Rho_N domain-containing protein

Overview
NameRho_N domain-containing protein
Smed IDSMED30029260
Length (bp)1613
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Rho_N domain-containing protein (SMED30029260) t-SNE clustered cells

Violin plots show distribution of expression levels for Rho_N domain-containing protein (SMED30029260) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Rho_N domain-containing protein (SMED30029260) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Rho_N domain-containing protein (SMED30029260) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30029260

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
head regionSMED30029260 SmedASXL_016448SmedAsxl_ww_GCZZ01PMID:27034770
Currie et al., 2016		whole organism asexual adult RNA-sequencing evidence
prepharyngeal regionSMED30029260 dd_Smed_v6_23809_0_1dd_Smed_v6PMID:28171748
Stückemann et al., 2017		whole organism asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Celegans
Match: ZC53.4 (pep chromosome:WBcel235:X:1925750:1937689:1 gene:WBGene00022511.1 transcript:ZC53.4.1 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ZC53.4)

HSP 1 Score: 98.5969 bits (244), Expect = 3.405e-21
Identity = 86/355 (24.23%), Postives = 163/355 (45.92%), Query Frame = 2 
Query:  317 IVRAKGIYPYDFVTSLKVLESNYELP---PIWSSVSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIITKEIAYNGLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGI-------TFVNKYYAASSEDTEL----LYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPY---------SYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQI-----CAQTLHVSCIEICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSI 1297
            ++R KG+YPY+++ S K  +   +LP     +  +++ +          +N R +           LR+         L+P  ++  PG++  + L   +  ++ L D+ MY   E GIRGGI       + VN  Y  +  + +L    LY+D NNL GWA+ Q LP  +F +  ++L ++L+       +L  Y             E+D++ P  +H+  ND P+ P+ +   N  ++KL  T + ++ +V+++  L   ++LG  +  IHR I FK++  L + I++                 ++  N +    M N+    ++R+ +R     +K+    SKP F++ I
Sbjct: 1074 LMRKKGVYPYEYMDSFKRFDKT-KLPNRDKFYDKLNNKKCKRKGIADVFENFRAL----------SLRVYQ-------LDPCWYFTSPGLAWDAMLKKTKVELDKLHDVEMYLMIEKGIRGGIVNAVKRYSKVNNKYTKNFNEKQLTNFLLYLDANNLYGWAMCQMLPTGDFKFETQSLISILNGEAEVKSDLKDYINYLKKLDRGCIFEVDLEYPKEIHSRHNDSPLCPENVKIDNHVIKKLCNTLFDREKYVIHYENLLQCLQLGLKLKKIHRIITFKESNWLASYIEMNTNPRKNAKNDFEKDFYKLMNNSVFGKTMENV----RERVDVRLVTDEDKIKKLASKPNFKRRI 1406
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: A0A2L2YKB9 (Uncharacterized protein (Fragment) OS=Parasteatoda tepidariorum OX=114398 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.376e-49
Identity = 142/460 (30.87%), Postives = 227/460 (49.35%), Query Frame = 2 
Query:  311 GIIVRAKGIYPYDFVTSLKVLESNYELPPIW--------SSVSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIITKEIAYN---------GLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFVNKYYA-----------ASSEDTELLYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQICAQTLHVSCIE-----ICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELA-KYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNYDPVHP 1588
