RNA binding protein EWS
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30029313 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508]) HSP 1 Score: 65.855 bits (159), Expect = 5.267e-11 Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L ++ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 17 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 101
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508]) HSP 1 Score: 67.0106 bits (162), Expect = 6.124e-11 Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L ++ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 289 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 373
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508]) HSP 1 Score: 67.0106 bits (162), Expect = 6.464e-11 Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L ++ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 323 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 407
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508]) HSP 1 Score: 67.0106 bits (162), Expect = 6.769e-11 Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L ++ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 305 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 389
BLAST of RNA binding protein EWS vs. Ensembl Human
Match: EWSR1 (EWS RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3508]) HSP 1 Score: 67.0106 bits (162), Expect = 7.161e-11 Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L ++ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 360 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 444
BLAST of RNA binding protein EWS vs. Ensembl Celegans
Match: rbm-3.2 (RNA Binding Motif protein homolog [Source:UniProtKB/TrEMBL;Acc:O45713]) HSP 1 Score: 46.2098 bits (108), Expect = 2.827e-6 Identity = 30/86 (34.88%), Postives = 43/86 (50.00%), Query Frame = 3 Query: 756 TVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATN 1007 +VYV N P + L N FS++G++ + I DR G P+G A V + ++A AV F DFNGR + V +A N Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVS--------NVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQN 82
BLAST of RNA binding protein EWS vs. Ensembl Fly
Match: caz (gene:FBgn0285954 transcript:FBtr0334990) HSP 1 Score: 63.5438 bits (153), Expect = 2.635e-10 Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 +T++VS + + + ++ F G IK + ++ P IW++K++ G KG+A VTYD ++A +A+ +F DFNG I+V +A Sbjct: 105 DTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLA 189
BLAST of RNA binding protein EWS vs. Ensembl Fly
Match: caz (gene:FBgn0285954 transcript:FBtr0334991) HSP 1 Score: 63.1586 bits (152), Expect = 2.690e-10 Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 +T++VS + + + ++ F G IK + ++ P IW++K++ G KG+A VTYD ++A +A+ +F DFNG I+V +A Sbjct: 76 DTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLA 160
BLAST of RNA binding protein EWS vs. Ensembl Fly
Match: caz (gene:FBgn0285954 transcript:FBtr0074217) HSP 1 Score: 63.5438 bits (153), Expect = 2.761e-10 Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 +T++VS + + + ++ F G IK + ++ P IW++K++ G KG+A VTYD ++A +A+ +F DFNG I+V +A Sbjct: 120 DTIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTNAAQSAIEWFDGRDFNGNAIKVSLA 204
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: ewsr1a (EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]) HSP 1 Score: 72.4034 bits (176), Expect = 9.986e-13 Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIF--KDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 +T+Y++ L +N E + + F SG I++N ++G+P + I+ KD G PKGDA ++Y+ SA AV +F DF G++++V +A Sbjct: 346 STIYITGLTENATLEEVADFFKHSGIIRINKRTGLPAVNIYTDKDTGKPKGDATLSYEEPPSAKAAVEWFDGKDFQGKKLKVSMA 430
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: taf15 (TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]) HSP 1 Score: 63.929 bits (154), Expect = 5.013e-11 Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 3 Query: 756 TVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 T++V L ++++ + + + F + G IK+N K+G PMI ++ D+ G KG+A V++D SA A+ +F +FNGR I+V AT Sbjct: 42 TIFVQGLGEDVNAQEVGDYFKQIGIIKVNKKTGKPMINLYSDKATGRLKGEATVSFDDPPSAKAAIDWFDGKEFNGRPIKVSFAT 126
