RTR1-type domain-containing protein

Overview
NameRTR1-type domain-containing protein
Smed IDSMED30029114
Length (bp)1491
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of RTR1-type domain-containing protein (SMED30029114) t-SNE clustered cells

Violin plots show distribution of expression levels for RTR1-type domain-containing protein (SMED30029114) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of RTR1-type domain-containing protein (SMED30029114) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for RTR1-type domain-containing protein (SMED30029114) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30029114

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 3

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30029114h1SMcG0011285 SmedASXL_016054SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015
FACS sorted cell population asexual adult RNA-sequencing evidence
reproductive organSMED30029114h1SMcG0011285 Contig37318uc_Smed_v2PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30029114h1SMcG0011285 Contig37318newmark_estsPMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
BLAST of RTR1-type domain-containing protein vs. Ensembl Human
Match: RPAP2 (RNA polymerase II associated protein 2 [Source:HGNC Symbol;Acc:HGNC:25791])

HSP 1 Score: 72.7886 bits (177), Expect = 6.186e-13
Identity = 37/135 (27.41%), Postives = 67/135 (49.63%), Query Frame = 3
Query:   81 SIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGE 485
            ++R +   + +  +I+  L +  +  +F  E   F+      ++V+ER     CGY LC   + I P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W  +++  +  F L    ++G  GE
Sbjct:   47 AVRKKIEFERKALHIVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKISTKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEE-RHPDFQLLKEEQSGHSGE 180          
BLAST of RTR1-type domain-containing protein vs. Ensembl Celegans
Match: rpap-2 (Putative RNA polymerase II subunit B1 CTD phosphatase rpap-2 [Source:UniProtKB/Swiss-Prot;Acc:P30641])

HSP 1 Score: 49.2914 bits (116), Expect = 5.386e-6
Identity = 93/401 (23.19%), Postives = 160/401 (39.90%), Query Frame = 3
Query:  165 FRETLNFLCVPELEEIVEERISTNKCGYVLCNNLI-NIHPTAMFSLDISKRKIYNLS-NRKKYCSNWCYGAFKHICDQIPSEPLWKNK--DKITNKVFS------LYPSTETGCGGELYFDED----LYTDENSESDKIAK-KDYHETQQKCNPKKI---IQNINPQQLVNKPNDMTEN-----------PKRQETMKNVINSLDKLAINKKQTLEEVVNKIKTKAVNNQDRKLKIINEHLNDSDMILIPSDE--ESLFVLEKIKF-----LISSWITEETQDFICDS--PNYDLDEDLDNQDGTDDKPINNEECELLPTLDSEDEMTIRRNILIRKAKMACVPILGDFNIEPNNFLKEFEKLIYTCRLTAKNII-FSNKEFKWLII---VFVDLLSSKLG 1241
             +E L  L     +E+VEER    +CG+  C      I    MF +D  + KI+     R K+CS  CY     +  Q+   PLW     +  T KV+       + P  E     +  F ++    L TD       IAK +D   +++   PK +    Q+I P +L +   D  ++           P   + +K     +  L+   ++  +EV+ K++ K  N            L     ILI + E    L  +EK K      LI SW T ET+  + +   P     E +   D    K ++ E+   LP LD  +    R NI +   +   + +    ++ P        ++  T +L ++NI  ++ +E   ++I   + + L+  +LG
Sbjct:   34 LQEHLPHLHCLGWDEVVEERYVNKQCGFPSCQKAPPKITRNQMFEIDRKEGKIFEFRKQRAKFCSEMCYQKSSFVRKQLDEHPLWITGLTEARTQKVYEVPDESFVSPIAEKSEPVDSQFKKEPSIWLVTD-----SIIAKVQDMKLSEEAEEPKSLDPEDQDIEPFKLTDDDKDFIKSIKEFRNSNFGPPSTSKLLKTAPKPV--LSAKDRKKEDEVLAKLRAKYGNKN---------ALQKKPPILIEAQEIHSKLKTMEKAKEAWLVDLIKSWFTPETRKLVREGARPTGGAAEQI-LMDFLSGKKVDAEKLVNLPNLDKYNVKEKRLNIFLHSIRNHWMDLEARLHLTPTR-RDILSRVASTFQLDSENITGWTKREINSIVIALFIVICLVDVELG 416          
BLAST of RTR1-type domain-containing protein vs. Ensembl Celegans
Match: rpap-2 (Putative RNA polymerase II subunit B1 CTD phosphatase rpap-2 [Source:UniProtKB/Swiss-Prot;Acc:P30641])