             +I+R KG++PYD++       S   LPP            ++DDEYA A EI    N  T+ DY+  YLK D+ ++  +I  N          L+P  +Y  PG+S  + L   +  IE+ QD  M  F E G RGGI+  +K YA           +S  D  ++Y+D NNL GWA+SQ LP  NF WV     ++ ++    N +     Y +E+D+  PD LH+  +D P AP+   PP+   ++LM T W KK +V+++R L   +K G  V  +HR ++F Q P LK  I +    ++L  +  E     +  N +    M N+    +KR+ +R C++ +K     +KP F       + L+A H+ +  +  ++P  I  S+LD+SK+ +Y      +  KY E L    +++ +DTDSF   +    +   +   I +   DTS+Y   +P
Sbjct:  116 SLILR-KGVFPYDYIVDHSKF-SERSLPPKECFFNKLNEEPITDDEYAYACEIWNTFNFTTLGDYSDHYLKTDVLLLV-DIFQNFRKVCMGTYSLDPAWYYTSPGLSWDAMLKITKIEIEIFQDYDMLLFVEKGTRGGISQCSKRYARANNKFMIDYDSSKPDNYIMYLDANNLYGWAMSQPLPLKNFKWVDPQTVDI-TQISDDNSQ----GYILEVDLLYPDTLHDAHSDLPFAPETALPPDCTEKRLMTTFWEKKGYVIHYRNLKQCLKFGLEVKKVHRVLQFDQAPFLKPYIDLNTQKRSLSKNDFEKSFYKLMNNSIFGKTMENI----RKRVDVRLCSNGKKAEKLIAKPNFHDRTIFSENLVAFHMQKTHLVFNKPIAIGMSILDISKILMYSFHYENMKPKYGENL----HLLYMDTDSFVYSIETSNIYEDIKNDISH--YDTSDYPANNP 557
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: A0A4Y2PKA1 (Uncharacterized protein OS=Araneus ventricosus OX=182803 GN=AVEN_114505_1 PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 7.776e-49
Identity = 131/457 (28.67%), Postives = 236/457 (51.64%), Query Frame = 2 
Query:  317 IVRAKGIYPYDFVTSLKVLESNYELPPIW--------SSVSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIIT------KEIAYN--GLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFV--------NKY---YAASSEDTELLYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKI-----QICAQTLHVSCIEICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELA-KYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNYDPVHP 1588
            ++  KG+YPYD++   +  E   ELPPI         S++ DD+Y  AQ +    N + + +Y+ +Y+K D+ I+       +++      L+P  ++  PG+S  + L   +  ++++ D+ M    E GIRGGI+          NKY   Y  + E   L+Y+D NNL GW +SQ LP   F W++ N+ N+L +C   + +     Y +E+D++ P  LH++  D P+AP++  P  SK EKL+ T + K N+V+++++L  Y+++G  +  +HR ++F+Q+  LK  I +     +           ++  N +    + N+    +KR+ ++ C S ++   Y +KP F+      + L+A H+N+  I LD+P Y+  S+LDLSK  +     N +  KY+     D+ ++ +DTDS   ++        +  +I     DTS+Y   +P
Sbjct:  193 LITRKGVYPYDYMDCEEKYEET-ELPPIKDFYNRLNDSNIKDDDYKHAQNVWKSFNIKNLREYSELYVKTDVLILADIFEKFRDVCLKTYKLDPAWYFTAPGLSWDAMLKKTQIKLDLIHDIDMVLMIEKGIRGGISQCCNRYAKANNKYMKEYDKNKESNYLMYLDANNLYGWTMSQYLPHGGFKWIYPNIGNIL-KCPDDSKK----GYILEVDLEYPKELHDYHTDLPLAPEKKIPDGSKQEKLLTTLYDKTNYVVHYKILKQYLEMGLKLKKVHRILEFEQSDWLKKYIDLNTEMRKKATNEFEKDFYKLMNNSVFGKAIENV----RKRIDIKFCTSYKQAKRYIAKPNFKGRTIFSENLVAIHMNKTEIKLDKPIYVGMSILDLSKHLMCDFHYNVMKPKYK-----DLTLLYMDTDSLTYDIKTDDFYEDMKNMIN--YFDTSDYQENNP 632
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: D7GXL4 (Rho_N domain-containing protein OS=Tribolium castaneum OX=7070 GN=TcasGA2_TC006914 PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.988e-48
Identity = 145/457 (31.73%), Postives = 236/457 (51.64%), Query Frame = 2 
Query:  317 IVRAKGIYPYDFVTSL-KVLESNYELPPI---WSS-----VSDDEYATAQEI*TLQNCRTM*DY------------TLVYLK*DLRIITKEIAYNGLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFVNKYYAASSEDTELLYIDINNLNGWALSQNLPCDNFVWVH----ENLNNVL-SECMSGNIELLPYSYTIEIDIDIPDRL--HNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQICAQTLHVSCIEICTNYLII--VYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELAKYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNYDPVHPLYS 1597
