Uro-adherence factor A

Overview
NameUro-adherence factor A
Smed IDSMED30029236
Length (bp)2629
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Uro-adherence factor A (SMED30029236) t-SNE clustered cells

Violin plots show distribution of expression levels for Uro-adherence factor A (SMED30029236) in cells (dots) of each of the 12 neoblast clusters.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30029236

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
eyeSMED30029236SMESG000076818.1 Contig27612newmark_estsPMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
eyeSMED30029236SMESG000076818.1 Contig27612uc_Smed_v2PMID:27612384
Roberts-Galbraith et al., 2016		whole organism asexual adult colorimetric in situ hybridization evidence
testis primordiumSMED30029236SMESG000076818.1 PL06018A2A01_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism juvenile cDNA to DNA expression microarray evidence
testisSMED30029236SMESG000076818.1 PL08007A2H05_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism adult hermaphrodite colorimetric in situ hybridization evidence
early male germ cellSMED30029236SMESG000076818.1 PL08007A2H05_SE3GPL10652PMID:20844018
Wang et al., 2010		whole organism asexual adult cDNA to DNA expression microarray evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Uro-adherence factor A vs. TrEMBL
Match: A0A448WQW4 (Uncharacterized protein (Fragment) OS=Protopolystoma xenopodis OX=117903 GN=PXEA_LOCUS11379 PE=4 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.468e-25
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 2 
Query: 2165 FKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSC----QAFRNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFLKLNAR 2446
            +   R F+L PYDD++K+HLNP DRR+K+VAAKNGC I I GP   +  L      QA R ++TY+C VAGP  + ++KC+NYLKETFPN+FL++  R
Sbjct:  197 YAYERLFQLGPYDDLVKSHLNPADRRIKAVAAKNGCYIGITGPKLIHPDLDSAGGFQASRARITYQCCVAGPTGDKVNKCLNYLKETFPNSFLRITFR 294
[Close]
BLAST of Uro-adherence factor A vs. TrEMBL
Match: A0A4E0RAI5 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_005915 PE=4 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.795e-22
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 2 
Query: 2165 FKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQAF-RNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFLKLNAR 2446
            F+V R FEL+ YDD++K+HLN  DRR+K+VA KNGCRI I GP    D   C A  R K  Y C +AGP+++ + KC+N+LKETFPN+FL+ N R
Sbjct:  909 FEVERVFELNQYDDLVKSHLNAADRRIKAVALKNGCRIRITGPFTKPDTSLCGAANRGKTLYNCHIAGPSEDRIGKCVNFLKETFPNSFLRTNWR 1003
