SMED30028957

Overview
NameSMED30028957
Smed IDSMED30028957
Length (bp)1663
Neoblast Clusters

Zeng et. al., 2018




▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 



 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)




Explore this single cell expression dataset with our NB Cluster Shiny App




 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30028957 (SMED30028957) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30028957 (SMED30028957) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30028957 (SMED30028957) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30028957 (SMED30028957) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017




Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020




SMED30028957

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
gutSMED30028957SMESG000007358.1 dd_Smed_v4_7218_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018
FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30028957SMESG000007358.1 Contig39739newmark_estsPMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30028957SMESG000007358.1 Contig39739uc_Smed_v2PMID:29674431
Fincher et al., 2018
FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
reproductive organSMED30028957SMESG000042027.1 Contig4228GPL15192PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
reproductive organSMED30028957SMESG000007358.1 Contig4228GPL15192PMID:28434803
Rouhana et al., 2017
whole organism adult hermaphrodite RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30028957 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000038:267184..276799 -8177
Homology
BLAST of SMED30028957 vs. TrEMBL
Match: A0A5J4NDX7 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0008993 PE=4 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.230e-24
Identity = 88/331 (26.59%), Postives = 156/331 (47.13%), Query Frame = 3
Query:  153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYC----DYFLLPDKVDDWCKKLGC--QNDVCTYLFDDA--SVTNAVITTTP-----------------------KVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMT-VALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSL 1049
            LDKLP + EA  LP SE+ + A   ++Y  YC      F+   K+ DWC  L C  +N  C  L  +   ++TN  + +T                         V     HCYD + C     A  N+  +G SCF+  +  ++ N++ LP++ L   R+G  + L+++ + +++ +I T+ +    ++     +Q+  Y+++    IP  LP+    + +  W++  LL  R LY + G  +K++ S      ++   ++    ++  K FE T V  +P     V  T IG +  + NL+ +WLKVPL+ F P L    L+S++ T +
Sbjct:    7 LDKLPKVSEAFKLPYSEYRRHADGVLDYREYCLDGSSEFI--QKIHDWCLHLNCVEENGSCAPLTPNTFLTLTNQNLLSTDTLVPNTTNENTSYVNSSVFDFMRSVGYNGSHCYDDYLCDHERMAFANHCVLGYSCFLLCLSGIVSNLVLLPAYNLGRNRSGATVFLSAMAVLDLVYLILTLLLIVSRYMPDRFHEQMISYAQFSGRLIPIGLPIMQLCEFVVVWLVVALLANRLLYLKFGFQSKMLCSQLQAFKSVAVLVVFGLAYSGCKFFEYTSVHYEPVDVVRVVLTPIGRSSMYRNLVYHWLKVPLQMFLPYLSAGVLISVVVTKM 335          
BLAST of SMED30028957 vs. TrEMBL
Match: A0A4S2LSU4 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_006639 PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.021e-23
Identity = 83/304 (27.30%), Postives = 145/304 (47.70%), Query Frame = 3
Query:  147 ALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYC-DYFLLP-DKVDDWCKKLGCQN--DVCTYLFDDASVTNAVITTTPKVAALAK-------------HCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTV-ALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGP 1004
            A LD+LP ++EAL LP  ++ K AK  + Y  YC D F     KV +WC  L C      C  L    +V+  V T T ++ + A              +CYD + C     +  N+Y +G +CF   +  ++ N++ LP++ L   R+G  + LT++ + +++ +   + +    ++    ++Q+  Y+++ A  +P  LPL    + +  W++  LL  R +Y + G  AKL+ S      ++   I     F+  K  E  +     +    V FT +G    + NL+ +WLKVPL+ F P
Sbjct:    5 ARLDELPTVEEALKLPYDDYMKYAKGVLEYRDYCFDGFAEAITKVHEWCIHLNCSGVTRTCASLETTTTVSAFVTTATGELTSNASVFQLIESLRSNDSNCYDDYLCDHPGMSQANHYVLGFACFFLCLGGIVSNLVLLPAYNLGLNRSGATVYLTAMAVLDLLYLFLALVMVVSRYMTSDFQEQMVSYARFSARLVPVGLPLMQMCELVVVWLVVALLANRLMYLKFGCQAKLLCSQLQAFKSVAALIAFGVAFSGCKFLEYRLEEFNSTDVVRVIFTPVGGTSLYKNLMYHWLKVPLQMFLP 308          
