DNA-directed RNA polymerase

Overview


Name	DNA-directed RNA polymerase
Smed ID	SMED30028902
Length (bp)	3505

Neoblast Clusters

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Neoblast Population

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.

Expression of DNA-directed RNA polymerase (SMED30028902) t-SNE clustered cells

Violin plots show distribution of expression levels for DNA-directed RNA polymerase (SMED30028902) in cells (dots) of each of the 12 neoblast clusters.

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of DNA-directed RNA polymerase (SMED30028902) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for DNA-directed RNA polymerase (SMED30028902) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30028902

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 7

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication
X1 cell	SMED30028902	h1SMcG0018621	SmedASXL_013036	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
X2 cell	SMED30028902	h1SMcG0018621	SmedASXL_013036	SmedAsxl_ww_GCZZ01	PMID:26114597 Zhu et al., 2015
gut	SMED30028902	h1SMcG0018621	dd_Smed_v4_5515_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
neoblast	SMED30028902	h1SMcG0018621	dd_Smed_v4_5515_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
parenchymal cell	SMED30028902	h1SMcG0018621	dd_Smed_v4_5515_0_1	dd_Smed_v4	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30028902	h1SMcG0018621	Contig40691	uc_Smed_v2	PMID:29674431 Fincher et al., 2018
Smed sexual biotype	SMED30028902	h1SMcG0018621	Contig40691	newmark_ests	PMID:29674431 Fincher et al., 2018

Note: Hover over icons to view figure legend

Homology

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BLAST of DNA-directed RNA polymerase vs. Ensembl Human
Match: POLRMT (RNA polymerase mitochondrial [Source:HGNC Symbol;Acc:HGNC:9200])

HSP 1 Score: 507.679 bits (1306), Expect = 4.715e-159
Identity = 336/1014 (33.14%), Postives = 534/1014 (52.66%), Query Frame = 1

Query:  583 TYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETC-----------IFSSIDELEKFFEVQLNNEILTSVNVDPIHNVTVNPEILK----KVILIEDTWRSSLTEAYEKKITLLE---YSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKL------SENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFY---NGITAVTTPVIYEKLE-EDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ--PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLP------IKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFAD-----------------DSDI-LKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
             +H   +K  ++    Y  +M   A+ G    ++ +L  + +  + P++      ++   + +  +   + R +  +    + L+       +++E+ + +LKA+  ++P F++    P   N S L               +   +  L+  FE QL+ E+ + V V  +   T+  + +K     +  + D W  +L  A  +    LE   Y  R  LYP+L +L  +  V  ++QV+  L    E  F  +         + +  F    +++Q+   Q++++   Y   L      +E P+     + WE      + +   + +   W   ++  +GK+L E++ +             ++   PV+Y      +  ++ I     + ++ + KA    L  F  +D+PM  PP+P+   H SG F L+   T+++R         + LE   P  +    +AL  L  C+W++    LDLV+Q+F   G  +L +P   ++   P+ P   LP       K +L    ++ Q V   +EM+SL +   Y++ +AQ L+++ FW P++MDFRGR YPC PH +H+G DV+R LL F+ G+ LGP GLDW+KIHL+NL G  KR+    RL  A EV+ +++DSA  P  GR WW  +E+PWQTLA C E+   ++       P  + S LP+HQDGSCNGLQHYAALG+D+ GAA+VNL  S+ PQDVYS V   +EV R++DA+ G+  A +LEG ++RKV+KQTVMT VYGVT+YGG LQI + L+ L   P + +   + YL +    S+ E+F+    IQ+W  E +  IS +  + + W TP+   V QPY  D                 + DI  K +  K KN FPPNFIHSLDS+HMMLTAL C+ K +TFVSVHDC+WTHA DV  MN++CRE+FV+LHS+PIL++LS +L+++  F   P +     ++   + L+ +PK G FD+ +V  STYFFS
Sbjct:  248 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ-DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGE-SFTTLAR------ELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWE-----ELGAPEALREQ-PWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTL-TFEAVDVPMLCPPLPWTSPH-SGAFLLS--PTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSE--APQPPEAHLPHSAAPARKAELRRELAHCQKVA--REMHSLRAEALYRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVR----ASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHM-GSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKR--FCSEPQKILEASQL--KETLQAVPKPGAFDLEQVKRSTYFFS 1230

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BLAST of DNA-directed RNA polymerase vs. Ensembl Human
Match: POLRMT (RNA polymerase mitochondrial [Source:HGNC Symbol;Acc:HGNC:9200])

