SMED30029123
Overview
Neoblast Clusters
Zeng et. al., 2018
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny AppEmbryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30029123 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 7
Homology
BLAST of SMED30029123 vs. Ensembl Mouse
Match: Senp8 (SUMO/sentrin specific peptidase 8 [Source:MGI Symbol;Acc:MGI:1918849]) HSP 1 Score: 46.9802 bits (110), Expect = 3.790e-6 Identity = 45/179 (25.14%), Postives = 73/179 (40.78%), Query Frame = 3 Query: 99 SIRDPKIWFTDDDI----DYFLDSHIRNSDFAPIKCFIVDILR------TNPNE-DIFPIPETVFKAQIILCPLN------IDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPY-ICAYAMMISREWQRFPEGFVEII 581 S+ DP W D I +YF +S D + CFI + ++P E +F P + +++ +N +HW L VY ++ + ++ D H SN HA Q+ L K QEN+YDCG Y IC + ++R PE ++++ Sbjct: 19 SLLDPPSWLNDHIIGFAFEYFANSQFH--DCSDHVCFISPEVTQFIKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYD-----SHSRSNSIHAKQVAEKLKAFLGSKGDKLVFVEEKAPAQENSYDCGMYVICNTEALCQSLFRRQPESPLQLL 190
BLAST of SMED30029123 vs. Ensembl Mouse
Match: Senp8 (SUMO/sentrin specific peptidase 8 [Source:MGI Symbol;Acc:MGI:1918849]) HSP 1 Score: 46.9802 bits (110), Expect = 4.615e-6 Identity = 45/179 (25.14%), Postives = 73/179 (40.78%), Query Frame = 3 Query: 99 SIRDPKIWFTDDDI----DYFLDSHIRNSDFAPIKCFIVDILR------TNPNE-DIFPIPETVFKAQIILCPLN------IDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPY-ICAYAMMISREWQRFPEGFVEII 581 S+ DP W D I +YF +S D + CFI + ++P E +F P + +++ +N +HW L VY ++ + ++ D H SN HA Q+ L K QEN+YDCG Y IC + ++R PE ++++ Sbjct: 19 SLLDPPSWLNDHIIGFAFEYFANSQFH--DCSDHVCFISPEVTQFIKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYD-----SHSRSNSIHAKQVAEKLKAFLGSKGDKLVFVEEKAPAQENSYDCGMYVICNTEALCQSLFRRQPESPLQLL 190
BLAST of SMED30029123 vs. Ensembl Mouse
Match: Senp8 (SUMO/sentrin specific peptidase 8 [Source:MGI Symbol;Acc:MGI:1918849]) HSP 1 Score: 46.9802 bits (110), Expect = 4.615e-6 Identity = 45/179 (25.14%), Postives = 73/179 (40.78%), Query Frame = 3 Query: 99 SIRDPKIWFTDDDI----DYFLDSHIRNSDFAPIKCFIVDILR------TNPNE-DIFPIPETVFKAQIILCPLN------IDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPY-ICAYAMMISREWQRFPEGFVEII 581 S+ DP W D I +YF +S D + CFI + ++P E +F P + +++ +N +HW L VY ++ + ++ D H SN HA Q+ L K QEN+YDCG Y IC + ++R PE ++++ Sbjct: 19 SLLDPPSWLNDHIIGFAFEYFANSQFH--DCSDHVCFISPEVTQFIKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYD-----SHSRSNSIHAKQVAEKLKAFLGSKGDKLVFVEEKAPAQENSYDCGMYVICNTEALCQSLFRRQPESPLQLL 190
BLAST of SMED30029123 vs. Ensembl Mouse
Match: Senp8 (SUMO/sentrin specific peptidase 8 [Source:MGI Symbol;Acc:MGI:1918849]) HSP 1 Score: 46.9802 bits (110), Expect = 4.615e-6 Identity = 45/179 (25.14%), Postives = 73/179 (40.78%), Query Frame = 3 Query: 99 SIRDPKIWFTDDDI----DYFLDSHIRNSDFAPIKCFIVDILR------TNPNE-DIFPIPETVFKAQIILCPLN------IDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPY-ICAYAMMISREWQRFPEGFVEII 581 S+ DP W D I +YF +S D + CFI + ++P E +F P + +++ +N +HW L VY ++ + ++ D H SN HA Q+ L K QEN+YDCG Y IC + ++R PE ++++ Sbjct: 19 SLLDPPSWLNDHIIGFAFEYFANSQFH--DCSDHVCFISPEVTQFIKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYD-----SHSRSNSIHAKQVAEKLKAFLGSKGDKLVFVEEKAPAQENSYDCGMYVICNTEALCQSLFRRQPESPLQLL 190