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: fus (FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1010]) HSP 1 Score: 66.6254 bits (161), Expect = 5.576e-11 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L + + + + F + G IK+N K+G+PMI ++ DR G KG+A V++D SA A+ +F DFNG I+V AT Sbjct: 288 NTIFVQGLGDDYTVDSVADYFKQIGIIKVNKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 373
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: fus (FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1010]) HSP 1 Score: 66.2402 bits (160), Expect = 6.623e-11 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L + + + + F + G IK+N K+G+PMI ++ DR G KG+A V++D SA A+ +F DFNG I+V AT Sbjct: 285 NTIFVQGLGDDYTVDSVADYFKQIGIIKVNKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 370
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Match: fus (FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1010]) HSP 1 Score: 66.2402 bits (160), Expect = 7.672e-11 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L + + + + F + G IK+N K+G+PMI ++ DR G KG+A V++D SA A+ +F DFNG I+V AT Sbjct: 299 NTIFVQGLGDDYTVDSVADYFKQIGIIKVNKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 384
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:100038234]) HSP 1 Score: 65.0846 bits (157), Expect = 2.281e-10 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L +N+ E + + F + G IK N K+G PMI ++ DR G KG+A V++D SA A+ +F +F+G I+V AT Sbjct: 284 NTIFVQGLGENVTVESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 369
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:100038234]) HSP 1 Score: 65.0846 bits (157), Expect = 2.480e-10 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L +N+ E + + F + G IK N K+G PMI ++ DR G KG+A V++D SA A+ +F +F+G I+V AT Sbjct: 298 NTIFVQGLGENVTVESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 383
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:100038234]) HSP 1 Score: 64.3142 bits (155), Expect = 4.386e-10 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L +N+ E + + F + G IK N K+G PMI ++ DR G KG+A V++D SA A+ +F +F+G I+V AT Sbjct: 298 NTIFVQGLGENVTVESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 383
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: ewsr1 (EWS RNA binding protein 1 [Source:NCBI gene;Acc:394931]) HSP 1 Score: 61.2326 bits (147), Expect = 3.836e-9 Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 +T+YV L N+ E + + F G +K+N ++G P++ +F D+ G PKGD V+++ SA A+ D NG +++V +A Sbjct: 287 STIYVQGLNDNVTVEEIVDFFKHCGDVKINKRTGEPLVNLFMDKETGKPKGDGTVSFEDPPSAKTAIELCDGKDLNGNKVKVSLA 371
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Match: ewsr1 (EWS RNA binding protein 1 [Source:NCBI gene;Acc:394931]) HSP 1 Score: 61.2326 bits (147), Expect = 4.405e-9 Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 +T+YV L N+ E + + F G +K+N ++G P++ +F D+ G PKGD V+++ SA A+ D NG +++V +A Sbjct: 367 STIYVQGLNDNVTVEEIVDFFKHCGDVKINKRTGEPLVNLFMDKETGKPKGDGTVSFEDPPSAKTAIELCDGKDLNGNKVKVSLA 451
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Ewsr1 (Ewing sarcoma breakpoint region 1 [Source:MGI Symbol;Acc:MGI:99960]) HSP 1 Score: 68.9366 bits (167), Expect = 1.369e-11 Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L N+ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 323 SAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 407
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Ewsr1 (Ewing sarcoma breakpoint region 1 [Source:MGI Symbol;Acc:MGI:99960]) HSP 1 Score: 68.9366 bits (167), Expect = 1.370e-11 Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L N+ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 360 SAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 444
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Ewsr1 (Ewing sarcoma breakpoint region 1 [Source:MGI Symbol;Acc:MGI:99960]) HSP 1 Score: 68.9366 bits (167), Expect = 1.391e-11 Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L N+ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 366 SAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 450
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Fus (fused in sarcoma [Source:MGI Symbol;Acc:MGI:1353633]) HSP 1 Score: 65.855 bits (159), Expect = 1.048e-10 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L +N+ E + + F + G IK N K+G PMI ++ DR G KG+A V++D SA A+ +F +F+G I+V AT Sbjct: 278 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 363
