RNA-binding protein

Overview


Name	RNA-binding protein
Smed ID	SMED30029150
Length (bp)	1386

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of RNA-binding protein (SMED30029150) t-SNE clustered cells

Violin plots show distribution of expression levels for RNA-binding protein (SMED30029150) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RNA-binding protein (SMED30029150) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RNA-binding protein (SMED30029150) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30029150

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 7

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
head region	SMED30029150	h1SMcG0011381	SmedASXL_014807	SmedAsxl_ww_GCZZ01	PMID:27034770 Currie et al., 2016
nervous system	SMED30029150	h1SMcG0011381	dd_Smed_v4_11304_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30029150	h1SMcG0011381	dd_Smed_v4_11304_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cephalic ganglia	SMED30029150	h1SMcG0011381	dd_Smed_v4_11304_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
cilated neuron	SMED30029150	h1SMcG0011381	dd_Smed_v4_11304_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
epidermis	SMED30029150	h1SMcG0011381	dd_Smed_v4_11304_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017
dorsal region of the epidermis	SMED30029150	h1SMcG0011381	dd_Smed_v4_11304_0_1	dd_Smed_v4	PMID:28292427 Wurtzel et al., 2017

Note: Hover over icons to view figure legend

Homology

[Close]

BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM24 (RNA binding motif protein 24 [Source:HGNC Symbol;Acc:HGNC:21539])

HSP 1 Score: 156.377 bits (394), Expect = 3.117e-44
Identity = 76/107 (71.03%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  LH
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLH 107

[Close]

BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM38 (RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818])

HSP 1 Score: 152.14 bits (383), Expect = 4.769e-44
Identity = 73/107 (68.22%), Postives = 84/107 (78.50%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSL-VDNLH 689
            M    KDTT+TKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR++ +  ++ V  LH
Sbjct:    1 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLH 107

[Close]

BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM38 (RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818])

HSP 1 Score: 150.599 bits (379), Expect = 1.411e-43
Identity = 69/93 (74.19%), Postives = 78/93 (83.87%), Query Frame = 3

Query:  384 HKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPS 662
             KDTT+TKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR++ +
Sbjct:   28 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQT 120

[Close]

BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM38 (RNA binding motif protein 38 [Source:HGNC Symbol;Acc:HGNC:15818])

HSP 1 Score: 154.836 bits (390), Expect = 1.516e-43
Identity = 73/107 (68.22%), Postives = 84/107 (78.50%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSL-VDNLH 689
            M    KDTT+TKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR++ +  ++ V  LH
Sbjct:   24 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLH 130

[Close]

BLAST of RNA-binding protein vs. Ensembl Human
Match: RBM24 (RNA binding motif protein 24 [Source:HGNC Symbol;Acc:HGNC:21539])

HSP 1 Score: 87.0409 bits (214), Expect = 1.588e-20
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 3

Query:  495 VITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            VITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  LH
Sbjct:    1 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLH 66

[Close]

BLAST of RNA-binding protein vs. Ensembl Celegans
Match: sup-12 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189])

HSP 1 Score: 142.51 bits (358), Expect = 1.511e-40
Identity = 65/88 (73.86%), Postives = 73/88 (82.95%), Query Frame = 3

Query:  387 KDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPR 650
            +DT +TKIFVGGLPYHT+D+TL  YFE FG++EEAVVITDR T KSRGYGFVTMK+   A +A  DPNP IDGRK NVNLA LGAKPR
Sbjct:   30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLGAKPR 117

[Close]

BLAST of RNA-binding protein vs. Ensembl Celegans
Match: sup-12 (SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189])

HSP 1 Score: 144.05 bits (362), Expect = 6.815e-40
Identity = 72/139 (51.80%), Postives = 90/139 (64.75%), Query Frame = 3

Query:  387 KDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSLVDNLHNIDQANRFNTILSSSYSNPLLNILYPTLQNNALLQPVL 803
            +DT +TKIFVGGLPYHT+D+TL  YFE FG++EEAVVITDR T KSRGYGFVTMK+   A +A  DPNP IDGRK NVNLA LGAKPR    + +L      +    +   +       P   + YPT+    L+ P++
Sbjct:   30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKDPNPIIDGRKANVNLAYLGAKPRTNVQLAALAAGQVQLPLTTQLQALFQPRMGLP--QMYYPTV--TGLVNPLM 164

[Close]

BLAST of RNA-binding protein vs. Ensembl Celegans
Match: msi-1 (MuSashI (Fly neural) family; Neural RNA-binding protein MSI-1 [Source:UniProtKB/TrEMBL;Acc:G5EFS2])

HSP 1 Score: 65.4698 bits (158), Expect = 1.791e-11
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            K+F+GGL + TT E LR+YF  FGE+ E +V+ D  T ++RG+GF+T  +     K + +    +DG+K +  +A 
Sbjct:   46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAF 121

HSP 2 Score: 58.5362 bits (140), Expect = 3.444e-9
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 3

Query:  393 TTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATK 572
            T   K+F+GGL   +T E ++ YFE +G++E+A+++ D+ T + RG+GFVT  + E A K
Sbjct:  131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190

[Close]

BLAST of RNA-binding protein vs. Ensembl Celegans
Match: tiar-1 (TIA-1/TIAL RNA binding protein homolog [Source:UniProtKB/TrEMBL;Acc:Q95QV8])

HSP 1 Score: 64.6994 bits (156), Expect = 2.609e-11
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 3

Query:  324 KRLLKNNEIPAN----PEHQMSHLHKDTT-YTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKT 614
            KRLL + E+  N    P  Q S +  DTT +  +FVG L     ++ LR  F+ FG++ +A VI D  T KS+GYGFV+    E+A +AI   N    GR+T
Sbjct:    3 KRLLLDREMKVNWAVEPGQQQSKI--DTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRT 102

[Close]

BLAST of RNA-binding protein vs. Ensembl Celegans
Match: tiar-1 (TIA-1/TIAL RNA binding protein homolog [Source:UniProtKB/TrEMBL;Acc:Q95QV8])

HSP 1 Score: 64.3142 bits (155), Expect = 5.630e-11
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 3

Query:  324 KRLLKNNEIPAN----PEHQMSHLHKDTT-YTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKT 614
            KRLL + E+  N    P  Q S +  DTT +  +FVG L     ++ LR  F+ FG++ +A VI D  T KS+GYGFV+    E+A +AI   N    GR+T
Sbjct:  106 KRLLLDREMKVNWAVEPGQQQSKI--DTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRT 205

[Close]

BLAST of RNA-binding protein vs. Ensembl Fly
Match: Rbp6 (gene:FBgn0260943 transcript:FBtr0113427)

HSP 1 Score: 68.9366 bits (167), Expect = 3.603e-12
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            K+F+GGL + T+ E+LR+YF  +G++ EA+V+ D  T +SRG+GFVT  +     K +      +DG+K +  +A 
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAF 105

