G_PROTEIN_RECEP_F1_2 domain-containing protein

Overview
NameG_PROTEIN_RECEP_F1_2 domain-containing protein
Smed IDSMED30029286
Length (bp)1067
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30029286) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for G_PROTEIN_RECEP_F1_2 domain-containing protein (SMED30029286) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30029286

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymaSMED30029286SMESG000037130.1 dd_Smed_v4_51254_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A1I8IJQ6 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.781e-33
Identity = 98/302 (32.45%), Postives = 162/302 (53.64%), Query Frame = 1
Query:   79 VLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVIFEIXXXXXXXXXXXXXXXXXXIKICENLQGIVLTEK---FLAKYR--------FFHYFQI----YGIFMFQSCIPVLVTVIATVIIWV-----CLQQASSIGRGGSNMEIHKHSHSVRTNTTGLVLVFSIVFCLLQIPTFIATCITTFRSS--HLYTIHPDIFSNTFCILGSLLNFFVYAASS 918
            V+LP+ ++ +LANSLS ++F  Q FDN+AVRF+LLSIS  EI  Q  ++ E  +V    E     ++++  ++TH  IN+ + +RNW V+L++ +RCEV++ PL++R  + F+ +R  I     + ++ +L+ L +L  L  +C N   ++  E     LA  +           Y Q+    + I++FQ+ IP ++    T+ +W+      L++A +  R                  + +VL  +I+FC+ +IPTFI+T I            IHPD  +N   +  SLLNFFVYAASS
Sbjct:  845 VILPIALIALLANSLSLFVFSRQKFDNRAVRFSLLSISSTEICLQCALLTETGIVLSNFEHWHSAFTYVFTTVTHVAINALVSIRNWNVLLISAARCEVIVRPLASRRFLFFNRFRLAIAFALVICTALALALLAHLGGLGVLCTNSDELLSFENDAAVLAPDKAPGDAVIVMRPYLQMDLLPWAIYVFQALIPTVLIPFPTITMWLRIRKNRLERADTTRRSCGGCGGSDSGPLSSLRASQMVLGLAILFCIFEIPTFISTTILQHNPDLPEKLPIHPDSVTNVLLVTDSLLNFFVYAASS 1146          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A1I8IXK0 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.446e-18
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   79 VLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYR 426
            V+LP+ ++ +L NSLS ++F  Q FDNKAVRF+LLSIS  E+  QL +I E  +V    E      +F + S  H  IN+ + +RNW ++L++ +RCEVV  PL++R  +IFS  R
Sbjct:  496 VILPISLVALLLNSLSLFVFARQKFDNKAVRFSLLSISSTEVCLQLALISEIAIVKSYFEHRHSPAAFAVTSCIHVAINALVSIRNWNLLLISAARCEVVARPLASRRCLIFSRGR 611          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A1I8GXA6 (Uncharacterized protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.786e-18
Identity = 49/120 (40.83%), Postives = 79/120 (65.83%), Query Frame = 1
Query:   70 MLTVLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTR-NRMIFSHYR 426
            ML  + P+ +L + AN+LS ++F  Q +DN+A+R  L+S+SV E++ Q  I++EA LVF GV+      S+ + SL    IN+   +RNW +V+L+LSRCE+V  P+ +R  ++IF+  R
Sbjct:  359 MLACICPISLLALCANALSLFVFLRQRWDNRAIRLVLVSVSVWEVMLQSAILLEAVLVFSGVKHSHSPASYAITSLLQVCINAATAVRNWNMVVLSLSRCELVWYPIPSRGQQLIFTMRR 478          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: A0A1I8H5C8 (G_PROTEIN_RECEP_F1_2 domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.361e-12
Identity = 45/122 (36.89%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   70 MLTVLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVI 435