HSP 1 Score: 129.798 bits (325), Expect = 1.755e-34
Identity = 53/78 (67.95%), Postives = 69/78 (88.46%), Query Frame = 1

Query: 3100 KNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKY 3333
            K KN FPPNFIHSLDS+HMMLTAL C+ K +TFVSVHDC+WTHA DV  MN++CRE+FV+LHS+PIL++LS +L++++
Sbjct:   31 KQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRF 108

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BLAST of DNA-directed RNA polymerase vs. Ensembl Celegans
Match: rpom-1 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q8WQA3])

HSP 1 Score: 418.313 bits (1074), Expect = 4.640e-127
Identity = 284/781 (36.36%), Postives = 431/781 (55.19%), Query Frame = 1

Query: 1270 SELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYE----KLEEDA-----GKVFIT--LKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISK------VYNALNVLSLCSWKIENANLDLVMQVFNDSGNM-------KLKIPTSANKFNGPE----------KPAVDLPIKDKLNSW-KSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGL-------LSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFA----DDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKY----QFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            S+ QF+ ++ +   +GN       +    + + + ++ +  + Y+     + QN   +  W  S      +     +  +   + +  +  +L  ++F++  F + +  + VT    +      +EE++     G++ ++  L I SKL  +F         FS  ++PM  PP P+      G  Y T+    IIRK   F     + E    I+       V++ALN L    W I    LD++  VF  SGN        KL+IP   + F+ P+          K  VD+   +K  S+ K   + +K + E  SLW  + Y++++A   + +  ++P++MDFRGRVYP SP+LSH+GDDV+R +L+F+  +KLG KG DW+K+H INL GT KR S +DR+  A  +I  ++DSA +P +G+ WW  S++PWQTLA C EI    ++         F S LPIHQDGSCNGLQHYAALG+D +G   VNL QS+TP DVYSDV + +E KR++D ++  E+  +   L       + RKVIKQTVMTTVYGVT YG  LQI R+LK ++ +P ++    A YL++ T  S+ + F S+  +++WF  ++   S L K  + W TP+   V QPY          IL    +K  +AFPPNF+HSLDSTHMMLT+L+C ++ ITF +VHDCFWTHA  VD+MN+ICR++FV LHSQPI+E  S++  + Y      +I P ++       ++++     + G  DI +V DS YFFS
Sbjct:  375 SQFQFDVLEPILKELGNAFKKEMGY---DENEIWKRVFATYIDYFSDSEISRQNTHRE-WWNKSCKTQGITSDFQFEMGNMDSETRNEVCNVLINVIFDSCLFPYESKDSKVTWQRAFSYRSISIEEESKVSTDGRLSLSRMLSINSKLMGLFDKNPFNFIVFSTSNLPMIVPPRPWIDRGTGGPLYTTS-QHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDALNQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIKKEDVDV---EKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQTLFFPHNMDFRGRVYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINLTGTMKRSSVADRMVEAERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVAL---FPSQLPIHQDGSCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMD-IPGEDAAIFARYLARKTFASLNDAFTSSMALKDWFRLIAKGSSDLMKT-VEWITPLGLPVVQPYCKLVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAVHDCFWTHANSVDQMNEICRQQFVSLHSQPIVEQCSEWFKKTYLTPKMAKILPEKDFQ----KYSEIFTANIEHGDLDIEKVKDSVYFFS 1138