BLAST of SMED30028957 vs. TrEMBL
Match: G4VD86 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_128170 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.110e-23
Identity = 80/321 (24.92%), Postives = 142/321 (44.24%), Query Frame = 3
Query:  153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPD--KVDDWCKKLGC--QNDVCTYLFDDA-----------------SVTNAVITTTPKVAALA------------KHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPS-GAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLG 1013
            +D+LP +D+        +   +   + Y  +C Y L     KV DWC  L C   +D C+ + D+                  +VT +V  + P  ++L+              CYD + C   +++  N+  +GV C    +  +I NI+  P++     R+G  + L+++ + + + +  ++ I+ I ++  S  +Q+ +Y ++    IPY LP+    + +  W+   LL  R LY   G H+K + S    +  +   I +   +   K FE T    P      V  T +G  E F +++ NWLKVPLE F P L 
Sbjct:    7 IDELPSVDDVFKNSYEVYRNYSLDVLKYKEFCQYGLAESIKKVHDWCIHLQCLSPSDPCSPMSDEEYQKRHVGLIIPVTSSYHNVTPSVEKSLPNSSSLSVFNYMQLIANNITGCYDDYICDKQYNSYPNHCILGVVCLTLCLCGIISNIVLFPAYNFGLNRSGATVYLSAMAIFDCVFMGLSLLINVIHYLPPSFIEQMEMYGQFSGYLIPYGLPVIQICELLVVWLTVALLTNRLLYLNLGPHSKSLCSQLESVKIVTAVIFLCIAYMGCKFFEYTYVEYPDKKVVRVLLTQLGKTEMFRDIMDNWLKVPLEMFLPYLA 327          
BLAST of SMED30028957 vs. TrEMBL
Match: A0A504YFJ7 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_10830 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.921e-22
Identity = 84/341 (24.63%), Postives = 151/341 (44.28%), Query Frame = 3
Query:  153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLP--DKVDDWCKKLGC-----------QNDVCTYL--FDDASVTNAVITTTPKVAAL------------------------AKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPS---GAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSL 1049
            LD+LP + EAL +P   + K A+  + +  YC   L    +KV +WC  L C            ND    L   + +++T    T + + A+                            CYD + C     +G N+  +G +CF+  +  ++ N++ LP++ +   R+G  I L+++ + +I  +  T+ +    ++      Q+  Y+++ A F+P   P+  F + +  W+   LL  R LY + G  +K + S    + +I    +VLFG     C  +   L  +     + V  T IG    + NL+ +WLKVPL+ F P L    L+S++ T +
Sbjct:    7 LDELPTVTEALKMPYQTYLKHARGVLEFKEYCQMGLTESLEKVHEWCVHLKCLSASDPCIPSRTNDTADELVFLESSAMTTPYPTDSIRNASFLDSNSSIFDKNHSVLNFMKVFGYNKSKCYDDYLCDQVEMSGPNHGILGFTCFILCLYGIVSNLVLLPAYNIGLNRSGATIYLSAMSIFDIAYMALTLLVVTSRYMPADFSSQMETYAQFSARFVPIGAPIMLFCELVVVWLTVALLANRLLYLKFGFQSKYLCSQLQSVKSITA--LVLFGLAYASCKMLEYTLIKNDHMNVFRVVLTPIGNTSLYKNLMYHWLKVPLQMFLPYLSVGLLVSLVVTKM 345          
BLAST of SMED30028957 vs. TrEMBL
Match: A0A4Z2DMT2 (FMRFamide receptor isoform X1 isoform 1 OS=Schistosoma japonicum OX=6182 GN=EWB00_010815 PE=4 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.422e-22
Identity = 81/329 (24.62%), Postives = 148/329 (44.98%), Query Frame = 3
Query:  153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPD--KVDDWCKKLGCQN--DVCTYLFDD----------ASVTNAVIT-TTP------------------KVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPS-GAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMM 1037
            +D+LP +++        +   +   + Y  +C Y L     KV DWC  L C +  D C  + D            S+T++ I  ++P                  ++      CYD + C   +++  N+  +GV CF   +  +I N++  P++     R+G  I L+++ L + I +  ++ I+ + ++  S  +Q+ +Y ++    IPY LP+    + +  W+   LL  R LY + G H+K + S    +  +    ++   +   K FE T    P      V FT +G  E F +++ NWLKVPLE F P L    L++++
Sbjct:    7 IDELPAVEDVYKHSYEVYQNYSLDVLKYKEFCQYGLAESIKKVQDWCIHLQCLSPLDPCVPMSDAEYKQKQIKLITSLTSSYINISSPVNQSIPNSSSISIFEYMQQIGNNTTGCYDDYICDKPYNSYPNHCILGVVCFTLCLCGIISNLVIFPAYNFGLNRSGATIYLSAMALFDCIFMGLSLLINVVHYLPSSFVEQMEMYGQFSGYLIPYGLPVFHICELLVVWLTIALLVNRLLYLKWGPHSKSLCSQVESVKIVTAIFLLCIAYMGGKFFEYTYVEYPEKKVVRVLFTQLGKMEMFRDIMDNWLKVPLEMFLPYLACGLLITII 335          
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000007358.1 (SMESG000007358.1)

