Elongin B

Overview
NameElongin B
Smed IDSMED30029051
Length (bp)489
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Elongin B (SMED30029051) t-SNE clustered cells

Violin plots show distribution of expression levels for Elongin B (SMED30029051) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Elongin B (SMED30029051) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Elongin B (SMED30029051) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30029051

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 18

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
nervous systemSMED30029051h1SMcG0008426 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30029051h1SMcG0008426 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30029051h1SMcG0008426 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30029051h1SMcG0008426 dd_Smed_v4_2054_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30029051h1SMcG0008426 dd_Smed_v4_2054_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30029051h1SMcG0008427 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30029051h1SMcG0008427 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30029051h1SMcG0008427 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30029051h1SMcG0008426 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30029051h1SMcG0008426 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30029051h1SMcG0008426 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30029051h1SMcG0008426 dd_Smed_v4_2054_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymal cellSMED30029051h1SMcG0008426 dd_Smed_v4_2054_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30029051h1SMcG0008427 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parapharyngeal regionSMED30029051h1SMcG0008427 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
parenchymaSMED30029051h1SMcG0008427 dd_Smed_v4_8958_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30029051h1SMcG0008426 dd_Smed_v4_2054_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
epidermisSMED30029051h1SMcG0008426 dd_Smed_v4_2054_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Elongin B vs. Ensembl Human
Match: ELOB (elongin B [Source:HGNC Symbol;Acc:HGNC:11619])

HSP 1 Score: 117.087 bits (292), Expect = 6.279e-34
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQS 375
            MDV+LM++R KT+IF D KE+STV E+K+++EGILK  P+ Q LYKD  +++D KT+ E    S T+R Q P+ +GL  R  +   FE L I P S PPELP+VM+ QD  
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD--TFEALCIEPFSSPPELPDVMKPQDSG 109
[Close]
BLAST of Elongin B vs. Ensembl Human
Match: ELOB (elongin B [Source:HGNC Symbol;Acc:HGNC:11619])

HSP 1 Score: 117.857 bits (294), Expect = 1.209e-33
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQD 369
            MDV+LM++R KT+IF D KE+STV E+K+++EGILK  P+ Q LYKD  +++D KT+ E    S T+R Q P+ +GL  R  +   FE L I P S PPELP+VM+ QD
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD--TFEALCIEPFSSPPELPDVMKPQD 107
[Close]
BLAST of Elongin B vs. Ensembl Human
Match: ELOB (elongin B [Source:HGNC Symbol;Acc:HGNC:11619])

HSP 1 Score: 108.227 bits (269), Expect = 1.964e-30
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:   58 MVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQD 369
            M++R KT+IF D KE+STV E+K+++EGILK  P+ Q LYKD  +++D KT+ E    S T+R Q P+ +GL  R  +   FE L I P S PPELP+VM+ QD
Sbjct:    1 MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD--TFEALCIEPFSSPPELPDVMKPQD 102
[Close]
BLAST of Elongin B vs. Ensembl Human
Match: ELOB (elongin B [Source:HGNC Symbol;Acc:HGNC:11619])

HSP 1 Score: 101.679 bits (252), Expect = 1.243e-27
Identity = 55/133 (41.35%), Postives = 75/133 (56.39%), Query Frame = 1 
Query:   46 DVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYK-----------------------DKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQS 375
            DV+LM++R KT+IF D KE+STV E+K+++EGILK  P+ Q LYK                       D  +++D KT+ E    S T+R Q P+ +GL  R  +   FE L I P S PPELP+VM+ QD  
Sbjct:    1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKLLVRSLWDLPHVGPLPRSCFSPQDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD--TFEALCIEPFSSPPELPDVMKPQDSG 131
[Close]
BLAST of Elongin B vs. Ensembl Human
Match: ELOB (elongin B [Source:HGNC Symbol;Acc:HGNC:11619])

HSP 1 Score: 64.6994 bits (156), Expect = 4.036e-14
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYK 180
            MDV+LM++R KT+IF D KE+STV E+K+++EGILK  P+ Q LYK
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK 46
[Close]
BLAST of Elongin B vs. Ensembl Celegans
Match: elb-1 (ELongin B; RNA polymerase II transcription factor SIII p18 subunit [Source:UniProtKB/TrEMBL;Acc:G5ECR7])