HSP 1 Score: 49.2914 bits (116), Expect = 5.386e-6
Identity = 93/401 (23.19%), Postives = 160/401 (39.90%), Query Frame = 3
Query:  165 FRETLNFLCVPELEEIVEERISTNKCGYVLCNNLI-NIHPTAMFSLDISKRKIYNLS-NRKKYCSNWCYGAFKHICDQIPSEPLWKNK--DKITNKVFS------LYPSTETGCGGELYFDED----LYTDENSESDKIAK-KDYHETQQKCNPKKI---IQNINPQQLVNKPNDMTEN-----------PKRQETMKNVINSLDKLAINKKQTLEEVVNKIKTKAVNNQDRKLKIINEHLNDSDMILIPSDE--ESLFVLEKIKF-----LISSWITEETQDFICDS--PNYDLDEDLDNQDGTDDKPINNEECELLPTLDSEDEMTIRRNILIRKAKMACVPILGDFNIEPNNFLKEFEKLIYTCRLTAKNII-FSNKEFKWLII---VFVDLLSSKLG 1241
             +E L  L     +E+VEER    +CG+  C      I    MF +D  + KI+     R K+CS  CY     +  Q+   PLW     +  T KV+       + P  E     +  F ++    L TD       IAK +D   +++   PK +    Q+I P +L +   D  ++           P   + +K     +  L+   ++  +EV+ K++ K  N            L     ILI + E    L  +EK K      LI SW T ET+  + +   P     E +   D    K ++ E+   LP LD  +    R NI +   +   + +    ++ P        ++  T +L ++NI  ++ +E   ++I   + + L+  +LG
Sbjct:   34 LQEHLPHLHCLGWDEVVEERYVNKQCGFPSCQKAPPKITRNQMFEIDRKEGKIFEFRKQRAKFCSEMCYQKSSFVRKQLDEHPLWITGLTEARTQKVYEVPDESFVSPIAEKSEPVDSQFKKEPSIWLVTD-----SIIAKVQDMKLSEEAEEPKSLDPEDQDIEPFKLTDDDKDFIKSIKEFRNSNFGPPSTSKLLKTAPKPV--LSAKDRKKEDEVLAKLRAKYGNKN---------ALQKKPPILIEAQEIHSKLKTMEKAKEAWLVDLIKSWFTPETRKLVREGARPTGGAAEQI-LMDFLSGKKVDAEKLVNLPNLDKYNVKEKRLNIFLHSIRNHWMDLEARLHLTPTR-RDILSRVASTFQLDSENITGWTKREINSIVIALFIVICLVDVELG 416          
BLAST of RTR1-type domain-containing protein vs. Ensembl Fly
Match: CG34183 (gene:FBgn0085212 transcript:FBtr0112376)

HSP 1 Score: 80.1073 bits (196), Expect = 1.460e-17
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 3
Query:   63 NENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYP 458
             +  I ++  +++   R + I++ L +  +    F   L  +  P   +IV+ER     CGY LC+ ++   P   +S+  SK K+Y+++ RKK+CS +C+ A ++I  Q+P+ PLW  +D+ T   F L P
Sbjct:   10 RQQLIAAVVKKRAAIARAHEIVVRLLEPGIPEPEFLSLLCEIGPPNYSDIVDEREINKLCGYPLCSTVLENVPKQKYSISASKNKVYDITERKKFCSGYCFKASEYIKSQVPTSPLWL-RDRETRPSFQLLP 140          
BLAST of RTR1-type domain-containing protein vs. Ensembl Zebrafish
Match: rpap2 (RNA polymerase II associated protein 2 [Source:NCBI gene;Acc:554138])

HSP 1 Score: 60.8474 bits (146), Expect = 2.401e-9
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 3
Query:  213 VEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGE 485
            VEER     CGY +C N +   PT  + +     K+Y+++ RK +CSN+CY A K    QI   PLW  K++   ++  L    + G  G+
Sbjct:   85 VEERSIAKLCGYPMCPNKLTNVPTQQYKISTKTNKVYDITERKCFCSNFCYKASKSFELQISKIPLWLRKEESPPEI-KLMKQGDGGSSGQ 174          
BLAST of RTR1-type domain-containing protein vs. Ensembl Xenopus
Match: RPAP2 (RNA polymerase II associated protein 2 [Source:NCBI gene;Acc:100491941])

HSP 1 Score: 60.4622 bits (145), Expect = 4.500e-9
Identity = 25/75 (33.33%), Postives = 41/75 (54.67%), Query Frame = 3
Query:  189 CVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLW 413
            C    ++ VEER     CGY +C N +   P   + +     K+Y+++ RK +CSN+C+ A K+   Q+P  P+W
Sbjct:   72 CPGPYKDTVEERTIIQLCGYPVCQNRLENVPKQKYKISTKTNKVYDITERKCFCSNFCFRASKYYEAQLPKTPVW 146          
BLAST of RTR1-type domain-containing protein vs. Ensembl Mouse
Match: Rpap2 (RNA polymerase II associated protein 2 [Source:MGI Symbol;Acc:MGI:2141142])

HSP 1 Score: 70.0922 bits (170), Expect = 2.778e-12
Identity = 33/110 (30.00%), Postives = 56/110 (50.91%), Query Frame = 3
Query:  159 KFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGEL 488
            +F +E   F+      ++V+ER     CGY LC   + + P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W  +++     F L    ++G  GE+
Sbjct:   73 EFLKECGMFITPAHYSDVVDERSIIKLCGYPLCQKKLGVIPKQKYRISTKTNKVYDITERKSFCSNFCYRASKFFETQIPKTPVWVREEERPPD-FQLLKKGQSGSSGEV 181          
BLAST of RTR1-type domain-containing protein vs. Ensembl Mouse
Match: Rpap2 (RNA polymerase II associated protein 2 [Source:MGI Symbol;Acc:MGI:2141142])

