SMED30029152
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30029152 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 9
Homology
BLAST of SMED30029152 vs. Ensembl Xenopus
Match: CEP152 (centrosomal protein 152kDa [Source:NCBI gene;Acc:100380166]) HSP 1 Score: 55.0694 bits (131), Expect = 9.782e-7 Identity = 119/548 (21.72%), Postives = 259/548 (47.26%), Query Frame = 2 Query: 773 LELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESELKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVE----FKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSDYQQENKNYHRSSCPVL----STVGRMEMENGDRESSAEHYKILELQKQL--FLLTNRTH-----SLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLR----EQLEQSWMSEREVLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQKSNEESERTNWNEWLDKKLQ 2359 L++LY ARG+++E+ L E+ ++ R NH++ +++ + + + S + + R+ I + ++ + + N E L+++ +K+ ++S+ +Q+ +L S I ++ ++ ++ + ++ + L+ ++ ++ L+E+ + RLE L +L +E K+E R+ + LE +K C L + S ++ L ++ + + + + + L+E+V++L Q+ +YE + L G +NG + QQ + +Y + S +GR+ NG + + ILEL+ +L L +N+T +L L N + K S ++ ++ A D + ENL K+ +K + LS +E E ++ L++ L+QE + +K+ T++ + ++L E Q DK+ +IE ++ H ++++ ++L + + SE+E L ++ + ++ +++ NE+ V+ YI L ++K E N E L K+LQ Sbjct: 267 LQVLYKARGRQLEEQNNNL----EECERQIRYLNHQLAIVKDQKDGLTISLQESQKLLQNSREMEIQLKGQLTALQKTVESVTTNEEHLRKELNVAKVAMESMQQQLLDLRRSESIQRAREQHETVVSMLKKKNEEQVLVLQQKLDDINAALNEEKELCRRLEDRL----KLSERNQEESKLEKTDIINRLSKSLEESQKQCANLLQSGSIQEASHLRLQLQQVQSSKIITDGMNKALQEEVRELQEQITMYESAARL------GVFVNGGEEQQLSDSYVELGIKKVNWQKSQLGRVVSHNGVKNDLSSEEIILELKSELERCLNSNKTKRKQIVTLQADLKGHVSKNEELKKSLEEAERTARDNQIRAENLANKV---DKSPFQYLSSDEFREE------LQKLQSEKQILQQENEKYLLHIKELTANEEKLKVANQELCNEMRGMIQDFDRDKKEAIERCERTYEQHNEDIKVHLLKELYEKFESEKEQLSQDYEEKMTRLQTQMNEMHNEMTAVQECYITLCKEKDALED---NTKEHLKKQLQ 788
BLAST of SMED30029152 vs. Ensembl Xenopus
Match: CEP152 (centrosomal protein 152kDa [Source:NCBI gene;Acc:100380166]) HSP 1 Score: 53.9138 bits (128), Expect = 2.193e-6 Identity = 119/548 (21.72%), Postives = 259/548 (47.26%), Query Frame = 2 Query: 773 LELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESELKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVE----FKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSDYQQENKNYHRSSCPVL----STVGRMEMENGDRESSAEHYKILELQKQL--FLLTNRTH-----SLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLR----EQLEQSWMSEREVLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQKSNEESERTNWNEWLDKKLQ 2359 L++LY ARG+++E+ L E+ ++ R NH++ +++ + + + S + + R+ I + ++ + + N E L+++ +K+ ++S+ +Q+ +L S I ++ ++ ++ + ++ + L+ ++ ++ L+E+ + RLE L +L +E K+E R+ + LE +K C L + S ++ L ++ + + + + + L+E+V++L Q+ +YE + L G +NG + QQ + +Y + S +GR+ NG + + ILEL+ +L L +N+T +L L N + K S ++ ++ A D + ENL K+ +K + LS +E E ++ L++ L+QE + +K+ T++ + ++L E Q DK+ +IE ++ H ++++ ++L + + SE+E L ++ + ++ +++ NE+ V+ YI L ++K E N E L K+LQ Sbjct: 267 LQVLYKARGRQLEEQNNNL----EECERQIRYLNHQLAIVKDQKDGLTISLQESQKLLQNSREMEIQLKGQLTALQKTVESVTTNEEHLRKELNVAKVAMESMQQQLLDLRRSESIQRAREQHETVVSMLKKKNEEQVLVLQQKLDDINAALNEEKELCRRLEDRL----KLSERNQEESKLEKTDIINRLSKSLEESQKQCANLLQSGSIQEASHLRLQLQQVQSSKIITDGMNKALQEEVRELQEQITMYESAARL------GVFVNGGEEQQLSDSYVELGIKKVNWQKSQLGRVVSHNGVKNDLSSEEIILELKSELERCLNSNKTKRKQIVTLQADLKGHVSKNEELKKSLEEAERTARDNQIRAENLANKV---DKSPFQYLSSDEFREE------LQKLQSEKQILQQENEKYLLHIKELTANEEKLKVANQELCNEMRGMIQDFDRDKKEAIERCERTYEQHNEDIKVHLLKELYEKFESEKEQLSQDYEEKMTRLQTQMNEMHNEMTAVQECYITLCKEKDALED---NTKEHLKKQLQ 788
BLAST of SMED30029152 vs. Ensembl Xenopus
Match: CEP152 (centrosomal protein 152kDa [Source:NCBI gene;Acc:100380166]) HSP 1 Score: 53.9138 bits (128), Expect = 2.260e-6 Identity = 119/548 (21.72%), Postives = 259/548 (47.26%), Query Frame = 2 Query: 773 LELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESELKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVE----FKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSDYQQENKNYHRSSCPVL----STVGRMEMENGDRESSAEHYKILELQKQL--FLLTNRTH-----SLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLR----EQLEQSWMSEREVLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQKSNEESERTNWNEWLDKKLQ 2359 L++LY ARG+++E+ L E+ ++ R NH++ +++ + + + S + + R+ I + ++ + + N E L+++ +K+ ++S+ +Q+ +L S I ++ ++ ++ + ++ + L+ ++ ++ L+E+ + RLE L +L +E K+E R+ + LE +K C L + S ++ L ++ + + + + + L+E+V++L Q+ +YE + L G +NG + QQ + +Y + S +GR+ NG + + ILEL+ +L L +N+T +L L N + K S ++ ++ A D + ENL K+ +K + LS +E E ++ L++ L+QE + +K+ T++ + ++L E Q DK+ +IE ++ H ++++ ++L + + SE+E L ++ + ++ +++ NE+ V+ YI L ++K E N E L K+LQ Sbjct: 267 LQVLYKARGRQLEEQNNNL----EECERQIRYLNHQLAIVKDQKDGLTISLQESQKLLQNSREMEIQLKGQLTALQKTVESVTTNEEHLRKELNVAKVAMESMQQQLLDLRRSESIQRAREQHETVVSMLKKKNEEQVLVLQQKLDDINAALNEEKELCRRLEDRL----KLSERNQEESKLEKTDIINRLSKSLEESQKQCANLLQSGSIQEASHLRLQLQQVQSSKIITDGMNKALQEEVRELQEQITMYESAARL------GVFVNGGEEQQLSDSYVELGIKKVNWQKSQLGRVVSHNGVKNDLSSEEIILELKSELERCLNSNKTKRKQIVTLQADLKGHVSKNEELKKSLEEAERTARDNQIRAENLANKV---DKSPFQYLSSDEFREE------LQKLQSEKQILQQENEKYLLHIKELTANEEKLKVANQELCNEMRGMIQDFDRDKKEAIERCERTYEQHNEDIKVHLLKELYEKFESEKEQLSQDYEEKMTRLQTQMNEMHNEMTAVQECYITLCKEKDALED---NTKEHLKKQLQ 788
BLAST of SMED30029152 vs. TrEMBL
