SMED30028957
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30028957 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 5
Alignments
SMED30028957 aligns in the following genomic locations:
Homology
BLAST of SMED30028957 vs. TrEMBL
Match: A0A5J4NDX7 (Uncharacterized protein OS=Paragonimus westermani OX=34504 GN=DEA37_0008993 PE=4 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.230e-24 Identity = 88/331 (26.59%), Postives = 156/331 (47.13%), Query Frame = 3 Query: 153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYC----DYFLLPDKVDDWCKKLGC--QNDVCTYLFDDA--SVTNAVITTTP-----------------------KVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMT-VALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSL 1049 LDKLP + EA LP SE+ + A ++Y YC F+ K+ DWC L C +N C L + ++TN + +T V HCYD + C A N+ +G SCF+ + ++ N++ LP++ L R+G + L+++ + +++ +I T+ + ++ +Q+ Y+++ IP LP+ + + W++ LL R LY + G +K++ S ++ ++ ++ K FE T V +P V T IG + + NL+ +WLKVPL+ F P L L+S++ T + Sbjct: 7 LDKLPKVSEAFKLPYSEYRRHADGVLDYREYCLDGSSEFI--QKIHDWCLHLNCVEENGSCAPLTPNTFLTLTNQNLLSTDTLVPNTTNENTSYVNSSVFDFMRSVGYNGSHCYDDYLCDHERMAFANHCVLGYSCFLLCLSGIVSNLVLLPAYNLGRNRSGATVFLSAMAVLDLVYLILTLLLIVSRYMPDRFHEQMISYAQFSGRLIPIGLPIMQLCEFVVVWLVVALLANRLLYLKFGFQSKMLCSQLQAFKSVAVLVVFGLAYSGCKFFEYTSVHYEPVDVVRVVLTPIGRSSMYRNLVYHWLKVPLQMFLPYLSAGVLISVVVTKM 335
BLAST of SMED30028957 vs. TrEMBL
Match: A0A4S2LSU4 (Uncharacterized protein OS=Opisthorchis felineus OX=147828 GN=CRM22_006639 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.021e-23 Identity = 83/304 (27.30%), Postives = 145/304 (47.70%), Query Frame = 3 Query: 147 ALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYC-DYFLLP-DKVDDWCKKLGCQN--DVCTYLFDDASVTNAVITTTPKVAALAK-------------HCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTV-ALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGP 1004 A LD+LP ++EAL LP ++ K AK + Y YC D F KV +WC L C C L +V+ V T T ++ + A +CYD + C + N+Y +G +CF + ++ N++ LP++ L R+G + LT++ + +++ + + + ++ ++Q+ Y+++ A +P LPL + + W++ LL R +Y + G AKL+ S ++ I F+ K E + + V FT +G + NL+ +WLKVPL+ F P Sbjct: 5 ARLDELPTVEEALKLPYDDYMKYAKGVLEYRDYCFDGFAEAITKVHEWCIHLNCSGVTRTCASLETTTTVSAFVTTATGELTSNASVFQLIESLRSNDSNCYDDYLCDHPGMSQANHYVLGFACFFLCLGGIVSNLVLLPAYNLGLNRSGATVYLTAMAVLDLLYLFLALVMVVSRYMTSDFQEQMVSYARFSARLVPVGLPLMQMCELVVVWLVVALLANRLMYLKFGCQAKLLCSQLQAFKSVAALIAFGVAFSGCKFLEYRLEEFNSTDVVRVIFTPVGGTSLYKNLMYHWLKVPLQMFLP 308
BLAST of SMED30028957 vs. TrEMBL
Match: G4VD86 (Uncharacterized protein OS=Schistosoma mansoni OX=6183 GN=Smp_128170 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.110e-23 Identity = 80/321 (24.92%), Postives = 142/321 (44.24%), Query Frame = 3 Query: 153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPD--KVDDWCKKLGC--QNDVCTYLFDDA-----------------SVTNAVITTTPKVAALA------------KHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPS-GAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLG 1013 +D+LP +D+ + + + Y +C Y L KV DWC L C +D C+ + D+ +VT +V + P ++L+ CYD + C +++ N+ +GV C + +I NI+ P++ R+G + L+++ + + + + ++ I+ I ++ S +Q+ +Y ++ IPY LP+ + + W+ LL R LY G H+K + S + + I + + K FE T P V T +G E F +++ NWLKVPLE F P L Sbjct: 7 IDELPSVDDVFKNSYEVYRNYSLDVLKYKEFCQYGLAESIKKVHDWCIHLQCLSPSDPCSPMSDEEYQKRHVGLIIPVTSSYHNVTPSVEKSLPNSSSLSVFNYMQLIANNITGCYDDYICDKQYNSYPNHCILGVVCLTLCLCGIISNIVLFPAYNFGLNRSGATVYLSAMAIFDCVFMGLSLLINVIHYLPPSFIEQMEMYGQFSGYLIPYGLPVIQICELLVVWLTVALLTNRLLYLNLGPHSKSLCSQLESVKIVTAVIFLCIAYMGCKFFEYTYVEYPDKKVVRVLLTQLGKTEMFRDIMDNWLKVPLEMFLPYLA 327