HSP 1 Score: 69.707 bits (169), Expect = 3.207e-12
Identity = 33/110 (30.00%), Postives = 56/110 (50.91%), Query Frame = 3
Query:  159 KFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGEL 488
            +F +E   F+      ++V+ER     CGY LC   + + P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W  +++     F L    ++G  GE+
Sbjct:   73 EFLKECGMFITPAHYSDVVDERSIIKLCGYPLCQKKLGVIPKQKYRISTKTNKVYDITERKSFCSNFCYRASKFFETQIPKTPVWVREEERPPD-FQLLKKGQSGSSGEV 181          
BLAST of RTR1-type domain-containing protein vs. Ensembl Mouse
Match: Rpap2 (RNA polymerase II associated protein 2 [Source:MGI Symbol;Acc:MGI:2141142])

HSP 1 Score: 70.0922 bits (170), Expect = 3.287e-12
Identity = 33/110 (30.00%), Postives = 56/110 (50.91%), Query Frame = 3
Query:  159 KFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGEL 488
            +F +E   F+      ++V+ER     CGY LC   + + P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W  +++     F L    ++G  GE+
Sbjct:   73 EFLKECGMFITPAHYSDVVDERSIIKLCGYPLCQKKLGVIPKQKYRISTKTNKVYDITERKSFCSNFCYRASKFFETQIPKTPVWVREEERPPD-FQLLKKGQSGSSGEV 181          
BLAST of RTR1-type domain-containing protein vs. Ensembl Mouse
Match: Rpap2 (RNA polymerase II associated protein 2 [Source:MGI Symbol;Acc:MGI:2141142])

HSP 1 Score: 61.2326 bits (147), Expect = 1.489e-11
Identity = 26/77 (33.77%), Postives = 41/77 (53.25%), Query Frame = 3
Query:  183 FLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLW 413
            F+      ++V+ER     CGY LC   + + P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W
Sbjct:    2 FITPAHYSDVVDERSIIKLCGYPLCQKKLGVIPKQKYRISTKTNKVYDITERKSFCSNFCYRASKFFETQIPKTPVW 78          
BLAST of RTR1-type domain-containing protein vs. Ensembl Mouse
Match: Rpap2 (RNA polymerase II associated protein 2 [Source:MGI Symbol;Acc:MGI:2141142])