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Query: 1270 SELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYE----KLEEDA-----GKVFIT--LKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISK------VYNALNVLSLCSWKIENANLDLVMQVFNDSGNM-------KLKIPTSANKFNGPE----------KPAVDLPIKDKLNSW-KSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGL-------LSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFA----DDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKY----QFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            S+ QF+ ++ +   +GN       +    + + + ++ +  + Y+     + QN   +  W  S      +     +  +   + +  +  +L  ++F++  F + +  + VT    +      +EE++     G++ ++  L I SKL  +F         FS  ++PM  PP P+      G  Y T+    IIRK   F     + E    I+       V++ALN L    W I    LD++  VF  SGN        KL+IP   + F+ P+          K  VD+   +K  S+ K   + +K + E  SLW  + Y++++A   + +  ++P++MDFRGRVYP SP+LSH+GDDV+R +L+F+  +KLG KG DW+K+H INL GT KR S +DR+  A  +I  ++DSA +P +G+ WW  S++PWQTLA C EI    ++         F S LPIHQDGSCNGLQHYAALG+D +G   VNL QS+TP DVYSDV + +E KR++D ++  E+  +   L       + RKVIKQTVMTTVYGVT YG  LQI R+LK ++ +P ++    A YL++ T  S+ + F S+  +++WF  ++   S L K  + W TP+   V QPY          IL    +K  +AFPPNF+HSLDSTHMMLT+L+C ++ ITF +VHDCFWTHA  VD+MN+ICR++FV LHSQPI+E  S++  + Y      +I P ++       ++++     + G  DI +V DS YFFS
Sbjct:  375 SQFQFDVLEPILKELGNAFKKEMGY---DENEIWKRVFATYIDYFSDSEISRQNTHRE-WWNKSCKTQGITSDFQFEMGNMDSETRNEVCNVLINVIFDSCLFPYESKDSKVTWQRAFSYRSISIEEESKVSTDGRLSLSRMLSINSKLMGLFDKNPFNFIVFSTSNLPMIVPPRPWIDRGTGGPLYTTS-QHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDALNQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIKKEDVDV---EKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQTLFFPHNMDFRGRVYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINLTGTMKRSSVADRMVEAERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVAL---FPSQLPIHQDGSCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMD-IPGEDAAIFARYLARKTFASLNDAFTSSMALKDWFRLIAKGSSDLMKT-VEWITPLGLPVVQPYCKLVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAVHDCFWTHANSVDQMNEICRQQFVSLHSQPIVEQCSEWFKKTYLTPKMAKILPEKDFQ----KYSEIFTANIEHGDLDIEKVKDSVYFFS 1138

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BLAST of DNA-directed RNA polymerase vs. Ensembl Celegans
Match: rpom-1 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q8WQA3])

HSP 1 Score: 407.912 bits (1047), Expect = 4.944e-123
Identity = 285/799 (35.67%), Postives = 434/799 (54.32%), Query Frame = 1

Query: 1270 SELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYE----KLEEDA-----GKVFIT--LKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISK------VYNALNVLSLCSWKIENANLDLVMQVFNDSGNM-------KLKIPTSANKFNGPE----------KPAVDLPIKDKLNSW-KSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGL-------LSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNI---------KSCAA---------YLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFA----DDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKY----QFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            S+ QF+ ++ +   +GN       +    + + + ++ +  + Y+     + QN   +  W  S      +     +  +   + +  +  +L  ++F++  F + +  + VT    +      +EE++     G++ ++  L I SKL  +F         FS  ++PM  PP P+      G  Y T+    IIRK   F     + E    I+       V++ALN L    W I    LD++  VF  SGN        KL+IP   + F+ P+          K  VD+   +K  S+ K   + +K + E  SLW  + Y++++A   + +  ++P++MDFRGRVYP SP+LSH+GDDV+R +L+F+  +KLG KG DW+K+H INL GT KR S +DR+  A  +I  ++DSA +P +G+ WW  S++PWQTLA C EI    ++         F S LPIHQDGSCNGLQHYAALG+D +G   VNL QS+TP DVYSDV + +E KR++D ++  E+  +   L       + RKVIKQTVMTTVYGVT YG  LQI R+LK ++ +P ++          K+ A+         YL++ T  S+ + F S+  +++WF  ++   S L K  + W TP+   V QPY          IL    +K  +AFPPNF+HSLDSTHMMLT+L+C ++ ITF +VHDCFWTHA  VD+MN+ICR++FV LHSQPI+E  S++  + Y      +I P ++       ++++     + G  DI +V DS YFFS
Sbjct:  375 SQFQFDVLEPILKELGNAFKKEMGY---DENEIWKRVFATYIDYFSDSEISRQNTHRE-WWNKSCKTQGITSDFQFEMGNMDSETRNEVCNVLINVIFDSCLFPYESKDSKVTWQRAFSYRSISIEEESKVSTDGRLSLSRMLSINSKLMGLFDKNPFNFIVFSTSNLPMIVPPRPWIDRGTGGPLYTTS-QHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDALNQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPMRHDTFDIPDFGREFGIGIKKEDVDV---EKFRSYAKKKAEAIKMRNESNSLWCWMQYRVVLADHFRGQTLFFPHNMDFRGRVYPLSPYLSHMGDDVNRCILKFAKSQKLGEKGFDWLKLHCINLTGTMKRSSVADRMVEAERLIPLMLDSARDPLNGQKWWMSSDEPWQTLAACVEIENATRYGSDVAL---FPSQLPIHQDGSCNGLQHYAALGRDNEGGVQVNLTQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVPRKVIKQTVMTTVYGVTMYGAVLQIKRQLKAMD-IPGEDAAIFARYLARKTFASLNDAAIFARYLARKTFASLNDAFTSSMALKDWFRLIAKGSSDLMKT-VEWITPLGLPVVQPYCKLVERKGKLILAPVPMKQVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAVHDCFWTHANSVDQMNEICRQQFVSLHSQPIVEQCSEWFKKTYLTPKMAKILPEKDFQ----KYSEIFTANIEHGDLDIEKVKDSVYFFS 1156

