 bits (147), Expect = 3.836e-9
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            +T+YV  L  N+  E + + F   G +K+N ++G P++ +F D+  G PKGD  V+++   SA  A+      D NG +++V +A
Sbjct:  287 STIYVQGLNDNVTVEEIVDFFKHCGDVKINKRTGEPLVNLFMDKETGKPKGDGTVSFEDPPSAKTAIELCDGKDLNGNKVKVSLA 371
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: ewsr1 (EWS RNA binding protein 1 [Source:NCBI gene;Acc:394931])

HSP 1 Score: 61.2326 bits (147), Expect = 4.405e-9
Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            +T+YV  L  N+  E + + F   G +K+N ++G P++ +F D+  G PKGD  V+++   SA  A+      D NG +++V +A
Sbjct:  367 STIYVQGLNDNVTVEEIVDFFKHCGDVKINKRTGEPLVNLFMDKETGKPKGDGTVSFEDPPSAKTAIELCDGKDLNGNKVKVSLA 451
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Ewsr1 (Ewing sarcoma breakpoint region 1 [Source:MGI Symbol;Acc:MGI:99960])

HSP 1 Score: 68.9366 bits (167), Expect = 1.369e-11
Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  N+  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:  323 SAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 407
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Ewsr1 (Ewing sarcoma breakpoint region 1 [Source:MGI Symbol;Acc:MGI:99960])

HSP 1 Score: 68.9366 bits (167), Expect = 1.370e-11
Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  N+  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:  360 SAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 444
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Ewsr1 (Ewing sarcoma breakpoint region 1 [Source:MGI Symbol;Acc:MGI:99960])

HSP 1 Score: 68.9366 bits (167), Expect = 1.391e-11
Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  N+  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:  366 SAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 450
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Fus (fused in sarcoma [Source:MGI Symbol;Acc:MGI:1353633])

HSP 1 Score: 65.855 bits (159), Expect = 1.048e-10
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L +N+  E + + F + G IK N K+G PMI ++ DR  G  KG+A V++D   SA  A+ +F   +F+G  I+V  AT
Sbjct:  278 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 363
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Fus (fused in sarcoma [Source:MGI Symbol;Acc:MGI:1353633])