            ML  + P+ +  + AN LSF +F  Q FDN A+R  L+S+S  E+  Q  +I E  +   G +    + S++  S    GI +   +RNW +V+L++SRCE+V  PL++R R+ FS  R  I
Sbjct:   36 MLASVFPISLAALAANLLSFAVFVRQKFDNPAIRLVLVSVSFWEVFLQSAVICEVVMSLSGAKHAHTKASYVATSAFRLGIGAAAFVRNWNMVVLSVSRCELVWRPLASRGRLFFSPRRLKI 157          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Match: H2KR47 (Rhodopsin-like orphan GPCR OS=Clonorchis sinensis OX=79923 GN=CLF_105432 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.705e-10
Identity = 74/297 (24.92%), Postives = 139/297 (46.80%), Query Frame = 1
Query:  115 NSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVF----IGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVIFEIXXXXXXXXXXXXXXXXXXIKICE---NLQGIVLTEKFLAKYRFFHYFQIYGIFMFQSCIPVLVTVIATVII------WVCLQ--QASSIGRGGSNMEIHKHSHSVRTNTTGLVLVFSIVFCLLQIPTFI------ATCITTFRSSHLYTIH-PDIFSNTFCILGSLLNFFVYAASSKRFRSSL 939
            N+    IF  Q+     +R +LL +S  E++  LF  ++  +      I +E      + +M +L ++G ++FIC RNW  VL+T +R EV++ PL  R+R  F+   TV+  +  +T +  L+ +        IC    N + + L    L       +++ YG F++Q  +P+L+ +  + II      W   +  +AS+I R        +H    + N T  VL+ ++ F   Q+P+F+       T I +  +  ++        ++T  +L S++N  +Y+     FR+ L
Sbjct:   47 NATCMSIFAQQN-RQSVMRISLLLLSATEVVFHLFFCLDYAMRIAVCSIPIEKPTI-MTTVMSALINFGGDAFICARNWCNVLITAARTEVIVFPL--RSRRYFTRRSTVLIYVFLLTLACMLASVRAFFDQAGICHVGNNTESLNLEILPLMPSHVIKHYEAYGYFIYQIILPILLVLTMSTIICTYVSPWCQAEILEASTIRR--------RH----QMNATRTVLIIALTFLSFQMPSFVFVILHNYTGIISQETDSVFRFKIAQALADTLIVLDSVINILIYSFKIPGFRNQL 327          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000037130.1 (SMESG000037130.1)

HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 1
Query:   70 MLTVLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVIFEIXXXXXXXXXXXXXXXXXXIKICENLQGIVLTEKFLAKYRFFHYFQIYGIFMFQSCIPVLVTVIATVIIWVCLQQASSIGRGGSNMEIHKHSHSVRTNTTGLVLVFSIVFCLLQIPTFIATCITTFRSSHLYTIHPDIFSNTFCILGSLLNFFVYAASSKRFRSSLKAILISSERVQLSDQFYNNLTTVINDRMRKSSDRSVMLQTP 1062
            MLTVLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVIFEISFVTSSFSLSFLNNLRFLIKICENLQGIVLTEKFLAKYRFFHYFQIYGIFMFQSCIPVLVTVIATVIIWVCLQQASSIGRGGSNMEIHKHSHSVRTNTTGLVLVFSIVFCLLQIPTFIATCITTFRSSHLYTIHPDIFSNTFCILGSLLNFFVYAASSKRFRSSLKAILISSERVQLSDQFYNNLTTVINDRMRKSSDRSVMLQTP
Sbjct:    1 MLTVLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVIFEISFVTSSFSLSFLNNLRFLIKICENLQGIVLTEKFLAKYRFFHYFQIYGIFMFQSCIPVLVTVIATVIIWVCLQQASSIGRGGSNMEIHKHSHSVRTNTTGLVLVFSIVFCLLQIPTFIATCITTFRSSHLYTIHPDIFSNTFCILGSLLNFFVYAASSKRFRSSLKAILISSERVQLSDQFYNNLTTVINDRMRKSSDRSVMLQTP 331          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000052331.1 (SMESG000052331.1)

HSP 1 Score: 231.491 bits (589), Expect = 1.736e-72
Identity = 150/366 (40.98%), Postives = 207/366 (56.56%), Query Frame = 1