            I+R KGIYPY+++ S  K  E+  +LP I   +SS     +S +E+  A ++      + + ++            T V+   + R +  E +Y GL+P+ +Y  PG++    L      +E+L D  MY F+E GIRGGI+  +  Y+ + E+T+++YID NNL GWALSQ LP  +F W+     +N++ +L S+  +G        Y +E+D+  P  L  HN  ND P+AP+   PP  KVEKL+   + KKN++++++ L LY  LG  +  +HR IKF Q+  +   +K     +    +  E     L++   Y  ++  +  ++ I   C+  EK+    +KP F+       +L A H  +  +  ++P YI Q+VLDLSKL +Y+   N + K   E N ++ ++  DTDSF  E+ N      +         DTS+Y   H LYS
Sbjct:  772 IIR-KGIYPYEYMDSFEKFFET--KLPSIDKFYSSLTKEGISQEEFEHAVKVWKHFKIKNLGEWHDLYLKLDVLLLTDVFE--NFRDLCLEKSY-GLDPVWYYTTPGLAWDCMLKYTSVELELLTDYEMYLFFEKGIRGGISQCSNRYSQADENTQIIYIDANNLYGWALSQKLPEKDFKWLTCDEIKNVDGILVSDSDTG--------YVLEVDLAFPVDLAIHNKFNDLPLAPENRIPPGGKVEKLLCHFYDKKNYIIHYKTLKLYKSLGIRITKVHRGIKFTQSNFIAPYVKFNTEQRQKAKNDFEKDFWKLMVNAPYGKSMQSVRNQQNIKLYCDE-EKLQKAINKPNFKHRTIFSKHLAAVHNFKTKVLFNKPIYIGQAVLDLSKLLMYNFHYNVIKK---EFNQNVKLLYGDTDSFIYEIKNADFYEFMKN--NPDYFDTSDYPKDHSLYS 1208
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: J9M431 (Uncharacterized protein OS=Acyrthosiphon pisum OX=7029 PE=4 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.186e-47
Identity = 147/492 (29.88%), Postives = 237/492 (48.17%), Query Frame = 2 
Query:  248 SKLAKAVNT--LTDLPLTCSVFDGI---IVRAKGIYPYDFVTSLKVLESNYELPP--------IWSSVSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIITKEI---------AYNGLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFVNKYYAA-----------SSEDTELLYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQI-----CAQTLHVSCIEICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELAKYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRN----KLLDTSNYDPVHPLYS 1597
            S LA+ + T  L +   T  VFD +   +V  KG+YPY++  S + L+    LP           S + ++E+  A+E+ +  NC+T+ +Y+ +YLK D+ ++             AYN L+P +++  PG+S  + L    Q +++L D  M   +E GIRGG+  V+K YA            S E + ++Y D NNL GWA+SQ++P   F WV   LN +    ++      P     ++D+  P  LH+  ND P  PQ   P  SKV KLM T   KKN+++++R L   IK G IV  +HR I+F Q+  L   IK+                 ++  N +    M +     +K M +   +   ++    +K TF+  I+ +D L A  L    I  D+P YI  +VLD+SK  +Y    N + ++  +    I ++  DTDS    V + + +     +I N      LDT++  P+HP Y+
Sbjct:  724 STLAENLMTPGLENFRETARVFDEVDMPLVTRKGVYPYEYTDSWERLKDT-SLPSKRSFYSMLTESRIKENEFDHAKEVWSHFNCKTLGEYSDLYLKIDVLLLADVFENFRDVCMKAYN-LDPAHYFTAPGLSFDAMLKFTGQKLQLLDDYDMLLMFENGIRGGLVQVSKRYAKANNMKTPGYDESKEKSWIVYQDCNNLYGWAMSQSMPYGGFNWVEPTLNGLYDLDVTS-----PIGRVYDVDVSYPHHLHDQHNDLPFLPQNSVPRGSKVRKLMGTFEKKKNYIVHYRSLQQAIKNGLIVEKVHRVIQFNQSDWLAKYIKLNTEMRKRAKNDFEKDFFKLMNNAVFGKTMQS----KRKEMKMELVSCERRLQKLINKTTFKHCIRYNDNLNAVELENKIISFDKPIYIGFAVLDISKTLMYDYHYNVMQRHYGD---KIELMYTDTDSL---VYHVQTEDFYADLIENPNLLDRLDTADLPPIHPCYT 1198
[Close]
BLAST of Rho_N domain-containing protein vs. TrEMBL
Match: K7JB67 (Uncharacterized protein OS=Nasonia vitripennis OX=7425 PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.191e-47
Identity = 151/490 (30.82%), Postives = 243/490 (49.59%), Query Frame = 2 