HSP 1 Score: 68.1662 bits (165), Expect = 2.487e-15
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 1 
Query:   46 DVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQM-LYK------DKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQSP 378
            +++  V+R ++ I+LD +E+ +VME+K M+ GI +  P N M L+K         ++ DT T+++   +S  ++AQ P+ LGL L + E    E L I  +S  P +P+ MR Q+Q+P
Sbjct:    5 ELFFEVRRNRSHIYLDAEESHSVMELKLMLAGITR-DPVNHMELWKLDEDGNKSQLLHDTATLSDAGFSSTNAKAQCPAALGLRLTNAE----EHLTISDVSTAPPIPDTMR-QEQAP 116
[Close]
BLAST of Elongin B vs. Ensembl Fly
Match: EloB (gene:FBgn0023212 transcript:FBtr0083947)

HSP 1 Score: 133.265 bits (334), Expect = 1.119e-40
Identity = 64/115 (55.65%), Postives = 88/115 (76.52%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLY-KDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQSPLQ 384
            MDV+LM++R+KT+IF D KEN+TV E+K+MIEGILKVQP +Q LY +D  VMED  T+ +Y +   T++AQ P+ LGL  R+ E+G+FETL++ P S PP+LPEVM+ Q+ S  Q
Sbjct:    1 MDVFLMIRRQKTTIFTDAKENTTVAELKRMIEGILKVQPVDQRLYNQDNDVMEDDSTLQDYGVTVSTAKAQAPAQLGLTFRN-EVGDFETLDMTPYSAPPDLPEVMKNQEASNGQ 114
[Close]
BLAST of Elongin B vs. Ensembl Zebrafish
Match: elob (elongin B [Source:ZFIN;Acc:ZDB-GENE-020415-1])

HSP 1 Score: 115.546 bits (288), Expect = 1.973e-33
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQS 375
            MDV+LM++R KT+IF D KE++TV E+K+++EGILK  PE+Q LYKD  ++ED+KT+ +    + T+R Q P+ +GL  R +    FE L I   S PPELP+VM+ QD  
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRAPEDQRLYKDDMLLEDSKTLGDCGFTNQTARPQAPATVGLAFR-ISDDAFEPLRIEAFSSPPELPDVMKPQDSG 110
[Close]
BLAST of Elongin B vs. Ensembl Zebrafish
Match: elob (elongin B [Source:ZFIN;Acc:ZDB-GENE-020415-1])

HSP 1 Score: 106.301 bits (264), Expect = 5.401e-30
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   58 MVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQD 369
            M++R KT+IF D KE++TV E+K+++EGILK  PE+Q LYKD  ++ED+KT+ +    + T+R Q P+ +GL  R +    FE L I   S PPELP+VM+ QD
Sbjct:    1 MIRRHKTTIFTDAKESTTVYELKRIVEGILKRAPEDQRLYKDDMLLEDSKTLGDCGFTNQTARPQAPATVGLAFR-ISDDAFEPLRIEAFSSPPELPDVMKPQD 103
[Close]
BLAST of Elongin B vs. Ensembl Zebrafish
Match: elob (elongin B [Source:ZFIN;Acc:ZDB-GENE-020415-1])

HSP 1 Score: 106.301 bits (264), Expect = 5.401e-30
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   58 MVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQD 369
            M++R KT+IF D KE++TV E+K+++EGILK  PE+Q LYKD  ++ED+KT+ +    + T+R Q P+ +GL  R +    FE L I   S PPELP+VM+ QD
Sbjct:    1 MIRRHKTTIFTDAKESTTVYELKRIVEGILKRAPEDQRLYKDDMLLEDSKTLGDCGFTNQTARPQAPATVGLAFR-ISDDAFEPLRIEAFSSPPELPDVMKPQD 103
[Close]
BLAST of Elongin B vs. Ensembl Zebrafish
Match: BX004999.2 (pep chromosome:GRCz11:3:31066787:31079186:-1 gene:ENSDARG00000097471.2 transcript:ENSDART00000145636.2 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BX004999.2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.093e-15
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDK 186
            MDV+LM++R KT+IF D KE++TV E+K+++EGILK  PE+Q LYK++
Sbjct:    8 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRAPEDQRLYKER 55
[Close]
BLAST of Elongin B vs. Ensembl Xenopus
Match: fam210a (family with sequence similarity 210 member A [Source:Xenbase;Acc:XB-GENE-944382])