Query:    1 NSCT-NFTRSS-DPHVIRYKVQVWYMLTVLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRW-SFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVIFEIXXXXXXXXXXXXXXXXXXIKICENLQGIVLTEKFLAKYRFFHYFQIYGIFMFQSCIPVLVTVIATVIIWVCLQQASS----IGRGG---------SNMEIHKHSH-------------------------------------SVRTNTTGLVLVFSIVFCLLQIPTFIATCITTFRSSHLYTIHPDIFSNTFCILGSLLNFFVYAASSKRFRSSL 939
            NSC+ N T ++ D  V+RYK Q WY++  +LP+ VL  LANS+S  IF  Q FDN AV+FNL+SISV+EI+ QL ++ E  +V  GVE+V ++W   L  S+ H  +N+   +RNW VVL++++RCEVVI+PLS R R+IF+     I     V  S  L+ LN L+    IC NL  +V  + FL ++  + YF IYGIFMFQSC+PV+   I+T II   L++       + +G          S  +I K S                                        R  T+ LVL  S++FCLLQIPTFI TC+  F  +  + IHPD+FSN+  ++ S LNFFVYAASSK+FR S+
Sbjct:    8 NSCSENLTNATVDELVLRYKTQEWYLMLAILPISVLAFLANSISLIIFSKQYFDNSAVKFNLVSISVSEIVLQLVVVSEVIIVLGGVENV-WKWREMLTTSVIHMSLNAMFSIRNWNVVLISVARCEVVISPLSLRGRLIFNKIVLRILTTLIVVISVVLACLNILKDKGIICVNLDWVVTIDGFLNQFDAYSYFDIYGIFMFQSCLPVIFICISTFIIGFKLRETPMKNKLLSKGPFLYKDCGKVSKPKIPKSSRFYNKGFFKSKFQLLQPNAKATSDENRKGKLISSISLIKNRIRTSYLVLFLSLMFCLLQIPTFIITCVLRFHPNLDFEIHPDVFSNSLLVIDSFLNFFVYAASSKKFRYSV 372          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000072341.1 (SMESG000072341.1)

HSP 1 Score: 226.483 bits (576), Expect = 4.489e-71
Identity = 133/367 (36.24%), Postives = 209/367 (56.95%), Query Frame = 1
Query:    1 NSC----TNFTRSSDPHVIRYKVQVWYMLTVLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSH--YRTVIFEIXXXXXXXXXXXXXXXXXXIKICENLQGIVLTEKFLAKYRFFHYFQIYGIFMFQSCIPVLVTVIATVIIWVCLQQASSI------------------------GRGGSNMEIHKHSHSV-----RTNTTGLVLVFSIVFCLLQIPTFIATCITTFRSSHLYTIHPDIFSNTFCILGSLLNFFVYAASSKRFRSSLKAILISSERVQLSDQFYNN 996
            NSC    TNF  +    +  Y++Q WY++TV+LP+  +  + N LS  +F+ Q FDN AV FNL++IS+ E++ Q+ +I E+  +  G+E   ++ + L  SL H  +N+   +RNWTVVL+++SRCEVV+ PLS R R+  +    +TV+  +  ++   S+     L+ +  +C NL   +     L+ Y F+ +  ++G+F+FQSCIPV++ ++AT ++W  L Q  ++                              +E++  S  +     R NTT +V++ S VF LLQ+PTFI TC T      LY IHPDIF+N   +LGS+LN FVYAASSKRFR +LK+ +I+S+      + Y N
Sbjct:    8 NSCFVNLTNFNLTDSQKL--YRIQEWYLMTVILPLSFIAGIVNGLSLLVFFRQVFDNSAVHFNLMAISLVEVVLQIVVICESIFIITGIERYHYKTASLATSLIHITLNAMFSIRNWTVVLISVSRCEVVLRPLSLRKRLFLNSRCLKTVLGSLILISFGLSILKALRLKGI--VCINLSERLTRRYLLSIYPFYQHIIVHGMFLFQSCIPVILIMLATGVMWYKLHQCKAMFASEKKVKIDLAEKTLRQQKIKEYNEKTKPVELNARSRGMISSKSRNNTTQMVMILSFVFGLLQLPTFIITCFTMIVKHRLYLIHPDIFANCLLVLGSILNVFVYAASSKRFRLNLKS-MINSKHTTYQSRSYQN 369          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000008581.1 (SMESG000008581.1)

HSP 1 Score: 161.77 bits (408), Expect = 2.709e-46
Identity = 107/340 (31.47%), Postives = 189/340 (55.59%), Query Frame = 1
Query:   28 SDPHVIRYKVQVWYMLTVLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVI-FEIXXXXXXXXXXXXXXXXXXIKICENLQGIVLTEKFLAKYRFFHYFQIYGIFMFQSCIPVLVTVIATVIIWVCLQQAS-SIGRGGSNMEI--------------HKHSHSVRTN---------------TTGLVLVFSIVFCLLQIPTFIATCITTFRSSHLYTIHPDIFSNTFCILGSLLNFFVYAASSKRFRSSLKAILI 954