HSP 1 Score: 66.6254 bits (161), Expect = 2.848e-11
Identity = 31/102 (30.39%), Postives = 52/102 (50.98%), Query Frame = 3
Query:  183 FLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGEL 488
            F+      ++V+ER     CGY LC   + + P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W  +++     F L    ++G  GE+
Sbjct:    2 FITPAHYSDVVDERSIIKLCGYPLCQKKLGVIPKQKYRISTKTNKVYDITERKSFCSNFCYRASKFFETQIPKTPVWVREEERPPD-FQLLKKGQSGSSGEV 102          
BLAST of RTR1-type domain-containing protein vs. UniProt/SwissProt
Match: sp|A8DYY5|RPAP2_DROME (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Drosophila melanogaster OX=7227 GN=CG34183 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-16
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 3
Query:   63 NENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYP 458
             +  I ++  +++   R + I++ L +  +    F   L  +  P   +IV+ER     CGY LC+ ++   P   +S+  SK K+Y+++ RKK+CS +C+ A ++I  Q+P+ PLW  +D+ T   F L P
Sbjct:   10 RQQLIAAVVKKRAAIARAHEIVVRLLEPGIPEPEFLSLLCEIGPPNYSDIVDEREINKLCGYPLCSTVLENVPKQKYSISASKNKVYDITERKKFCSGYCFKASEYIKSQVPTSPLWL-RDRETRPSFQLLP 140          
BLAST of RTR1-type domain-containing protein vs. UniProt/SwissProt
Match: sp|F6RRD7|RPAP2_BOVIN (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Bos taurus OX=9913 GN=RPAP2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.952e-13
Identity = 39/135 (28.89%), Postives = 69/135 (51.11%), Query Frame = 3
Query:   81 SIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGE 485
            ++R +   + +  +I+  L +  +  +F RE   F+      ++V+ER     CGY LC N + I P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W  +++  +  F L    ++G  GE
Sbjct:   47 AVRKKIEFERKALHIVEQLLEENISEEFLRECGKFITPAHYSDVVDERSIIKLCGYPLCQNKLGIVPKQKYKISTKTNKVYDITERKCFCSNFCYKASKFFEAQIPKSPVWIREEE-RHPDFQLLQDGQSGPSGE 180          
BLAST of RTR1-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5I0E6|RPAP2_RAT (RNA polymerase II subunit B1 CTD phosphatase Rpap2 OS=Rattus norvegicus OX=10116 GN=Rpap2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.403e-13
Identity = 40/141 (28.37%), Postives = 68/141 (48.23%), Query Frame = 3
Query:  159 KFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGELYFDEDLYTDENSESDKIAKKDYHETQQKCNP 581
            +F +E   F+      ++V+ER     CGY LC   + + P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W  +++   + F L    ++GC GE+      + D  + +D  A   Y     +C P
Sbjct:   73 EFLKECGMFITPAHYSDVVDERAIIKLCGYPLCQKKLGVIPKQKYRISTKTNKVYDITERKSFCSNFCYKASKFFEAQIPKTPVWVREEERPPE-FQLLKKGQSGCSGEVV---QFFRDAVTAADVDA---YGAFDAQCEP 206          
BLAST of RTR1-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q5RA37|RPAP2_PONAB (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Pongo abelii OX=9601 GN=RPAP2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.721e-12
Identity = 37/135 (27.41%), Postives = 67/135 (49.63%), Query Frame = 3
Query:   81 SIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGE 485
            ++R +   + +  +I+  L +  +  +F  E   F+      ++V+ER     CGY LC   + I P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W  +++  +  F L    ++G  GE
Sbjct:   47 AVRKKIEFERKALHIVEQLLEENITEEFLMECGKFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKISTKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEE-RHPDFQLLKEQQSGHSGE 180          
BLAST of RTR1-type domain-containing protein vs. UniProt/SwissProt
Match: sp|Q8IXW5|RPAP2_HUMAN (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Homo sapiens OX=9606 GN=RPAP2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.971e-12
Identity = 37/135 (27.41%), Postives = 67/135 (49.63%), Query Frame = 3
Query:   81 SIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGE 485
            ++R +   + +  +I+  L +  +  +F  E   F+      ++V+ER     CGY LC   + I P   + +     K+Y+++ RK +CSN+CY A K    QIP  P+W  +++  +  F L    ++G  GE
Sbjct:   47 AVRKKIEFERKALHIVEQLLEENITEEFLMECGRFITPAHYSDVVDERSIVKLCGYPLCQKKLGIVPKQKYKISTKTNKVYDITERKSFCSNFCYQASKFFEAQIPKTPVWVREEE-RHPDFQLLKEEQSGHSGE 180          
BLAST of RTR1-type domain-containing protein vs. TrEMBL
Match: A0A1Y1MXG2 (RTR1-type domain-containing protein OS=Photinus pyralis OX=7054 GN=PPYR_08593 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.904e-17
Identity = 97/420 (23.10%), Postives = 176/420 (41.90%), Query Frame = 3
Query:   66 ENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGG-------------ELYFDEDLYTDENS-----ESDKIAK----KDYHETQQKCNPKKIIQNINPQQLVNKPNDMTENPKRQETMKNVI---NSLDKLA-INKKQTLEEVVNKIKTKAVNNQDRKLKIINEHLNDSDMILIPSDEESLFVLEKIKFLISSWITEETQDFICDSPNYDLDEDLDNQDGTDDKPINNEECELLPTLDSEDEMTIRRNILIRKAKMACVPILGDFNIEPNNFLKEFEKLIYTCRLTAKNIIFSNKEFKWLIIVFVDLLSSKLGKV 1247
            +N   ++  +K  + R   +L  L +  V  + F   +NFL     +++VEER   N CGY LCNN I       FS+D    K+Y+++NRKK+CSN+CY A  HI  QI   PLW    ++    ++L P T+ G  G             E+ FD      E S      +D+ AK    K  H   ++  P     +   + ++ +P   T    R  T+K  I    SLD    +  ++ + E   K+     +++    + +N+     +++     ++  F  E       S + ++++D      ++   E  D     D   +   E    P L       +R+ I +     A   ++    +E    L + E L+ T  L A +++F   E+  + ++ + +LS +  ++
Sbjct:   27 DNITATLLKKKECESRAMKLLEFLIEGKVRSEVFLRCINFLNRSYYQDVVEERSIMNLCGYCLCNNTIPKMTAKRFSIDSKNNKVYDITNRKKHCSNFCYKASLHIEKQIDDSPLWLRSFEVL-PTYTLLPVTDKGLPGDDVNSDTNILDKEEVQFDSSYSFAEASLHEMTNADEKAKQEDNKKAHTPTKEPPPHSQTSSDYARHVLKQPQPKTTKRNRSATLKKYILEWLSLDTYVFLFGRELVRERALKLNLPIPSSEVLTQRKLNQLCRKLELVDCRDKDKMTFHQELKPVPTYSQLKKDSKDISVKVRSFYSGETYDVSKSEDGDSLTMGES---PNL-------VRQEIFLTNINTAIKTLVEHLGVESAVTLTKIELLVRTFSLHAYSVVFQPVEWSLIALILIKMLSIRDAQI 435          
BLAST of RTR1-type domain-containing protein vs. TrEMBL
Match: A0A158P179 (RTR1-type domain-containing protein OS=Atta cephalotes OX=12957 GN=105626855 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.443e-16
Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   57 MANENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLW-KNKDKITNKVFSLYPSTETGCGGE 485
            M+ E   ++I  +K  D +   I++ L + +VD  +  + L F+    +E+++EER     CGYVLC+N + +     + +   K K+Y++S RK +CS+ CYGA   + +Q+   PLW + K+ I   VF + P   T   GE
Sbjct:    1 MSKEQMQLAIIKKKQCDAKALAIVMQLLESHVDSDWLLQNLGFISKNHMEDVIEERAIVKLCGYVLCSNQLTVIIRQQYHISTRKNKVYDVSKRKNFCSSLCYGAANFLLEQMLESPLWLREKEDIP--VFQILPVNSTSTCGE 142          
BLAST of RTR1-type domain-containing protein vs. TrEMBL
Match: A0A151IP99 (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Cyphomyrmex costatus OX=456900 GN=ALC62_01381 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.944e-15
Identity = 51/170 (30.00%), Postives = 92/170 (54.12%), Query Frame = 3
Query:   57 MANENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLW-KNKDKITNKVFSLYP-STETGCGGE-----LYFDEDLYTDENSESDKIAK 545
            M+ E   ++I  +K  D +   I++ L + +V+  +  + L F+    +E+++EER+    CGYVLC+N + +     + +   K K+Y++S R+ +CS+ CYGA   + +Q+   PLW + K+ I   VF + P +++  CG E     + F E+   D N +S K  K
Sbjct:   17 MSKEQMQLAIIKKKQCDAKALAIVMQLLEPHVNPDWLLQNLGFMSKNHMEDVIEERVIVKLCGYVLCSNQLTVVIRQQYHISTRKNKVYDVSKRRNFCSSLCYGATNFLLEQMLESPLWLREKEDIP--VFQILPLNSKPTCGEEIDVAGINFPENKNVDNNDDSKKSTK 184          
BLAST of RTR1-type domain-containing protein vs. TrEMBL
Match: A0A151WWM2 (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 (Fragment) OS=Trachymyrmex zeteki OX=64791 GN=ALC60_08772 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.277e-15
Identity = 44/146 (30.14%), Postives = 83/146 (56.85%), Query Frame = 3
Query:   57 MANENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLW-KNKDKITNKVFSLYP-STETGCGGEL 488
            M+ E   ++I  +K  D +   I++ L + +VD  +  + + F+    +E+++EER     CGYVLC+N + +     + +   K K+Y++S R+ +CS+ CYGA   + +Q+   PLW + K+ I   VF + P ++++ CG E+
Sbjct:   24 MSKEQMQLAIIKKKQCDAKALAIVMQLLESHVDSDWLLQNVRFISKSHMEDVIEERAIVKLCGYVLCSNQLTVIIRQQYHISTRKNKVYDVSKRRNFCSSLCYGAANFLLEQMLESPLWLREKEDIP--VFQILPLNSKSTCGEEI 167          
BLAST of RTR1-type domain-containing protein vs. TrEMBL
Match: A0A4V3SCP6 (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 OS=Temnothorax longispinosus OX=300112 GN=DBV15_09847 PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.771e-15
Identity = 45/146 (30.82%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   57 MANENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYP--STETGCGGEL 488
            M+     +++  +K  D +   I++ L + +VD  +  + L  +    +E+++EER     CGYVLC+N + +     + +  SK K+Y++S RK +CS+ CYGA  ++ +Q+   PLW  ++K    VF + P  S  T CG E+
Sbjct:   19 MSXAQLQLAVIKKKQCDAKALAIVVQLLEPHVDPDWLLQNLGLISKSHMEDVIEERAIVKLCGYVLCSNQLTVIIRQKYHISTSKNKVYDVSKRKNFCSSSCYGAANYLLEQMLESPLWM-REKEDIPVFQILPLSSKSTQCGDEI 163          
BLAST of RTR1-type domain-containing protein vs. Ensembl Nematostella
Match: EDO44305 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RWF1])