HSP 1 Score: 115.931 bits (289), Expect = 1.779e-33
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQS 375
            MDV+LM++  KT+IF D KE++TV E+K+++EGILK  PE+Q LYKD  V++D KT+ +    S T+R Q P+ +GL  R     +FE L + P S PPELP+VM+ Q+ S
Sbjct:    1 MDVFLMIRHHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQKLYKDDQVLDDNKTLGDCGFTSQTARPQAPATVGLAFRS-SGDSFEPLRVDPFSSPPELPDVMKPQETS 110
[Close]
BLAST of Elongin B vs. Ensembl Mouse
Match: Elob (elongin B [Source:MGI Symbol;Acc:MGI:1914923])

HSP 1 Score: 120.553 bits (301), Expect = 2.180e-35
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQS 375
            MDV+LM++R KT+IF D KE+STV E+K+++EGILK  PE Q LYKD  +++D KT+ E    S T+R Q P+ +GL  R  +   FE L I P S PPELP+VM+ QD  
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD--TFEALRIEPFSSPPELPDVMKPQDSG 109
[Close]
BLAST of Elongin B vs. Ensembl Mouse
Match: Elob (elongin B [Source:MGI Symbol;Acc:MGI:1914923])

HSP 1 Score: 95.5153 bits (236), Expect = 6.122e-26
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLR 282
            MDV+LM++R KT+IF D KE+STV E+K+++EGILK  PE Q LYKD  +++D KT+ E    S T+R Q P+ +GL  R
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80
[Close]
BLAST of Elongin B vs. Ensembl Mouse
Match: Elobl (elongin B-like [Source:MGI Symbol;Acc:MGI:1860403])

HSP 1 Score: 91.6633 bits (226), Expect = 2.337e-24
Identity = 43/98 (43.88%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:   31 VAESMDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFP 324
             A+ MDV+LM++ KKT+I  D KE+STV+ +K++IEGI+K  PE Q+L+KD  ++++ KT+ E    S  +R + P+ +GL  R  ++  FE LEI P
Sbjct:    5 AAKGMDVFLMIRYKKTTILTDAKESSTVLALKRIIEGIMKRPPEEQLLFKDNQLLDEMKTLRECGFTSQVARPEAPATVGLAFRTGDV--FEGLEIHP 100
[Close]
BLAST of Elongin B vs. Ensembl Mouse
Match: Elobl (elongin B-like [Source:MGI Symbol;Acc:MGI:1860403])

HSP 1 Score: 89.3521 bits (220), Expect = 8.439e-23
Identity = 43/96 (44.79%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLS 330
            MDV+LM++ KKT+I  D KE+STV+ +K++IEGI+K  PE Q+L+KD  ++++ KT+ E    S  +R + P+ +GL  R  ++  FE LEI P S
Sbjct:    1 MDVFLMIRYKKTTILTDAKESSTVLALKRIIEGIMKRPPEEQLLFKDNQLLDEMKTLRECGFTSQVARPEAPATVGLAFRTGDV--FEGLEIHPYS 94
[Close]
BLAST of Elongin B vs. Ensembl Mouse
Match: Elobl (elongin B-like [Source:MGI Symbol;Acc:MGI:1860403])