BLAST of SMED30028957 vs. TrEMBL
Match: A0A504YFJ7 (Uncharacterized protein OS=Fasciola gigantica OX=46835 GN=FGIG_10830 PE=4 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.921e-22 Identity = 84/341 (24.63%), Postives = 151/341 (44.28%), Query Frame = 3 Query: 153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLP--DKVDDWCKKLGC-----------QNDVCTYL--FDDASVTNAVITTTPKVAAL------------------------AKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPS---GAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSL 1049 LD+LP + EAL +P + K A+ + + YC L +KV +WC L C ND L + +++T T + + A+ CYD + C +G N+ +G +CF+ + ++ N++ LP++ + R+G I L+++ + +I + T+ + ++ Q+ Y+++ A F+P P+ F + + W+ LL R LY + G +K + S + +I +VLFG C + L + + V T IG + NL+ +WLKVPL+ F P L L+S++ T + Sbjct: 7 LDELPTVTEALKMPYQTYLKHARGVLEFKEYCQMGLTESLEKVHEWCVHLKCLSASDPCIPSRTNDTADELVFLESSAMTTPYPTDSIRNASFLDSNSSIFDKNHSVLNFMKVFGYNKSKCYDDYLCDQVEMSGPNHGILGFTCFILCLYGIVSNLVLLPAYNIGLNRSGATIYLSAMSIFDIAYMALTLLVVTSRYMPADFSSQMETYAQFSARFVPIGAPIMLFCELVVVWLTVALLANRLLYLKFGFQSKYLCSQLQSVKSITA--LVLFGLAYASCKMLEYTLIKNDHMNVFRVVLTPIGNTSLYKNLMYHWLKVPLQMFLPYLSVGLLVSLVVTKM 345
BLAST of SMED30028957 vs. TrEMBL
Match: A0A4Z2DMT2 (FMRFamide receptor isoform X1 isoform 1 OS=Schistosoma japonicum OX=6182 GN=EWB00_010815 PE=4 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.422e-22 Identity = 81/329 (24.62%), Postives = 148/329 (44.98%), Query Frame = 3 Query: 153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPD--KVDDWCKKLGCQN--DVCTYLFDD----------ASVTNAVIT-TTP------------------KVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPS-GAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMM 1037 +D+LP +++ + + + Y +C Y L KV DWC L C + D C + D S+T++ I ++P ++ CYD + C +++ N+ +GV CF + +I N++ P++ R+G I L+++ L + I + ++ I+ + ++ S +Q+ +Y ++ IPY LP+ + + W+ LL R LY + G H+K + S + + ++ + K FE T P V FT +G E F +++ NWLKVPLE F P L L++++ Sbjct: 7 IDELPAVEDVYKHSYEVYQNYSLDVLKYKEFCQYGLAESIKKVQDWCIHLQCLSPLDPCVPMSDAEYKQKQIKLITSLTSSYINISSPVNQSIPNSSSISIFEYMQQIGNNTTGCYDDYICDKPYNSYPNHCILGVVCFTLCLCGIISNLVIFPAYNFGLNRSGATIYLSAMALFDCIFMGLSLLINVVHYLPSSFVEQMEMYGQFSGYLIPYGLPVFHICELLVVWLTIALLVNRLLYLKWGPHSKSLCSQVESVKIVTAIFLLCIAYMGGKFFEYTYVEYPEKKVVRVLFTQLGKMEMFRDIMDNWLKVPLEMFLPYLACGLLITII 335
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000007358.1 (SMESG000007358.1) HSP 1 Score: 951.429 bits (2458), Expect = 0.000e+0 Identity = 462/466 (99.14%), Postives = 465/466 (99.79%), Query Frame = 3 Query: 132 MDTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDDWCKKLGCQNDVCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSLGEQGISMNKLTEKKCANYKKLIKNLVIVNESEREDRILISVLLMSTIAIIIKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKPFIYIYISPNYCRSIHRYLLASCPGSQDGSVGMSMTFEQTIANKMRESISYRNSIWAQNPNDSSQSDKC 1529 MDTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDDWCKKLGCQN VCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGV+CFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSLGEQGISMNKLTEKKCANYKKLIKNLVIVNESEREDRILISVLLMST+AI+IKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKPFIYIYISPNYCRSIHRYLLASCPGSQDGSVGMSMTFEQTIANKMRESISYRNSIWAQNPNDSSQSDKC Sbjct: 1 MDTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDDWCKKLGCQNGVCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVACFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPSGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSLGEQGISMNKLTEKKCANYKKLIKNLVIVNESEREDRILISVLLMSTMAIVIKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKPFIYIYISPNYCRSIHRYLLASCPGSQDGSVGMSMTFEQTIANKMRESISYRNSIWAQNPNDSSQSDKC 466
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000019555.1 (SMESG000019555.1) HSP 1 Score: 168.318 bits (425), Expect = 5.424e-46 Identity = 123/419 (29.36%), Postives = 211/419 (50.36%), Query Frame = 3 Query: 153 LDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDDWCKKLGCQNDVC-TYLFDDA-----------SVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTL-YGQRNGTDILLTSLVLCNIILIIFT-IYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKP--SGAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLGFIALLSMMYTSLGEQGISMNKLTEKKCANYKKLIKNLVIVNESE-REDRILISVLLMSTIAIIIKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKP-FIYIYISPNY 1355 LD L ++EAL L KS+F KI K F+ +S+YC L+P+K+ DWC L C C + +A ++ N IT P + + C+D++FC+P W++ +Y +GV + + + I +++YL F +G++N +LL + +C+I ++FT I + + + QL +YS + F+ Y+ P F+++ WIL LL+F+R+ Y HG H+K + + K V + I L F+++K F + P + Y + ++ IG +ENF NLI WLK+P+E PL + M+ +KL + + + + +E + +E R+ S+L + I ++ K+PK HIL E + D L D I+ F+K F+Y Y+ P + Sbjct: 3 LDDLIPINEALLLDKSKFYKIIKEFMPHSSYCGSMLIPEKMTDWCSYLQCDGITCKNEIISEALSKPILPSIVQNLCNQNITRDP-ILSYNGSCFDVYFCAPVWASKDYHYVLGVFGMLLAIFSFIFSMVYLTGFHREFGKKNTRTLLLITHTICDIFYLLFTMIGLLSMYSFYSNFTDQLKIYSSFHIYFVSYLQPFTDLFESLSFWILILLIFDRFNYLHHGTHSKNLLTNKVCSVLVGSVSISLVAFSILKLFTYELEKLPISTENYRLKYSKIGKSENFQNLIRFWLKMPMESLLPLTTVFIFIVMV----------CHKLI------FASSLNSKLNSSEIDFQEFRLTKSILFICCILLLAKVPKMALHIL-KFEIGIELDMEIKFHLFVEFFDQIYYFIKSCFLYRYMCPKF 403
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000036502.1 (SMESG000036502.1) HSP 1 Score: 130.954 bits (328), Expect = 3.028e-32 Identity = 116/477 (24.32%), Postives = 205/477 (42.98%), Query Frame = 3 Query: 135 DTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYC--DYFLLPDKVDDWCKKLGCQNDVCTYLFDDASVTNAVITTTPK-------------------------------VAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHEQQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAKLIFSTKTIIVTILCFIIVLFGFTVVKCFEMTVALKPS-GAYSVHFTDIGMNENFHNLITNWLKVPLEYFGPLLG--------FIALLSMMYTSLGEQGISMNKLT--------------------EKKCANYKKLI--KNLVIV------NESEREDRILISVLLMSTIAIIIKLPKFIHHILVNEEANVSFDRLHYIMLSYIVLDAIFIFMKPFIYIYISPNY 1355 + ++ LD LP ++AL K + K A + C + + +K+ +WC L C S+ N I P+ V CYD ++C+ A +Y +G++C + ++ ++ ++LP F + R G + LT++ + + I +I I I ++ + QL +YS++ A IP+ LP + + WI +L +R+LY + G H+K+I S K I +I+L +T+ K E V P G V +T++G NE+F N++ +WLKVP+E F P L I +MY + S NK EK A + L N+ V + ++E+ +++ L++ + I +K+PKFI H L +E+ V + LD ++F+KP I+I ++ ++ Sbjct: 3 EDSSSSLDLLPTYEDALKSSKEAYYKAANGVFEHRTTCLSSFAEVYEKLYEWCVALNCV----------GSLENCKIPPYPETGVISTSISLISTISIQPHPLVTSSYSQLMNVVGYNGTCYDDYYCNQRSVAPYLHYILGITCLIMCLIGILTTSLFLPVFNVASHRTGVTLYLTAIAIIDCIYMILFTVIVVIQYIPYEYTSQLDMYSRFTAHLIPHGLPTLQLMELLSVWITVAVLIDRFLYLKFGFHSKIICSRKASAKIIASILILLLIYTIPKFLEYHVINYPKLGVLRVMYTEVGFNESFQNMLLHWLKVPIEMFLPYLADAIFSVINSIKFYDLMYKRKLSEA-SKNKRRNAELNATDENDVKSMMFPEFEKDTAKFPSLTVDSNMPKVITSSLKDAEDKENSMVVMSLILGFLLIALKIPKFILHALKSEQY-VDLKSTKFFQPVNDFLDLSWVFLKPIIFICVAKHF 467