Match: A0A193GS51 (Cep152 OS=Patiria miniata OX=46514 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.866e-15 Identity = 125/540 (23.15%), Postives = 256/540 (47.41%), Query Frame = 2 Query: 758 RELDNLELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESELKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLE---TLLDEKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNL---LDISDVGFH---------LNGSDYQ-QENKNYHRSSCPVLSTVG-----RMEMENGDRESSAEHYKILELQKQLFLLTNRTHSLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVC-NNHYD---NLREQLEQSWMSEREVLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQK 2302 R++ L++LY ARG+ ++QL +L + +E+ ++ RI NH++ L + E + + Q E +Q + + QI LN E++EK Q+++ I+SL Q+SEL S ++++ ++Q LL + +++ + RL+ ++ L+EK +I+ L + + + +EL + E+ N + +L++ +K C++L + S ++I L ++ + ++ +D+T+ L+E++ ++ QL +YE +M L S H L SD++ ++ S P LS R E+E + + + ++ +LQ L + RLL + D + + K+ E + + E T +HL+ I+ L+T + + ++L+T+ + + ++ + Q+ E++ +DK+ +E +++ C H D +LRE+L + SER++L E Q +++ +L A E+D VK LYI + ++K Sbjct: 389 RQMAQLQILYKARGRELDQLGNQLQVLKEESGRDKRILNHQLALAQGERAGATASYEQCQQLLGESQQENSKLKGQLQAAQVQIQALNAAKHEVEEKLQATESAIESLTGQLSELQRSQPLARAREQQDGLLKSLQERYEQEVTRLKEKVDNGERNLEEKSADIESLRRELSRVSKAAELAKLEQGN---TINTLTSQLQNSQKQCRDLLETGSLQEINLLRVQLQEATAARTFSQDMTSALQEELTEMKEQLQMYESAMELGVMASKSPESIHTSKSFAVRNLAKSDWKTPQSSRSSSDSAPKLSPEDLVQGLRKELERSLQSNRTKRAQVSKLQADLRTAKTDLEAGKTRLLGMETTAKD-------------------KEVRFKVLEAQLETTKASPTAERTTFRHLQDEIDKLRTEKEDMSKTLEALKTEEGRLNEANSDLKKQMVQMVTEWD-------QDKKIDMERVQKTCLQLHEDSSRHLREELVTEFQSERDMLKEAHQHQLQELRSELEQAQKELDAVKGLYIDVCEEK 899
BLAST of SMED30029152 vs. TrEMBL
Match: A0A5K4F1C5 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 PE=4 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.214e-14 Identity = 84/316 (26.58%), Postives = 168/316 (53.16%), Query Frame = 2 Query: 767 DNLELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESE---LKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQIS----ELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLD-EKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSDYQQENKNYHRSSCPVLSTVGRMEMENGDRESSAEHYKI 1690 D ELLY+ARG ++++LQ E+ RE KE R+SNH+++L E + L+S+ + + ++ ++ N +++ QL RN EE Q+K I + S NE +S ELT+ N + ++ ++++ L++ + ++F S ++ +++E++ L EK E+ L L+ K+E+ + ++ + K+ ++LE +K+C++L ++ L +++ +L + + ED+ +L+++++D Q+ +YE + L D FH NG+D Q +Y S + T GR ++ + EH I Sbjct: 311 DRRELLYAARGYQLQELQTEIIQLREDIAKEKRLSNHRLLLAEGDKETLRSKLSAMEDTVNSLRKELVAKQGNSEVLQ------KQLKRN-EEFQKKLNEELIALRSTNESLSSQLVELTTGNALKRAEEREAQLIESLEQRFISKTEEIKAELNTTQRNLTEKEVEVTGLRRQLEISKAEIIKAQQTHHKM-INEANKQLEEAQKHCQQLASSALCSEVTSLRQKVIELETSKKITEDVNKILQDELRDFRDQVSIYESVLKL----DAYFHNNGNDENQ--FSYESSEFTPIGTKGRHSGKSVAFADTIEHSHI 612