HSP 1 Score: 89.3521 bits (220), Expect = 8.439e-23
Identity = 43/96 (44.79%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLS 330
            MDV+LM++ KKT+I  D KE+STV+ +K++IEGI+K  PE Q+L+KD  ++++ KT+ E    S  +R + P+ +GL  R  ++  FE LEI P S
Sbjct:    1 MDVFLMIRYKKTTILTDAKESSTVLALKRIIEGIMKRPPEEQLLFKDNQLLDEMKTLRECGFTSQVARPEAPATVGLAFRTGDV--FEGLEIHPYS 94
[Close]
BLAST of Elongin B vs. UniProt/SwissProt
Match: sp|P62870|ELOB_RAT (Elongin-B OS=Rattus norvegicus OX=10116 GN=Elob PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.525e-34
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQS 375
            MDV+LM++R KT+IF D KE+STV E+K+++EGILK  PE Q LYKD  +++D KT+ E    S T+R Q P+ +GL  R  +   FE L I P S PPELP+VM+ QD  
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD--TFEALRIEPFSSPPELPDVMKPQDSG 109
[Close]
BLAST of Elongin B vs. UniProt/SwissProt
Match: sp|P62869|ELOB_MOUSE (Elongin-B OS=Mus musculus OX=10090 GN=Elob PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.525e-34
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQS 375
            MDV+LM++R KT+IF D KE+STV E+K+++EGILK  PE Q LYKD  +++D KT+ E    S T+R Q P+ +GL  R  +   FE L I P S PPELP+VM+ QD  
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD--TFEALRIEPFSSPPELPDVMKPQDSG 109
[Close]
BLAST of Elongin B vs. UniProt/SwissProt
Match: sp|Q15370|ELOB_HUMAN (Elongin-B OS=Homo sapiens OX=9606 GN=ELOB PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.015e-33
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQS 375
            MDV+LM++R KT+IF D KE+STV E+K+++EGILK  P+ Q LYKD  +++D KT+ E    S T+R Q P+ +GL  R  +   FE L I P S PPELP+VM+ QD  
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD--TFEALCIEPFSSPPELPDVMKPQDSG 109
[Close]
BLAST of Elongin B vs. TrEMBL
Match: C1L5E2 (Elongin B OS=Schistosoma japonicum OX=6182 GN=Elongin-B PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.457e-44
Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQSPLQTGSE 396
            MDVY++V+RKKT+I L+ +E S V+E+KKMIEGI+KV+PE+QML K +T M+D KT++ YNLNS T+RA TP+ LGLCLRD     FETL+I P S PPELPEVMR+Q+  P Q+  E
Sbjct:    1 MDVYMVVRRKKTTIHLNARETSLVLEVKKMIEGIIKVKPEDQMLLKHQTEMDDEKTLSYYNLNSQTARAHTPATLGLCLRDPTTEKFETLDITPYSNPPELPEVMRSQENLPPQSAPE 118
[Close]
BLAST of Elongin B vs. TrEMBL
Match: A0A5K4EHA3 (Putative elongin B OS=Schistosoma mansoni OX=6183 PE=4 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.907e-43
Identity = 72/118 (61.02%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQSPLQTGSE 396
            M+VY++V+RKKT+I L  KE S V+E+KKMIEGILKV+PE+QML K +T M+D K+++ YNLNS T+RA TP+ LGLCLRD     FETL+I P S PPELPEVMR+Q+  P Q+  E
Sbjct:    1 MEVYMVVRRKKTTIHLSAKETSLVLEVKKMIEGILKVKPEDQMLLKHQTEMDDEKSLSYYNLNSQTARAHTPATLGLCLRDPATEKFETLDITPYSNPPELPEVMRSQENLPPQSAPE 118
[Close]
BLAST of Elongin B vs. TrEMBL
Match: B7PDP5 (RNA polymerase II transcription elongation factor, putative OS=Ixodes scapularis OX=6945 GN=8028374 PE=4 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.379e-41
Identity = 65/106 (61.32%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMR 360
            MDV+LMV+RKKT++FLD KE ++V E+KKMI GI KV PENQMLYKD+  M+D K + EY LNS T++AQ P+ +GL  RDL+ G FE L++ PLS PPELP+VM+
Sbjct:    1 MDVFLMVRRKKTTVFLDAKETTSVRELKKMIAGITKVAPENQMLYKDEQCMDDNKMLTEYGLNSSTAKAQAPATVGLAFRDLDSGKFENLDVTPLSSPPELPDVMK 106
[Close]
BLAST of Elongin B vs. TrEMBL
Match: A0A131ZA95 (Transcription elongation factor B, polypeptide 2 (Fragment) OS=Rhipicephalus appendiculatus OX=34631 PE=4 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.369e-41
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1 
Query:   34 AESMDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMR 360
            A++MDV+LMV+RKKT+IFLD KE ++V E+KKMI GI KV PENQ+LYKD   M+D K + EY LNS T++AQ P+ +GL  RD + G FE LE+ PLS PPELP+VM+
Sbjct:   45 ADTMDVFLMVRRKKTTIFLDAKETTSVRELKKMIAGITKVAPENQVLYKDDQCMDDNKVLTEYGLNSSTAKAQAPATVGLAFRDPDTGKFEPLEVTPLSSPPELPDVMK 153
[Close]
BLAST of Elongin B vs. TrEMBL
Match: A0A504YIH8 (Putative rna polymerase ii transcription elongation factor elongin/siii subunit elongin b OS=Fasciola gigantica OX=46835 GN=FGIG_06007 PE=4 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.985e-41
Identity = 70/112 (62.50%), Postives = 85/112 (75.89%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQSP 378
            M+VY++V+RKKT+I L+ KE +TV+E+KKMIEGILKV PENQM+ K  T +ED KT+  YNLN  T+RA TP+ LGLCLRD     FE L+I P SVPPELPEVMR  D  P
Sbjct:    1 MEVYMVVRRKKTTIHLNAKETTTVLEVKKMIEGILKVPPENQMILKHLTELEDDKTLGYYNLNGQTARAHTPASLGLCLRDPATEKFEALDITPYSVPPELPEVMRCPDNMP 112
[Close]
BLAST of Elongin B vs. Ensembl Cavefish
Match: ENSAMXT00000037441.1 (elongin B [Source:NCBI gene;Acc:103031344])