HSP 2 Score: 63.929 bits (154), Expect = 1.334e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 3

Query:  375 SHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILD 584
            +H    T   KIFVGGL   TT E +++YFE FG +E+A+++ D+QT + RG+GFVT + SED    + +
Sbjct:  109 AHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQ-SEDVVDKVCE 177

[Close]

BLAST of RNA-binding protein vs. Ensembl Fly
Match: Rbp6 (gene:FBgn0260943 transcript:FBtr0075285)

HSP 1 Score: 68.1662 bits (165), Expect = 3.720e-12
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            K+F+GGL + T+ E+LR+YF  +G++ EA+V+ D  T +SRG+GFVT  +     K +      +DG+K +  +A 
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAF 105

HSP 2 Score: 63.5438 bits (153), Expect = 1.240e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 3

Query:  375 SHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILD 584
            +H    T   KIFVGGL   TT E +++YFE FG +E+A+++ D+QT + RG+GFVT + SED    + +
Sbjct:  109 AHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQ-SEDVVDKVCE 177

[Close]

BLAST of RNA-binding protein vs. Ensembl Fly
Match: Rbp6 (gene:FBgn0260943 transcript:FBtr0333861)

HSP 1 Score: 68.1662 bits (165), Expect = 4.422e-12
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            K+F+GGL + T+ E+LR+YF  +G++ EA+V+ D  T +SRG+GFVT  +     K +      +DG+K +  +A 
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAF 105

HSP 2 Score: 63.1586 bits (152), Expect = 1.580e-10
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 3

Query:  369 QMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILD 584
            + +H    T   KIFVGGL   TT E +++YFE FG +E+A+++ D+QT + RG+GFVT + SED    + +
Sbjct:  107 RRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQ-SEDVVDKVCE 177

[Close]

BLAST of RNA-binding protein vs. Ensembl Fly
Match: Rbp6 (gene:FBgn0260943 transcript:FBtr0290066)

HSP 1 Score: 61.6178 bits (148), Expect = 4.801e-11
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 3

Query:  393 TTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILD 584
            T   KIFVGGL   TT E +++YFE FG +E+A+++ D+QT + RG+GFVT + SED    + +
Sbjct:    3 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQ-SEDVVDKVCE 65

[Close]

BLAST of RNA-binding protein vs. Ensembl Fly
Match: Rbp6 (gene:FBgn0260943 transcript:FBtr0113428)

HSP 1 Score: 63.1586 bits (152), Expect = 6.261e-11
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILD 584
            KIFVGGL   TT E +++YFE FG +E+A+++ D+QT + RG+GFVT + SED    + +
Sbjct:    7 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQ-SEDVVDKVCE 65

[Close]

BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24a (RNA binding motif protein 24a [Source:NCBI gene;Acc:405801])

HSP 1 Score: 153.295 bits (386), Expect = 7.423e-45
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPR 650
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPR 93

[Close]

BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24a (RNA binding motif protein 24a [Source:NCBI gene;Acc:405801])

HSP 1 Score: 156.377 bits (394), Expect = 1.762e-44
Identity = 75/107 (70.09%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  +H
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQIH 107

[Close]

BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24b (RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43])

HSP 1 Score: 155.221 bits (391), Expect = 7.199e-44
Identity = 75/107 (70.09%), Postives = 82/107 (76.64%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P  +  V  +H
Sbjct:    1 MHSSQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKDPNPIIDGRKANVNLAYLGAKPRILQPGFSFGVPQIH 107

[Close]

BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24b (RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43])

HSP 1 Score: 150.214 bits (378), Expect = 2.705e-43
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPR 650
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR
Sbjct:    1 MHSSQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKDPNPIIDGRKANVNLAYLGAKPR 93

[Close]

BLAST of RNA-binding protein vs. Ensembl Zebrafish
Match: rbm24b (RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB-GENE-060312-43])

HSP 1 Score: 149.443 bits (376), Expect = 5.527e-43
Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPR 650
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR
Sbjct:    1 MHSSQKDTTYTKIFVGGLPYHTTDCSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKDPNPIIDGRKANVNLAYLGAKPR 93

[Close]

BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: nxph2 (neurexophilin 2 [Source:Xenbase;Acc:XB-GENE-951506])

HSP 1 Score: 157.147 bits (396), Expect = 9.246e-45
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSL-VDNLH 689
            M  + KDTT+TKIFVGGLPYHTTD +LR YFE FG+++EAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPRN+ S  ++ V  LH
Sbjct:    1 MHTVQKDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIGVQQLH 107

[Close]

BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: rbm24 (RNA binding motif protein 24 [Source:NCBI gene;Acc:394612])

HSP 1 Score: 154.451 bits (389), Expect = 1.288e-43
Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  +H
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIH 107

[Close]

BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982])

HSP 1 Score: 77.0258 bits (188), Expect = 6.020e-16
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPN-PCIDGRKTNVNLA 629
            K+FVGGL + TT+E+L   F  +G++ E VV+ DR++ +SRG+GFVT +N EDA  A++  N   +DGR+  V+ A
Sbjct:   19 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 94

[Close]

BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982])

HSP 1 Score: 77.0258 bits (188), Expect = 6.496e-16
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPN-PCIDGRKTNVNLA 629
            K+FVGGL + TT+E+L   F  +G++ E VV+ DR++ +SRG+GFVT +N EDA  A++  N   +DGR+  V+ A
Sbjct:   19 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 94

[Close]

BLAST of RNA-binding protein vs. Ensembl Xenopus
Match: cirbp (cold inducible RNA binding protein [Source:NCBI gene;Acc:549982])

HSP 1 Score: 77.0258 bits (188), Expect = 6.547e-16
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPN-PCIDGRKTNVNLA 629
            K+FVGGL + TT+E+L   F  +G++ E VV+ DR++ +SRG+GFVT +N EDA  A++  N   +DGR+  V+ A
Sbjct:    7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82

[Close]

BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm24 (RNA binding motif protein 24 [Source:MGI Symbol;Acc:MGI:3610364])

HSP 1 Score: 154.836 bits (390), Expect = 7.923e-44
Identity = 75/107 (70.09%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  LH
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLH 107

[Close]

BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294])

HSP 1 Score: 147.517 bits (371), Expect = 4.327e-41
Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 3

Query:  351 PANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSL-VDNLH 689
            P+     M    KDTT+TKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR++ +  ++ V  LH
Sbjct:   15 PSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLH 128

[Close]

Query:  351 PANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSL-VDNLH 689
            P+     M    KDTT+TKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR++ +  ++ V  LH
Sbjct:   15 PSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLH 128

[Close]

BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294])

HSP 1 Score: 104.76 bits (260), Expect = 1.074e-26
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 3

Query:  384 HKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNP 593
             KDTT+TKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFV+ + +    +    P+P
Sbjct:    3 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVSARGARTCRR----PSP 68

[Close]