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BLAST of Uro-adherence factor A vs. TrEMBL
Match: A0A2H1C7I4 (Uncharacterized protein OS=Fasciola hepatica OX=6192 GN=D915_09542 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.257e-22
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 2 
Query: 2165 FKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQAF-RNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFLKLNAR 2446
            F+V R FEL+ YDD++K+HLN  DRR+K+VA KNGCRI I GP    D   C A  R K  Y C +AGP+++ + KC+N+LKETFPN+FL+ N R
Sbjct: 1492 FEVERVFELNQYDDLVKSHLNAADRRIKAVALKNGCRIRITGPFTKPDTSLCGAANRGKTLYNCHIAGPSEDRIGKCVNFLKETFPNSFLRTNWR 1586
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BLAST of Uro-adherence factor A vs. TrEMBL
Match: A0A504Y9H7 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_09034 PE=4 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.595e-22
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 2 
Query: 2165 FKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQ-AFRNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFLKLNAR 2446
            F+V R FEL+ YDD++K+HLN  DRR+K+VA KNGCRI I GP    D   C  A R K  Y C +AGP+++ + KC+N+LKETFPN+FL+ N R
Sbjct: 1529 FEVERVFELNQYDDLVKSHLNAADRRIKAVALKNGCRIRITGPFTKPDTSLCGVANRGKTLYNCHIAGPSEDRIGKCVNFLKETFPNSFLRTNWR 1623
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BLAST of Uro-adherence factor A vs. TrEMBL
Match: A0A183AF89 (Uncharacterized protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS5624 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.280e-21
Identity = 50/95 (52.63%), Postives = 72/95 (75.79%), Query Frame = 2 
Query: 2165 FKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQ-AFRNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFLKLNAR 2446
            F+V R FELS YDD++K++LN  DRR+K+VA KNGC I I GPI   DP +   + R+++T+ C +AGP+++ + KC+N+LKETFPN+FL+ N R
Sbjct: 1018 FEVERIFELSQYDDLVKSYLNVADRRIKAVALKNGCDIRIVGPITKPDPSAIGISGRSRITFNCHIAGPSEDRIGKCVNFLKETFPNSFLRTNWR 1112
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BLAST of Uro-adherence factor A vs. Planmine SMEST
Match: SMESG000076818.1 (SMESG000076818.1)

HSP 1 Score: 1399.03 bits (3620), Expect = 0.000e+0
Identity = 783/783 (100.00%), Postives = 783/783 (100.00%), Query Frame = 2 