BLAST of SMED30029123 vs. Ensembl Mouse
Match: Senp8 (SUMO/sentrin specific peptidase 8 [Source:MGI Symbol;Acc:MGI:1918849]) HSP 1 Score: 46.9802 bits (110), Expect = 4.615e-6 Identity = 45/179 (25.14%), Postives = 73/179 (40.78%), Query Frame = 3 Query: 99 SIRDPKIWFTDDDI----DYFLDSHIRNSDFAPIKCFIVDILR------TNPNE-DIFPIPETVFKAQIILCPLN------IDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPY-ICAYAMMISREWQRFPEGFVEII 581 S+ DP W D I +YF +S D + CFI + ++P E +F P + +++ +N +HW L VY ++ + ++ D H SN HA Q+ L K QEN+YDCG Y IC + ++R PE ++++ Sbjct: 19 SLLDPPSWLNDHIIGFAFEYFANSQFH--DCSDHVCFISPEVTQFIKCTSSPAEIAMFLEPLDLPHKRVVFLAINDNSNQAAGGTHWSLLVYLQDKNSFFHYD-----SHSRSNSIHAKQVAEKLKAFLGSKGDKLVFVEEKAPAQENSYDCGMYVICNTEALCQSLFRRQPESPLQLL 190
BLAST of SMED30029123 vs. TrEMBL
Match: G3AHZ2 (ULP_PROTEASE domain-containing protein OS=Spathaspora passalidarum (strain NRRL Y-27907 / 11-Y1) OX=619300 GN=SPAPADRAFT_148983 PE=4 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 3.119e-6 Identity = 55/192 (28.65%), Postives = 88/192 (45.83%), Query Frame = 3 Query: 66 INITCNDEKLFSIRDPKIWFTDDDIDYFLDSHIRN--SDFAPIKCFIVD--------ILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPI----FQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQE-NTYDCGPYICAYAMMI-SREWQRFPEGFVEIIRKEV 593 I IT D L +++D + W D+ IDY+L+ +++ FA F + + R + + P F+ +IL P+NI +HW L V T Y D + ++N H + M N++ + T HPH+ Q+ N YDCG + C A I SRE RF + ++IIR+ + Sbjct: 318 IEITTKD--LQTLQDGR-WLNDNIIDYYLNLIMKDYPKVFAWTTHFYSNLETKGYKGVERWGKRKKLNP-----FEKDMILVPVNISSTHWALTVIDNVKATITYYDSLDSQSIGNTAAVTNLNHYM--NMEANRVGHAPVEYTLHPHHKQTPQQKNGYDCGVFTCTAAKFIASREGLRFGQRDMKIIRRRM 499
BLAST of SMED30029123 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 307.375 bits (786), Expect = 2.179e-96 Identity = 145/197 (73.60%), Postives = 165/197 (83.76%), Query Frame = 3 Query: 54 ADSTINITCNDEKLF-SIRDPKIWFTDDDIDYFLDSHIRNSDFAPIKCFIVDILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPYICAYAMMISREWQRFPEGFVEIIRKEVHQFNLFSQLKHPKISG 641 ADSTI I ++ L S RDP IWFTDDDID +L +HI + +FA I CFIV+ILRTNP ED+FPIPE VFKAQIILCPLNIDK+HWILFVYCK SLTSY+IDPI QYRH+ NKT+ALQ+TMALNQLFNLKAAMTFHPH +FL+QEN+YDCGPYICAYAMMIS WQ FP+ F++IIRKEVHQ LF Q K K+SG Sbjct: 2332 ADSTIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSG 2528 HSP 2 Score: 304.679 bits (779), Expect = 2.242e-95 Identity = 137/179 (76.54%), Postives = 155/179 (86.59%), Query Frame = 3 Query: 105 RDPKIWFTDDDIDYFLDSHIRNSDFAPIKCFIVDILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPYICAYAMMISREWQRFPEGFVEIIRKEVHQFNLFSQLKHPKISG 641 RDP IWFTDDDID +L +HI + +FA I CFIV+ILRTNP ED+FPIPE VFKAQIILCPLNIDK+HWILFVYCK SLTSY+IDPI QYRH+ NKT+ALQ+TMALNQLFNLKAAMTFHPH +FL+QEN+YDCGPYICAYAMMIS WQ FP+ F++IIRKEVHQ LF Q K K+SG Sbjct: 4663 RDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSG 4841 HSP 3 Score: 204.527 bits (519), Expect = 1.831e-60 Identity = 88/174 (50.57%), Postives = 131/174 (75.29%), Query Frame = 3 Query: 78 CNDEKLFSIRDPKIWFTDDDIDYFLDSHIRNSDFAPIKCFIVDILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPYICAYAMMISREWQRFPEGFVEIIRKEVHQ 599 CN RDP+IWF+D+DID++L++HI N IKCFIV+IL +N E++ IP ++ A+++ CPLNI+ SHWILFVYCK+S +SY+IDPI + R+ L NK AL+I +ALN+ FNLK A++++PH + +Q N +DCGP+ CAYA++IS++ FP+GF++ IR++VH+ Sbjct: 184 CNKYLTIDNRDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHR 357