BLAST of RNA-binding protein vs. Ensembl Mouse
Match: Rbm38 (RNA binding motif protein 38 [Source:MGI Symbol;Acc:MGI:1889294])

HSP 1 Score: 86.6557 bits (213), Expect = 1.186e-20
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 3

Query:  351 PANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTG 518
            P+     M    KDTT+TKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTG
Sbjct:   15 PSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 70

[Close]

BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q6DIV4|RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.898e-44
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSL-VDNLH 689
            M  + KDTT+TKIFVGGLPYHTTD +LR YFE FG+++EAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPRN+ S  ++ V  LH
Sbjct:    1 MHTVQKDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIGVQQLH 107

[Close]

BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q5ZJX4|RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.183e-44
Identity = 73/107 (68.22%), Postives = 85/107 (79.44%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSL-VDNLH 689
            M  + KDTT+TKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR++ +  ++ V  LH
Sbjct:    1 MHTVQKDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSIQTGFTIGVQQLH 107

[Close]

BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q76LC6|RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.330e-43
Identity = 75/107 (70.09%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  +H
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQIH 107

[Close]

BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q9BX46|RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.497e-43
Identity = 76/107 (71.03%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  LH
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLH 107

[Close]

BLAST of RNA-binding protein vs. UniProt/SwissProt
Match: sp|Q9I8B3|RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.510e-43
Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  +H
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIH 107

[Close]

BLAST of RNA-binding protein vs. TrEMBL
Match: A0A1I8FVG7 (RRM domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig029889g3 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.463e-46
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 3

Query:  384 HKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVP 659
             KDTTYTKIFVGGLPYHT+DETLR+YFE FGELEEAVVITDR T KSRGYGFVTMK  EDA KAI +PNPCIDGRK NVNLA++GAKPR++P
Sbjct:   13 QKDTTYTKIFVGGLPYHTSDETLRSYFEQFGELEEAVVITDRNTNKSRGYGFVTMKRPEDAFKAIQEPNPCIDGRKANVNLAVIGAKPRSIP 104

[Close]

BLAST of RNA-binding protein vs. TrEMBL
Match: A0A183AEQ8 (RRM domain-containing protein OS=Echinostoma caproni OX=27848 GN=ECPE_LOCUS5443 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.119e-46
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = 3

Query:  369 QMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMN-SLVDNL 686
             +SHL KDTT TKIFVGGLPYHTTD++LR +FE FG +EEAVVITDRQTGKSRGYGFVTM  SEDA  AI DPNPCIDGRK NVNLA+LGAKPR +P    S +DN+
Sbjct:   48 SVSHLQKDTTLTKIFVGGLPYHTTDDSLRCFFEQFGPIEEAVVITDRQTGKSRGYGFVTMVRSEDALLAIRDPNPCIDGRKANVNLAVLGAKPRLMPGGGYSAIDNM 154

[Close]

BLAST of RNA-binding protein vs. TrEMBL
Match: A0A267EVC2 (RRM domain-containing protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig029889g1 PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.173e-46
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 3

Query:  384 HKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVP 659
             KDTTYTKIFVGGLPYHT+DETLR+YFE FGELEEAVVITDR T KSRGYGFVTMK  EDA KAI +PNPCIDGRK NVNLA++GAKPR++P
Sbjct:   13 QKDTTYTKIFVGGLPYHTSDETLRSYFEQFGELEEAVVITDRNTNKSRGYGFVTMKRPEDAFKAIQEPNPCIDGRKANVNLAVIGAKPRSIP 104

[Close]

BLAST of RNA-binding protein vs. TrEMBL
Match: A0A3R7CXU2 (RNA-binding protein 24 (Fragment) OS=Clonorchis sinensis OX=79923 GN=rbm24 PE=4 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.453e-46
Identity = 77/101 (76.24%), Postives = 85/101 (84.16%), Query Frame = 3

Query:  375 SHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSLV 677
             HL KDTT TKIFVGGLPYHTTD++LR +FE FG +EEAVVITDRQTGKSRGYGFVTM  SEDA  AI DPNPCIDGRK NVNLA+LGAKPR +P   S++
Sbjct:   63 GHLQKDTTLTKIFVGGLPYHTTDDSLRCFFEQFGPIEEAVVITDRQTGKSRGYGFVTMVRSEDALLAIRDPNPCIDGRKANVNLAVLGAKPRLMPGATSVL 163

[Close]

BLAST of RNA-binding protein vs. TrEMBL
Match: A0A0R3X9T8 (RRM domain-containing protein OS=Hydatigena taeniaeformis OX=6205 GN=TTAC_LOCUS10298 PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 6.428e-46
Identity = 74/94 (78.72%), Postives = 82/94 (87.23%), Query Frame = 3

Query:  387 KDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMN 668
            KDTT+TKIFVGGLPYHTTD +LR++FE FGE+EEAVVITDRQTGKSRGYGFVTM   EDA  AI+DPNPCIDGRK NVNLA+LGAKPR +   N
Sbjct:   25 KDTTFTKIFVGGLPYHTTDASLRSFFERFGEIEEAVVITDRQTGKSRGYGFVTMARYEDAINAIMDPNPCIDGRKANVNLAVLGAKPRTIAGGN 118

[Close]

BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: rbm24a (RNA binding motif protein 24 [Source:NCBI gene;Acc:103027480])

HSP 1 Score: 156.377 bits (394), Expect = 1.595e-44
Identity = 75/107 (70.09%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  +H
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQIH 107

[Close]

BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: rbm24a (RNA binding motif protein 24 [Source:NCBI gene;Acc:103027480])

HSP 1 Score: 156.377 bits (394), Expect = 2.852e-44
Identity = 75/107 (70.09%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  +H
Sbjct:   22 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQIH 128

[Close]

BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000016054.2 (RNA binding motif protein 38 [Source:NCBI gene;Acc:103039930])

HSP 1 Score: 147.132 bits (370), Expect = 4.534e-41
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 3

Query:  381 LHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV 656
            + KDTT+TKIFVGGLPYHT D +LR YFE +G+++EAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR++
Sbjct:   19 IQKDTTFTKIFVGGLPYHTNDASLRKYFEAYGDIDEAVVITDRQTGKSRGYGFVTMTDRVAAERACKDPNPIIDGRKANVNLAYLGAKPRSL 110

[Close]

BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: rbm38 (RNA-binding protein 38-like [Source:NCBI gene;Acc:107196932])

HSP 1 Score: 145.206 bits (365), Expect = 3.120e-40
Identity = 77/141 (54.61%), Postives = 90/141 (63.83%), Query Frame = 3