HSP 1 Score: 65.855 bits (159), Expect = 1.083e-10
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L +N+  E + + F + G IK N K+G PMI ++ DR  G  KG+A V++D   SA  A+ +F   +F+G  I+V  AT
Sbjct:  277 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 362
[Close]
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|Q9AST1|TAF15_ARATH (Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.631e-13
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 3 
Query:  756 TVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGV--PKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            +VYVSNLP   D  ML + F   G +K + ++G P +W+++D+    PKGDA VTY+   +A  AV +F + DF+G  I V +A
Sbjct:    9 SVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVTYEDPHAALAAVEWFNNKDFHGNTIGVFMA 92
[Close]
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|Q61545|EWS_MOUSE (RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 9.586e-11
Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  N+  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:  360 SAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 444
[Close]
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|Q01844|EWS_HUMAN (RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.533e-10
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            + +YV  L  ++  + L + F + G +K+N ++G PMI I+ D+  G PKGDA V+Y+   +A  AV +F   DF G +++V +A
Sbjct:  361 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 445
[Close]
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|Q28009|FUS_BOVIN (RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.322e-10
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L +N+  E + + F + G IK N K+G PMI ++ DR  G  KG+A V++D   SA  A+ +F   +F+G  I+V  AT
Sbjct:  272 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 357
[Close]
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|P56959|FUS_MOUSE (RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.331e-10
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L +N+  E + + F + G IK N K+G PMI ++ DR  G  KG+A V++D   SA  A+ +F   +F+G  I+V  AT
Sbjct:  278 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 363
[Close]
BLAST of RNA binding protein EWS vs. TrEMBL
Match: A0A068YD99 (RNA binding protein EWS OS=Echinococcus multilocularis OX=6211 GN=EmuJ_001020700 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.328e-33
Identity = 77/211 (36.49%), Postives = 116/211 (54.98%), Query Frame = 3 
Query:  729 NEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESIS-RNNDYENDSYDWQ--KREDGGFKQRDFRSX----XXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHK 1340
            N DG LR +TV+VS LPQN+DHE++K+ F   G IK+N+K+GMPMIWIFK+RG+PKGDALVT++       A+ +F +++F G++IEV+ A N++RP++ P  SG                +  +S  ++D   D Y  Q   R DG  + R                     NR  DW C  C   NF+ R+ C  C  P++++ + + +
Sbjct:  194 NPDG-LREDTVFVSKLPQNIDHEVMKSHFGTIGKIKMNAKTGMPMIWIFKERGIPKGDALVTFEDPQCVQKAIKWFSENEFLGKKIEVKQAKNSQRPVIIPSGSGGQQHNNSGAASNRPGSLNQLSVGSSDRTVDMYGGQFDPRNDGPLQSRGGGGRPPINAGGMRAIGGPGVNRAGDWCCQSCGRLNFAGRDQCKPCGAPRSDDGMMMSR 403
[Close]
BLAST of RNA binding protein EWS vs. TrEMBL
Match: A0A0R3S8V5 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS617 PE=4 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.653e-33
Identity = 79/201 (39.30%), Postives = 113/201 (56.22%), Query Frame = 3 
Query:  729 NEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXX---XXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAEN 1322
            N DG LR +TV+VS LPQN+DHE +K QF   G IK+N+KSGMPMIWIFK+RG+PKGDALVT++       A+ YF ++DF G++IEV+ A N++RP++ P SSGQ      +  G N  ++ S   N   +     +  R D      + R+               +    DW C  C   +F+ R+ CN C  P+ ++
Sbjct:  188 NPDG-LREDTVFVSKLPQNIDHETMKVQFGTVGKIKMNAKSGMPMIWIFKERGIPKGDALVTFEDPHCVQKAIKYFSENDFMGKKIEVKQAKNSQRPVIIP-SSGQQQNSAVQGSGRNNIEMSSFGGNQTIDVYGGQFNSRNDVASMPVNVRNPGQMRGIGGMLCPVSSRSNSDWHCQSCGRLHFAGRDQCNPCGAPRPDD 386
[Close]
BLAST of RNA binding protein EWS vs. TrEMBL
Match: A0A068WIE2 (RNA binding protein EWS OS=Echinococcus granulosus OX=6210 GN=EgrG_001020700 PE=4 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.765e-33
Identity = 77/211 (36.49%), Postives = 115/211 (54.50%), Query Frame = 3 
Query:  729 NEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESIS-RNNDYENDSYDWQ--KREDGGFKQRDFRSX----XXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHK 1340
            N DG LR +TV+VS LPQN+DHE++K+ F   G IK+N+K+GMPMIWIFK+RG+PKGDALVT++       A+ +F +++F G++IEV+ A N++RP++ P  SG                +  +S  ++D   D Y  Q   R DG  + R                     NR  DW C  C   NF+ R+ C  C  P+ ++ + + +
Sbjct:  194 NPDG-LREDTVFVSKLPQNIDHEVMKSHFGTIGKIKMNAKTGMPMIWIFKERGIPKGDALVTFEDPQCVQKAIKWFSENEFLGKKIEVKQAKNSQRPVIIPSGSGGQQHNNSGAASNRPGSLNQLSVGSSDRTVDMYGGQFDPRNDGPLQSRGGGGRPPINAGGMRAIGGPGVNRAGDWCCQSCGRLNFAGRDQCKPCGAPRPDDGMMMSR 403
[Close]
BLAST of RNA binding protein EWS vs. TrEMBL
Match: W6V030 (RNA-binding protein EWS OS=Echinococcus granulosus OX=6210 GN=EGR_00721 PE=4 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.075e-32
Identity = 77/219 (35.16%), Postives = 114/219 (52.05%), Query Frame = 3 
Query:  729 NEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNN---------DYENDSYDWQ--KREDGGFKQRDFRSX----XXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHK 1340
            N DG LR +TV+VS LPQN+DHE++K+ F   G IK+N+K+GMPMIWIFK+RG+PKGDALVT++       A+ +F +++F G++IEV+ A N++RP++ P  SG                +  +S  +         D   D Y  Q   R DG  + R                     NR  DW C  C   NF+ R+ C  C  P+ ++ + + +
Sbjct:  194 NPDG-LREDTVFVSKLPQNIDHEVMKSHFGTIGKIKMNAKTGMPMIWIFKERGIPKGDALVTFEDPQCVQKAIKWFSENEFLGKKIEVKQAKNSQRPVIIPSGSGGQQHNNSGAASNRPGSLNQLSVGSSGMTILAGADRTVDMYGGQFDPRNDGPLQSRGGGGRPPINAGGMRAIGGPGVNRAGDWCCQSCGRLNFAGRDQCKPCGAPRPDDGMMMSR 411
[Close]
BLAST of RNA binding protein EWS vs. TrEMBL
Match: A0A1S8WYS8 (Uncharacterized protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_04520 PE=4 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.104e-32
Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 3 
Query:  714 QLGNQNEDGA--LRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSS 1040
            Q G  N+ GA  LR +TV+VSNLPQ +DHE +K QF   G IK+NSKSGMPM+WIFK++GVPKG+ALVTY+   S   A+ YF +H+F GR+IEV+ A N++RP++ PP  
Sbjct:  180 QRGGFNKYGADGLREDTVFVSNLPQTIDHETMKTQFGVIGKIKINSKSGMPMVWIFKEKGVPKGEALVTYEDPQSVQAAIKYFAEHEFLGRKIEVKQAVNSQRPVILPPGG 290
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: ewsr1b (EWS RNA binding protein 1 [Source:NCBI gene;Acc:103029174])