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Match: Fus (fused in sarcoma [Source:MGI Symbol;Acc:MGI:1353633]) HSP 1 Score: 65.855 bits (159), Expect = 1.083e-10 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L +N+ E + + F + G IK N K+G PMI ++ DR G KG+A V++D SA A+ +F +F+G I+V AT Sbjct: 277 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 362
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|Q9AST1|TAF15_ARATH (Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.631e-13 Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 3 Query: 756 TVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGV--PKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 +VYVSNLP D ML + F G +K + ++G P +W+++D+ PKGDA VTY+ +A AV +F + DF+G I V +A Sbjct: 9 SVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVTYEDPHAALAAVEWFNNKDFHGNTIGVFMA 92
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|Q61545|EWS_MOUSE (RNA-binding protein EWS OS=Mus musculus OX=10090 GN=Ewsr1 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 9.586e-11 Identity = 32/85 (37.65%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L N+ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 360 SAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 444
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|Q01844|EWS_HUMAN (RNA-binding protein EWS OS=Homo sapiens OX=9606 GN=EWSR1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.533e-10 Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 + +YV L ++ + L + F + G +K+N ++G PMI I+ D+ G PKGDA V+Y+ +A AV +F DF G +++V +A Sbjct: 361 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 445
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|Q28009|FUS_BOVIN (RNA-binding protein FUS OS=Bos taurus OX=9913 GN=FUS PE=2 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 7.322e-10 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L +N+ E + + F + G IK N K+G PMI ++ DR G KG+A V++D SA A+ +F +F+G I+V AT Sbjct: 272 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 357
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Match: sp|P56959|FUS_MOUSE (RNA-binding protein FUS OS=Mus musculus OX=10090 GN=Fus PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.331e-10 Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L +N+ E + + F + G IK N K+G PMI ++ DR G KG+A V++D SA A+ +F +F+G I+V AT Sbjct: 278 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 363
BLAST of RNA binding protein EWS vs. TrEMBL
Match: A0A068YD99 (RNA binding protein EWS OS=Echinococcus multilocularis OX=6211 GN=EmuJ_001020700 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.328e-33 Identity = 77/211 (36.49%), Postives = 116/211 (54.98%), Query Frame = 3 Query: 729 NEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESIS-RNNDYENDSYDWQ--KREDGGFKQRDFRSX----XXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHK 1340 N DG LR +TV+VS LPQN+DHE++K+ F G IK+N+K+GMPMIWIFK+RG+PKGDALVT++ A+ +F +++F G++IEV+ A N++RP++ P SG + +S ++D D Y Q R DG + R NR DW C C NF+ R+ C C P++++ + + + Sbjct: 194 NPDG-LREDTVFVSKLPQNIDHEVMKSHFGTIGKIKMNAKTGMPMIWIFKERGIPKGDALVTFEDPQCVQKAIKWFSENEFLGKKIEVKQAKNSQRPVIIPSGSGGQQHNNSGAASNRPGSLNQLSVGSSDRTVDMYGGQFDPRNDGPLQSRGGGGRPPINAGGMRAIGGPGVNRAGDWCCQSCGRLNFAGRDQCKPCGAPRSDDGMMMSR 403
BLAST of RNA binding protein EWS vs. TrEMBL
Match: A0A0R3S8V5 (Uncharacterized protein OS=Hymenolepis diminuta OX=6216 GN=HDID_LOCUS617 PE=4 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 3.653e-33 Identity = 79/201 (39.30%), Postives = 113/201 (56.22%), Query Frame = 3 Query: 729 NEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXX---XXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAEN 1322 N DG LR +TV+VS LPQN+DHE +K QF G IK+N+KSGMPMIWIFK+RG+PKGDALVT++ A+ YF ++DF G++IEV+ A N++RP++ P SSGQ + G N ++ S N + + R D + R+ + DW C C +F+ R+ CN C P+ ++ Sbjct: 188 NPDG-LREDTVFVSKLPQNIDHETMKVQFGTVGKIKMNAKSGMPMIWIFKERGIPKGDALVTFEDPHCVQKAIKYFSENDFMGKKIEVKQAKNSQRPVIIP-SSGQQQNSAVQGSGRNNIEMSSFGGNQTIDVYGGQFNSRNDVASMPVNVRNPGQMRGIGGMLCPVSSRSNSDWHCQSCGRLHFAGRDQCNPCGAPRPDD 386