            SD ++ RY  Q +YM+  L+PV +L    N   F +F  Q FDN  ++ NL  ++++E+   + + +EA +V   +E     ++ ++ S  H  +NS   +RNW VVL+ ++RCE+V  P+   ++  F + + +   E+  V  S   + +NNL +  KIC+N+   V+++  L   ++   F+IYG+FM Q+CIPV V  + ++ I+  +++A+ ++G+  +  ++              + H  SVR +               T  ++L FS+VFC+ Q+PTF+ TC++ F  S  + IHPDIFSN F +L SL++  +YA SS++FR + K  L+
Sbjct:   21 SDNNIYRY--QEYYMMISLIPVIILAFSLNLFCFIVFTLQLFDNHMIQLNLKLVAISEMYLLVIVFLEAVIVLSNIEYQHAYYTEIVTSFIHILVNSAFTIRNWNVVLICMARCEMVGRPIHKLHQNRFFNVKCLKSIEVVIVVVSMMFALVNNLEYQGKICQNVNNFVISQLSLFSGKWVDNFKIYGMFMIQNCIPVFVITMGSIFIYRRMKRATDNLGKCETVEKLTPKEEHPCRNYVIKYTHQKSVRESIRSWHSPSTIHNAYVTNYMILFFSLVFCIFQLPTFLITCLSIFYDSWNFIIHPDIFSNLFNLLDSLIDVIIYAMSSRKFRKTSKRFLM 358          
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Match: SMESG000021883.1 (SMESG000021883.1)

HSP 1 Score: 149.828 bits (377), Expect = 1.723e-41
Identity = 108/358 (30.17%), Postives = 182/358 (50.84%), Query Frame = 1
Query:    1 NSCTNFTRSSDPHVIRYKVQVWYMLTVLLPVCVLGVLANSLSFWIFWHQSFDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLTHWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVIFEIXXXXXXXXXXXXXXXXXXIKICENLQGIVLTEKFLAKYRFFH-YFQIYGIFMFQSCIPVLVTVIATVIIWVCLQQASS--------------------------------------IGRGGSNMEIH---------KHSHSVRTNTTGLVLVFSIVFCLLQIPTFIATCITTFRSSHLYTIHPDIFSNTFCILGSLLNFFVYAASSKRFR 930
            N+C+ + +SS    ++Y  Q + M+ +L P+ V+ ++ N+    +F  Q FDN AV+F+L++ +++EI   L ++ ++C+V   ++      SFL+    H  +NS   +RNW VV++ +SR E++  P +T  + IFS    V  E+  V  S   S +NN      IC N    V       ++  +H Y+Q+Y +FMFQ+ +P+ + ++A+  I++ L   +                                       +   G+N   +         KH  + RT TT +VL FS++FC+ Q PTFI +C+  +R S  ++IHPD+FSN F +L SL N F+YA SS +FR
Sbjct:    8 NNCSFYNQSSWHGSVKYINQEYLMMCILSPIIVIAMVLNTFCLLVFRIQIFDNVAVKFSLITTAISEIALLLAVLCKSCMVITKMDHEHTIGSFLISGWIHIFLNSSFSIRNWNVVIIAISRLEIICRPFATYFKPIFSTVFLVRLEVIMVLLSIGFSVVNNSNKKGVICSNRNNSVQLLLTFPQFGNWHEYYQVYVMFMFQTFVPMSIILLASFGIFLKLNSGNELKIPQFNAQKVQTKPEVNSALEKLISKNPDSLIPIKAMLKTSGANCRRNIQMKRNSNLKHVRNRRT-TTYMVLFFSLIFCIFQFPTFIISCMFLYRKSWKFSIHPDVFSNCFNLLDSLSNVFIYALSSSQFR 364          
The following BLAST results are available for this feature:
BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1I8IJQ61.781e-3332.45G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
A0A1I8IXK01.446e-1843.97Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8GXA61.786e-1840.83Uncharacterized protein OS=Macrostomum lignano OX=... [more]
A0A1I8H5C81.361e-1236.89G_PROTEIN_RECEP_F1_2 domain-containing protein OS=... [more]
H2KR477.705e-1024.92Rhodopsin-like orphan GPCR OS=Clonorchis sinensis ... [more]
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of G_PROTEIN_RECEP_F1_2 domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000037130.10.000e+0100.00SMESG000037130.1[more]
SMESG000052331.11.736e-7240.98SMESG000052331.1[more]
SMESG000072341.14.489e-7136.24SMESG000072341.1[more]
SMESG000008581.12.709e-4631.47SMESG000008581.1[more]
SMESG000021883.11.723e-4130.17SMESG000021883.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029286 ID=SMED30029286|Name=G_PROTEIN_RECEP_F1_2 domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1067bp