Query:  248 SKLAKAVNTLTDLPLTCSVF--DGI------IVRAKGIYPYDFVTSLKVLESNYELPP---IWSS-----VSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIITKEIAYN---------GLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGIT------------FVNKYYAASSEDTELLYIDINNLNGWALSQNLPCDNFVWVHE----NLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKI-----QICAQTLHVSCIEICTNYLIIVYMVNL*GIGKKRMILR--PCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELAKYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNY 1573
            S L K  + LT+L +   VF  DG       +++ KG++PYD+V+SL  L +   LP     +SS     +SD++Y  A+ +    N +T+  Y+ +YLK D+ I+  E+  N         GL+P ++Y  PG+S  + L   +  +++L D+ M  F E GIRGGI+            ++N+ Y A++++  L+Y D NNL GWA+++ LP   F WV +    N  NV  +         P  Y +E+D++ P  LH    D P   + +CPP SK +KLM T + KKN+V+++R L   +  G  +  IHRA++F+Q+  LK  I +     +           ++  N +    M N     + +++ +      AE +I   +KPTF      D+YL+A  + R  +C+ +P YI  SVLDLSK  IY    + +    E       ++  DTDS   EV N  +  ++   I     DTS+Y
Sbjct:  561 SSLDKLSSYLTELGMLERVFQEDGFTPEQITLLKRKGVFPYDYVSSLAKL-NEVNLPTKEDFFSSLYDAHISDEDYEHAKRVWQELNVQTLGQYSDLYLKTDV-ILLAEVFENFRSNCLQAYGLDPAHYYTTPGLSWDAMLKYTQVRLDLLTDIDMLMFVERGIRGGISQCCNRYAKANNPYMNEGYDANADEKYLVYYDANNLYGWAMTEALPSGKFKWVADLQTPNFFNVPDDG--------PKGYILEVDLEYPIMLHGAHRDMPFCAEHMCPPGSKQKKLMTTLYDKKNYVIHYRALKQALAHGLRLKKIHRALEFEQSKWLKPYIDLNSDMRKNAKNEFEKMLFKLFNNAVYGKTMENERKHVEVKLVTKWEGRYGAEALI---AKPTFHNCTIFDEYLVAVQMFRAEVCIKKPIYIGLSVLDLSKTLIYRFHYDYML---ERAGDKCKLLYTDTDSLVYEVSNLNVYEMMRIDIHE--FDTSDY 1032
[Close]
BLAST of Rho_N domain-containing protein vs. Ensembl Nematostella
Match: EDO46109 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR56])

HSP 1 Score: 141.739 bits (356), Expect = 1.693e-35
Identity = 120/452 (26.55%), Postives = 214/452 (47.35%), Query Frame = 2 
Query:  329 KGIYPYDFVTSLKVLESNYELPP---IWSS-----VSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIIT------KEIAYN--GLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFVNKYYAASSE------DTEL-----LYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQICAQTLHVSCIE-----ICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELAKYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNYDPVHP 1588
            KG++PYD+  +   L++  +LPP    +S+     +S+++Y  AQ++       TM DY  +YL+ D+ ++       +++     GL+P  +Y  PG++  +AL   R  +E+L D  M   +E GIRGG++ ++  ++ ++       D  L      Y+D NNL GWA+S+ LP   F W+    +  L E          +   +E+D+  P  LH+  +D+P+AP+ I    +KV KL+     K  +V++   L LY  LG  V  +HR I F+++  LKT I +    +    +  E     +  N +    M N+    + R+ +R   + ++     SKP ++      + L A H+ +  +  ++P Y+   +LDLSK  +Y          + +      ++  DTDS   E+        +   +R+ + DTSNY   HP
Sbjct: 1063 KGVFPYDWFCNFDQLDA-IQLPPKEAFYSTLNDTDISEEDYQHAQKVWETFKMSTMRDYHDLYLESDVLLLADVFENFRDVCLENYGLDPAWYYTAPGLAWDAALKITRVELELLTDCDMLLMFEEGIRGGVSMISTRHSKANNPYMREYDPNLPTKYITYLDANNLYGWAMSKPLPTHGFRWM---TDQELKEWGR-------HPCVVEVDMAYPRHLHDSHDDYPLAPESI--KINKVGKLIPNLNDKTKYVVHHETLKLYESLGLKVTKVHRGITFEESGWLKTYIDLNTSLRAKATNDFEKDFFKLMNNSVFGKTMENI----RNRVDIRLITNEKQARKLISKPNYKHRTIFCENLAAIHMRKTRLVFNKPVYLGMCILDLSKNLMYDFH---YGYVKPKYGDKAKLLFTDTDSLMYEIETEDFYKDISGDVRS-MFDTSNYPRNHP 1493
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000066165.1 (SMESG000066165.1)

HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 330/466 (70.82%), Postives = 378/466 (81.12%), Query Frame = 2 
Query:  254 LAKAVNTLTDLPLTCSVFDGIIVRAKGIYPYDFVTSLKVLESNYELPPIWSSVSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIIT--------KEIAYNGLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFVNKYYAASSEDTELLYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQICAQT-----LHVSCIEICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELAKYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNYDPVHPLYSRNLDS 1612
            LAKAV TLTDLPLTCS FDG+IV+AKGI+PYDF  SLKVLES YELPP W SVSDDEYATAQ I T QNC TM DY L YLK D+ ++         K IAYNGLEPLNFYGIPGMS ASALMTL++PIE+LQDM M++FYEGGIRGG+TFVNK++ ASSEDTELLYIDINNL GWALSQNLP  +FVWVH+NLN+VLSEC++ NIE LPY YT+E+DI+IP+R+H +LNDFP+AP+++CPPNSKVEKLMLTH+ KKNHVL+WRLL LYI+LGA V  IHRAIKFKQ+PI K  I+     ++     L+    ++  N L    + NL    KKRM LR CNSAEKMIVY SKPTF+KSIKI D LIAAHLN+ SICLDRP+YI QSVLDLSKLR+Y LQ NELAKYR E NCDINIVA DTDSFFLEV +CKLD +LP +IR+ LLDTSNYDP HPLYSR LDS
Sbjct:  505 LAKAVKTLTDLPLTCSAFDGLIVKAKGIFPYDFAVSLKVLESTYELPPKWDSVSDDEYATAQLIWTQQNCTTMLDYMLTYLKLDVFLLADYFQQFRAKAIAYNGLEPLNFYGIPGMSWASALMTLKEPIELLQDMEMFNFYEGGIRGGLTFVNKHHVASSEDTELLYIDINNLYGWALSQNLPYGDFVWVHDNLNDVLSECVNANIEFLPYGYTMEVDINIPERVHQYLNDFPLAPEKMCPPNSKVEKLMLTHYSKKNHVLHWRLLKLYIELGAEVECIHRAIKFKQSPIFKEYIQRNTDLRSNTKCELYRDLYKLFNNSLYGKSVENL----KKRMNLRLCNSAEKMIVYASKPTFKKSIKIVDDLIAAHLNKDSICLDRPSYIGQSVLDLSKLRMYQLQYNELAKYRSEFNCDINIVAGDTDSFFLEVKHCKLDILLPAMIRDNLLDTSNYDPAHPLYSRKLDS 966
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000066165.1 (SMESG000066165.1)

HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 330/466 (70.82%), Postives = 378/466 (81.12%), Query Frame = 2 
Query:  254 LAKAVNTLTDLPLTCSVFDGIIVRAKGIYPYDFVTSLKVLESNYELPPIWSSVSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIIT--------KEIAYNGLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFVNKYYAASSEDTELLYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQICAQT-----LHVSCIEICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELAKYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNYDPVHPLYSRNLDS 1612
            LAKAV TLTDLPLTCS FDG+IV+AKGI+PYDF  SLKVLES YELPP W SVSDDEYATAQ I T QNC TM DY L YLK D+ ++         K IAYNGLEPLNFYGIPGMS ASALMTL++PIE+LQDM M++FYEGGIRGG+TFVNK++ ASSEDTELLYIDINNL GWALSQNLP  +FVWVH+NLN+VLSEC++ NIE LPY YT+E+DI+IP+R+H +LNDFP+AP+++CPPNSKVEKLMLTH+ KKNHVL+WRLL LYI+LGA V  IHRAIKFKQ+PI K  I+     ++     L+    ++  N L    + NL    KKRM LR CNSAEKMIVY SKPTF+KSIKI D LIAAHLN+ SICLDRP+YI QSVLDLSKLR+Y LQ NELAKYR E NCDINIVA DTDSFFLEV +CKLD +LP +IR+ LLDTSNYDP HPLYSR LDS
Sbjct:  529 LAKAVKTLTDLPLTCSAFDGLIVKAKGIFPYDFAVSLKVLESTYELPPKWDSVSDDEYATAQLIWTQQNCTTMLDYMLTYLKLDVFLLADYFQQFRAKAIAYNGLEPLNFYGIPGMSWASALMTLKEPIELLQDMEMFNFYEGGIRGGLTFVNKHHVASSEDTELLYIDINNLYGWALSQNLPYGDFVWVHDNLNDVLSECVNANIEFLPYGYTMEVDINIPERVHQYLNDFPLAPEKMCPPNSKVEKLMLTHYSKKNHVLHWRLLKLYIELGAEVECIHRAIKFKQSPIFKEYIQRNTDLRSNTKCELYRDLYKLFNNSLYGKSVENL----KKRMNLRLCNSAEKMIVYASKPTFKKSIKIVDDLIAAHLNKDSICLDRPSYIGQSVLDLSKLRMYQLQYNELAKYRSEFNCDINIVAGDTDSFFLEVKHCKLDILLPAMIRDNLLDTSNYDPAHPLYSRKLDS 990
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000066165.1 (SMESG000066165.1)

HSP 1 Score: 655.21 bits (1689), Expect = 0.000e+0