HSP 1 Score: 60.077 bits (144), Expect = 1.300e-9
Identity = 37/126 (29.37%), Postives = 64/126 (50.79%), Query Frame = 3
Query:   81 SIRNRKSHDVRFYNILIALS-DVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLC-NNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSL 452
            SI+ + + + R + I+  L  + +   ++F E  N++      ++V ER     CGY LC  +L NI P   F +     ++Y+++ RK +CSN CY A K    Q+   P+W  + +   K F+L
Sbjct:   42 SIKAQVAAEQRAHQIVEKLVLEEFATPEYFLEIGNYITHRHYSDVVTERFIIKICGYPLCPKSLTNI-PKQTFKISTRTNRVYDITERKCFCSNICYKASKFYESQLDESPIW-TRSRAGLKEFTL 165          
BLAST of RTR1-type domain-containing protein vs. Ensembl Medaka
Match: rpap2 (RNA polymerase II associated protein 2 [Source:NCBI gene;Acc:101160099])

HSP 1 Score: 67.0106 bits (162), Expect = 5.106e-12
Identity = 34/114 (29.82%), Postives = 55/114 (48.25%), Query Frame = 3
Query:   81 SIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNK 422
            ++R +   + R   ++  L +  V   F  E+  F+      + VEER     CGY  C   +   P+  F +     ++Y+++ RK++CSN+CY A K    QIP  PLW  K
Sbjct:   20 ALREQLELERRALEVVEQLLESSVAEDFLLESAKFITPANYRDAVEERSILKLCGYPTCPKQLGKIPSQQFKISTKTNRVYDITERKRFCSNFCYKASKEFELQIPKTPLWLRK 133          
BLAST of RTR1-type domain-containing protein vs. Planmine SMEST
Match: SMESG000077225.1 (SMESG000077225.1)