HSP 1 Score: 951.429 bits (2458), Expect = 0.000e+0
Identity = 462/466 (99.14%), Postives = 465/466 (99.79%), Query Frame = 3
Query:  132 MDTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDDWCKKLGCQNDVCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSLGEQGISMNKLTEKKCANYKKLIKNLVIVNESEREDRILISVLLMSTIAIIIKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKPFIYIYISPNYCRSIHRYLLASCPGSQDGSVGMSMTFEQTIANKMRESISYRNSIWAQNPNDSSQSDKC 1529
            MDTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDDWCKKLGCQN VCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGV+CFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSLGEQGISMNKLTEKKCANYKKLIKNLVIVNESEREDRILISVLLMST+AI+IKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKPFIYIYISPNYCRSIHRYLLASCPGSQDGSVGMSMTFEQTIANKMRESISYRNSIWAQNPNDSSQSDKC
Sbjct:    1 MDTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDDWCKKLGCQNGVCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVACFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSLGEQGISMNKLTEKKCANYKKLIKNLVIVNESEREDRILISVLLMSTMAIVIKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKPFIYIYISPNYCRSIHRYLLASCPGSQDGSVGMSMTFEQTIANKMRESISYRNSIWAQNPNDSSQSDKC 466          
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000019555.1 (SMESG000019555.1)