Identity = 330/466 (70.82%), Postives = 378/466 (81.12%), Query Frame = 2 
Query:  254 LAKAVNTLTDLPLTCSVFDGIIVRAKGIYPYDFVTSLKVLESNYELPPIWSSVSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIIT--------KEIAYNGLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFVNKYYAASSEDTELLYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQICAQT-----LHVSCIEICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELAKYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNYDPVHPLYSRNLDS 1612
            LAKAV TLTDLPLTCS FDG+IV+AKGI+PYDF  SLKVLES YELPP W SVSDDEYATAQ I T QNC TM DY L YLK D+ ++         K IAYNGLEPLNFYGIPGMS ASALMTL++PIE+LQDM M++FYEGGIRGG+TFVNK++ ASSEDTELLYIDINNL GWALSQNLP  +FVWVH+NLN+VLSEC++ NIE LPY YT+E+DI+IP+R+H +LNDFP+AP+++CPPNSKVEKLMLTH+ KKNHVL+WRLL LYI+LGA V  IHRAIKFKQ+PI K  I+     ++     L+    ++  N L    + NL    KKRM LR CNSAEKMIVY SKPTF+KSIKI D LIAAHLN+ SICLDRP+YI QSVLDLSKLR+Y LQ NELAKYR E NCDINIVA DTDSFFLEV +CKLD +LP +IR+ LLDTSNYDP HPLYSR LDS
Sbjct:  567 LAKAVKTLTDLPLTCSAFDGLIVKAKGIFPYDFAVSLKVLESTYELPPKWDSVSDDEYATAQLIWTQQNCTTMLDYMLTYLKLDVFLLADYFQQFRAKAIAYNGLEPLNFYGIPGMSWASALMTLKEPIELLQDMEMFNFYEGGIRGGLTFVNKHHVASSEDTELLYIDINNLYGWALSQNLPYGDFVWVHDNLNDVLSECVNANIEFLPYGYTMEVDINIPERVHQYLNDFPLAPEKMCPPNSKVEKLMLTHYSKKNHVLHWRLLKLYIELGAEVECIHRAIKFKQSPIFKEYIQRNTDLRSNTKCELYRDLYKLFNNSLYGKSVENL----KKRMNLRLCNSAEKMIVYASKPTFKKSIKIVDDLIAAHLNKDSICLDRPSYIGQSVLDLSKLRMYQLQYNELAKYRSEFNCDINIVAGDTDSFFLEVKHCKLDILLPAMIRDNLLDTSNYDPAHPLYSRKLDS 1028
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000037212.1 (SMESG000037212.1)

HSP 1 Score: 632.098 bits (1629), Expect = 0.000e+0
Identity = 322/466 (69.10%), Postives = 370/466 (79.40%), Query Frame = 2 
Query:  254 LAKAVNTLTDLPLTCSVFDGIIVRAKGIYPYDFVTSLKVLESNYELPPIWSSVSDDEYATAQEI*TLQNCRTM*DYTLVYLK*DLRIIT--------KEIAYNGLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFVNKYYAASSEDTELLYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQICAQT-----LHVSCIEICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELAKYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNYDPVHPLYSRNLDS 1612
            LAKAV TLTDLPLTCS FDG+IV+AKGI+PYDF  SL+VLES YELPP W SVSDDEYATAQ I T QNC TM DY L YLK D+ ++         K IAYNGLEPLNFYGIPGMS ASALMTL++PIE+LQDM M++FYEGGIRGG+TFVNK++ ASSEDTELL+IDINNL GWALSQNLP  +FVWVH NLN+VLSEC++ NIE LPY YT+E+DI+IP+R+H +LNDFP+AP+++CPPNSKVEKLMLTH+ KKNHVL+W+LL LYI+LGA V  IHRAIKFKQ PI K  I+     ++     LH    ++  N L    + NL    KKRM LR CNSAEKMIVY SKPTF+KSIKI D LIAAHLN+ SICLDR +YI QSVLDLSKLR+Y LQ NELAKYR E NCDINIVA DTDSFFLEV +CKLD +LP +IR+ LLDT      HPLYSR LDS
Sbjct: 1122 LAKAVKTLTDLPLTCSAFDGLIVKAKGIFPYDFAVSLEVLESTYELPPKWDSVSDDEYATAQLIWTQQNCTTMLDYMLTYLKLDVFLLADYFQQFRAKAIAYNGLEPLNFYGIPGMSWASALMTLKEPIELLQDMEMFNFYEGGIRGGLTFVNKHHVASSEDTELLHIDINNLYGWALSQNLPYGDFVWVHYNLNDVLSECVNANIEFLPYGYTMEVDINIPERVHQYLNDFPLAPEKMCPPNSKVEKLMLTHYSKKNHVLHWKLLKLYIELGAEVECIHRAIKFKQAPIFKEYIQRNTDLRSNSKCELHRDLYKLFNNSLYGKSVENL----KKRMNLRLCNSAEKMIVYASKPTFKKSIKIVDDLIAAHLNKDSICLDRLSYIGQSVLDLSKLRMYQLQYNELAKYRSEFNCDINIVAGDTDSFFLEVKHCKLDILLPAMIRDSLLDT------HPLYSRKLDS 1577

HSP 2 Score: 122.094 bits (305), Expect = 9.691e-29
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 3 