HSP 1 Score: 888.641 bits (2295), Expect = 0.000e+0
Identity = 437/446 (97.98%), Postives = 442/446 (99.10%), Query Frame = 3
Query:   57 MANENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGELYFDEDLYTDENSESDKIAKKDYHETQQKCNPKKIIQNINPQQLVNKPNDMTENPKRQETMKNVINSLDKLAINKKQTLEEVVNKIKTKAVNNQDRKLKIINEHLNDSDMILIPSDEESLFVLEKIKFLISSWITEETQDFICDSPNYDLDEDLDNQDGTDDKPINNEECELLPTLDSEDEMTIRRNILIRKAKMACVPILGDFNIEPNNFLKEFEKLIYTCRLTAKNIIFSNKEFKWLIIVFVDLLSSKLGKVDDDKKASVLKKHGITQSHLYEKVLEDIYSYIDQPVNISLSPQGDSIECK 1394
            MANENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIP EPLWKNKDKITNKVFSLYPSTE GCGGELYFDEDLYTDENSESDKIAK DYHETQQKCNPKKIIQNI+PQQL NKPNDMTENPKRQETMKNVINSLDKLAINKK+TLEEVVNKIKTKAVNNQ+RKLKIINEHLNDSDMILIPSDEESLFVLEKIKFLISSWITEETQDFICDSPNYDLDEDLDNQDGTDDKPINNEECELLPTLDSEDEMTIRRNILI+KAKMACVPILGDFNIEPNNFLKEFEKLIYTCRLTAKNIIFSNKEFKWLIIVFVDLLSSKLGKVDDD+KASVLKKHGITQSHLYEKVLEDIYSYIDQPVNISLSPQGDSIECK
Sbjct:    1 MANENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPWEPLWKNKDKITNKVFSLYPSTENGCGGELYFDEDLYTDENSESDKIAKNDYHETQQKCNPKKIIQNISPQQLANKPNDMTENPKRQETMKNVINSLDKLAINKKKTLEEVVNKIKTKAVNNQNRKLKIINEHLNDSDMILIPSDEESLFVLEKIKFLISSWITEETQDFICDSPNYDLDEDLDNQDGTDDKPINNEECELLPTLDSEDEMTIRRNILIKKAKMACVPILGDFNIEPNNFLKEFEKLIYTCRLTAKNIIFSNKEFKWLIIVFVDLLSSKLGKVDDDRKASVLKKHGITQSHLYEKVLEDIYSYIDQPVNISLSPQGDSIECK 446          
BLAST of RTR1-type domain-containing protein vs. Planmine SMEST
Match: SMESG000077222.1 (SMESG000077222.1)