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BLAST of DNA-directed RNA polymerase vs. Ensembl Fly
Match: mtRNApol (gene:FBgn0261938 transcript:FBtr0332273)

HSP 1 Score: 503.827 bits (1296), Expect = 1.323e-156
Identity = 346/1064 (32.52%), Postives = 528/1064 (49.62%), Query Frame = 1

Query:  502 TYMDVCIQKGDYEKALSLFNSVRNE--NETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPN---ISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPEL-------------------KNKSALKETCIFSS-----IDELEKFFEVQLNNEILTSVNVDPIHNVT--VNPEILKKVIL-IEDTWRSSLTEAYEKKITLLEYSDRSK------LYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSG-SIVHDTIDWSKKIKASIGKILYEIMFENMNFTFY-----NGITAVTTP-----VIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ-PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFN------GPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPY------------FADDSDIL-----KSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQ----INPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            TY++VC+      +ALS   + R +    +   + +  I +D   Y  ++   A  G  D    +   ++E  +  N    + IF  +     +E  N +++   +   +    SL + + ++    +     L A++ + P+F  +   P+L                   K +    +  I +S       +LE+    QL  E+  S+ +  I       N E  ++++  +EDTWR  ++ A  + +  L    R K       Y YL  L    + D +I+ +++L+  SE     +  ++  +G  +   ++    K      ++  I  SY              + W+  + E  +SG S+    + W   +   +G+ LY I+  ++    +     +   A   P       Y         V   +K    L  +F+A  +    F    +PM  PP P+   H  G  YL N    I         +D  +   P  +    ++LN L+   W++    LD++++VF + G++KL +P   +           +        +D+   ++      ++Q EMYSLW    Y++ +AQ  ++K FW P++MDFRGRVYP  PHL+H+G D++R +L F   + LG  GL W+K+H INL G  KR S  +RL  A E++ +++DSA NP  GR WW  S++PWQTLA C EI  + +       P  + S  PIHQDGSCNGLQHYAALG+D  GA +VNL  S  PQDVYS V   +E  RK DA+NG+  A  L G + RKVIKQTVMTTVYGVT+YG  LQI R+LK+++  P   +   + YL+  T  S+ E+F S   IQ+WF E +  IS +   N+ W TP+   V QPY            F   +++      + + LK KNAFPPNFIHSLDS+HMMLT+L C  + ITFVSVHDCFWTHA  V E+N++CRE+FV LHSQPILE LS+++   Y F+    IN    ++  K   N++LK +P+KG FD+R VLDS YFFS
Sbjct:  315 TYLNVCVSANMLNRALSTIIAYRGKVRKSSLPHMSEGLITID--LYNILLHGYAGKGSFDRAQEVFKLIEEDGLSFNEQTYAAIFECLGRLEPDEE-NHQYISEYVSKAEKEGFSLNQIMDRSKFVADQRDIALDAIRRLRPDFKPVYVPPQLGYDNELLDHLNEHVIPVGAKKEPGKADYAIMNSKRGYTAAQLEQLAREQLKIELDGSITIKSIEKSKEFANSEKCRELLKELEDTWRKQISAAIVRDLNTLRAQVRFKPHGFMNYYTYLKTLDASHFADILIKELYKLAEGSETFSPTVGQLYKELGQKVQQRYQIEQKKHNGTLEKIGEIYSSYCELWGSGMSQDNTRQAWQRLVYEQRESGPSMDLLEVPWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGG--YLLNKTELIRLPHQAIQQWDRIMASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDVKLDVPQPPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDKLGHRRKQAEMYSLWCDALYRLSLAQHYRDKVFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGLSWLKLHCINLTGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANVHRC----PDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVEKSRKADAQNGLHVAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIDDFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHANTVPELNRMCREQFVALHSQPILEQLSEFMRHTYSFKDSDFINDGSVEDLSKRQLNRILKQMPQKGDFDLRNVLDSVYFFS 1369