HSP 1 Score: 70.4774 bits (171), Expect = 3.489e-12
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3 
Query:  714 QLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            ++G+Q +D +   +T+Y++ L +N     + + F  +G I++N + G P I I+ DR  G PKGDA ++Y+    A  AV YF   +F GRR++V +A
Sbjct:  320 EMGHQEQDDSEN-STIYITGLTENAALPEMADFFKHTGPIRMNRRLGQPAINIYTDRDSGKPKGDATLSYEEPQFARAAVEYFDGKEFQGRRLKVSMA 416
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: ewsr1b (EWS RNA binding protein 1 [Source:NCBI gene;Acc:103029174])

HSP 1 Score: 70.0922 bits (170), Expect = 3.876e-12
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3 
Query:  714 QLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            ++G+Q +D +   +T+Y++ L +N     + + F  +G I++N + G P I I+ DR  G PKGDA ++Y+    A  AV YF   +F GRR++V +A
Sbjct:  315 EMGHQEQDDSEN-STIYITGLTENAALPEMADFFKHTGPIRMNRRLGQPAINIYTDRDSGKPKGDATLSYEEPQFARAAVEYFDGKEFQGRRLKVSMA 411
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:103040960])

HSP 1 Score: 67.3958 bits (163), Expect = 2.484e-11
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L  N   + + + F + G IK+N K+G+PMI ++ DR  G  KG+A V++D   SA  A+ +F   DFNG  I+V  AT
Sbjct:  312 NTIFVQGLGDNYTVDSVADFFKQIGIIKINKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 397
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:103040960])

HSP 1 Score: 67.3958 bits (163), Expect = 2.522e-11
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L  N   + + + F + G IK+N K+G+PMI ++ DR  G  KG+A V++D   SA  A+ +F   DFNG  I+V  AT
Sbjct:  316 NTIFVQGLGDNYTVDSVADFFKQIGIIKINKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 401
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: taf15 (TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102])

HSP 1 Score: 63.1586 bits (152), Expect = 4.189e-10
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L +++  + + + F + G IK+N K+G PMI ++ D+  G  KG+A V++D   SA  A+ +F D +FNG+ I+V  AT
Sbjct:  223 NTIFVQGLGEDVSTQEVSDYFKQIGIIKVNKKTGKPMINLYTDKATGRLKGEATVSFDDPPSAKAAIDWF-DKEFNGKPIKVSFAT 307
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Yeast
Match: CUS2 (Putative checkpoint factor in transcription; binds to U2 snRNA and Prp11p; regulates toggling of the U2 snRNA stem II region between different structures; contains two RNA recognition motifs (RRMs) [Source:SGD;Acc:S000005230])