BLAST of SMED30029152 vs. TrEMBL
Match: A0A183M104 (Uncharacterized protein OS=Schistosoma margrebowiei OX=48269 GN=SMRZ_LOCUS9729 PE=4 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 5.558e-14 Identity = 73/277 (26.35%), Postives = 156/277 (56.32%), Query Frame = 2 Query: 767 DNLELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESE---LKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLD-EKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSDYQQ 1585 D ELLY+ARG +++ LQ E RE KE R+SNH+++L E + L+S+ + + +++ E+ +N +++ Q Q +L + ++E +S+ +SL+ Q+ ELT+ N + ++ ++++ L + + ++F S ++ +R+E++ L +K E+ L L+ K+E+ + ++ + K+ ++LE +K+C++L ++ L +++ +L + + ED+ +L+++++D Q+ +YE + L DV FH NG+D Q Sbjct: 105 DRRELLYAARGHQLQVLQTENVQLREDIAKEKRLSNHRLLLAEGDKEILRSKLSAMEDTVKSLREELVAKQENSEVLQKQLKQNEELQKKLDEELRALRSTN---ESLSSQLVELTTGNALKRAEEREAQLTEHLEQRFISKTEEIRAELNTTQRHLTQKEVEVTDLRRQLEISKAEIIKAQQTHNKM-INEANKQLEEAQKHCQQLASSALCSEVTSLRQKVIELETSKKITEDVNKILQDELRDFRDQVSIYESVLKL----DVYFHNNGNDENQ 373
BLAST of SMED30029152 vs. TrEMBL
Match: G4VAR3 (Putative cation efflux protein/ zinc transporter OS=Schistosoma mansoni OX=6183 GN=Smp_170590 PE=4 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.721e-14 Identity = 84/316 (26.58%), Postives = 168/316 (53.16%), Query Frame = 2 Query: 767 DNLELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESE---LKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNE----QISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLD-EKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSDYQQENKNYHRSSCPVLSTVGRMEMENGDRESSAEHYKI 1690 D ELLY+ARG ++++LQ E+ RE KE R+SNH+++L E + L+S+ + + ++ ++ N +++ QL RN EE Q+K I + S NE Q+ ELT+ N + ++ ++++ L++ + ++F S ++ +++E++ L EK E+ L L+ K+E+ + ++ + K+ ++LE +K+C++L ++ L +++ +L + + ED+ +L+++++D Q+ +YE + L D FH NG+D Q +Y S + T GR ++ + EH I Sbjct: 311 DRRELLYAARGYQLQELQTEIIQLREDIAKEKRLSNHRLLLAEGDKETLRSKLSAMEDTVNSLRKELVAKQGNSEVLQ------KQLKRN-EEFQKKLNEELIALRSTNESLSSQLVELTTGNALKRAEEREAQLIESLEQRFISKTEEIKAELNTTQRNLTEKEVEVTGLRRQLEISKAEIIKAQQTHHKM-INEANKQLEEAQKHCQQLASSALCSEVTSLRQKVIELETSKKITEDVNKILQDELRDFRDQVSIYESVLKL----DAYFHNNGNDENQ--FSYESSEFTPIGTKGRHSGKSVAFADTIEHSHI 612
BLAST of SMED30029152 vs. TrEMBL