BLAST of RNA binding protein EWS vs. TrEMBL
Match: A0A068WIE2 (RNA binding protein EWS OS=Echinococcus granulosus OX=6210 GN=EgrG_001020700 PE=4 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 3.765e-33 Identity = 77/211 (36.49%), Postives = 115/211 (54.50%), Query Frame = 3 Query: 729 NEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESIS-RNNDYENDSYDWQ--KREDGGFKQRDFRSX----XXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHK 1340 N DG LR +TV+VS LPQN+DHE++K+ F G IK+N+K+GMPMIWIFK+RG+PKGDALVT++ A+ +F +++F G++IEV+ A N++RP++ P SG + +S ++D D Y Q R DG + R NR DW C C NF+ R+ C C P+ ++ + + + Sbjct: 194 NPDG-LREDTVFVSKLPQNIDHEVMKSHFGTIGKIKMNAKTGMPMIWIFKERGIPKGDALVTFEDPQCVQKAIKWFSENEFLGKKIEVKQAKNSQRPVIIPSGSGGQQHNNSGAASNRPGSLNQLSVGSSDRTVDMYGGQFDPRNDGPLQSRGGGGRPPINAGGMRAIGGPGVNRAGDWCCQSCGRLNFAGRDQCKPCGAPRPDDGMMMSR 403
BLAST of RNA binding protein EWS vs. TrEMBL
Match: W6V030 (RNA-binding protein EWS OS=Echinococcus granulosus OX=6210 GN=EGR_00721 PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.075e-32 Identity = 77/219 (35.16%), Postives = 114/219 (52.05%), Query Frame = 3 Query: 729 NEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNN---------DYENDSYDWQ--KREDGGFKQRDFRSX----XXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHK 1340 N DG LR +TV+VS LPQN+DHE++K+ F G IK+N+K+GMPMIWIFK+RG+PKGDALVT++ A+ +F +++F G++IEV+ A N++RP++ P SG + +S + D D Y Q R DG + R NR DW C C NF+ R+ C C P+ ++ + + + Sbjct: 194 NPDG-LREDTVFVSKLPQNIDHEVMKSHFGTIGKIKMNAKTGMPMIWIFKERGIPKGDALVTFEDPQCVQKAIKWFSENEFLGKKIEVKQAKNSQRPVIIPSGSGGQQHNNSGAASNRPGSLNQLSVGSSGMTILAGADRTVDMYGGQFDPRNDGPLQSRGGGGRPPINAGGMRAIGGPGVNRAGDWCCQSCGRLNFAGRDQCKPCGAPRPDDGMMMSR 411
BLAST of RNA binding protein EWS vs. TrEMBL
Match: A0A1S8WYS8 (Uncharacterized protein (Fragment) OS=Opisthorchis viverrini OX=6198 GN=X801_04520 PE=4 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.104e-32 Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 3 Query: 714 QLGNQNEDGA--LRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSS 1040 Q G N+ GA LR +TV+VSNLPQ +DHE +K QF G IK+NSKSGMPM+WIFK++GVPKG+ALVTY+ S A+ YF +H+F GR+IEV+ A N++RP++ PP Sbjct: 180 QRGGFNKYGADGLREDTVFVSNLPQTIDHETMKTQFGVIGKIKINSKSGMPMVWIFKEKGVPKGEALVTYEDPQSVQAAIKYFAEHEFLGRKIEVKQAVNSQRPVILPPGG 290
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: ewsr1b (EWS RNA binding protein 1 [Source:NCBI gene;Acc:103029174]) HSP 1 Score: 70.4774 bits (171), Expect = 3.489e-12 Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3 Query: 714 QLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 ++G+Q +D + +T+Y++ L +N + + F +G I++N + G P I I+ DR G PKGDA ++Y+ A AV YF +F GRR++V +A Sbjct: 320 EMGHQEQDDSEN-STIYITGLTENAALPEMADFFKHTGPIRMNRRLGQPAINIYTDRDSGKPKGDATLSYEEPQFARAAVEYFDGKEFQGRRLKVSMA 416
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: ewsr1b (EWS RNA binding protein 1 [Source:NCBI gene;Acc:103029174]) HSP 1 Score: 70.0922 bits (170), Expect = 3.876e-12 Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 3 Query: 714 QLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 ++G+Q +D + +T+Y++ L +N + + F +G I++N + G P I I+ DR G PKGDA ++Y+ A AV YF +F GRR++V +A Sbjct: 315 EMGHQEQDDSEN-STIYITGLTENAALPEMADFFKHTGPIRMNRRLGQPAINIYTDRDSGKPKGDATLSYEEPQFARAAVEYFDGKEFQGRRLKVSMA 411
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:103040960]) HSP 1 Score: 67.3958 bits (163), Expect = 2.484e-11 Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L N + + + F + G IK+N K+G+PMI ++ DR G KG+A V++D SA A+ +F DFNG I+V AT Sbjct: 312 NTIFVQGLGDNYTVDSVADFFKQIGIIKINKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 397
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: fus (FUS RNA binding protein [Source:NCBI gene;Acc:103040960]) HSP 1 Score: 67.3958 bits (163), Expect = 2.522e-11 Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L N + + + F + G IK+N K+G+PMI ++ DR G KG+A V++D SA A+ +F DFNG I+V AT Sbjct: 316 NTIFVQGLGDNYTVDSVADFFKQIGIIKINKKTGLPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFNGNPIKVSFAT 401
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Match: taf15 (TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]) HSP 1 Score: 63.1586 bits (152), Expect = 4.189e-10 Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L +++ + + + F + G IK+N K+G PMI ++ D+ G KG+A V++D SA A+ +F D +FNG+ I+V AT Sbjct: 223 NTIFVQGLGEDVSTQEVSDYFKQIGIIKVNKKTGKPMINLYTDKATGRLKGEATVSFDDPPSAKAAIDWF-DKEFNGKPIKVSFAT 307