HSP 1 Score: 53.1434 bits (126), Expect = 4.382e-8
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 3 
Query:  756 TVYVSNLPQN-LDHEMLKNQFSKSGSIKLNSKSGMPMIWIF-KDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            ++Y+S LP +    E L  QF K G I+ N + G P+  ++  D+G  KGDAL+TY    S T A+    +  F G++I V  A
Sbjct:   46 SIYISGLPTDKTTKEGLTEQFCKYGMIRTN-RDGEPLCKLYVNDKGAFKGDALITYSKEESVTLAIEMMNESIFLGKQIRVERA 128
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Nematostella
Match: EDO50063 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RF99])

HSP 1 Score: 63.5438 bits (153), Expect = 1.395e-10
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKD-RGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            +T++VSN+  N   E +K  F   G IK++ K   P IWI+K   G  KG+  VTY+   +A+ A+ +F   DF G+ I+V +A
Sbjct:  220 DTIFVSNMSPNSTEEDIKGLFGSIGIIKIDKKLQKPKIWIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFMGQSIKVELA 303
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Medaka
Match: taf15 (TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102])

HSP 1 Score: 68.1662 bits (165), Expect = 3.689e-12
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 3 
Query:  753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004
            NT++V  L ++   + + + F + G IK+N K+G PMI I+ D+  G PKG+A V++D   SA  A+ +F   +FNG+ I+V  AT
Sbjct:   66 NTIFVQGLGEDATVQEVGDYFKQIGIIKVNKKTGQPMINIYSDKATGRPKGEATVSFDDPPSAKAAIDWFDGKEFNGKPIKVSFAT 151
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Medaka
Match: ewsr1b (EWS RNA binding protein 1 [Source:NCBI gene;Acc:101163744])

HSP 1 Score: 65.4698 bits (158), Expect = 1.028e-10
Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 3 
Query:  714 QLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            ++G   E      +T+Y++ L +  + E +   F   G I++N + G P I I+ D+  G PKGDA ++Y+    A  AV +F   +F GRR++V +A
Sbjct:  304 EMGRPEEQDDSENSTIYITGLTEKANLEEMAEFFKHVGPIRMNRRLGQPAINIYTDKESGKPKGDATLSYEEPICAKAAVEHFDGKEFQGRRLKVSMA 401
[Close]
BLAST of RNA binding protein EWS vs. Ensembl Medaka
Match: ewsr1b (EWS RNA binding protein 1 [Source:NCBI gene;Acc:101163744])

HSP 1 Score: 65.4698 bits (158), Expect = 1.105e-10
Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 3 
Query:  714 QLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001
            ++G   E      +T+Y++ L +  + E +   F   G I++N + G P I I+ D+  G PKGDA ++Y+    A  AV +F   +F GRR++V +A
Sbjct:  305 EMGRPEEQDDSENSTIYITGLTEKANLEEMAEFFKHVGPIRMNRRLGQPAINIYTDKESGKPKGDATLSYEEPICAKAAVEHFDGKEFQGRRLKVSMA 402
[Close]
BLAST of RNA binding protein EWS vs. Planmine SMEST
Match: SMESG000054049.1 (SMESG000054049.1)

HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0
Identity = 450/452 (99.56%), Postives = 450/452 (99.56%), Query Frame = 3 
Query:  120 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPXXXXXXXXXXXXXFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG--DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDXXXXXXXXXXXXRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDXXXXXXXXXXXXXTVPRNSNPRNEGGPMRGPKRSTSRPEPY 1469
            MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG  DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNYNSNNGGNHHNRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY
Sbjct:    1 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGVWDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNYNSNNGGNHHNRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY 452
[Close]
BLAST of RNA binding protein EWS vs. Planmine SMEST
Match: SMESG000054049.1 (SMESG000054049.1)

HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0
Identity = 433/450 (96.22%), Postives = 433/450 (96.22%), Query Frame = 3 
Query:  120 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPXXXXXXXXXXXXXFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDXXXXXXXXXXXXRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDXXXXXXXXXXXXXTVPRNSNPRNEGGPMRGPKRSTSRPEPY 1469
            MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY               N N DGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY
Sbjct:    1 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY---------------NSNNDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY 435
[Close]
BLAST of RNA binding protein EWS vs. Planmine SMEST
Match: SMESG000054049.1 (SMESG000054049.1)

HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0
Identity = 433/452 (95.80%), Postives = 433/452 (95.80%), Query Frame = 3 
Query:  120 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPXXXXXXXXXXXXXFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG--DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDXXXXXXXXXXXXRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDXXXXXXXXXXXXXTVPRNSNPRNEGGPMRGPKRSTSRPEPY 1469
            MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG  DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY               N N DGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY
Sbjct:    1 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGVWDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY---------------NSNNDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY 437
[Close]
BLAST of RNA binding protein EWS vs. Planmine SMEST
Match: SMESG000054049.1 (SMESG000054049.1)

HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 427/452 (94.47%), Postives = 428/452 (94.69%), Query Frame = 3 
Query:  120 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPXXXXXXXXXXXXXFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG--DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDXXXXXXXXXXXXRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDXXXXXXXXXXXXXTVPRNSNPRNEGGPMRGPKRSTSRPEPY 1469
            MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG  DANQIQQMNSYGGMNPLLAQSLQ     +MYGGSDAMNMAFQGMMSAQRGQLSNSERDNY               N N DGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY
Sbjct:    1 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGVWDANQIQQMNSYGGMNPLLAQSLQ-----DMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY---------------NSNNDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY 432
The following BLAST results are available for this feature:
BLAST of RNA binding protein EWS vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
EWSR15.267e-1136.47EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:... [more]
EWSR16.124e-1136.47EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:... [more]
EWSR16.464e-1136.47EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:... [more]
EWSR16.769e-1136.47EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:... [more]
EWSR17.161e-1136.47EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:... [more]
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BLAST of RNA binding protein EWS vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rbm-3.22.827e-634.88RNA Binding Motif protein homolog [Source:UniProt... [more]
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BLAST of RNA binding protein EWS vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 3
Match NameE-valueIdentityDescription
caz2.635e-1034.12gene:FBgn0285954 transcript:FBtr0334990[more]
caz2.690e-1034.12gene:FBgn0285954 transcript:FBtr0334991[more]
caz2.761e-1034.12gene:FBgn0285954 transcript:FBtr0074217[more]
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BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ewsr1a9.986e-1337.65EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GE... [more]
taf155.013e-1137.65TAF15 RNA polymerase II, TATA box binding protein ... [more]
fus5.576e-1139.53FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-... [more]
fus6.623e-1139.53FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-... [more]
fus7.672e-1139.53FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-... [more]
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BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5
Match NameE-valueIdentityDescription
fus2.281e-1039.53FUS RNA binding protein [Source:NCBI gene;Acc:1000... [more]
fus2.480e-1039.53FUS RNA binding protein [Source:NCBI gene;Acc:1000... [more]
fus4.386e-1039.53FUS RNA binding protein [Source:NCBI gene;Acc:1000... [more]
ewsr13.836e-932.94EWS RNA binding protein 1 [Source:NCBI gene;Acc:39... [more]
ewsr14.405e-932.94EWS RNA binding protein 1 [Source:NCBI gene;Acc:39... [more]
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BLAST of RNA binding protein EWS vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Ewsr11.369e-1137.65Ewing sarcoma breakpoint region 1 [Source:MGI Symb... [more]
Ewsr11.370e-1137.65Ewing sarcoma breakpoint region 1 [Source:MGI Symb... [more]
Ewsr11.391e-1137.65Ewing sarcoma breakpoint region 1 [Source:MGI Symb... [more]
Fus1.048e-1039.53fused in sarcoma [Source:MGI Symbol;Acc:MGI:135363... [more]
Fus1.083e-1039.53fused in sarcoma [Source:MGI Symbol;Acc:MGI:135363... [more]
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BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|Q9AST1|TAF15_ARATH4.631e-1341.67Transcription initiation factor TFIID subunit 15 O... [more]
sp|Q61545|EWS_MOUSE9.586e-1137.65RNA-binding protein EWS OS=Mus musculus OX=10090 G... [more]
sp|Q01844|EWS_HUMAN3.533e-1036.47RNA-binding protein EWS OS=Homo sapiens OX=9606 GN... [more]