Query:  390 DTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSL-VDNLHNIDQANRFNTILSSSYSNPLL--NILYPTLQNNALLQPVL 803
            DTT+TKIFVGGLPYH TD +LR YF  FGE+ EAVVITDRQTGKSRGYGFVTM     A +A  DPNP IDGRK NVNLA LGAKPR+  +  S  +  +H      ++       Y   LL   +L+PT    A+  P L
Sbjct:   21 DTTFTKIFVGGLPYHATDASLREYFGSFGEISEAVVITDRQTGKSRGYGFVTMIEKAAAEQACKDPNPIIDGRKANVNLAYLGAKPRSPQTGYSTGMQQIHPALFQRQYELAQQFVYPQALLQPGLLFPTQVTTAVSSPYL 161

[Close]

BLAST of RNA-binding protein vs. Ensembl Cavefish
Match: ENSAMXT00000056649.1 (pep primary_assembly:Astyanax_mexicanus-2.0:APWO02002006.1:25715:26129:1 gene:ENSAMXG00000042924.1 transcript:ENSAMXT00000056649.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 104.375 bits (259), Expect = 4.892e-27
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 3

Query:  351 PANPEH----QMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVT 545
            PA P      +M    KDTT+TKIFVGGLPYHTTD +LR YFE FGE++EAVVITDRQTGKSRGYGFV+
Sbjct:    7 PAVPAEGLRVRMHSSQKDTTFTKIFVGGLPYHTTDCSLRKYFEVFGEIDEAVVITDRQTGKSRGYGFVS 75

[Close]

BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: rbm24a (RNA binding motif protein 24a [Source:NCBI gene;Acc:405801])

HSP 1 Score: 150.599 bits (379), Expect = 5.547e-43
Identity = 78/143 (54.55%), Postives = 93/143 (65.03%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLHNIDQANRFNTILSSSYSNPLLNILYPTLQNNALLQP 797
            M  + KDTT+TKIFVGGLPYHTTD +LR +FE FGE++EAVVITDRQ+GKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA +GAKPR + P     V  +          T +   Y  P    +YP     AL+QP
Sbjct:    2 MLSMQKDTTFTKIFVGGLPYHTTDASLRAFFEAFGEIDEAVVITDRQSGKSRGYGFVTMADRASAERACKDPNPIIDGRKANVNLAYIGAKPRVIQPGFAFGVQQIQ--------PTFIQRPYGIP-AQYVYP----QALMQP 131

[Close]

BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030])

HSP 1 Score: 71.633 bits (174), Expect = 1.139e-14
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            KIFVGG+   T ++ LR YF+ +G++E A V+ DR TGK RG+GFVT  + +   K I+     I+G K  V  A+
Sbjct:  101 KIFVGGIRDDTDEQHLREYFQVYGDVEAAEVMEDRSTGKKRGFGFVTFSDHDTVDKVIVQKYHTINGHKAEVRKAL 176

HSP 2 Score: 61.6178 bits (148), Expect = 3.299e-11
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 3

Query:  390 DTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNP-CIDGRKTNVNLAI 632
            D    K+F+GGL + TT++++R +FE +G L + VV+ D  T +SRG+GFVT    E+   A +D  P  +D R      AI
Sbjct:    5 DEQQRKLFIGGLSFETTEDSMRKHFEQWGTLTDCVVMRDPHTKRSRGFGFVTYTCPEEVD-AAMDARPHHLDNRVVEAKRAI 85

[Close]

BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000004893.1 (pep scaffold:Pmarinus_7.0:GL479484:4:2056:-1 gene:ENSPMAG00000004449.1 transcript:ENSPMAT00000004893.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 71.633 bits (174), Expect = 1.603e-14
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 3

Query:  381 LHKDTT---YTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            +HKD     + K+FVGGL + TT+E LR YFE +G L + VV+ D Q+ +SRG+GFVT  +  +   A+      IDGR      A+
Sbjct:    1 MHKDREPEQFRKLFVGGLSFETTEEGLRQYFEQWGSLTDCVVMKDTQSKRSRGFGFVTFSSMSEVDAAMSARPHKIDGRMVEPKRAV 87

HSP 2 Score: 62.7734 bits (151), Expect = 1.829e-11
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            KIFVGG+   T +E LR+YFE +G +E   V+T+R++GK RG+ FVT  + +   K ++     I+G    +  A+
Sbjct:  103 KIFVGGIKDDTDEEHLRDYFEKYGRIEIVEVMTERESGKKRGFAFVTFNDHDPVDKIVVQKYHTINGHNCEIRKAL 178

[Close]

BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030])

HSP 1 Score: 70.0922 bits (170), Expect = 1.782e-13
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI-------LGAKPR 650
            KIFVGG+  +T ++ LR+YF  +G +E   V+ DRQ+GK RG+GFVT  + +   K ++     I+G K  V  A+       LG  PR
Sbjct:  125 KIFVGGIKDNTDEDHLRDYFSEYGMVESVDVMEDRQSGKKRGFGFVTFSDHDAVDKVVVQKYHTINGHKAEVRKALSKQEMNSLGGDPR 213

HSP 2 Score: 66.6254 bits (161), Expect = 3.039e-12
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 3

Query:  378 HLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            H   D    K+F+GGL + TT+E+++ +FE +G L + VV+ D  T +SRG+GFVT  ++E+   A+      +DGR      AI
Sbjct:   25 HYSPDEQQRKLFIGGLSFETTEESMQKHFEQWGTLTDCVVMRDPHTKRSRGFGFVTYMSAEEVDAAMEVRPHHLDGRVVEAKRAI 109

[Close]

BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Match: HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033])

HSP 1 Score: 64.3142 bits (155), Expect = 6.283e-12
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRN 653
            K+F+GGL + TT+E+LR Y+E +G + + VV+ D  + +SRG+GF+T    E+   A+      +DGR      A+    PR+
Sbjct:   15 KLFIGGLSFETTEESLREYYEQWGTIVDCVVMKDPSSKRSRGFGFITYSVMEEVNSAMQARPHTVDGRVVEAKRAV----PRD 93

HSP 2 Score: 60.4622 bits (145), Expect = 1.168e-10
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 3

Query:  396 TYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            T  K+FVGG+  +T +  LR+YF  FG +E   ++TD+QTGK RG+ FVT  + +   + +      I+  K  V  A+
Sbjct:  102 TVKKLFVGGIKDNTDESHLRDYFSKFGRVESVDMVTDKQTGKKRGFAFVTFDDYDPVDQIVFQKFHTINCHKLEVRKAL 180

[Close]

BLAST of RNA-binding protein vs. Ensembl Yeast
Match: PUB1 (Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; implicated in regulation of translation; carries Q/N-rich domain at C- terminus, identified as candidate prion; human homolog Tia1 is critical for normal synaptic plasticity; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000004961])

HSP 1 Score: 60.077 bits (144), Expect = 2.591e-10
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = 3

Query:  327 RLLKNNEIPANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILD-PNPCIDGRKTNVNLA 629
            + ++NN +  N   Q      D T+  +FVG L  +  DETLRN F+ F       V+ D QTG SRGYGFV+  + +DA  A+       ++GR   +N A
Sbjct:  138 KQIENNIVKINWAFQSQQSSSDDTFN-LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 238