Query:  104 MIFINNNNTQSDKYFHDNKSQISNKTYFKRLTNSNQEYIGSNDPDYSNFLNQYKRDTNTDEFSNTRHVDNLEDIIAHPLASRRNLHNTDINPTESWLFKNNQRXXXXXXXXXXXXXEALENYLNDLAKNYDDIDRRIRNAEKFVNKIEESHNANFNSIDRFINSRNNFTLNDKPIEIPEKSTNYVSELRVNILDNAVNNPLSSNNDQINXXXXXXXXXXXXXXXYKKPTSSKHSIFSRKPSFSGQNNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEYVNIPPPKVFSSNYFKNETLKSKTVQTVDNVAYLKMFPQQSLEDRSVQTNSPVTCLSKVTVDVCVGTESKLIKSRIKLNSSRNSIITNNLSDTGMEFSDSDRSISLIKSSKNEYSDMIAGDIEDHNSIAKTAVFRNRIKTPPNKSNLVNFKGDDPSKTLEPLIQSNIKSSKSENWNRCSSNIGKFNKNKVLKFSPNHGNSKEEKTSLPKVGWNDKINFEHDNSDNKNSTKNASLEIQRLLENLGTHLQASMSLRKTRAALIKSPISSNSSTASFWDNPLHKNDLISTKLTPGCTIGTKATNSCLKVNRANNMINSELQAICKTIEKNKKFDSRSIKVHXXXXXXXXXXXXGKNNLKTLRSESLDMRPLIKPKSSPTRNNSTVKKAASNINLSGDNKFPSNFKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQAFRNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFLKLNARNA 2452
            MIFINNNNTQSDKYFHDNKSQISNKTYFKRLTNSNQEYIGSNDPDYSNFLNQYKRDTNTDEFSNTRHVDNLEDIIAHPLASRRNLHNTDINPTESWLFKNNQRNNSDDSINNPSDDEALENYLNDLAKNYDDIDRRIRNAEKFVNKIEESHNANFNSIDRFINSRNNFTLNDKPIEIPEKSTNYVSELRVNILDNAVNNPLSSNNDQINLSFKKSPKFSRSSLLYKKPTSSKHSIFSRKPSFSGQNNVYKCNYKNITTNNYKNLTSEFQSPKSGSSSFSNSNKSNLEYVNIPPPKVFSSNYFKNETLKSKTVQTVDNVAYLKMFPQQSLEDRSVQTNSPVTCLSKVTVDVCVGTESKLIKSRIKLNSSRNSIITNNLSDTGMEFSDSDRSISLIKSSKNEYSDMIAGDIEDHNSIAKTAVFRNRIKTPPNKSNLVNFKGDDPSKTLEPLIQSNIKSSKSENWNRCSSNIGKFNKNKVLKFSPNHGNSKEEKTSLPKVGWNDKINFEHDNSDNKNSTKNASLEIQRLLENLGTHLQASMSLRKTRAALIKSPISSNSSTASFWDNPLHKNDLISTKLTPGCTIGTKATNSCLKVNRANNMINSELQAICKTIEKNKKFDSRSIKVHESSSSDMESIISGKNNLKTLRSESLDMRPLIKPKSSPTRNNSTVKKAASNINLSGDNKFPSNFKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQAFRNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFLKLNARNA
Sbjct:    1 MIFINNNNTQSDKYFHDNKSQISNKTYFKRLTNSNQEYIGSNDPDYSNFLNQYKRDTNTDEFSNTRHVDNLEDIIAHPLASRRNLHNTDINPTESWLFKNNQRNNSDDSINNPSDDEALENYLNDLAKNYDDIDRRIRNAEKFVNKIEESHNANFNSIDRFINSRNNFTLNDKPIEIPEKSTNYVSELRVNILDNAVNNPLSSNNDQINLSFKKSPKFSRSSLLYKKPTSSKHSIFSRKPSFSGQNNVYKCNYKNITTNNYKNLTSEFQSPKSGSSSFSNSNKSNLEYVNIPPPKVFSSNYFKNETLKSKTVQTVDNVAYLKMFPQQSLEDRSVQTNSPVTCLSKVTVDVCVGTESKLIKSRIKLNSSRNSIITNNLSDTGMEFSDSDRSISLIKSSKNEYSDMIAGDIEDHNSIAKTAVFRNRIKTPPNKSNLVNFKGDDPSKTLEPLIQSNIKSSKSENWNRCSSNIGKFNKNKVLKFSPNHGNSKEEKTSLPKVGWNDKINFEHDNSDNKNSTKNASLEIQRLLENLGTHLQASMSLRKTRAALIKSPISSNSSTASFWDNPLHKNDLISTKLTPGCTIGTKATNSCLKVNRANNMINSELQAICKTIEKNKKFDSRSIKVHESSSSDMESIISGKNNLKTLRSESLDMRPLIKPKSSPTRNNSTVKKAASNINLSGDNKFPSNFKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQAFRNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFLKLNARNA 783
[Close]
BLAST of Uro-adherence factor A vs. Planmine SMEST
Match: SMESG000050742.1 (SMESG000050742.1)

HSP 1 Score: 127.487 bits (319), Expect = 3.220e-30
Identity = 95/259 (36.68%), Postives = 136/259 (52.51%), Query Frame = 2 