sp|Q28009|FUS_BOVIN7.322e-1039.53RNA-binding protein FUS OS=Bos taurus OX=9913 GN=F... [more]
sp|P56959|FUS_MOUSE7.331e-1039.53RNA-binding protein FUS OS=Mus musculus OX=10090 G... [more]
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BLAST of RNA binding protein EWS vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A068YD993.328e-3336.49RNA binding protein EWS OS=Echinococcus multilocul... [more]
A0A0R3S8V53.653e-3339.30Uncharacterized protein OS=Hymenolepis diminuta OX... [more]
A0A068WIE23.765e-3336.49RNA binding protein EWS OS=Echinococcus granulosus... [more]
W6V0304.075e-3235.16RNA-binding protein EWS OS=Echinococcus granulosus... [more]
A0A1S8WYS84.104e-3256.76Uncharacterized protein (Fragment) OS=Opisthorchis... [more]
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BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ewsr1b3.489e-1235.71EWS RNA binding protein 1 [Source:NCBI gene;Acc:10... [more]
ewsr1b3.876e-1235.71EWS RNA binding protein 1 [Source:NCBI gene;Acc:10... [more]
fus2.484e-1140.70FUS RNA binding protein [Source:NCBI gene;Acc:1030... [more]
fus2.522e-1140.70FUS RNA binding protein [Source:NCBI gene;Acc:1030... [more]
taf154.189e-1038.37TAF15 RNA polymerase II, TATA box binding protein ... [more]
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BLAST of RNA binding protein EWS vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RNA binding protein EWS vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1
Match NameE-valueIdentityDescription
CUS24.382e-836.90Putative checkpoint factor in transcription; binds... [more]
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BLAST of RNA binding protein EWS vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO500631.395e-1038.10Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RNA binding protein EWS vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 3
Match NameE-valueIdentityDescription
taf153.689e-1239.53TAF15 RNA polymerase II, TATA box binding protein ... [more]
ewsr1b1.028e-1032.65EWS RNA binding protein 1 [Source:NCBI gene;Acc:10... [more]
ewsr1b1.105e-1032.65EWS RNA binding protein 1 [Source:NCBI gene;Acc:10... [more]
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BLAST of RNA binding protein EWS vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 4
Match NameE-valueIdentityDescription
SMESG000054049.10.000e+099.56SMESG000054049.1[more]
SMESG000054049.10.000e+096.22SMESG000054049.1[more]
SMESG000054049.10.000e+095.80SMESG000054049.1[more]
SMESG000054049.10.000e+094.47SMESG000054049.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029313 ID=SMED30029313|Name=RNA binding protein EWS|organism=Schmidtea mediterranea sexual|type=transcript|length=2067bp
TGGAGAATGTTTGTGAGATTATAAATTATAGTATAATTGACAACTTGATT
TGTTTAAATTTTACAATTAAAGTAGCCATTATTACGTCAGCCATTTTTCT
TATTTATTGATAAATATTTATGCAAACTACTTCTAATACATCATTTCCTT
TTGGTTCATCAACTGATTTGGCAACTCAAAACGCAATAATGCAAGGACTA
GGTTTTAATCCACAAAATATTTCTTCGAGTAATCCTGGTGCCATGAGTGG
TTTTATTCAAAATTCCCAACCTATTGGATATCCCGTCTTCGACCAATCGT
TACAAAATAATTTTCAAACTACTCCGAATGCTCTAAATATGAATCAAATT
AATCCAATGCTTATGCAACAAGGCATGAGCCAACAGTTACAAGGATTTAA
TATGTCTCAAAATCAAATGACATCGCAGTTGCCAATTCAAATGCAGCAAC
AAATGTTTGGAGCAAACGGAAATCCCATTATTCCTTCTTTTGGGGGGGAT
GCCAATCAAATACAGCAGATGAATTCTTATGGTGGGATGAATCCTTTATT
GGCTCAATCTTTACAAGGTGCTCAAATGCAAAATATGTATGGAGGATCTG
ATGCCATGAATATGGCTTTTCAGGGCATGATGTCAGCACAACGCGGTCAA
CTTAGTAATAGTGAGAGGGACAATTACAACTCGAATAATGGTGGTAATCA
TCATAATAGATTACAATTGGGTAATCAAAATGAAGATGGAGCATTGCGTT
TGAATACAGTTTATGTAAGTAATTTGCCACAAAACTTAGATCATGAAATG
CTTAAAAACCAATTCAGTAAATCTGGTTCTATTAAATTGAATTCTAAATC
TGGAATGCCTATGATTTGGATTTTTAAAGATCGAGGTGTTCCTAAAGGAG
ATGCGTTAGTTACTTATGATAGCAATTCTTCAGCTACAAATGCTGTTGCT
TATTTTAAAGATCATGATTTCAATGGCCGTCGTATTGAAGTGCGTATTGC
TACTAATGCTGAAAGACCAATATTAGCTCCACCTTCAAGTGGCCAAAATA
ATGGAGGCATGGATAGACGCGGTGGTGGAAATCAATACAAAATTGAAAGT
ATATCCCGAAACAATGATTATGAAAATGATTCGTATGATTGGCAAAAACG
CGAGGATGGTGGATTTAAACAACGTGATTTCCGCAGCAACAATAATAATG
GTAATAATAGAAATAACGATCGTAATAATCGTGGGCCCGATTGGATTTGT
GCAAAATGCAACAATAATAATTTTTCGTGGCGTGAATCGTGTAATCGTTG
CCAAGAACCTAAAGCCGAAAACGCTATTGAAGTTCATAAACAAGATCGTG
GGCGTGGTTTTAATGGAGGAAGATCTAATAACAGGACAGTTCCAAGGAAT
TCAAATCCTAGAAACGAAGGAGGGCCAATGAGAGGACCAAAGCGTTCTAC
CTCGAGACCTGAGCCATATTAAATTGTACGTTGATTGGAATCTGCTCCAC
GAGGCTGTTTAAACACAAAATTTGCACTTTTAACGTTTTTAAGTATAGTG
GTTGAGAATTTATCTGTCAGTGTTGTTATGTTGATGTAAATATAATTAAA
TTTTGGAAATTTTTACCAGTTTTTTCAAATTATTGATTTTATTAATTTGT
AAGGTTCGAAAAAATATTATCAATTAAATGTCTAGACTGTCAAAATCGAG
ATGTGCTTTTAATGATTTAATTTTTCCATTTTCTGTATTTTTTGGTTAAG
TTTTCACTGACGCCTGTATATCCCGATTTTATACAGAATATTATATGAAT
TCTGGTATTACTAGTAAAATAATTTTTTATGTTCTGTATTTTCTTGATTT
TTATAATTTTCGAAATGCGTCAAGCCTCGGTGGGAGTGTTATAGATTTTT
AAATCTTTTTTTGTAACAGTTTATTGTCGGTTACTTTATATTTCTTATTT
TCACTTTTATAGCACTTTTGTATAGAAACTTTGACAGTTAATGTGATATT
TTTTTGAAATCCATTCTAACATTTATATATTTAAAAATTTTATGGTTAAT
CATAATTTACTATTTAG
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protein sequence of SMED30029313-orf-1