Query:    3 KEQIFGDKRMPNFILVTFQSKTQYNGSYTASSSIFKHFNVASLSLSKNTDYSKTYFQDF*NDNYGTTYMQSIVRNM 230
            KEQIF D+RMPNFILVTFQS++QYNGSY  SSSIFK+F V SL+LSKN+DY +TY QDF NDNY  TYMQSIVRNM
Sbjct:  365 KEQIFRDRRMPNFILVTFQSESQYNGSYLTSSSIFKNFGVTSLTLSKNSDYRETYTQDFDNDNYCATYMQSIVRNM 440
[Close]
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Match: SMESG000050587.1 (SMESG000050587.1)

HSP 1 Score: 598.586 bits (1542), Expect = 0.000e+0
Identity = 307/461 (66.59%), Postives = 352/461 (76.36%), Query Frame = 2 
Query:  254 LAKAVNTLTDLPLTCSVFDGIIVRAKGIYPYDFVTSLKVLESNYELPPIWSSVSDDEYATAQEI*TLQNCRTM*-------DYTLVYLK*DLRIITKEIAYNGLEPLNFYGIPGMSMASALMTLRQPIEVLQDM*MYDFYEGGIRGGITFVNKYYAASSEDTELLYIDINNLNGWALSQNLPCDNFVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAPQRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFKQTPILKT*IKIQI-CAQTLHVSCIEICTNYLIIVYMVNL*GIGKKRMILRPCNSAEKMIVYDSKPTFRKSIKIDDYLIAAHLNRGSICLDRPNYIDQSVLDLSKLRIYHLQ*NELAKYREELNCDINIVALDTDSFFLEVLNCKLDTILPTIIRNKLLDTSNYDPVHPLYSRNLDS 1612
            LAKAV TLTDLPLTCS FDG+IV+AKGI+PYDF  SL+VLES YELPP W SVSDDEYATAQ I T QNC T+         Y L + +      T E  +N              MASALMTL++PIE+LQDM M++FYEGGIRGG+TFVNK++ ASSEDTELLYIDINNL GWALSQNLP  +FVWVH+NLN+VLSEC++ NIE LPY YT+E+DI+IP+R+H +LNDFP+AP+++CPPNSKVEKLMLTH+ KKNHVL+WRLL LYI+LGA V  IHRA+KFKQ+PI K  I+     AQT   S IEIC NYLII YM                   EKMIVY SKPTF+KSIKI D LIAAHLN+ SICLDRP+YI QSVLDLSKLR+Y LQ NELAKYR E NCDINIVA DTDSFFLEV +CKLD +LP +IR+ LLDTSNYDP HPLYSR LDS
Sbjct:  706 LAKAVKTLTDLPLTCSAFDGLIVKAKGIFPYDFAVSLEVLESTYELPPKWDSVSDDEYATAQLIWTQQNCTTILFSAISRKGYCLQWFR------TSEFLWNSWN----------VMASALMTLKEPIELLQDMEMFNFYEGGIRGGLTFVNKHHVASSEDTELLYIDINNLYGWALSQNLPYGDFVWVHDNLNDVLSECVNANIEFLPYGYTMEVDINIPERVHQYLNDFPLAPEKMCPPNSKVEKLMLTHYSKKNHVLHWRLLKLYIELGAEVECIHRAMKFKQSPIFKEYIQRNTDYAQTQSASFIEICINYLIIAYM-----------------GTEKMIVYASKPTFKKSIKIVDDLIAAHLNKDSICLDRPSYIGQSVLDLSKLRMYQLQYNELAKYRSEFNCDINIVAGDTDSFFLEVKHCKLDILLPAMIRDNLLDTSNYDPAHPLYSRKLDS 1133

HSP 2 Score: 123.25 bits (308), Expect = 4.326e-29
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = 3 
Query:    3 KEQIFGDKRMPNFILVTFQSKTQYNGSYTASSSIFKHFNVASLSLSKNTDYSKTYFQDF*NDNYGTTYMQSIVRNM 230
            KEQIFGD+RMPNFILVTFQS++QYNGSY  S+SIFK+F V SL+LSKN+DY +TY QDF NDNY  +YMQSIVRNM
Sbjct:  251 KEQIFGDRRMPNFILVTFQSESQYNGSYLTSNSIFKNFGVTSLTLSKNSDYRETYTQDFENDNYCASYMQSIVRNM 326
The following BLAST results are available for this feature:
BLAST of Rho_N domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ZC53.43.405e-2124.23pep chromosome:WBcel235:X:1925750:1937689:1 gene:W... [more]
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2L2YKB91.376e-4930.87Uncharacterized protein (Fragment) OS=Parasteatoda... [more]
A0A4Y2PKA17.776e-4928.67Uncharacterized protein OS=Araneus ventricosus OX=... [more]
D7GXL41.988e-4831.73Rho_N domain-containing protein OS=Tribolium casta... [more]
J9M4311.186e-4729.88Uncharacterized protein OS=Acyrthosiphon pisum OX=... [more]
K7JB674.191e-4730.82Uncharacterized protein OS=Nasonia vitripennis OX=... [more]
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO461091.693e-3526.55Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
back to top