HSP 1 Score: 168.318 bits (425), Expect = 5.424e-46
Identity = 123/419 (29.36%), Postives = 211/419 (50.36%), Query Frame = 3
Query:  153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDDWCKKLGCQNDVC-TYLFDDA-----------SVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTL-YGQRNGTDILLTSLVLCNIILIIFT-IYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKP--SGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSLGEQGISMNKLTEKKCANYKKLIKNLVIVNESE-REDRILISVLLMSTIAIIIKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKP-FIYIYISPNY 1355
            LD L  ++EAL L KS+F KI K F+ +S+YC   L+P+K+ DWC  L C    C   +  +A           ++ N  IT  P + +    C+D++FC+P W++   +Y +GV   +  + + I +++YL  F   +G++N   +LL +  +C+I  ++FT I +  +     +   QL +YS +   F+ Y+ P    F+++  WIL LL+F+R+ Y  HG H+K + + K   V +    I L  F+++K F   +   P  +  Y + ++ IG +ENF NLI  WLK+P+E   PL      + M+           +KL       +   + + +  +E + +E R+  S+L +  I ++ K+PK   HIL   E  +  D      L     D I+ F+K  F+Y Y+ P +
Sbjct:    3 LDDLIPINEALLLDKSKFYKIIKEFMPHSSYCGSMLIPEKMTDWCSYLQCDGITCKNEIISEALSKPILPSIVQNLCNQNITRDP-ILSYNGSCFDVYFCAPVWASKDYHYVLGVFGMLLAIFSFIFSMVYLTGFHREFGKKNTRTLLLITHTICDIFYLLFTMIGLLSMYSFYSNFTDQLKIYSSFHIYFVSYLQPFTDLFESLSFWILILLIFDRFNYLHHGTHSKNLLTNKVCSVLVGSVSISLVAFSILKLFTYELEKLPISTENYRLKYSKIGKSENFQNLIRFWLKMPMESLLPLTTVFIFIVMV----------CHKLI------FASSLNSKLNSSEIDFQEFRLTKSILFICCILLLAKVPKMALHIL-KFEIGIELDMEIKFHLFVEFFDQIYYFIKSCFLYRYMCPKF 403          
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000036502.1 (SMESG000036502.1)