Query: 1679 LLENLGTHLQASMSLRKTRAALIKSPISSNSSTA--SFWDNPLHKNDLISTKLTPGCTIGTKATNSCLKVNRANNMINSELQAICKTIEKNKKFDSRSIKVHXXXXXXXXXXXXGKNNLKTL---RSESLDMRPLIKPKSSPTRNNSTVKKAASNINLSGD-NKFPSNFKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQAF--RNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFL 2431
            +LENLG HLQ S +         K  I  N      SFWDNPL K +L+ ++         K     L+ +   N  N  L            +  +  K+   +S    +    + +LK L   +S S + RPL  P               SN N++   N  P++ K  +SF L+PYDD++K+HLN  DRR+KSVA+KNG  IAI+GP+N+Y+  + Q F  ++K+ +RCT++  N ENLDKC+NYLKETFPNT+L
Sbjct:  370 ILENLGIHLQNSGTPL-ANVCQKKQNIRQNKDNNFNSFWDNPLDKFELVHSE---NNETNRKGFQLKLQEHPTGN-TNGNLDEA--------HYQQKHAKIEIENSKTALTENDEEKSLKILTQTKSVSRENRPLTLP-------------LGSNFNINRKINFMPTSMKFSKSFYLNPYDDMVKSHLNSADRRIKSVASKNGSVIAIEGPLNAYENQN-QNFQTKSKMIFRCTISSSNSENLDKCVNYLKETFPNTYL 601
[Close]
BLAST of Uro-adherence factor A vs. Planmine SMEST
Match: SMESG000024364.1 (SMESG000024364.1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.412e-16
Identity = 43/103 (41.75%), Postives = 68/103 (66.02%), Query Frame = 2 
Query: 2132 NLSGDNKFPSNFKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGP--INSYDPLSCQAFRNKVTYRCTVAGPNKENLDKCMNYLKETFPNTFLK 2434
            +LS D   P+NF+  + F LSP+D+IIK+H  P DRR+++VA K  C+I I GP  ++ + P S    R K+ + C ++G +K NL+KC+  +K+TFP T ++
Sbjct:  324 HLSSD---PNNFQ--KVFVLSPFDEIIKSHTCPNDRRLRAVANKMRCKIDIFGPMKVSHFTP-SFYTTREKIIFHCVLSGDSKYNLEKCLKCIKDTFPTTTIR 420
[Close]
BLAST of Uro-adherence factor A vs. Planmine SMEST
Match: SMESG000071919.1 (SMESG000071919.1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.334e-7
Identity = 31/88 (35.23%), Postives = 51/88 (57.95%), Query Frame = 2 
Query: 2165 FKVFRSFELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQAFRNKVT-YRCTVAGPNKENLDKCMNYLKETFPNT 2425
            +  +R FEL  +D+IIK+H    DRR+K+++ +  C++ I GP  S +  S Q  R  V  Y   V   NK  L+K +N ++ +FP++
Sbjct:  181 WDYYRVFELKKFDEIIKSHQARSDRRLKAISNRMLCKLDIIGPYQSTN--SQQNSRTAVDWYNLIVYASNKLRLEKSINCIQLSFPSS 266
[Close]
BLAST of Uro-adherence factor A vs. Planmine SMEST
Match: SMESG000012235.1 (SMESG000012235.1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.494e-6
Identity = 30/94 (31.91%), Postives = 51/94 (54.26%), Query Frame = 2 
Query: 2165 FKVFRS-FELSPYDDIIKAHLNPIDRRVKSVAAKNGCRIAIDGPI--NSYDPLSCQAFRN--KVTYRCTVAGPNKENLDKCMNYLKETFPNTFL 2431
             K +R  F++  +D+I+K+   P DRR+++V ++  C+I + GP   +  D  S  +F N  +  Y   +    KE LDK +  ++ETFP   L
Sbjct:  424 MKCYRKCFQVQQFDEIVKSFNTPSDRRMRAVCSRVNCQIKLFGPTSRSQVDSKSHISFVNHEQPLYHLLIFTKTKEQLDKSLKCIQETFPKACL 517