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Fly
Match: mtRNApol (gene:FBgn0261938 transcript:FBtr0077989)

HSP 1 Score: 503.827 bits (1296), Expect = 1.323e-156
Identity = 346/1064 (32.52%), Postives = 528/1064 (49.62%), Query Frame = 1

Query:  502 TYMDVCIQKGDYEKALSLFNSVRNE--NETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPN---ISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPEL-------------------KNKSALKETCIFSS-----IDELEKFFEVQLNNEILTSVNVDPIHNVT--VNPEILKKVIL-IEDTWRSSLTEAYEKKITLLEYSDRSK------LYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSG-SIVHDTIDWSKKIKASIGKILYEIMFENMNFTFY-----NGITAVTTP-----VIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ-PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFN------GPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPY------------FADDSDIL-----KSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQ----INPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            TY++VC+      +ALS   + R +    +   + +  I +D   Y  ++   A  G  D    +   ++E  +  N    + IF  +     +E  N +++   +   +    SL + + ++    +     L A++ + P+F  +   P+L                   K +    +  I +S       +LE+    QL  E+  S+ +  I       N E  ++++  +EDTWR  ++ A  + +  L    R K       Y YL  L    + D +I+ +++L+  SE     +  ++  +G  +   ++    K      ++  I  SY              + W+  + E  +SG S+    + W   +   +G+ LY I+  ++    +     +   A   P       Y         V   +K    L  +F+A  +    F    +PM  PP P+   H  G  YL N    I         +D  +   P  +    ++LN L+   W++    LD++++VF + G++KL +P   +           +        +D+   ++      ++Q EMYSLW    Y++ +AQ  ++K FW P++MDFRGRVYP  PHL+H+G D++R +L F   + LG  GL W+K+H INL G  KR S  +RL  A E++ +++DSA NP  GR WW  S++PWQTLA C EI  + +       P  + S  PIHQDGSCNGLQHYAALG+D  GA +VNL  S  PQDVYS V   +E  RK DA+NG+  A  L G + RKVIKQTVMTTVYGVT+YG  LQI R+LK+++  P   +   + YL+  T  S+ E+F S   IQ+WF E +  IS +   N+ W TP+   V QPY            F   +++      + + LK KNAFPPNFIHSLDS+HMMLT+L C  + ITFVSVHDCFWTHA  V E+N++CRE+FV LHSQPILE LS+++   Y F+    IN    ++  K   N++LK +P+KG FD+R VLDS YFFS
Sbjct:  315 TYLNVCVSANMLNRALSTIIAYRGKVRKSSLPHMSEGLITID--LYNILLHGYAGKGSFDRAQEVFKLIEEDGLSFNEQTYAAIFECLGRLEPDEE-NHQYISEYVSKAEKEGFSLNQIMDRSKFVADQRDIALDAIRRLRPDFKPVYVPPQLGYDNELLDHLNEHVIPVGAKKEPGKADYAIMNSKRGYTAAQLEQLAREQLKIELDGSITIKSIEKSKEFANSEKCRELLKELEDTWRKQISAAIVRDLNTLRAQVRFKPHGFMNYYTYLKTLDASHFADILIKELYKLAEGSETFSPTVGQLYKELGQKVQQRYQIEQKKHNGTLEKIGEIYSSYCELWGSGMSQDNTRQAWQRLVYEQRESGPSMDLLEVPWPSNVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKEEVKPHPVLSRLFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGG--YLLNKTELIRLPHQAIQQWDRIMASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDVKLDVPQPPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDKLGHRRKQAEMYSLWCDALYRLSLAQHYRDKVFWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGLSWLKLHCINLTGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANVHRC----PDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVEKSRKADAQNGLHVAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKDIDDFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVTPLGLPVVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNILKQKNAFPPNFIHSLDSSHMMLTSLHCERQGITFVSVHDCFWTHANTVPELNRMCREQFVALHSQPILEQLSEFMRHTYSFKDSDFINDGSVEDLSKRQLNRILKQMPQKGDFDLRNVLDSVYFFS 1369

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BLAST of DNA-directed RNA polymerase vs. Ensembl Zebrafish
Match: polrmt (polymerase (RNA) mitochondrial (DNA directed) [Source:ZFIN;Acc:ZDB-GENE-030131-1528])

HSP 1 Score: 525.013 bits (1351), Expect = 3.203e-165
Identity = 358/1041 (34.39%), Postives = 557/1041 (53.51%), Query Frame = 1