HSP 1 Score: 130.954 bits (328), Expect = 3.028e-32
Identity = 116/477 (24.32%), Postives = 205/477 (42.98%), Query Frame = 3
Query:  135 DTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYC--DYFLLPDKVDDWCKKLGCQNDVCTYLFDDASVTNAVITTTPK-------------------------------VAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPS-GAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLG--------FIALLSMMYTSLGEQGISMNKLT--------------------EKKCANYKKLI--KNLVIV------NESEREDRILISVLLMSTIAIIIKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKPFIYIYISPNY 1355
            +  ++ LD LP  ++AL   K  + K A     +   C   +  + +K+ +WC  L C            S+ N  I   P+                               V      CYD ++C+    A   +Y +G++C +  ++ ++   ++LP F +   R G  + LT++ + + I +I    I  I ++   +  QL +YS++ A  IP+ LP     + +  WI   +L +R+LY + G H+K+I S K     I   +I+L  +T+ K  E  V   P  G   V +T++G NE+F N++ +WLKVP+E F P L          I    +MY     +  S NK                      EK  A +  L    N+  V      +  ++E+ +++  L++  + I +K+PKFI H L +E+  V      +       LD  ++F+KP I+I ++ ++
Sbjct:    3 EDSSSSLDLLPTYEDALKSSKEAYYKAANGVFEHRTTCLSSFAEVYEKLYEWCVALNCV----------GSLENCKIPPYPETGVISTSISLISTISIQPHPLVTSSYSQLMNVVGYNGTCYDDYYCNQRSVAPYLHYILGITCLIMCLIGILTTSLFLPVFNVASHRTGVTLYLTAIAIIDCIYMILFTVIVVIQYIPYEYTSQLDMYSRFTAHLIPHGLPTLQLMELLSVWITVAVLIDRFLYLKFGFHSKIICSRKASAKIIASILILLLIYTIPKFLEYHVINYPKLGVLRVMYTEVGFNESFQNMLLHWLKVPIEMFLPYLADAIFSVINSIKFYDLMYKRKLSEA-SKNKRRNAELNATDENDVKSMMFPEFEKDTAKFPSLTVDSNMPKVITSSLKDAEDKENSMVVMSLILGFLLIALKIPKFILHALKSEQY-VDLKSTKFFQPVNDFLDLSWVFLKPIIFICVAKHF 467          
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000026416.1 (SMESG000026416.1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.587e-9
Identity = 39/165 (23.64%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  303 QNDVCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHE-QQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAK 794
            +N +  YL D+  ++N + + T  ++ +   CYD ++C+    A + +   GV   +  +  LI+NI+ +P  +L G R+     + ++ + +  L+I  + +  I ++  + +  QL +Y  +VA  +P+  P +S  Q +       L+++RY Y +  K  K
Sbjct:   13 ENSIKHYLADN--LSNPISSETSSLSKIVS-CYDDYYCNNYELAHLGHVLFGVFGLILTLAGLILNILLIPVMSLVGIRSSATYYMIAMAISDSCLLIINLILVVIRYLPGAEQMDQLLMYQNFVAFLVPFGSPAKSVCQILSLCFCTALIWDRYSYLRIEKKPK 174          
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000026416.1 (SMESG000026416.1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.613e-9
Identity = 39/165 (23.64%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  303 QNDVCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHE-QQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAK 794
            +N +  YL D+  ++N + + T  ++ +   CYD ++C+    A + +   GV   +  +  LI+NI+ +P  +L G R+     + ++ + +  L+I  + +  I ++  + +  QL +Y  +VA  +P+  P +S  Q +       L+++RY Y +  K  K
Sbjct:    4 ENSIKHYLADN--LSNPISSETSSLSKIVS-CYDDYYCNNYELAHLGHVLFGVFGLILTLAGLILNILLIPVMSLVGIRSSATYYMIAMAISDSCLLIINLILVVIRYLPGAEQMDQLLMYQNFVAFLVPFGSPAKSVCQILSLCFCTALIWDRYSYLRIEKKPK 165          
The following BLAST results are available for this feature:
BLAST of SMED30028957 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A5J4NDX72.230e-2426.59Uncharacterized protein OS=Paragonimus westermani ... [more]
A0A4S2LSU41.021e-2327.30Uncharacterized protein OS=Opisthorchis felineus O... [more]
G4VD861.110e-2324.92Uncharacterized protein OS=Schistosoma mansoni OX=... [more]
A0A504YFJ72.921e-2224.63Uncharacterized protein OS=Fasciola gigantica OX=4... [more]
A0A4Z2DMT24.422e-2224.62FMRFamide receptor isoform X1 isoform 1 OS=Schisto... [more]
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BLAST of SMED30028957 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028957 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000007358.10.000e+099.14SMESG000007358.1[more]
SMESG000019555.15.424e-4629.36SMESG000019555.1[more]
SMESG000036502.13.028e-3224.32SMESG000036502.1[more]
SMESG000026416.11.587e-923.64SMESG000026416.1[more]
SMESG000026416.11.613e-923.64SMESG000026416.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028957 ID=SMED30028957|Name=SMED30028957|organism=Schmidtea mediterranea sexual|type=transcript|length=1663bp
TTAAAACATTAATAAATAAATTGGTTTTAAAACGCAATTTTGAAGGTCAA
GTGTGTTTTATAATTGTTAGCTATTAATTTTGTTTCTAATTATTCAACAA
TAATTTTCAAAAAAAATGAACAATTAACAAAATGGACACTGATACAGCAT
TACTTGACAAATTACCGTTCCTTGATGAGGCTTTATCACTACCTAAATCT
GAATTTAACAAAATAGCAAAAGCGTTTATTAATTACTCCGCTTATTGTGA
TTATTTTCTTTTACCGGATAAAGTTGATGATTGGTGTAAAAAATTAGGAT
GCCAAAATGATGTTTGTACATATTTATTTGATGATGCCTCTGTTACAAAT
GCAGTAATTACTACAACTCCGAAGGTTGCAGCTCTTGCAAAACATTGTTA
TGATATTTTCTTCTGTTCTCCATCATGGTCAGCAGGAATCAACTATTATT
CCATCGGTGTTTCTTGTTTCGTTTTTCTTGTTGTTGCATTGATTATGAAT
ATTATTTATTTGCCATCCTTTACATTATATGGTCAACGCAACGGAACCGA
TATATTGCTAACAAGTTTGGTTCTGTGCAATATTATCTTAATAATTTTTA
CAATTTATATTGACTGTATTCCATTTGTTCAAAAGTCTCATGAACAGCAG
TTGTATTTATATTCAAAATACGTAGCACTTTTTATCCCTTATATTTTACC
TTTGCAAAGCTTTTTCCAAACTATGGATTCTTGGATTTTATGCCTTCTTT
TATTCGAAAGATATTTATATCAACAGCATGGAAAACATGCGAAACTAATA
TTTTCCACAAAGACTATTATTGTCACGATTCTCTGCTTCATTATTGTTCT
TTTTGGATTTACCGTTGTAAAGTGTTTCGAAATGACAGTGGCATTGAAAC
CCAGTGGGGCTTATTCGGTGCATTTCACTGACATAGGCATGAATGAAAAT
TTCCATAATTTAATCACTAATTGGTTGAAAGTGCCTCTGGAGTATTTCGG
TCCGTTATTGGGATTTATTGCGTTATTGAGCATGATGTACACGAGTCTTG
GTGAGCAAGGAATCTCGATGAATAAATTGACAGAAAAAAAATGTGCGAAT
TATAAAAAATTAATTAAAAATCTTGTCATTGTAAACGAAAGTGAACGAGA
GGATAGAATACTGATCAGTGTTCTCTTGATGTCAACAATTGCTATAATTA
TCAAGCTGCCAAAATTCATTCATCACATTTTGGTAAATGAGGAAGCCAAT
GTTTCATTTGATAGACTGCATTATATTATGTTGAGTTATATCGTTCTTGA
CGCAATTTTTATATTTATGAAGCCATTTATATATATCTATATCTCGCCGA
ATTACTGTCGCAGCATCCATCGTTATTTACTTGCATCTTGTCCGGGTAGC
CAAGACGGTTCAGTTGGTATGTCAATGACATTTGAGCAAACAATTGCCAA
CAAAATGCGAGAATCTATTTCCTATCGGAACTCAATTTGGGCCCAAAATC
CGAATGATTCGAGCCAATCCGATAAATGTTGATTAATGAACGACTTTTAT
AATTCGAAAAATAATCATTTTCAATTGTCATTGTATGGAATTATGTATTT
GTAATGACTTGCATTGTTGTCCACCATTTATTTTAAAGCACTTAATTGAA
TTAAAGAAAATCA
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protein sequence of SMED30028957-orf-1