The following BLAST results are available for this feature:
BLAST of Uro-adherence factor A vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A448WQW42.468e-2553.06Uncharacterized protein (Fragment) OS=Protopolysto... [more]
A0A4E0RAI51.795e-2254.74Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A2H1C7I44.257e-2254.74Uncharacterized protein OS=Fasciola hepatica OX=61... [more]
A0A504Y9H76.595e-2254.74Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
A0A183AF893.280e-2152.63Uncharacterized protein OS=Echinostoma caproni OX=... [more]
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BLAST of Uro-adherence factor A vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Uro-adherence factor A vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000076818.10.000e+0100.00SMESG000076818.1[more]
SMESG000050742.13.220e-3036.68SMESG000050742.1[more]
SMESG000024364.18.412e-1641.75SMESG000024364.1[more]
SMESG000071919.14.334e-735.23SMESG000071919.1[more]
SMESG000012235.12.494e-631.91SMESG000012235.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029236 ID=SMED30029236|Name=Uro-adherence factor A|organism=Schmidtea mediterranea sexual|type=transcript|length=2629bp
ATTAATTAATAAATAATTCAATTTAATTATTGAATTTATTATCATTGCTT
TTCTGCCTAAGTTATGGATCAAGTGAACAATTTTTCCAAATTACAAAGAA
TCCATGATCTTTATTAACAACAACAACACCCAATCAGATAAATATTTCCA
TGATAATAAATCTCAAATTTCAAATAAAACTTACTTCAAACGTTTAACGA
ATTCCAATCAAGAATACATCGGTAGCAATGATCCAGATTATTCCAATTTT
TTAAACCAATATAAACGAGACACAAATACTGATGAATTTTCTAATACCAG
ACATGTTGACAATTTAGAAGACATCATTGCGCACCCATTAGCCAGTCGAA
GAAATCTCCATAACACCGATATAAATCCAACCGAAAGTTGGTTATTTAAA
AACAATCAACGCAACAATTCTGATGATTCAATAAATAATCCTTCTGACGA
TGAAGCGCTCGAAAACTATTTGAATGACTTAGCAAAAAATTATGATGACA
TTGATCGTCGAATTAGAAATGCTGAGAAATTCGTCAATAAAATTGAAGAA
TCTCACAATGCAAATTTCAATTCTATCGATCGATTTATTAATTCTAGAAA
CAATTTCACTTTAAATGACAAGCCAATCGAAATTCCTGAAAAAAGCACCA
ATTACGTTTCCGAGTTGAGAGTGAATATTTTAGATAATGCAGTTAACAAT
CCTTTATCAAGTAATAATGATCAAATAAATTTATCATTCAAAAAATCGCC
AAAATTTTCGAGATCTTCACTTTTGTATAAAAAACCAACCAGTTCAAAAC
ATTCCATTTTCTCACGGAAACCTTCGTTTTCTGGTCAAAATAATGTTTAC
AAATGCAATTATAAAAATATTACTACTAATAATTATAAGAACTTAACCAG
CGAATTTCAAAGTCCGAAAAGTGGAAGCAGTTCATTTTCTAATTCTAATA
AATCAAACTTAGAATATGTCAATATTCCACCACCCAAGGTTTTTAGTTCC
AATTATTTCAAAAATGAAACTCTCAAGTCCAAAACAGTTCAAACTGTTGA
TAATGTAGCATATCTCAAAATGTTTCCTCAACAATCATTGGAAGATAGAT
CAGTTCAAACAAATTCTCCCGTAACATGTTTATCAAAAGTTACTGTTGAT
GTCTGCGTTGGAACTGAATCAAAACTTATAAAATCTCGTATAAAACTTAA
TTCATCCAGAAATTCAATAATTACCAACAATCTTTCCGACACAGGTATGG
AATTTTCCGATTCGGACAGAAGTATAAGTTTAATAAAATCTTCAAAAAAT
GAATACTCTGATATGATAGCTGGAGACATAGAAGATCATAATTCAATTGC