[Close]

BLAST of RNA-binding protein vs. Ensembl Yeast
Match: NSR1 (Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis; binds to single stranded telomeric DNA and mRNA; methylated by Hmt1p; interaction with Top1p and nucleolar localization are negatively regulated by polyphosphorylation [Source:SGD;Acc:S000003391])

HSP 1 Score: 57.7658 bits (138), Expect = 1.396e-9
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 3

Query:  408 IFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILD-PNPCIDGRKTNVNLA 629
            IFVG L +   DE L+  FE+ G +  A VI +R T +SRGYG+V  +N   A KAI +     IDGR  N +++
Sbjct:  170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMS 244

[Close]

BLAST of RNA-binding protein vs. Ensembl Yeast
Match: SNP1 (Component of U1 snRNP required for mRNA splicing via spliceosome; substrate of the arginine methyltransferase Hmt1p; may interact with poly(A) polymerase to regulate polyadenylation; homolog of human U1 70K protein; protein abundance increases in response to DNA replication stress [Source:SGD;Acc:S000001323])

HSP 1 Score: 55.8398 bits (133), Expect = 3.943e-9
Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 3

Query:  378 HLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKN 554
            H+     Y  IF+G LPY   +  L+ YF  FGE+E+  ++ D+ T KS+GY F+  K+
Sbjct:   99 HIKDTDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKD 157

[Close]

BLAST of RNA-binding protein vs. Ensembl Yeast
Match: HRP1 (Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability [Source:SGD;Acc:S000005483])

HSP 1 Score: 54.299 bits (129), Expect = 2.511e-8
Identity = 27/90 (30.00%), Postives = 51/90 (56.67%), Query Frame = 3

Query:  363 EHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
            E   + L K++   K+F+GGL + TT++ LR YF  +G + +  ++ D  TG+SRG+GF++ +    +   ++     +DG+  +   AI
Sbjct:  148 ERSKADLSKESC--KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS-SVDEVVKTQHILDGKVIDPKRAI 234

HSP 2 Score: 50.447 bits (119), Expect = 3.322e-7
Identity = 33/105 (31.43%), Postives = 57/105 (54.29%), Query Frame = 3

Query:  357 NPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNS 671
            +P+  +    +D T  KIFVGG+      +    +F  +G + +A ++ D+ TG+SRG+GFVT  +S DA   +   N  ID +  +  + I  A+PR++   +S
Sbjct:  229 DPKRAIPRDEQDKT-GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY-DSADAVDRVCQ-NKFIDFK--DRKIEIKRAEPRHMQQKSS 328

[Close]

BLAST of RNA-binding protein vs. Ensembl Yeast
Match: NOP13 (Nucleolar protein found in preribosomal complexes; contains an RNA recognition motif (RRM); relative distribution to the nucleolus increases upon DNA replication stress [Source:SGD;Acc:S000005119])

HSP 1 Score: 50.8322 bits (120), Expect = 2.415e-7
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 3

Query:  408 IFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPC--IDGR 608
            +FVG L +  TD+ LR +F++ G++ +  + T   +GK +G+ F+  KN E +T A+ D + C  I GR
Sbjct:  241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNALKDKS-CRKIAGR 308

[Close]

BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO40104 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S851])

HSP 1 Score: 112.849 bits (281), Expect = 1.907e-30
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 3

Query:  384 HKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPR 650
            ++DT +TK+FVGG+PY + D+ LR +F  FGE+ EAVVI DR T KS+GYGFVTM  S+ A  A  +  P I+GR+ NVNLA LGAKP+
Sbjct:    4 NQDTKFTKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNKRPMIEGRQANVNLAYLGAKPK 92

[Close]

BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO39879 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8S5])

HSP 1 Score: 72.0182 bits (175), Expect = 8.682e-15
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPC-IDGRKTNVNLAILGAKPRNVPS 662
            K+F+GGL + TT E LR +FE FGEL+E VV+ D  T +SRG+GF+T K+ + A   +L+     +DG+K +  LA+    P+  P+
Sbjct:    1 KMFIGGLSWQTTAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPK-AVDVVLNSGAQELDGKKIDPKLAV----PKRAPA 82

HSP 2 Score: 62.003 bits (149), Expect = 2.674e-11
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 3

Query:  393 TTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLA 629
            TT  KIF+GGL  +T++E ++ YF  FG++ E +++ D+ T + RG+GFVT ++   A KA       I+ +K  V  A
Sbjct:   86 TTTKKIFIGGLSTNTSEEDMKKYFSQFGKITETMLMFDKATQRHRGFGFVTFESENSADKACDTQYHLINNKKVEVKKA 164

[Close]

BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO36522 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SIF0])

HSP 1 Score: 69.707 bits (169), Expect = 6.903e-14
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = 3

Query:  402 TKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNP-----CIDGRKTNVNLAILGAKPRNVPSMNS 671
             K+FVGGL   TT+ETLR YFE +GEL + VVI D  T KSRG+G+VT  + +  T+ +L          IDG++  V  AI    PR+  S  S
Sbjct:   14 AKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYK-VTRNVLKDKVENGAHRIDGKEVEVKRAI----PRDDNSATS 103

[Close]

BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO29715 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7T2V2])

HSP 1 Score: 65.855 bits (159), Expect = 9.959e-14
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 3

Query:  408 IFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPN-PCIDGRKTNVN 623
            IFVG LP+   +  LR +FE +G ++   +I+D+ TG+S+G+GFV M N  +A KAI + N   ++GR   VN
Sbjct:    3 IFVGSLPFSIEEADLRGFFEEYGAVDSVKIISDKFTGRSKGFGFVEMPNDAEAQKAIDELNGGTVEGRTIVVN 75

[Close]

BLAST of RNA-binding protein vs. Ensembl Nematostella
Match: EDO33402 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SSE0])

HSP 1 Score: 64.3142 bits (155), Expect = 9.598e-13
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 3

Query:  399 YTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCI-DGR 608
            + KIFVGGL   TT E L  YFE FGE+ + V++TD  T +SRG+GFVT ++     +++L   P I DG+
Sbjct:   13 FRKIFVGGLATSTTKEGLHQYFENFGEVTDCVLMTDPTTKRSRGFGFVTFRDPA-TIESVLAKKPHILDGK 82

[Close]

BLAST of RNA-binding protein vs. Ensembl Medaka
Match: rbm24a (RNA binding motif protein 24 [Source:NCBI gene;Acc:101163671])

HSP 1 Score: 154.836 bits (390), Expect = 5.240e-44
Identity = 75/107 (70.09%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTTYTKIFVGGLPYHTTD +LR YFE FGE+EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  +H
Sbjct:    1 MHTTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGVPQIH 107

[Close]

BLAST of RNA-binding protein vs. Ensembl Medaka
Match: rbm24b (RNA-binding protein 24 [Source:NCBI gene;Acc:101161576])