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000026416.1 (SMESG000026416.1) HSP 1 Score: 60.8474 bits (146), Expect = 1.587e-9 Identity = 39/165 (23.64%), Postives = 83/165 (50.30%), Query Frame = 3 Query: 303 QNDVCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHE-QQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAK 794 +N + YL D+ ++N + + T ++ + CYD ++C+ A + + GV + + LI+NI+ +P +L G R+ + ++ + + L+I + + I ++ + + QL +Y +VA +P+ P +S Q + L+++RY Y + K K Sbjct: 13 ENSIKHYLADN--LSNPISSETSSLSKIVS-CYDDYYCNNYELAHLGHVLFGVFGLILTLAGLILNILLIPVMSLVGIRSSATYYMIAMAISDSCLLIINLILVVIRYLPGAEQMDQLLMYQNFVAFLVPFGSPAKSVCQILSLCFCTALIWDRYSYLRIEKKPK 174
BLAST of SMED30028957 vs. Planmine SMEST
Match: SMESG000026416.1 (SMESG000026416.1) HSP 1 Score: 60.4622 bits (145), Expect = 1.613e-9 Identity = 39/165 (23.64%), Postives = 83/165 (50.30%), Query Frame = 3 Query: 303 QNDVCTYLFDDASVTNAVITTTPKVAALAKHCYDIFFCSPSWSAGINYYSIGVSCFVFLVVALIMNIIYLPSFTLYGQRNGTDILLTSLVLCNIILIIFTIYIDCIPFVQKSHE-QQLYLYSKYVALFIPYILPLQSFFQTMDSWILCLLLFERYLYQQHGKHAK 794 +N + YL D+ ++N + + T ++ + CYD ++C+ A + + GV + + LI+NI+ +P +L G R+ + ++ + + L+I + + I ++ + + QL +Y +VA +P+ P +S Q + L+++RY Y + K K Sbjct: 4 ENSIKHYLADN--LSNPISSETSSLSKIVS-CYDDYYCNNYELAHLGHVLFGVFGLILTLAGLILNILLIPVMSLVGIRSSATYYMIAMAISDSCLLIINLILVVIRYLPGAEQMDQLLMYQNFVAFLVPFGSPAKSVCQILSLCFCTALIWDRYSYLRIEKKPK 165 The following BLAST results are available for this feature:
BLAST of SMED30028957 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30028957 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30028957 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30028957 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30028957 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30028957 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30028957 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30028957 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of SMED30028957 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30028957 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30028957 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30028957 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30028957 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30028957 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30028957 ID=SMED30028957|Name=SMED30028957|organism=Schmidtea mediterranea sexual|type=transcript|length=1663bpback to top protein sequence of SMED30028957-orf-1 >SMED30028957-orf-1 ID=SMED30028957-orf-1|Name=SMED30028957-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=467bp MDTDTALLDKLPFLDEALSLPKSEFNKIAKAFINYSAYCDYFLLPDKVDDback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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