CAAAACAGCTGTTTTCAGAAATAGGATAAAAACACCACCAAATAAATCAA
ATTTAGTGAATTTCAAAGGAGATGATCCGAGTAAAACACTTGAGCCTTTA
ATACAGTCTAATATTAAAAGTAGTAAATCCGAAAACTGGAATAGATGTAG
CAGTAATATAGGTAAATTTAACAAAAATAAAGTGTTAAAGTTTTCACCCA
ATCATGGAAATAGTAAAGAGGAGAAAACCAGCTTACCGAAAGTTGGATGG
AACGATAAAATAAATTTCGAACATGACAATAGTGACAATAAAAACAGTAC
GAAAAATGCATCACTTGAAATTCAAAGACTTTTAGAAAATCTAGGAACTC
ACTTACAAGCCTCAATGAGTTTGAGAAAGACTCGAGCAGCATTAATTAAA
TCTCCGATATCGTCCAATTCCAGCACAGCTTCATTTTGGGATAATCCACT
CCACAAAAACGATTTAATAAGTACAAAATTAACCCCCGGTTGTACTATTG
GAACAAAAGCTACAAATTCTTGCTTAAAAGTAAACCGGGCAAATAACATG
ATAAATTCCGAACTTCAAGCTATTTGTAAAACAATAGAAAAGAATAAAAA
GTTCGATAGCCGTTCAATTAAAGTACACGAATCTTCAAGTAGTGACATGG
AATCAATAATAAGTGGTAAAAATAACCTTAAAACTCTTCGAAGCGAATCT
TTAGACATGCGACCATTGATAAAACCAAAATCCTCTCCTACCAGAAACAA
CAGCACAGTTAAAAAAGCAGCCTCAAACATAAACTTATCCGGTGATAATA
AGTTCCCAAGTAATTTTAAAGTTTTCCGGTCTTTCGAATTGAGTCCGTAT
GATGATATTATAAAAGCCCATTTAAATCCTATTGACAGAAGAGTGAAGTC
TGTAGCTGCGAAAAACGGATGCCGAATTGCAATTGATGGGCCCATCAATT
CATATGACCCATTATCGTGCCAGGCCTTTAGAAATAAAGTCACCTACCGA
TGTACAGTCGCTGGGCCGAACAAAGAAAATTTGGACAAATGCATGAATTA
CTTGAAAGAAACTTTTCCGAATACGTTTCTAAAGTTGAATGCTAGAAATG
CTTAAGACCAAATTTTCACTCGAATGCTCAAAAATTCGAATAAGAAATGG
CTTTCATGTTATTTCTGTCGTGAGTATAGAAGAATTATTTTATTCCTATA
AAATAATCTTTACTTTTGGTATTTGACAACATTTCACAATTGTATTTTAT
TAATAAATAAACCATCAAAGTATTAGCTG
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protein sequence of SMED30029236-orf-1

>SMED30029236-orf-1 ID=SMED30029236-orf-1|Name=SMED30029236-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=784bp
MIFINNNNTQSDKYFHDNKSQISNKTYFKRLTNSNQEYIGSNDPDYSNFL
NQYKRDTNTDEFSNTRHVDNLEDIIAHPLASRRNLHNTDINPTESWLFKN
NQRNNSDDSINNPSDDEALENYLNDLAKNYDDIDRRIRNAEKFVNKIEES
HNANFNSIDRFINSRNNFTLNDKPIEIPEKSTNYVSELRVNILDNAVNNP
LSSNNDQINLSFKKSPKFSRSSLLYKKPTSSKHSIFSRKPSFSGQNNVYK
CNYKNITTNNYKNLTSEFQSPKSGSSSFSNSNKSNLEYVNIPPPKVFSSN
YFKNETLKSKTVQTVDNVAYLKMFPQQSLEDRSVQTNSPVTCLSKVTVDV
CVGTESKLIKSRIKLNSSRNSIITNNLSDTGMEFSDSDRSISLIKSSKNE
YSDMIAGDIEDHNSIAKTAVFRNRIKTPPNKSNLVNFKGDDPSKTLEPLI
QSNIKSSKSENWNRCSSNIGKFNKNKVLKFSPNHGNSKEEKTSLPKVGWN
DKINFEHDNSDNKNSTKNASLEIQRLLENLGTHLQASMSLRKTRAALIKS
PISSNSSTASFWDNPLHKNDLISTKLTPGCTIGTKATNSCLKVNRANNMI
NSELQAICKTIEKNKKFDSRSIKVHESSSSDMESIISGKNNLKTLRSESL
DMRPLIKPKSSPTRNNSTVKKAASNINLSGDNKFPSNFKVFRSFELSPYD
DIIKAHLNPIDRRVKSVAAKNGCRIAIDGPINSYDPLSCQAFRNKVTYRC
TVAGPNKENLDKCMNYLKETFPNTFLKLNARNA*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000036eye
PLANA:0000208testis
PLANA:0002030early male germ cell
PLANA:0003304testis primordium
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 123..143