HSP 1 Score: 115.546 bits (288), Expect = 1.483e-33
Identity = 52/109 (47.71%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQD 369
            MDV+LM++R KT+IF D KE++TV E+K++++GILK  PE+Q LYKD+ ++ED+KT+ +    + T+R Q+P+ +GL  R +    FE L++   S PPELP+VM+ QD
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVQGILKRPPEDQRLYKDEQLLEDSKTLGDSGFTNQTARPQSPATVGLAFR-INDDTFEPLQVEAFSNPPELPDVMKPQD 108
[Close]
BLAST of Elongin B vs. Ensembl Cavefish
Match: elob (elongin B [Source:ZFIN;Acc:ZDB-GENE-020415-1])

HSP 1 Score: 107.071 bits (266), Expect = 2.209e-30
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   58 MVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQD 369
            M++R KT+IF D KE++TV E+K+++EGILK  PE Q LYKD  ++ED+KT+ +    + T+R Q P+ +GL  R +    FE L + P S PPELP+VM+ QD
Sbjct:    1 MIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEEQRLYKDDMLLEDSKTLGDCGFTNQTARPQAPATVGLAFR-VSDDAFEPLRVEPFSSPPELPDVMKPQD 103
[Close]
BLAST of Elongin B vs. Ensembl Cavefish
Match: ELOB (elongin B [Source:HGNC Symbol;Acc:HGNC:11619])

HSP 1 Score: 107.071 bits (266), Expect = 2.209e-30
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   58 MVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQD 369
            M++R KT+IF D KE++TV E+K+++EGILK  PE Q LYKD  ++ED+KT+ +    + T+R Q P+ +GL  R +    FE L + P S PPELP+VM+ QD
Sbjct:    1 MIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEEQRLYKDDMLLEDSKTLGDCGFTNQTARPQAPATVGLAFR-VSDDAFEPLRVEPFSSPPELPDVMKPQD 103
[Close]
BLAST of Elongin B vs. Ensembl Nematostella
Match: EDO37366 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SFY6])