HSP 1 Score: 154.066 bits (388), Expect = 1.179e-43
Identity = 73/107 (68.22%), Postives = 81/107 (75.70%), Query Frame = 3

Query:  372 MSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNV-PSMNSLVDNLH 689
            M    KDTT+TKIFVGGLPYHTTD +LR YFE FG++EEAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR + P     V  +H
Sbjct:    2 MHSAQKDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRASADRACKDPNPIIDGRKANVNLAYLGAKPRVIQPGFAFGVPQIH 108

[Close]

BLAST of RNA-binding protein vs. Ensembl Medaka
Match: RBM38 (RNA-binding protein 38 [Source:NCBI gene;Acc:101160403])

HSP 1 Score: 150.214 bits (378), Expect = 5.056e-42
Identity = 70/98 (71.43%), Postives = 80/98 (81.63%), Query Frame = 3

Query:  381 LHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSL 674
            L KDTT+TKIFVGGLPYHT D +LR YFE FG+++EAVVITDRQTGKSRGYGFVTM +   A +A  DPNP IDGRK NVNLA LGAKPR++ +  SL
Sbjct:   19 LQKDTTFTKIFVGGLPYHTNDASLRKYFEAFGDIDEAVVITDRQTGKSRGYGFVTMTDRGAAERACKDPNPIIDGRKANVNLAYLGAKPRSIQTGISL 116

[Close]

BLAST of RNA-binding protein vs. Ensembl Medaka
Match: rbm38 (RNA-binding protein 38 [Source:NCBI gene;Acc:101156012])

HSP 1 Score: 147.517 bits (371), Expect = 5.264e-41
Identity = 69/105 (65.71%), Postives = 82/105 (78.10%), Query Frame = 3

Query:  381 LHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSLVDNLHNI 695
            + KDTTYTKIFVGGLPYHT+D +LR YFE FG+++EAVVITD+QTGKSRGYGFVTM +   A +A  D NP IDGRK NVNLA LGAKPR+  S ++L   +  I
Sbjct:   22 MEKDTTYTKIFVGGLPYHTSDASLRKYFETFGDIDEAVVITDKQTGKSRGYGFVTMVDRAAAEQACKDANPIIDGRKANVNLAYLGAKPRS--SHSTLSGGVQQI 124

[Close]

BLAST of RNA-binding protein vs. Ensembl Medaka
Match: hnrnpaba (heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:101162934])

HSP 1 Score: 67.781 bits (164), Expect = 5.624e-12
Identity = 30/93 (32.26%), Postives = 52/93 (55.91%), Query Frame = 3

Query:  354 ANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAI 632
             N   Q+     +    K+FVGGL + T+ + L++YF  FGE+ +  +  D+QTG+SRG+GF+  K++    K +      +DGR+ +   A+
Sbjct:   71 GNEGGQIDASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDQQTGRSRGFGFILFKDAASVDKVLEQKEHRLDGRQIDPKRAM 163

[Close]

BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000040788.1 (SMESG000040788.1)

HSP 1 Score: 485.337 bits (1248), Expect = 1.736e-172
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 3

Query:  267 MNYXXXXXXXXXXXXXENLKRLLKNNEIPANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSLVDNLHNIDQANRFNTILSSSYSNPLLNILYPTLQNNALLQPVLSQCPYTXXXXXXXXXXXXXXXXXXCYLNLLGNPSAEQYLTSNLAFNNCQKVPNSPQLVHINSNNKVFLKSEQSNPINFPIVQLQSPSIIYPKMPFHN 1094
            MNYSSSSSSPSPCKSSENLKRLLKNNEIPANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSLVDNLHNIDQANRFNTILSSSYSNPLLNILYPTLQNNALLQPVLSQCPYTNPILNHSINIPIISPNNNCYLNLLGNPSAEQYLTSNLAFNNCQKVPNSPQLVHINSNNKVFLKSEQSNPINFPIVQLQSPSIIYPKMPFHN
Sbjct:    1 MNYSSSSSSPSPCKSSENLKRLLKNNEIPANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSLVDNLHNIDQANRFNTILSSSYSNPLLNILYPTLQNNALLQPVLSQCPYTNPILNHSINIPIISPNNNCYLNLLGNPSAEQYLTSNLAFNNCQKVPNSPQLVHINSNNKVFLKSEQSNPINFPIVQLQSPSIIYPKMPFHN 276

[Close]

BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000006741.1 (SMESG000006741.1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-49
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 3

Query:  342 NEIPANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMN 668
            N  P N +H     HKDTT TKIFVGGLPYHTTDE+LR +FE FG +EEAVVITDRQ+GKSRGYGFVTM N EDA +AI +PNPCIDGRK NVNLAILGAKPR +P +N
Sbjct:   19 NSKPTNNQH-----HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVN 122

[Close]

BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000006741.1 (SMESG000006741.1)

HSP 1 Score: 168.703 bits (426), Expect = 1.144e-48
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 3

Query:  342 NEIPANPEHQMSHLHKDTTYTKIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMN 668
            N  P N +H     HKDTT TKIFVGGLPYHTTDE+LR +FE FG +EEAVVITDRQ+GKSRGYGFVTM N EDA +AI +PNPCIDGRK NVNLAILGAKPR +P +N
Sbjct:   19 NSKPTNNQH-----HKDTTLTKIFVGGLPYHTTDESLRVFFECFGPIEEAVVITDRQSGKSRGYGFVTMVNCEDAYRAISNPNPCIDGRKANVNLAILGAKPRILPGVN 122

[Close]

BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000020492.1 (SMESG000020492.1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.441e-14
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNP-CIDGRKTNVNLAILGAKPRNVPSMNSLVDNL 686
            K+F+GGL   T D++LRNYF+ FG +E+ VV+ D +TG+SRG+G++   + E   + +L+  P  +DG+  +V    +  K RN  S+   V  +
Sbjct:   11 KVFIGGLSQATNDDSLRNYFDQFGSIEDCVVMMDNKTGRSRGFGYIKF-HEESTVRTVLEEGPHLLDGKIVDVKQCNIHMKGRNRRSLKIFVGGI 104

[Close]

BLAST of RNA-binding protein vs. Planmine SMEST
Match: SMESG000045507.1 (SMESG000045507.1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.634e-13
Identity = 35/102 (34.31%), Postives = 59/102 (57.84%), Query Frame = 3

Query:  405 KIFVGGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDATKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSLVDNLHNIDQANR 710
            K+F+GGL  HTT ETLRNYF+ +G++++ +++ D  T +SRG+GFVT  +     K +L+    +D +K +  +AI        P    L+D   N ++  +
Sbjct:   18 KLFIGGLSPHTTLETLRNYFQNYGDIKDVMILKDPVTKRSRGFGFVTFIDYSTIEKILLNSPHFLDSKKIDPKIAI--------PKKPELIDKAINTEKTRK 111

The following BLAST results are available for this feature:

BLAST of RNA-binding protein vs. Ensembl Human
BLAST of RNA-binding protein vs. Ensembl Celegans
BLAST of RNA-binding protein vs. Ensembl Fly
BLAST of RNA-binding protein vs. Ensembl Zebrafish
BLAST of RNA-binding protein vs. Ensembl Xenopus
BLAST of RNA-binding protein vs. Ensembl Mouse
BLAST of RNA-binding protein vs. UniProt/SwissProt
BLAST of RNA-binding protein vs. TrEMBL
BLAST of RNA-binding protein vs. Ensembl Cavefish
BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
BLAST of RNA-binding protein vs. Ensembl Yeast
BLAST of RNA-binding protein vs. Ensembl Nematostella
BLAST of RNA-binding protein vs. Ensembl Medaka
BLAST of RNA-binding protein vs. Planmine SMEST

BLAST of RNA-binding protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
RBM24	3.117e-44	71.03	RNA binding motif protein 24 [Source:HGNC Symbol;A...	[more]
RBM38	4.769e-44	68.22	RNA binding motif protein 38 [Source:HGNC Symbol;A...	[more]
RBM38	1.411e-43	74.19	RNA binding motif protein 38 [Source:HGNC Symbol;A...	[more]
RBM38	1.516e-43	68.22	RNA binding motif protein 38 [Source:HGNC Symbol;A...	[more]
RBM24	1.588e-20	66.67	RNA binding motif protein 24 [Source:HGNC Symbol;A...	[more]

BLAST of RNA-binding protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
sup-12	1.511e-40	73.86	SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189]	[more]
sup-12	6.815e-40	51.80	SUPpressor [Source:UniProtKB/TrEMBL;Acc:O45189]	[more]
msi-1	1.791e-11	38.16	MuSashI (Fly neural) family; Neural RNA-binding pr...	[more]
tiar-1	2.609e-11	40.20	TIA-1/TIAL RNA binding protein homolog [Source:Un...	[more]
tiar-1	5.630e-11	40.20	TIA-1/TIAL RNA binding protein homolog [Source:Un...	[more]

BLAST of RNA-binding protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rbp6	3.603e-12	38.16	gene:FBgn0260943 transcript:FBtr0113427	[more]
Rbp6	3.720e-12	38.16	gene:FBgn0260943 transcript:FBtr0075285	[more]
Rbp6	4.422e-12	38.16	gene:FBgn0260943 transcript:FBtr0333861	[more]
Rbp6	4.801e-11	46.88	gene:FBgn0260943 transcript:FBtr0290066	[more]
Rbp6	6.261e-11	48.33	gene:FBgn0260943 transcript:FBtr0113428	[more]

BLAST of RNA-binding protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbm24a	7.423e-45	77.42	RNA binding motif protein 24a [Source:NCBI gene;Ac...	[more]
rbm24a	1.762e-44	70.09	RNA binding motif protein 24a [Source:NCBI gene;Ac...	[more]
rbm24b	7.199e-44	70.09	RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB...	[more]
rbm24b	2.705e-43	77.42	RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB...	[more]
rbm24b	5.527e-43	77.42	RNA binding motif protein 24b [Source:ZFIN;Acc:ZDB...	[more]

BLAST of RNA-binding protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
nxph2	9.246e-45	69.16	neurexophilin 2 [Source:Xenbase;Acc:XB-GENE-951506...	[more]
rbm24	1.288e-43	69.16	RNA binding motif protein 24 [Source:NCBI gene;Acc...	[more]
cirbp	6.020e-16	46.05	cold inducible RNA binding protein [Source:NCBI ge...	[more]
cirbp	6.496e-16	46.05	cold inducible RNA binding protein [Source:NCBI ge...	[more]
cirbp	6.547e-16	46.05	cold inducible RNA binding protein [Source:NCBI ge...	[more]

BLAST of RNA-binding protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Rbm24	7.923e-44	70.09	RNA binding motif protein 24 [Source:MGI Symbol;Ac...	[more]
Rbm38	4.327e-41	64.91	RNA binding motif protein 38 [Source:MGI Symbol;Ac...	[more]
Rbm38	4.327e-41	64.91	RNA binding motif protein 38 [Source:MGI Symbol;Ac...	[more]
Rbm38	1.074e-26	67.14	RNA binding motif protein 38 [Source:MGI Symbol;Ac...	[more]
Rbm38	1.186e-20	69.64	RNA binding motif protein 38 [Source:MGI Symbol;Ac...	[more]

BLAST of RNA-binding protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q6DIV4\|RBM38_XENTR	4.898e-44	69.16	RNA-binding protein 38 OS=Xenopus tropicalis OX=83...	[more]
sp\|Q5ZJX4\|RBM38_CHICK	8.183e-44	68.22	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN...	[more]
sp\|Q76LC6\|RBM24_DANRE	1.330e-43	70.09	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=r...	[more]
sp\|Q9BX46\|RBM24_HUMAN	1.497e-43	71.03	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=...	[more]
sp\|Q9I8B3\|RB24B_XENLA	3.510e-43	69.16	RNA-binding protein 24-B OS=Xenopus laevis OX=8355...	[more]

BLAST of RNA-binding protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A1I8FVG7	1.463e-46	82.61	RRM domain-containing protein OS=Macrostomum ligna...	[more]
A0A183AEQ8	2.119e-46	74.77	RRM domain-containing protein OS=Echinostoma capro...	[more]
A0A267EVC2	2.173e-46	82.61	RRM domain-containing protein OS=Macrostomum ligna...	[more]
A0A3R7CXU2	5.453e-46	76.24	RNA-binding protein 24 (Fragment) OS=Clonorchis si...	[more]
A0A0R3X9T8	6.428e-46	78.72	RRM domain-containing protein OS=Hydatigena taenia...	[more]

BLAST of RNA-binding protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbm24a	1.595e-44	70.09	RNA binding motif protein 24 [Source:NCBI gene;Acc...	[more]
rbm24a	2.852e-44	70.09	RNA binding motif protein 24 [Source:NCBI gene;Acc...	[more]
ENSAMXT00000016054.2	4.534e-41	71.74	RNA binding motif protein 38 [Source:NCBI gene;Acc...	[more]
rbm38	3.120e-40	54.61	RNA-binding protein 38-like [Source:NCBI gene;Acc:...	[more]
ENSAMXT00000056649.1	4.892e-27	71.01	pep primary_assembly:Astyanax_mexicanus-2.0:APWO02...	[more]

BLAST of RNA-binding protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbm24a	5.547e-43	54.55	RNA binding motif protein 24a [Source:NCBI gene;Ac...	[more]
HNRNPA0	1.139e-14	43.42	heterogeneous nuclear ribonucleoprotein A0 [Source...	[more]
ENSPMAT00000004893.1	1.603e-14	41.38	pep scaffold:Pmarinus_7.0:GL479484:4:2056:-1 gene:...	[more]
HNRNPA0	1.782e-13	39.33	heterogeneous nuclear ribonucleoprotein A0 [Source...	[more]
HNRNPA2B1	6.283e-12	36.14	heterogeneous nuclear ribonucleoprotein A2/B1 [Sou...	[more]