AATTCGTGCACCAACTTCACCCGGTCGAGTGACCCTCACGTTATCCGGTA
CAAAGTGCAGGTCTGGTACATGCTCACTGTTCTTCTACCGGTTTGTGTCC
TTGGAGTTCTGGCAAATTCGTTGTCATTCTGGATATTTTGGCATCAATCA
TTCGATAATAAAGCGGTTCGGTTCAACTTGCTGTCAATTAGTGTGGCGGA
GATTCTCACTCAACTCTTTATCATTATTGAGGCCTGTCTGGTGTTTATTG
GAGTGGAGGATGTGAAATTCCGGTGGAGTTTCCTCATGAAATCGCTGACC
CATTGGGGAATCAACAGTTTCATTTGTATGCGAAACTGGACAGTCGTTTT
GTTAACCTTGTCTCGGTGCGAGGTGGTGATAAATCCCCTCTCTACAAGGA
ATAGGATGATATTTAGTCATTACCGAACCGTCATTTTTGAGATCTCTTTT
GTCACTTCGTCATTTTCATTGTCATTTTTAAACAACTTACGATTTCTAAT
CAAGATTTGTGAAAACCTTCAAGGAATCGTCTTGACGGAAAAGTTCCTTG
CAAAATATCGTTTCTTTCATTATTTTCAAATCTATGGGATTTTTATGTTT
CAGTCGTGCATCCCGGTCCTGGTTACGGTCATAGCGACCGTCATAATCTG
GGTTTGTCTGCAGCAGGCCTCATCAATCGGTAGGGGCGGCTCAAATATGG
AAATTCACAAGCATTCTCATTCGGTCAGAACAAACACAACAGGACTCGTT
CTAGTCTTTTCTATAGTATTCTGCCTCCTGCAAATTCCTACCTTTATCGC
TACGTGTATTACAACGTTTCGATCTTCACATCTCTACACGATTCATCCTG
ACATATTCTCCAACACTTTTTGCATATTGGGATCCTTGCTGAATTTCTTT
GTTTATGCCGCTAGTAGTAAAAGGTTCCGATCATCATTGAAGGCCATTTT
GATAAGCAGTGAGAGAGTTCAGCTATCGGATCAGTTCTACAACAACCTCA
CGACTGTGATTAATGACCGCATGAGAAAGTCCTCCGACAGGTCAGTCATG
TTGCAAACCCCAGATCG
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protein sequence of SMED30029286-orf-1

>SMED30029286-orf-1 ID=SMED30029286-orf-1|Name=SMED30029286-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=355bp
NSCTNFTRSSDPHVIRYKVQVWYMLTVLLPVCVLGVLANSLSFWIFWHQS
FDNKAVRFNLLSISVAEILTQLFIIIEACLVFIGVEDVKFRWSFLMKSLT
HWGINSFICMRNWTVVLLTLSRCEVVINPLSTRNRMIFSHYRTVIFEISF
VTSSFSLSFLNNLRFLIKICENLQGIVLTEKFLAKYRFFHYFQIYGIFMF
QSCIPVLVTVIATVIIWVCLQQASSIGRGGSNMEIHKHSHSVRTNTTGLV
LVFSIVFCLLQIPTFIATCITTFRSSHLYTIHPDIFSNTFCILGSLLNFF
VYAASSKRFRSSLKAILISSERVQLSDQFYNNLTTVINDRMRKSSDRSVM
LQTPD
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0046854phosphatidylinositol phosphorylation
GO:0046855inositol phosphate dephosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR0194277TM_GPCR_serpentine_rcpt_Srw
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: molecular function
TermDefinition
GO:0008528G-protein coupled peptide receptor activity
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0194277TM GPCR, serpentine receptor class w (Srw)PFAMPF103247TM_GPCR_Srwcoord: 31..317
e-value: 2.3E-7
score: 30.4
NoneNo IPR availableGENE3DG3DSA:1.20.1070.10coord: 10..323
e-value: 2.4E-24
score: 87.8
NoneNo IPR availablePANTHERPTHR45695FAMILY NOT NAMEDcoord: 22..340
NoneNo IPR availableCDDcd149787tmA_FMRFamide_R-likecoord: 22..313
e-value: 1.91814E-15
score: 73.8212
NoneNo IPR availableSUPERFAMILYSSF81321Family A G protein-coupled receptor-likecoord: 19..319
NoneNo IPR availableTMHMMTMhelixcoord: 248..270
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 138..160
NoneNo IPR availableTMHMMTMhelixcoord: 197..219
NoneNo IPR availableTMHMMTMhelixcoord: 285..304
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 38..302
score: 13.611