BLAST of RNA binding protein EWS vs. Ensembl Yeast
Match: CUS2 (Putative checkpoint factor in transcription; binds to U2 snRNA and Prp11p; regulates toggling of the U2 snRNA stem II region between different structures; contains two RNA recognition motifs (RRMs) [Source:SGD;Acc:S000005230]) HSP 1 Score: 53.1434 bits (126), Expect = 4.382e-8 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 3 Query: 756 TVYVSNLPQN-LDHEMLKNQFSKSGSIKLNSKSGMPMIWIF-KDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 ++Y+S LP + E L QF K G I+ N + G P+ ++ D+G KGDAL+TY S T A+ + F G++I V A Sbjct: 46 SIYISGLPTDKTTKEGLTEQFCKYGMIRTN-RDGEPLCKLYVNDKGAFKGDALITYSKEESVTLAIEMMNESIFLGKQIRVERA 128
BLAST of RNA binding protein EWS vs. Ensembl Nematostella
Match: EDO50063 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RF99]) HSP 1 Score: 63.5438 bits (153), Expect = 1.395e-10 Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKD-RGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 +T++VSN+ N E +K F G IK++ K P IWI+K G KG+ VTY+ +A+ A+ +F DF G+ I+V +A Sbjct: 220 DTIFVSNMSPNSTEEDIKGLFGSIGIIKIDKKLQKPKIWIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFMGQSIKVELA 303
BLAST of RNA binding protein EWS vs. Ensembl Medaka
Match: taf15 (TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]) HSP 1 Score: 68.1662 bits (165), Expect = 3.689e-12 Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 3 Query: 753 NTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIAT 1004 NT++V L ++ + + + F + G IK+N K+G PMI I+ D+ G PKG+A V++D SA A+ +F +FNG+ I+V AT Sbjct: 66 NTIFVQGLGEDATVQEVGDYFKQIGIIKVNKKTGQPMINIYSDKATGRPKGEATVSFDDPPSAKAAIDWFDGKEFNGKPIKVSFAT 151
BLAST of RNA binding protein EWS vs. Ensembl Medaka
Match: ewsr1b (EWS RNA binding protein 1 [Source:NCBI gene;Acc:101163744]) HSP 1 Score: 65.4698 bits (158), Expect = 1.028e-10 Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 3 Query: 714 QLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 ++G E +T+Y++ L + + E + F G I++N + G P I I+ D+ G PKGDA ++Y+ A AV +F +F GRR++V +A Sbjct: 304 EMGRPEEQDDSENSTIYITGLTEKANLEEMAEFFKHVGPIRMNRRLGQPAINIYTDKESGKPKGDATLSYEEPICAKAAVEHFDGKEFQGRRLKVSMA 401
BLAST of RNA binding protein EWS vs. Ensembl Medaka
Match: ewsr1b (EWS RNA binding protein 1 [Source:NCBI gene;Acc:101163744]) HSP 1 Score: 65.4698 bits (158), Expect = 1.105e-10 Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 3 Query: 714 QLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDR--GVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIA 1001 ++G E +T+Y++ L + + E + F G I++N + G P I I+ D+ G PKGDA ++Y+ A AV +F +F GRR++V +A Sbjct: 305 EMGRPEEQDDSENSTIYITGLTEKANLEEMAEFFKHVGPIRMNRRLGQPAINIYTDKESGKPKGDATLSYEEPICAKAAVEHFDGKEFQGRRLKVSMA 402
BLAST of RNA binding protein EWS vs. Planmine SMEST
Match: SMESG000054049.1 (SMESG000054049.1) HSP 1 Score: 751.125 bits (1938), Expect = 0.000e+0 Identity = 450/452 (99.56%), Postives = 450/452 (99.56%), Query Frame = 3 Query: 120 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPXXXXXXXXXXXXXFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG--DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDXXXXXXXXXXXXRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDXXXXXXXXXXXXXTVPRNSNPRNEGGPMRGPKRSTSRPEPY 1469 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNYNSNNGGNHHNRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY Sbjct: 1 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGVWDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNYNSNNGGNHHNRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY 452
BLAST of RNA binding protein EWS vs. Planmine SMEST
Match: SMESG000054049.1 (SMESG000054049.1) HSP 1 Score: 735.717 bits (1898), Expect = 0.000e+0 Identity = 433/450 (96.22%), Postives = 433/450 (96.22%), Query Frame = 3 Query: 120 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPXXXXXXXXXXXXXFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDXXXXXXXXXXXXRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDXXXXXXXXXXXXXTVPRNSNPRNEGGPMRGPKRSTSRPEPY 1469 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY N N DGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY Sbjct: 1 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY---------------NSNNDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY 435