BLAST of Rho_N domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Rho_N domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000066165.10.000e+070.82SMESG000066165.1[more]
SMESG000066165.10.000e+070.82SMESG000066165.1[more]
SMESG000066165.10.000e+070.82SMESG000066165.1[more]
SMESG000037212.19.691e-2969.10SMESG000037212.1[more]
SMESG000050587.14.326e-2966.59SMESG000050587.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029260 ID=SMED30029260|Name=Rho_N domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1613bp
ATAAGGAACAAATATTTGGAGATAAAAGAATGCCTAATTTTATACTTGTT
ACTTTTCAATCTAAAACTCAATATAATGGATCATATACAGCATCAAGTTC
AATATTCAAACATTTTAATGTCGCTTCTCTATCTTTATCAAAAAACACTG
ATTATAGCAAAACTTATTTTCAGGATTTTTAGAATGATAATTATGGTACT
ACATATATGCAATCTATTGTGAGAAATATGGATTATTTGGATAAAAATCT
AAATTAGCAAAAGCTGTGAATACTCTTACTGATTTACCATTGACTTGTTC
TGTTTTCGATGGTATAATTGTTAGGGCAAAGGGTATCTATCCTTATGATT
TTGTTACATCTCTTAAGGTCCTTGAATCGAATTATGAATTACCTCCTATT
TGGAGCTCTGTATCTGATGATGAATATGCGACAGCACAAGAAATTTAAAC
TCTGCAAAATTGTCGAACAATGTAAGATTACACGTTAGTCTACCTAAAAT
AGGACTTGCGAATTATTACAAAAGAAATTGCCTATAATGGTCTAGAACCT
CTGAATTTTTATGGTATTCCTGGTATGTCAATGGCGTCTGCTCTCATGAC
ATTAAGGCAACCTATAGAAGTTCTACAAGATATGTAAATGTATGATTTCT
ATGAAGGAGGAATACGGGGTGGTATAACATTTGTTAACAAATATTATGCT
GCAAGTTCTGAAGATACCGAACTTCTTTATATTGATATTAATAATCTAAA
TGGTTGGGCTCTTAGCCAAAATCTACCTTGTGATAACTTTGTTTGGGTGC
ATGAGAATCTAAATAATGTCCTCAGTGAATGTATGAGTGGGAATATCGAA
CTCCTTCCATATAGTTACACTATTGAAATTGACATTGATATTCCAGATCG
CTTGCATAACTTTTTGAATGACTTTCCAATTGCTCCGCAAAGAATTTGTC
CACCAAATTCTAAAGTTGAGAAGCTAATGCTCACTCATTGGCCCAAAAAG
AACCATGTTCTTTATTGGAGACTTCTAAATCTGTATATAAAATTAGGTGC
GATTGTTGTAATTATACATAGAGCAATTAAATTTAAACAAACGCCCATTT
TAAAAACATAAATAAAAATACAAATCTGCGCTCAAACTCTACATGTGAGC
TGCATAGAGATTTGTACAAATTATTTAATAATAGTTTATATGGTAAATCT
GTAGGGAATTGGAAAAAAACGAATGATTTTGAGGCCATGCAATTCAGCTG
AAAAAATGATTGTATATGATTCAAAGCCGACTTTCAGAAAATCAATCAAA
ATTGATGATTATTTGATTGCTGCACATCTGAATAGAGGTTCAATCTGCTT
AGACCGACCTAACTACATTGACCAATCTGTACTAGATTTGTCTAAGTTGC
GGATTTACCATCTTCAATAAAATGAATTAGCGAAATATAGAGAGGAATTA
AATTGTGATATTAATATCGTTGCTCTCGATACCGATTCATTTTTTCTTGA
GGTTTTGAACTGTAAGCTTGACACTATTTTGCCAACAATAATTAGAAATA
AGCTTTTAGATACATCAAATTATGACCCGGTACATCCGTTATATTCGAGA
AACCTTGACTCGA
back to top

protein sequence of SMED30029260-orf-1

>SMED30029260-orf-1 ID=SMED30029260-orf-1|Name=SMED30029260-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=158bp
MYDFYEGGIRGGITFVNKYYAASSEDTELLYIDINNLNGWALSQNLPCDN
FVWVHENLNNVLSECMSGNIELLPYSYTIEIDIDIPDRLHNFLNDFPIAP
QRICPPNSKVEKLMLTHWPKKNHVLYWRLLNLYIKLGAIVVIIHRAIKFK
QTPILKT*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0006353DNA-templated transcription, termination
GO:0006260DNA replication
GO:0071897DNA biosynthetic process
GO:0090305nucleic acid phosphodiester bond hydrolysis
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000418head
PLANA:0000419prepharyngeal region
Vocabulary: molecular function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
GO:00084083'-5' exonuclease activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31511:SF12coord: 1..140
NoneNo IPR availablePANTHERPTHR31511FAMILY NOT NAMEDcoord: 1..140
NoneNo IPR availableSUPERFAMILYSSF56672DNA/RNA polymerasescoord: 1..140