HSP 1 Score: 368.237 bits (944), Expect = 1.250e-123
Identity = 215/437 (49.20%), Postives = 282/437 (64.53%), Query Frame = 3
Query:   57 MANENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELEEIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSNWCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGELYFDE--DLYTDENSESDKIAKKDYHETQQKCNPKKIIQNINPQQLVNKPNDMTENPKRQETMKNVINSLDKLAINKK--QTLEEVVNKIKTKAVNNQDRKLKIINEHLNDSDMILIPSDEESLFVLEKIKFLISSWITEETQDFICDSPNYDLDEDLDNQDGTDDKPINNEECELLPTLDSEDEMTIRRNILIRKAKMACVPILGDFNIEPNNFLKEFEKLIYTCRLTAKNIIFSNKEFKWLIIVFVDLLSSKLGKVDDDKKASVLKKHGITQSHLYEKVLEDIYSYIDQPVN 1355
            M  EN  +  R++K H++RF+  LI+LS+  V+WKFFRETL ++CV ELEEI EE+   NKCGYVLCNN I + P A++SL+ SK +I+ +S RKKYCS+WCYGA+KHI  Q+PSEPLWKNK+K  +K+F+LYP    GC GEL+ DE  D   DE + S+K    +Y       N  +  QN +P+  V K    T+ P R++T K  +N    +  N K  ++LEEV+NKI+    NN   K+  + +++N+  M LI SDE+ L  LEK+K  +  W+T  T  F  +S N D  E    Q+ TD++    EE   LPTLDS D+M IRRNILI KA  AC  I+ DF I  + FLKEFEK +  CRLTAKNI FSN E KWL+IV +DLL  K  KVD DKKA +LKKHG++Q  LYEKVLE+I S     +N
Sbjct:    1 MVWENNSLFTRDQKCHELRFFKFLISLSEEDVEWKFFRETLRYICVAELEEITEEKNCKNKCGYVLCNNSIIVPPNAIYSLNTSKNQIFKISKRKKYCSDWCYGAYKHISSQVPSEPLWKNKEKFIDKIFTLYPKCAVGCPGELHSDEEIDATEDEKTISNKEISTNYT------NVIRNYQNKSPEMNVLK----TQMPTRKQTTK--VNECINIQENPKKVKSLEEVLNKIRKNTTNNPKCKMINLEQNMNNCRMSLITSDEKILKHLEKVKSNVCDWMTWNTPKFPWNSSNCDFAE---YQENTDERC---EEIFKLPTLDSADQMEIRRNILISKALTACNLIIEDFLITTDIFLKEFEKFLCNCRLTAKNISFSNNEIKWLMIVIIDLLPPKFEKVDYDKKAFILKKHGLSQCQLYEKVLEEIKSCFYHSIN 419          
The following BLAST results are available for this feature:
BLAST of RTR1-type domain-containing protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RPAP26.186e-1327.41RNA polymerase II associated protein 2 [Source:HGN... [more]
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BLAST of RTR1-type domain-containing protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 2
Match NameE-valueIdentityDescription
rpap-25.386e-623.19Putative RNA polymerase II subunit B1 CTD phosphat... [more]
rpap-25.386e-623.19Putative RNA polymerase II subunit B1 CTD phosphat... [more]
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BLAST of RTR1-type domain-containing protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
CG341831.460e-1730.30gene:FBgn0085212 transcript:FBtr0112376[more]
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BLAST of RTR1-type domain-containing protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpap22.401e-934.07RNA polymerase II associated protein 2 [Source:NCB... [more]
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BLAST of RTR1-type domain-containing protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
RPAP24.500e-933.33RNA polymerase II associated protein 2 [Source:NCB... [more]
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BLAST of RTR1-type domain-containing protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Rpap22.778e-1230.00RNA polymerase II associated protein 2 [Source:MGI... [more]
Rpap23.207e-1230.00RNA polymerase II associated protein 2 [Source:MGI... [more]
Rpap23.287e-1230.00RNA polymerase II associated protein 2 [Source:MGI... [more]
Rpap21.489e-1133.77RNA polymerase II associated protein 2 [Source:MGI... [more]
Rpap22.848e-1130.39RNA polymerase II associated protein 2 [Source:MGI... [more]
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BLAST of RTR1-type domain-containing protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5
Match NameE-valueIdentityDescription
sp|A8DYY5|RPAP2_DROME1.463e-1630.30Putative RNA polymerase II subunit B1 CTD phosphat... [more]
sp|F6RRD7|RPAP2_BOVIN1.952e-1328.89Putative RNA polymerase II subunit B1 CTD phosphat... [more]
sp|Q5I0E6|RPAP2_RAT3.403e-1328.37RNA polymerase II subunit B1 CTD phosphatase Rpap2... [more]
sp|Q5RA37|RPAP2_PONAB2.721e-1227.41Putative RNA polymerase II subunit B1 CTD phosphat... [more]
sp|Q8IXW5|RPAP2_HUMAN2.971e-1227.41Putative RNA polymerase II subunit B1 CTD phosphat... [more]
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BLAST of RTR1-type domain-containing protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A1Y1MXG25.904e-1723.10RTR1-type domain-containing protein OS=Photinus py... [more]
A0A158P1796.443e-1631.94RTR1-type domain-containing protein OS=Atta cephal... [more]
A0A151IP991.944e-1530.00Putative RNA polymerase II subunit B1 CTD phosphat... [more]
A0A151WWM22.277e-1530.14Putative RNA polymerase II subunit B1 CTD phosphat... [more]
A0A4V3SCP62.771e-1530.82Putative RNA polymerase II subunit B1 CTD phosphat... [more]
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BLAST of RTR1-type domain-containing protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RTR1-type domain-containing protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RTR1-type domain-containing protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of RTR1-type domain-containing protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO443051.300e-929.37Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of RTR1-type domain-containing protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
rpap25.106e-1229.82RNA polymerase II associated protein 2 [Source:NCB... [more]
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BLAST of RTR1-type domain-containing protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2
Match NameE-valueIdentityDescription
SMESG000077225.10.000e+097.98SMESG000077225.1[more]
SMESG000077222.11.250e-12349.20SMESG000077222.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029114 ID=SMED30029114|Name=RTR1-type domain-containing protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1491bp
CGAAATATTTGTTTAAATAATAAAGCAATGGTATCTGAATATTCAAATAA
TTGATTATGGCCAACGAAAATTGCATAATATCTATTCGAAACAGGAAATC
ACATGATGTACGCTTTTATAATATTCTCATTGCACTTTCAGATGTTTATG
TAGATTGGAAATTTTTTCGAGAAACTCTCAATTTTCTATGTGTTCCTGAA
TTAGAGGAAATAGTTGAAGAAAGAATTAGCACAAATAAATGTGGTTATGT
TTTGTGTAATAATTTGATTAATATCCATCCTACTGCAATGTTTTCTCTAG
ATATCTCAAAAAGGAAAATTTATAATTTATCCAATAGAAAAAAATACTGC
AGTAATTGGTGTTATGGTGCCTTTAAGCATATTTGTGATCAGATTCCATC
GGAACCATTATGGAAAAATAAAGATAAAATTACTAATAAAGTATTTTCAC
TATATCCTTCAACTGAAACTGGCTGCGGAGGAGAACTCTATTTTGATGAA
GATTTATATACAGATGAAAATAGTGAAAGCGATAAAATTGCTAAAAAAGA
TTATCATGAAACCCAGCAAAAATGCAATCCAAAGAAAATAATACAAAATA
TTAACCCTCAACAGCTTGTAAATAAGCCAAACGATATGACAGAAAATCCT
AAACGACAGGAAACTATGAAGAATGTCATAAACTCTCTTGATAAATTAGC
AATTAATAAAAAGCAAACTTTAGAAGAAGTTGTAAATAAGATAAAAACTA
AAGCAGTAAATAATCAGGATAGAAAATTGAAAATCATTAATGAGCATTTG
AATGATAGTGATATGATTTTAATCCCTTCAGATGAAGAAAGCTTGTTTGT
CTTAGAGAAGATCAAATTTTTAATTTCTAGCTGGATTACTGAGGAAACTC
AGGATTTTATTTGTGACAGTCCAAATTACGATTTAGATGAAGATTTGGAC
AATCAAGATGGTACCGATGATAAACCAATAAATAACGAAGAATGTGAATT
GTTACCTACTCTTGATTCGGAGGATGAAATGACAATCAGGAGAAACATTT
TAATTAGAAAGGCAAAAATGGCGTGCGTACCGATTTTGGGAGATTTTAAC
ATTGAACCGAACAATTTTCTCAAGGAATTCGAAAAGTTAATTTACACGTG
TCGATTAACTGCAAAAAATATAATCTTTTCAAACAAAGAATTCAAATGGT
TGATAATTGTTTTCGTGGACTTATTGTCATCTAAATTGGGAAAGGTGGAC
GATGACAAAAAGGCTTCCGTATTAAAGAAGCATGGAATTACCCAATCCCA
TTTGTATGAGAAGGTGTTAGAGGATATTTACTCATACATCGACCAGCCTG
TCAATATATCTCTATCGCCACAAGGAGACAGCATTGAGTGTAAATAAAGT
TTACGTTTACAGAGTCTTAATAGTTGGTTTCGATTTTGTTTCTATTTATT
GTTATCAATTATTTAGTGTGTTGATTAATGCTTTGGGAGTG
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protein sequence of SMED30029114-orf-1