BLAST of SMED30029123 vs. Planmine SMEST
Match: SMESG000021486.1 (SMESG000021486.1) HSP 1 Score: 307.375 bits (786), Expect = 2.424e-96 Identity = 145/197 (73.60%), Postives = 165/197 (83.76%), Query Frame = 3 Query: 54 ADSTINITCNDEKLF-SIRDPKIWFTDDDIDYFLDSHIRNSDFAPIKCFIVDILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPYICAYAMMISREWQRFPEGFVEIIRKEVHQFNLFSQLKHPKISG 641 ADSTI I ++ L S RDP IWFTDDDID +L +HI + +FA I CFIV+ILRTNP ED+FPIPE VFKAQIILCPLNIDK+HWILFVYCK SLTSY+IDPI QYRH+ NKT+ALQ+TMALNQLFNLKAAMTFHPH +FL+QEN+YDCGPYICAYAMMIS WQ FP+ F++IIRKEVHQ LF Q K K+SG Sbjct: 2361 ADSTIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSG 2557 HSP 2 Score: 307.375 bits (786), Expect = 2.424e-96 Identity = 145/197 (73.60%), Postives = 165/197 (83.76%), Query Frame = 3 Query: 54 ADSTINITCNDEKLF-SIRDPKIWFTDDDIDYFLDSHIRNSDFAPIKCFIVDILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPYICAYAMMISREWQRFPEGFVEIIRKEVHQFNLFSQLKHPKISG 641 ADSTI I ++ L S RDP IWFTDDDID +L +HI + +FA I CFIV+ILRTNP ED+FPIPE VFKAQIILCPLNIDK+HWILFVYCK SLTSY+IDPI QYRH+ NKT+ALQ+TMALNQLFNLKAAMTFHPH +FL+QEN+YDCGPYICAYAMMIS WQ FP+ F++IIRKEVHQ LF Q K K+SG Sbjct: 4703 ADSTIKIIEINKPLNESDRDPTIWFTDDDIDLYLKNHISSLEFASINCFIVEILRTNPGEDLFPIPEKVFKAQIILCPLNIDKTHWILFVYCKNSLTSYFIDPILQYRHRFVNKTYALQVTMALNQLFNLKAAMTFHPHENFLYQENSYDCGPYICAYAMMISGVWQSFPDHFIDIIRKEVHQLQLFCQQKDQKVSG 4899 HSP 3 Score: 204.527 bits (519), Expect = 1.997e-60 Identity = 88/174 (50.57%), Postives = 131/174 (75.29%), Query Frame = 3 Query: 78 CNDEKLFSIRDPKIWFTDDDIDYFLDSHIRNSDFAPIKCFIVDILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPYICAYAMMISREWQRFPEGFVEIIRKEVHQ 599 CN RDP+IWF+D+DID++L++HI N IKCFIV+IL +N E++ IP ++ A+++ CPLNI+ SHWILFVYCK+S +SY+IDPI + R+ L NK AL+I +ALN+ FNLK A++++PH + +Q N +DCGP+ CAYA++IS++ FP+GF++ IR++VH+ Sbjct: 184 CNKYLTIDNRDPEIWFSDNDIDWYLETHIDNPMHGYIKCFIVNILCSNIQEEVVAIPRSISNAEMVFCPLNINNSHWILFVYCKKSHSSYFIDPILKNRNNLINKQMALKINIALNRFFNLKIAVSYNPHKNLQYQNNNFDCGPFTCAYAVIISKDLDNFPDGFIDEIRRDVHR 357
BLAST of SMED30029123 vs. Planmine SMEST
Match: SMESG000013454.1 (SMESG000013454.1) HSP 1 Score: 266.544 bits (680), Expect = 4.979e-83 Identity = 133/212 (62.74%), Postives = 164/212 (77.36%), Query Frame = 3 Query: 6 VPAXXXXXXXXXXXXXADSTINITCNDEKLFSIRDPKIWFTDDDIDYFLDSHIRNSDFAPIKCFIVDILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPYICAYAMMISREWQRFPEGFVEIIRKEVHQFNLFSQLKHPKISG 641 VPASVS S EET ADSTI F RDPKIWFTDDDIDY+L+SHI N +FAP+KCFIV+IL +N ++IFP+P+ +FKAQIILCPLNI++SHWI+FVYCK + SY++DPI + RH L NK+ AL+ITMALN LF+LKAA+TFHPH++ + Q+N YDCGPYICAYAM+IS+EWQ FP F+E IRK VH+F PK+SG Sbjct: 431 VPASVSISVPISEETDADSTI-----INYFFPERDPKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWIVFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVCQDNNYDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTSKFQNPPKVSG 637