Match: A0A267H660 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig032283g1 PE=4 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.706e-13 Identity = 119/531 (22.41%), Postives = 240/531 (45.20%), Query Frame = 2 Query: 656 NAVPSVPQHLKSSLNTGIKLTTRDVAIECIPATQRELDNLELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESELKSQSNVVS-------------RSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKI-EELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSDYQQENKNYHRSSCPVLSTVGRMEMENGDRESS-----AEHYKILELQKQLFLLTNRTHSLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKI-TEMEKR---LKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLREQLEQSWMS 2179 N +P +H + + G+ DV + +P QR+LD L++LY ARG+ IE+L+ +L +E KE R+ HK+ L E+ +S V S RSL+E+ +RQ + A+L E+LQ + + ++L Q++E+T++ I + +Q + + + + D + L+ I RL +++ ++D L + Q + + + + ++L ++ C++L + +I L ++ +L +S+ E++ + L+E++ DL QL +YE + LL S + + + +S P + + DR+ S AE + +L KQ + L L+ ++K + +S+ ++ + D R+ +E +I +E +K+ + E L+ + + + + LE S+Q++L Q++ + +QL+ EF A A +DK E I++ C H+D RE++ + ++ Sbjct: 239 NILPPSMRHSQLTRPRGV-----DVGVSVVPENQRDLDQLDILYRARGRHIEELKAQLTELQESSAKEARLLKHKLALTEANRESAEKVASSTEDRLKEALEQIRSLKEESAKRQ-------------ELTAKLLAENEQLQRQLTEAGCQNEALTAQLTEMTTAGTIGRVRDQQENFIQSLRNKKDEEIFYLKDRIDRLQSEAEQRQADLDAARALATKLGSQQSQQVVDANKQVAAMAQQLHEAQQRCQDLLAGGADSEIVGNLRHQLAQRDLAKSITEEMNSALQEEIADLREQLAMYETAERLLPTSLRSPAAGTAGATEGGREATSTSMPGVGA-------STDRDKSVACLRAELLRCQDLYKQ---KREKVSELQKELIQLKKSSHESRLRCERAELALNDQREQSVAMETRIRSEAQKQQEEAVAAAVAKLKAEEDQLRKQLAAAEERAAELESRLSSVQSELSQSSEAQRSLSAQCEQLQSEFAAAWDRAEQDKAAEFERIQRTCQAHFDLCREKMREELLA 741
BLAST of SMED30029152 vs. Ensembl Nematostella
Match: EDO46525 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RPK0]) HSP 1 Score: 74.3294 bits (181), Expect = 3.145e-13 Identity = 67/275 (24.36%), Postives = 145/275 (52.73%), Query Frame = 2 Query: 773 LELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESELKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQ-EKSQSSKIV------IDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSD 1576 L++LY ARG++IE+L +L + E+ ++ R+ NH++M+++ E ++ + ++ +Q A ++Q IS D++ + I ++Q EK Q+ +++ IDSLNEQ+S++T ++ ++K+ ++ +L+ ++ + + RL+ ++ LD K +E +RL + EK ++ R+ + L+ ++ C+EL + + ++ L ++ D ++ E + K +V DL QL VY+ ++ GF + +D Sbjct: 413 LQVLYQARGRKIEELNNKLQKQEEELGRQIRVLNHQLMMVKDEHAGMASSLEQA-------QQIAQQSKQDISRVEDKLEASQKKISQIQQEKQQTEEMLHTANSTIDSLNEQLSQMTRADALTKAREQHESILNAARKRQEEEILRLKQKLDESRLSLDWKTEESNRLRDEVLEKGDI-----------INRLTKTLDDTQRQCQELVRTGTVAEVTSLRSQLRDALGARATAEKSVSSFKNEVTDLQEQLSVYQNALKY------GFGGDAAD 663
BLAST of SMED30029152 vs. Planmine SMEST