>SMED30029114-orf-1 ID=SMED30029114-orf-1|Name=SMED30029114-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=447bp
MANENCIISIRNRKSHDVRFYNILIALSDVYVDWKFFRETLNFLCVPELE
EIVEERISTNKCGYVLCNNLINIHPTAMFSLDISKRKIYNLSNRKKYCSN
WCYGAFKHICDQIPSEPLWKNKDKITNKVFSLYPSTETGCGGELYFDEDL
YTDENSESDKIAKKDYHETQQKCNPKKIIQNINPQQLVNKPNDMTENPKR
QETMKNVINSLDKLAINKKQTLEEVVNKIKTKAVNNQDRKLKIINEHLND
SDMILIPSDEESLFVLEKIKFLISSWITEETQDFICDSPNYDLDEDLDNQ
DGTDDKPINNEECELLPTLDSEDEMTIRRNILIRKAKMACVPILGDFNIE
PNNFLKEFEKLIYTCRLTAKNIIFSNKEFKWLIIVFVDLLSSKLGKVDDD
KKASVLKKHGITQSHLYEKVLEDIYSYIDQPVNISLSPQGDSIECK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: molecular function
TermDefinition
GO:0043175RNA polymerase core enzyme binding
GO:0003674molecular_function
GO:0004721phosphoprotein phosphatase activity
GO:0008420CTD phosphatase activity
GO:0016787hydrolase activity
GO:0046872metal ion binding
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002089reproductive organ
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR038534Rtr1/RPAP2_sf
IPR039693Rtr1/RPAP2
IPR007308Rtr1/RPAP2_dom
Vocabulary: cellular component
TermDefinition
GO:0005575cellular_component
GO:0005634nucleus
GO:0005730nucleolus
GO:0005737cytoplasm
GO:0005829cytosol
GO:0016591DNA-directed RNA polymerase II, holoenzyme
Vocabulary: biological process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006355regulation of transcription, DNA-templated
GO:0008150biological_process
GO:0009301snRNA transcription
GO:0070940dephosphorylation of RNA polymerase II C-terminal domain
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007308Rtr1/RPAP2 domainPFAMPF04181RPAP2_Rtr1coord: 46..113
e-value: 1.4E-13
score: 50.9
IPR007308Rtr1/RPAP2 domainPROSITEPS51479ZF_RTR1coord: 39..122
score: 15.194
IPR038534Rtr1/RPAP2 domain superfamilyGENE3DG3DSA:1.25.40.820coord: 9..165
e-value: 1.9E-17
score: 65.4
IPR039693Rtr1/RPAP2PANTHERPTHR14732UNCHARACTERIZEDcoord: 199..422
coord: 8..287