BLAST of RNA binding protein EWS vs. Planmine SMEST
Match: SMESG000054049.1 (SMESG000054049.1) HSP 1 Score: 730.709 bits (1885), Expect = 0.000e+0 Identity = 433/452 (95.80%), Postives = 433/452 (95.80%), Query Frame = 3 Query: 120 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPXXXXXXXXXXXXXFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG--DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDXXXXXXXXXXXXRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDXXXXXXXXXXXXXTVPRNSNPRNEGGPMRGPKRSTSRPEPY 1469 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY N N DGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY Sbjct: 1 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGVWDANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY---------------NSNNDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY 437
BLAST of RNA binding protein EWS vs. Planmine SMEST
Match: SMESG000054049.1 (SMESG000054049.1) HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0 Identity = 427/452 (94.47%), Postives = 428/452 (94.69%), Query Frame = 3 Query: 120 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPXXXXXXXXXXXXXFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG--DANQIQQMNSYGGMNPLLAQSLQGAQMQNMYGGSDAMNMAFQGMMSAQRGQLSNSERDXXXXXXXXXXXXRLQLGNQNEDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSXXXXXXXXXXXXXXXYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSXXXXXXXXXXXXXXXXPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDXXXXXXXXXXXXXTVPRNSNPRNEGGPMRGPKRSTSRPEPY 1469 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGG DANQIQQMNSYGGMNPLLAQSLQ +MYGGSDAMNMAFQGMMSAQRGQLSNSERDNY N N DGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY Sbjct: 1 MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQPIGYPVFDQSLQNNFQTTPNALNMNQINPMLMQQGMSQQLQGFNMSQNQMTSQLPIQMQQQMFGANGNPIIPSFGGVWDANQIQQMNSYGGMNPLLAQSLQ-----DMYGGSDAMNMAFQGMMSAQRGQLSNSERDNY---------------NSNNDGALRLNTVYVSNLPQNLDHEMLKNQFSKSGSIKLNSKSGMPMIWIFKDRGVPKGDALVTYDSNSSATNAVAYFKDHDFNGRRIEVRIATNAERPILAPPSSGQNNGGMDRRGGGNQYKIESISRNNDYENDSYDWQKREDGGFKQRDFRSNNNNGNNRNNDRNNRGPDWICAKCNNNNFSWRESCNRCQEPKAENAIEVHKQDRGRGFNGGRSNNRTVPRNSNPRNEGGPMRGPKRSTSRPEPY 432 The following BLAST results are available for this feature:
BLAST of RNA binding protein EWS vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of RNA binding protein EWS vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 1
BLAST of RNA binding protein EWS vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 3
BLAST of RNA binding protein EWS vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of RNA binding protein EWS vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of RNA binding protein EWS vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of RNA binding protein EWS vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of RNA binding protein EWS vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of RNA binding protein EWS vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of RNA binding protein EWS vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of RNA binding protein EWS vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 1
BLAST of RNA binding protein EWS vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of RNA binding protein EWS vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of RNA binding protein EWS vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 4
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30029313 ID=SMED30029313|Name=RNA binding protein EWS|organism=Schmidtea mediterranea sexual|type=transcript|length=2067bpback to top protein sequence of SMED30029313-orf-1 >SMED30029313-orf-1 ID=SMED30029313-orf-1|Name=SMED30029313-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=451bp MQTTSNTSFPFGSSTDLATQNAIMQGLGFNPQNISSSNPGAMSGFIQNSQback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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