Match: SMESG000017036.1 (SMESG000017036.1) HSP 1 Score: 2154.79 bits (5582), Expect = 0.000e+0 Identity = 1166/1179 (98.90%), Postives = 1173/1179 (99.49%), Query Frame = 2 Query: 134 MEINYRNYVDLDEQEMRQDXXXXXXXXXXXXVNELDGIELDDNGYSNDESSGDFQEEDNNLLSKTLDEEASRYEIESPXXXXXXXXXXLYPYFNQLNTFVPNWPVNAFPQFCNIPISIGDXXXXXXXXXXXXXXXGIVDSSINWEISLYDEMGVSRVPHDGQFLSDKSEYSSSSNAVPSVPQHLKSSLNTGIKLTTRDVAIECIPATQRELDNLELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESELKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSDYQQENKNYHRSSCPVLSTVGRMEMENGDRESSAEHYKILELQKQLFLLTNRTHSLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLREQLEQSWMSEREVLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQKSNEESERTNWNEWLDKKLQEQKRSLNQQFKTDQDNXXXXXXXXXXXXXXXVRSEIDRRVPQHEKAVGTDKLEELSIATIETRDCSIQVDSLKDMRDLVDQLRSSNRNFETVVKDLEAENEKIRREYEMINSQKLAVENENLLLSSKVTFVKSPSTTDFEKFNFSTRNQQNVEVLNQMPNIIRSTTPQLILDSKRHNNSSSNPRISTTKIHQQFKRLKEDLITQLSKIPNSIPIVDYCSDDISYLNGSHSIMLSSIDSLSEREMNEVKQKLYNIVLDIQARAASTLQLELQKAHSLIRKSLLEKIRNVIPILLSVDGQLIDIPASKIKILSDRIILMLNHLETDDDGKLFXXXXXXXXXXXXXXXXXRNHKSPLSFHPDISIIKFTDACNGSCDDAINSNKARESLLQEKCIKLKDEISQLSEALYKSGSQNISSSQAFCPFQNVDKSILSDIRYSQ 3670 MEINYRNYVDLDEQEMRQDEEKQIKEIQELLVNELDGIELDDNGYSNDESSGDFQEEDNNLLSKTLDEEASRYEIESPNNNYNGKDNNLYPYFNQ+NTFVPNWPVNAFPQFCNIPISIGDNKNNFQYTYQQTNNNGIVDSSINWEISLYDEMGVSRVPHDGQFLSDK EYSSSSNAVPSVPQHLKSS+NTG KLTTRDVAIECIPATQRELDNLELLYSARGKRIEQLQQELDLEREKRMKETRISNHKVMLMESELKSQSNVVSRSLQEQEEQRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISD GFHLNGSDYQQENKNYHRSSCPVLSTVGRMEMENGDRESSAEHYKILELQKQLFLLTNRTHSLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLREQLEQSWMSER+VLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQKSNEESERTNWNEWLDKKLQEQKRSLNQQFKTDQDNIIEEIRIQHREELEIVRSEIDRRVPQHEKAVGTDKLEELSIATIETRDCSIQVDSLKDMRDLVDQLRSSNRNFETVVKDLEAENEKIRREYEMINSQKLAVENENLLLSSKVTFVKSPSTTDFEK NFSTRNQQNVEVLNQMPNIIRSTTPQLILDSKRHNNSSSNPRISTTKIHQQFKRLKEDLITQLSKIPNSIPIVDYCSDDISYLNGSHSI+LSSIDSLSEREMNEVKQKLYNIVLDIQ+RAASTLQLELQKAHSLIRKSLLEKIRNVIPILLSVDGQLIDIPASKIKILSDRIILMLNHLETDDDGKLFIPNPINSSFPFSSTSTPRNHKSPLSFHPDISIIKF+D CNGSCD+ INSNKARESLLQEKCIKLKDEISQLSEALYKSGSQNISSSQAFCPFQNVDKSILSDIRYSQ Sbjct: 1 MEINYRNYVDLDEQEMRQDEEKQIKEIQELLVNELDGIELDDNGYSNDESSGDFQEEDNNLLSKTLDEEASRYEIESPNNNYNGKDNNLYPYFNQINTFVPNWPVNAFPQFCNIPISIGDNKNNFQYTYQQTNNNGIVDSSINWEISLYDEMGVSRVPHDGQFLSDKGEYSSSSNAVPSVPQHLKSSINTGTKLTTRDVAIECIPATQRELDNLELLYSARGKRIEQLQQELDLEREKRMKETRISNHKVMLMESELKSQSNVVSRSLQEQEEQRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDAGFHLNGSDYQQENKNYHRSSCPVLSTVGRMEMENGDRESSAEHYKILELQKQLFLLTNRTHSLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLREQLEQSWMSERDVLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQKSNEESERTNWNEWLDKKLQEQKRSLNQQFKTDQDNIIEEIRIQHREELEIVRSEIDRRVPQHEKAVGTDKLEELSIATIETRDCSIQVDSLKDMRDLVDQLRSSNRNFETVVKDLEAENEKIRREYEMINSQKLAVENENLLLSSKVTFVKSPSTTDFEKLNFSTRNQQNVEVLNQMPNIIRSTTPQLILDSKRHNNSSSNPRISTTKIHQQFKRLKEDLITQLSKIPNSIPIVDYCSDDISYLNGSHSILLSSIDSLSEREMNEVKQKLYNIVLDIQSRAASTLQLELQKAHSLIRKSLLEKIRNVIPILLSVDGQLIDIPASKIKILSDRIILMLNHLETDDDGKLFIPNPINSSFPFSSTSTPRNHKSPLSFHPDISIIKFSDVCNGSCDEKINSNKARESLLQEKCIKLKDEISQLSEALYKSGSQNISSSQAFCPFQNVDKSILSDIRYSQ 1179
BLAST of SMED30029152 vs. Planmine SMEST
Match: SMESG000017036.1 (SMESG000017036.1) HSP 1 Score: 2042.7 bits (5291), Expect = 0.000e+0 Identity = 1109/1122 (98.84%), Postives = 1116/1122 (99.47%), Query Frame = 2 Query: 134 MEINYRNYVDLDEQEMRQDXXXXXXXXXXXXVNELDGIELDDNGYSNDESSGDFQEEDNNLLSKTLDEEASRYEIESPXXXXXXXXXXLYPYFNQLNTFVPNWPVNAFPQFCNIPISIGDXXXXXXXXXXXXXXXGIVDSSINWEISLYDEMGVSRVPHDGQFLSDKSEYSSSSNAVPSVPQHLKSSLNTGIKLTTRDVAIECIPATQRELDNLELLYSARGKRIXXXXXXXXXXREKRMKETRISNHKVMLMESELKSQSNVVSRSLXXXXXXRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDVGFHLNGSDYQQENKNYHRSSCPVLSTVGRMEMENGDRESSAEHYKILELQKQLFLLTNRTHSLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLREQLEQSWMSEREVLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQKSNEESERTNWNEWLDKKLQEQKRSLNQQFKTDQDNXXXXXXXXXXXXXXXVRSEIDRRVPQHEKAVGTDKLEELSIATIETRDCSIQVDSLKDMRDLVDQLRSSNRNFETVVKDLEAENEKIRREYEMINSQKLAVENENLLLSSKVTFVKSPSTTDFEKFNFSTRNQQNVEVLNQMPNIIRSTTPQLILDSKRHNNSSSNPRISTTKIHQQFKRLKEDLITQLSKIPNSIPIVDYCSDDISYLNGSHSIMLSSIDSLSEREMNEVKQKLYNIVLDIQARAASTLQLELQKAHSLIRKSLLEKIRNVIPILLSVDGQLIDIPASKIKILSDRIILMLNHLETDDDGKLFXXXXXXXXXXXXXXXXXRNHKSPLSFHPDISIIKFTDACNGSCDDAINSN 3499 MEINYRNYVDLDEQEMRQDEEKQIKEIQELLVNELDGIELDDNGYSNDESSGDFQEEDNNLLSKTLDEEASRYEIESPNNNYNGKDNNLYPYFNQ+NTFVPNWPVNAFPQFCNIPISIGDNKNNFQYTYQQTNNNGIVDSSINWEISLYDEMGVSRVPHDGQFLSDK EYSSSSNAVPSVPQHLKSS+NTG KLTTRDVAIECIPATQRELDNLELLYSARGKRIEQLQQELDLEREKRMKETRISNHKVMLMESELKSQSNVVSRSLQEQEEQRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISD GFHLNGSDYQQENKNYHRSSCPVLSTVGRMEMENGDRESSAEHYKILELQKQLFLLTNRTHSLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLREQLEQSWMSER+VLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQKSNEESERTNWNEWLDKKLQEQKRSLNQQFKTDQDNIIEEIRIQHREELEIVRSEIDRRVPQHEKAVGTDKLEELSIATIETRDCSIQVDSLKDMRDLVDQLRSSNRNFETVVKDLEAENEKIRREYEMINSQKLAVENENLLLSSKVTFVKSPSTTDFEK NFSTRNQQNVEVLNQMPNIIRSTTPQLILDSKRHNNSSSNPRISTTKIHQQFKRLKEDLITQLSKIPNSIPIVDYCSDDISYLNGSHSI+LSSIDSLSEREMNEVKQKLYNIVLDIQ+RAASTLQLELQKAHSLIRKSLLEKIRNVIPILLSVDGQLIDIPASKIKILSDRIILMLNHLETDDDGKLFIPNPINSSFPFSSTSTPRNHKSPLSFHPDISIIKF+D CNGSCD+ INSN Sbjct: 1 