BLAST of SMED30029123 vs. Planmine SMEST
Match: SMESG000078596.1 (SMESG000078596.1) HSP 1 Score: 266.159 bits (679), Expect = 2.313e-82 Identity = 124/196 (63.27%), Postives = 156/196 (79.59%), Query Frame = 3 Query: 54 ADSTINITCNDEKLFSIRDPKIWFTDDDIDYFLDSHIRNSDFAPIKCFIVDILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPYICAYAMMISREWQRFPEGFVEIIRKEVHQFNLFSQLKHPKISG 641 ADSTIN F RDPKIWFTDDDIDY+L+SHI N +FAP+KCFIV+IL +N ++IFP+P+ +FKAQIILCPLNI++SHWILFVYCK + SY++DPIF+ H L NK+ AL+ITMALN LF+LKAA+TFHPH++ ++Q+N YDCGP+ICAYAM+IS+EWQ FP F+E IRK VH+F PK+SG Sbjct: 80 ADSTINYY-----FFPERDPKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPIFRKWHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPHICAYAMLISQEWQTFPNNFIETIRKNVHRFQTSKFQNPPKVSG 270
BLAST of SMED30029123 vs. Planmine SMEST
Match: SMESG000044750.1 (SMESG000044750.1) HSP 1 Score: 264.618 bits (675), Expect = 2.103e-81 Identity = 123/196 (62.76%), Postives = 154/196 (78.57%), Query Frame = 3 Query: 54 ADSTINITCNDEKLFSIRDPKIWFTDDDIDYFLDSHIRNSDFAPIKCFIVDILRTNPNEDIFPIPETVFKAQIILCPLNIDKSHWILFVYCKESLTSYYIDPIFQYRHKLSNKTHALQITMALNQLFNLKAAMTFHPHNDFLFQENTYDCGPYICAYAMMISREWQRFPEGFVEIIRKEVHQFNLFSQLKHPKISG 641 ADSTI F RD KIWFTDDDIDY+L+SHI N +FAP+KCFIV+IL +N ++IFP+P+ +FKAQIILCPLNI++SHWILFVYCK + SY++DPI + RH L NK+ AL+ITMALN LF+LKAA+TFHPH++ ++Q+N YDCGPYICAYAM+IS+EWQ FP F+E IRK VH+F PK+SG Sbjct: 573 ADSTI-----INYFFPERDSKIWFTDDDIDYYLESHIGNPNFAPVKCFIVEILSSNCKDEIFPMPDNLFKAQIILCPLNINESHWILFVYCKLTKISYFVDPILRKRHNLINKSSALKITMALNNLFDLKAAVTFHPHDNLVYQDNNYDCGPYICAYAMLISQEWQTFPNNFIETIRKNVHRFQTTKFQNPPKVSG 763 The following BLAST results are available for this feature:
BLAST of SMED30029123 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30029123 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30029123 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30029123 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30029123 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30029123 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of SMED30029123 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30029123 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 1
BLAST of SMED30029123 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30029123 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30029123 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30029123 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30029123 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30029123 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30029123 ID=SMED30029123|Name=SMED30029123|organism=Schmidtea mediterranea sexual|type=transcript|length=641bpback to top protein sequence of SMED30029123-orf-1 >SMED30029123-orf-1 ID=SMED30029123-orf-1|Name=SMED30029123-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=213bp CVPASVSTSTSTMEETVADSTINITCNDEKLFSIRDPKIWFTDDDIDYFLback to top Annotated Terms
The following terms have been associated with this transcript:
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