>SMED30028957-orf-1 ID=SMED30028957-orf-1|Name=SMED30028957-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=467bp
MDTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDD
WCKKLGCQNDVCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWS
AGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCN
IILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDS
WILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFE
MTVALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLS
MMYTSLGEQGISMNKLTEKKCANYKKLIKNLVIVNESEREDRILISVLLM
STIAIIIKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKPFI
YIYISPNYCRSIHRYLLASCPGSQDGSVGMSMTFEQTIANKMRESISYRN
SIWAQNPNDSSQSDKC*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000026gut
PLANA:0002089reproductive organ
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: cellular component
TermDefinition
GO:0016021integral component of membrane
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.20.1070.10coord: 96..428
e-value: 6.3E-19
score: 70.0
NoneNo IPR availableCDDcd149787tmA_FMRFamide_R-likecoord: 106..383
e-value: 2.86151E-8
score: 53.0204
NoneNo IPR availableSUPERFAMILYSSF81321Family A G protein-coupled receptor-likecoord: 92..430
NoneNo IPR availableTMHMMTMhelixcoord: 222..244
NoneNo IPR availableTMHMMTMhelixcoord: 345..367
NoneNo IPR availableTMHMMTMhelixcoord: 180..202
NoneNo IPR availableTMHMMTMhelixcoord: 141..160
NoneNo IPR availableTMHMMTMhelixcoord: 104..126
NoneNo IPR availableTMHMMTMhelixcoord: 382..404
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 122..401
score: 10.161