MEINYRNYVDLDEQEMRQDEEKQIKEIQELLVNELDGIELDDNGYSNDESSGDFQEEDNNLLSKTLDEEASRYEIESPNNNYNGKDNNLYPYFNQINTFVPNWPVNAFPQFCNIPISIGDNKNNFQYTYQQTNNNGIVDSSINWEISLYDEMGVSRVPHDGQFLSDKGEYSSSSNAVPSVPQHLKSSINTGTKLTTRDVAIECIPATQRELDNLELLYSARGKRIEQLQQELDLEREKRMKETRISNHKVMLMESELKSQSNVVSRSLQEQEEQRQTAIDNQQIISHQTDQIAQLNRNIEELQEKSQSSKIVIDSLNEQISELTSSNLISKSNQKQSDLLDCINRQFDSDSQRLRSEIHRLSGRLDEKIQEIDRLETLLDEKSELQRNEKENWKVEFKRIQEELESERKYCKELEKCQSQKKIEELNKEIGDLNLKQSLEEDLTNLLKEQVQDLSHQLFVYEKSMNLLDISDAGFHLNGSDYQQENKNYHRSSCPVLSTVGRMEMENGDRESSAEHYKILELQKQLFLLTNRTHSLTNRLLDVRKINLDSKCSGKKFQKLAEDYRQSKENLEVKITEMEKRLKEILSEEETTAEKHLKISIESLKTINSSLEQECKSLQTQLKQATSSMAESHRHYKQLEGEFEAFKQFAHEDKETSIEHIKQVCNNHYDNLREQLEQSWMSERDVLLEEANSQREKILRDLSDAINEVDRVKNLYIQLSQQKSNEESERTNWNEWLDKKLQEQKRSLNQQFKTDQDNIIEEIRIQHREELEIVRSEIDRRVPQHEKAVGTDKLEELSIATIETRDCSIQVDSLKDMRDLVDQLRSSNRNFETVVKDLEAENEKIRREYEMINSQKLAVENENLLLSSKVTFVKSPSTTDFEKLNFSTRNQQNVEVLNQMPNIIRSTTPQLILDSKRHNNSSSNPRISTTKIHQQFKRLKEDLITQLSKIPNSIPIVDYCSDDISYLNGSHSILLSSIDSLSEREMNEVKQKLYNIVLDIQSRAASTLQLELQKAHSLIRKSLLEKIRNVIPILLSVDGQLIDIPASKIKILSDRIILMLNHLETDDDGKLFIPNPINSSFPFSSTSTPRNHKSPLSFHPDISIIKFSDVCNGSCDEKINSN 1122 The following BLAST results are available for this feature:
BLAST of SMED30029152 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30029152 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30029152 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30029152 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30029152 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 3
BLAST of SMED30029152 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30029152 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30029152 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30029152 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30029152 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30029152 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30029152 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of SMED30029152 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30029152 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30029152 ID=SMED30029152|Name=SMED30029152|organism=Schmidtea mediterranea sexual|type=transcript|length=3754bpback to top protein sequence of SMED30029152-orf-1 >SMED30029152-orf-1 ID=SMED30029152-orf-1|Name=SMED30029152-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1180bp MEINYRNYVDLDEQEMRQDEEKQIKEIQELLVNELDGIELDDNGYSNDESback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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