HSP 1 Score: 116.316 bits (290), Expect = 1.972e-34
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQSPLQTGS 393
            M+V+LMV+R K SIFLDCKE +TVME+KK IEGI+K  PE+Q L+KD  +++D KT+ +    + T++AQTP+L+GL LR  +   FE + I  LS PPELP+VM+ Q+      GS
Sbjct:    1 MEVFLMVRRLKLSIFLDCKEGTTVMELKKKIEGIIKRPPEDQKLFKDDQLLDDNKTLGDCGFTNQTAKAQTPALVGLALRRED--EFEPVTIDALSSPPELPDVMKPQEGISNSDGS 115
[Close]
BLAST of Elongin B vs. Ensembl Medaka
Match: ELOB (elongin B [Source:NCBI gene;Acc:101169818])

HSP 1 Score: 112.849 bits (281), Expect = 1.464e-32
Identity = 53/109 (48.62%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQD 369
            MDV+LM++R KT+IF D KE++TV E+K+++EGILK  P++Q LYKD  ++ED KT+ +    + T+R Q P+ +GL  R  +   FE L I   S PPELP+VM+ QD
Sbjct:    1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRAPDDQRLYKDDQLLEDNKTLGDCGFTNQTARPQAPATVGLAFRSND-DMFEQLHIEAFSSPPELPDVMKPQD 108
[Close]
BLAST of Elongin B vs. Planmine SMEST
Match: SMESG000004072.1 (SMESG000004072.1)

HSP 1 Score: 243.817 bits (621), Expect = 2.518e-84
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:   43 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQSPLQTGSETK 402
            MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQSPLQTGSETK
Sbjct:    1 MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTVMEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPELPEVMRTQDQSPLQTGSETK 120
The following BLAST results are available for this feature:
BLAST of Elongin B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5
Match NameE-valueIdentityDescription
ELOB6.279e-3450.45elongin B [Source:HGNC Symbol;Acc:HGNC:11619][more]
ELOB1.209e-3351.38elongin B [Source:HGNC Symbol;Acc:HGNC:11619][more]
ELOB1.964e-3050.00elongin B [Source:HGNC Symbol;Acc:HGNC:11619][more]
ELOB1.243e-2741.35elongin B [Source:HGNC Symbol;Acc:HGNC:11619][more]
ELOB4.036e-1460.87elongin B [Source:HGNC Symbol;Acc:HGNC:11619][more]
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BLAST of Elongin B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 1
Match NameE-valueIdentityDescription
elb-12.487e-1534.75ELongin B; RNA polymerase II transcription factor ... [more]
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BLAST of Elongin B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
EloB1.119e-4055.65gene:FBgn0023212 transcript:FBtr0083947[more]
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BLAST of Elongin B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 4
Match NameE-valueIdentityDescription
elob1.973e-3348.65elongin B [Source:ZFIN;Acc:ZDB-GENE-020415-1][more]
elob5.401e-3048.08elongin B [Source:ZFIN;Acc:ZDB-GENE-020415-1][more]
elob5.401e-3048.08elongin B [Source:ZFIN;Acc:ZDB-GENE-020415-1][more]
BX004999.23.093e-1558.33pep chromosome:GRCz11:3:31066787:31079186:-1 gene:... [more]
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BLAST of Elongin B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 1
Match NameE-valueIdentityDescription
fam210a1.779e-3348.65family with sequence similarity 210 member A [Sour... [more]
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BLAST of Elongin B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5
Match NameE-valueIdentityDescription
Elob2.180e-3551.35elongin B [Source:MGI Symbol;Acc:MGI:1914923][more]
Elob6.122e-2652.50elongin B [Source:MGI Symbol;Acc:MGI:1914923][more]
Elobl2.337e-2443.88elongin B-like [Source:MGI Symbol;Acc:MGI:1860403][more]
Elobl8.439e-2344.79elongin B-like [Source:MGI Symbol;Acc:MGI:1860403][more]
Elobl8.439e-2344.79elongin B-like [Source:MGI Symbol;Acc:MGI:1860403][more]
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BLAST of Elongin B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 3
Match NameE-valueIdentityDescription
sp|P62870|ELOB_RAT1.525e-3451.35Elongin-B OS=Rattus norvegicus OX=10116 GN=Elob PE... [more]
sp|P62869|ELOB_MOUSE1.525e-3451.35Elongin-B OS=Mus musculus OX=10090 GN=Elob PE=1 SV... [more]
sp|Q15370|ELOB_HUMAN3.015e-3350.45Elongin-B OS=Homo sapiens OX=9606 GN=ELOB PE=1 SV=... [more]
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BLAST of Elongin B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
C1L5E28.457e-4461.02Elongin B OS=Schistosoma japonicum OX=6182 GN=Elon... [more]
A0A5K4EHA32.907e-4361.02Putative elongin B OS=Schistosoma mansoni OX=6183 ... [more]
B7PDP51.379e-4161.32RNA polymerase II transcription elongation factor,... [more]
A0A131ZA952.369e-4160.55Transcription elongation factor B, polypeptide 2 (... [more]
A0A504YIH82.985e-4162.50Putative rna polymerase ii transcription elongatio... [more]
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BLAST of Elongin B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSAMXT00000037441.11.483e-3347.71elongin B [Source:NCBI gene;Acc:103031344][more]
elob2.209e-3048.08elongin B [Source:ZFIN;Acc:ZDB-GENE-020415-1][more]
ELOB2.209e-3048.08elongin B [Source:HGNC Symbol;Acc:HGNC:11619][more]
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BLAST of Elongin B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Elongin B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Elongin B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 1
Match NameE-valueIdentityDescription
EDO373661.972e-3451.28Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7... [more]
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BLAST of Elongin B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1
Match NameE-valueIdentityDescription
ELOB1.464e-3248.62elongin B [Source:NCBI gene;Acc:101169818][more]
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BLAST of Elongin B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000004072.12.518e-84100.00SMESG000004072.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30029051 ID=SMED30029051|Name=Elongin B|organism=Schmidtea mediterranea sexual|type=transcript|length=489bp
TTATTACATTAAATATTTGATATTTTGATTGTTGCAGAATCCATGGATGT
CTATTTAATGGTCAAACGCAAAAAAACTTCCATATTTTTGGACTGTAAAG
AAAATAGCACTGTTATGGAAATTAAGAAAATGATTGAAGGAATATTAAAA
GTTCAACCTGAAAATCAAATGTTGTACAAAGACAAAACTGTGATGGAAGA
TACAAAAACAGTAGCTGAATATAATCTTAACAGTTTAACTTCTAGGGCAC
AAACACCTTCGTTATTAGGGTTATGTCTAAGAGATCTTGAAATTGGAAAC
TTTGAAACATTAGAAATTTTTCCTTTATCTGTACCTCCAGAGTTACCAGA
GGTGATGAGAACTCAAGATCAGTCTCCATTGCAAACAGGATCAGAAACTA
AATAACATTATGAATAATTAAAACTTATTTCATGTGCTTACTTTTTAAAA
TAAAATATTCAATTAATGGTTACAAATTTCAAAAAATCG
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protein sequence of SMED30029051-orf-1