>SMED30029313-orf-1 ID=SMED30029313-orf-1|Name=SMED30029313-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=451bp
MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQ
PIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQM
TSQLPIQMQQQMFGANGNPIIPSFGGDANQIQQMNSYGGMNPLLAQSLQG
AQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNYNSNNGGNHHNRLQL
GNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIW
IFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERP
ILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFK
QRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAE
NAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY
*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0003723RNA binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0046872metal ion binding
Vocabulary: biological process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000020protonephridia
PLANA:0002032epidermal cell
Vocabulary: INTERPRO
TermDefinition
IPR034870TET_fam
IPR036443Znf_RanBP2_sf
IPR035979RBD_domain_sf
IPR001876Znf_RanBP2
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 373..397
e-value: 3.2E-4
score: 30.0
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 374..398
e-value: 2.2E-6
score: 26.9
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 375..394
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 370..400
score: 9.258
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 213..292
e-value: 2.2E-10
score: 50.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 214..289
e-value: 1.1E-7
score: 31.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 212..296
score: 12.953
NoneNo IPR availableGENE3DG3DSA:4.10.1060.10coord: 361..403
e-value: 6.7E-8
score: 33.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 404..450
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 353..367
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 296..317
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..316
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..367
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 212..294
e-value: 9.1E-18
score: 66.3
IPR034870TAF15/EWS/TLS familyPANTHERPTHR23238RNA BINDING PROTEINcoord: 88..440
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILYSSF90209Ran binding protein zinc finger-likecoord: 364..401
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 211..322