BLAST of RNA-binding protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 5


Match Name	E-value	Identity	Description
PUB1	2.591e-10	36.27	Poly (A)+ RNA-binding protein; abundant mRNP-compo...	[more]
NSR1	1.396e-9	42.67	Nucleolar protein that binds nuclear localization ...	[more]
SNP1	3.943e-9	38.98	Component of U1 snRNP required for mRNA splicing v...	[more]
HRP1	2.511e-8	30.00	Subunit of cleavage factor I; cleavage factor I is...	[more]
NOP13	2.415e-7	36.23	Nucleolar protein found in preribosomal complexes;...	[more]

BLAST of RNA-binding protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO40104	1.907e-30	57.30	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO39879	8.682e-15	42.53	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO36522	6.903e-14	44.21	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO29715	9.959e-14	42.47	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO33402	9.598e-13	46.48	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of RNA-binding protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
rbm24a	5.240e-44	70.09	RNA binding motif protein 24 [Source:NCBI gene;Acc...	[more]
rbm24b	1.179e-43	68.22	RNA-binding protein 24 [Source:NCBI gene;Acc:10116...	[more]
RBM38	5.056e-42	71.43	RNA-binding protein 38 [Source:NCBI gene;Acc:10116...	[more]
rbm38	5.264e-41	65.71	RNA-binding protein 38 [Source:NCBI gene;Acc:10115...	[more]
hnrnpaba	5.624e-12	32.26	heterogeneous nuclear ribonucleoprotein A/B [Sourc...	[more]

BLAST of RNA-binding protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000040788.1	1.736e-172	100.00	SMESG000040788.1	[more]
SMESG000006741.1	1.364e-49	73.39	SMESG000006741.1	[more]
SMESG000006741.1	1.144e-48	73.39	SMESG000006741.1	[more]
SMESG000020492.1	1.441e-14	36.84	SMESG000020492.1	[more]
SMESG000045507.1	3.634e-13	34.31	SMESG000045507.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30029150 ID=SMED30029150|Name=RNA-binding protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1386bp
GAGCATATATGAAGATAGCAGATAACAATAGTAAAACAAAACTTGTAAAT
GATTGGTGAATATCAGTCATTTTTGCTAGGTTTTACACAAGAGGTTTCTT
CAACTGAAACATTTATAACACACCGTTTTGCATCAACTTGACACAGTTGA
AATAATTCATCAAAAATAACGGTTGATAAAGACATACATATATAGATATA
TATACATATACAATATTTTTACAGAAAATTTCTGAATCAGTTTTTCAAAG
AAAGCCGTATTTAATCATGAATTATTCCTCCTCATCGTCGTCACCTAGTC
CGTGTAAATCCAGCGAAAATCTAAAACGACTTCTTAAAAACAACGAAATC
CCGGCGAATCCTGAACACCAAATGTCTCATTTGCATAAAGATACTACGTA
CACGAAGATTTTTGTTGGCGGTTTGCCTTATCATACGACAGACGAAACTT
TGAGAAATTATTTCGAATATTTCGGTGAGCTTGAAGAAGCAGTTGTCATT
ACCGATAGACAAACTGGAAAAAGTCGCGGATATGGTTTCGTAACCATGAA
AAATTCAGAAGACGCAACGAAAGCAATCTTAGATCCCAATCCTTGTATTG
ATGGAAGAAAAACAAATGTAAATTTAGCAATTCTTGGAGCCAAACCAAGA
AATGTCCCAAGTATGAATTCACTTGTGGATAATCTCCACAACATTGATCA
AGCTAATAGATTCAATACAATATTATCAAGCAGCTATTCAAATCCGTTAT
TAAACATTTTGTATCCGACATTGCAAAATAACGCATTGCTACAGCCGGTC
TTATCCCAATGTCCGTATACAAATCCAATCTTGAACCATTCAATAAATAT
CCCTATCATTTCTCCCAATAACAATTGTTACCTAAATTTACTTGGCAATC
CGTCTGCTGAACAATATTTGACCTCCAATTTGGCTTTTAATAACTGTCAA
AAAGTGCCAAATAGTCCACAATTAGTACATATCAATTCAAATAATAAAGT
GTTTTTAAAATCAGAGCAATCAAATCCTATAAATTTCCCAATTGTCCAGT
TGCAATCTCCCTCCATCATTTATCCGAAAATGCCATTCCATAATTGAATG
TTTTACTGAATTGAGGAATCTATTGATATTTTGTCCACGTTTCTGAAATA
CAAACTTATATTCATTTATTGAAGAGATTGACAGTTATTTTGTTGCATGA
ATTGTTTTAACCAATGTATTATTTGATATTTTGATAACTGTCTTACCGAA
TTTATGTGCAGGAGGGTTAAAGAAAGTGTTTATATTTTTTAAAAATTTTA
AATAATATTTGAATATGTTGGTGTACTGGGTGAAATTAGTTTGTTTAAAT
CGGTAGAAGATCCACTCTACCTACTCTATTCAACCG

protein sequence of SMED30029150-orf-1

>SMED30029150-orf-1 ID=SMED30029150-orf-1|Name=SMED30029150-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=277bp
MNYSSSSSSPSPCKSSENLKRLLKNNEIPANPEHQMSHLHKDTTYTKIFV
GGLPYHTTDETLRNYFEYFGELEEAVVITDRQTGKSRGYGFVTMKNSEDA
TKAILDPNPCIDGRKTNVNLAILGAKPRNVPSMNSLVDNLHNIDQANRFN
TILSSSYSNPLLNILYPTLQNNALLQPVLSQCPYTNPILNHSINIPIISP
NNNCYLNLLGNPSAEQYLTSNLAFNNCQKVPNSPQLVHINSNNKVFLKSE
QSNPINFPIVQLQSPSIIYPKMPFHN*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **molecular function**
Term	Definition
GO:0003723	RNA binding
GO:0003729	mRNA binding
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000034	epidermis
PLANA:0000054	dorsal region of the epidermis
PLANA:0000099	neuron
PLANA:0000418	head
PLANA:0002032	epidermal cell

Vocabulary: **INTERPRO**
Term	Definition
IPR037366	BOULE/DAZ
IPR035979	RBD_domain_sf
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 47..119 e-value: 4.9E-26 score: 102.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 48..104 e-value: 7.8E-19 score: 67.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 46..123 score: 18.189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 12..129 e-value: 7.7E-27 score: 95.8
None	No IPR available	PANTHER	PTHR11176:SF22		coord: 38..134
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 46..121 e-value: 1.15661E-47 score: 151.229
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 38..134
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 41..122