>SMED30029051-orf-1 ID=SMED30029051-orf-1|Name=SMED30029051-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=121bp
MDVYLMVKRKKTSIFLDCKENSTVMEIKKMIEGILKVQPENQMLYKDKTV
MEDTKTVAEYNLNSLTSRAQTPSLLGLCLRDLEIGNFETLEIFPLSVPPE
LPEVMRTQDQSPLQTGSETK*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0006368transcription elongation from RNA polymerase II promoter
GO:0006414translational elongation
Vocabulary: cellular component
TermDefinition
GO:0030891VCB complex
GO:0070449elongin complex
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000034epidermis
PLANA:0000099neuron
Vocabulary: INTERPRO
TermDefinition
IPR039049ELOB
IPR000626Ubiquitin-like_dom
IPR029071Ubiquitin-like_domsf
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
GO:0003746translation elongation factor activity
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 3..73
e-value: 0.0047
score: 26.1
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 7..63
e-value: 1.9E-6
score: 27.5
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 1..64
score: 12.466
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 1..100
e-value: 2.7E-26
score: 93.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..120
NoneNo IPR availableCDDcd01788Ubl_ElonginBcoord: 2..104
e-value: 2.90226E-49
score: 150.524
IPR039049Elongin BPANTHERPTHR13248TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2coord: 1..113
IPR029071Ubiquitin-like domain superfamilySUPERFAMILYSSF54236Ubiquitin-likecoord: 1..106