Query:  505 YMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNI-------ICNKPELKNKSALKETCIFSSID----ELEKFFEVQLNNEILTSV---NVDPIHNVTVNPEILKKVILIEDT-WRSSLTEAYEKKITLL----EYSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIEM--DKLWES-SIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFT---FYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLE--QPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYF--QFVKEQK---EMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPD--DFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKI----AFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            Y++ C+   D  +A +   S       +  + K+S +  S  Y  +M++ AK G I+ I  L + ++E  + PN++     +E   + +   T  + R +  +    +S++  + +    K+    +L+A+Q++ P+F         +C+ P +K   A +E  I+  +D    EL+  F +QL  E  T+V   +V+ +  VT N   +++++  +   W  +L +A + +  ++    + S  + LYPYL +L  + YVD M+Q + +LS + E     +  +   +GN + N++  R   + +   +L+SI  SY   L+ + +   M   + W +  I  N    S++ D   W   +   +G  L ++M   +          +     P++Y      +      +K    L  I +   +    F    MPM  PPVP+  + +SG + LT    +++R S         LE  Q +D+  V ++LN +  C WKI    LD+++ +FND G+ KL IP   ++   PE P  +          K++   + +K +K   EM+SL     YK+ IA  +++K FW+P++MDFRGR YP  P+ +H+G DV+R LL F+ G+ LGPKGLDW+KIHL+NL G  K+ S   RL+ A  ++ +++DSA +P DGR WW  +++PWQ LA C EI        ++  PD   F S  P+HQDGSCNGLQHYAALG+D  GA +VNL+    PQDVYS V + +E  R  DA+ G++ A +L+G +SRKV+KQTVMT VYGVT+YGG LQI + LK ++  P   +   + YL      S+ E+F     IQ W  E +  I++  +  + W TP+   + QPY    + ILK                  D +K KNAFPPNFIHSLDSTHMMLT+L C    +TFVSVHDC+WTHA  VD MN++CRE+FV LHSQPILE LS +LL+KY  +  P      +K+       K+L ++P+ G FD+ +V DS YFFS
Sbjct:  266 YLEACMFLDDVSRAQNYLLS------HHRQLSKRSQLSISA-YNIVMRMWAKKGSINNIRRLFSLIEEAGMKPNVTSYCAALECMGRMQNCETVVIARCLQQMGADGLSVDDVLSQCVFKKDEREMVLRAVQLVIPHFQPSVSKTQPVCSLPLVKQFYAEREDAIYPKLDYSLKELQDRFNLQLAMEKATTVTINSVEALKPVTENMAHMRELLAKQRKHWEKALLQALKDRKQMMSNNSQKSWNTCLYPYLCILDDQEYVDIMLQSLDKLSPNGE----SLLFMADEMGNRVYNLYCIRQKSQSQMVEKLRSIYSSYAELLANDTETNGMLPRECWTNLEISGNRSGPSLLSDDTPWPMILMVQLGSFLVDLMVHELKIQSNILNPALEKKLIPILYHMYTFRSNHKIGFIKPHPILTRILREATETKLTFDSYVMPMLCPPVPW-TSPKSGAYLLT--PAKLMRASDGAMQHQLLLEKTQEEDLHAVLDSLNQVGSCPWKINKPLLDIIISIFNDKGSDKLSIPPPLSE--APEIPRFNPHDPSYTQVEKAFMKREGIKAKKVVAEMHSLRMDALYKLSIANHVRDKIFWFPHNMDFRGRTYPLPPYFNHLGSDVTRALLLFAEGRPLGPKGLDWLKIHLVNLTGLKKQSSLDGRLEYAESIMEDILDSADHPLDGRKWWMNADEPWQALACCMEI------ANASRSPDHHKFISYFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCALPQDVYSGVAKQVEEFRVRDAERGLKIAQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKDYVWDASHYLVVQVFNSLKEMFTGTREIQEWLTESARLIAKSGR-TVEWVTPLGLPIIQPYHRIRNQILKGNIQNLNIHISHDANEKPDSMKQKNAFPPNFIHSLDSTHMMLTSLHCHRAGLTFVSVHDCYWTHAVTVDIMNRVCREQFVALHSQPILEELSWFLLQKYSRR--PPVGSKPKKLLEYYTLMKVLSSVPQTGDFDLEKVKDSVYFFS 1281

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806])

HSP 1 Score: 534.258 bits (1375), Expect = 3.125e-169
Identity = 354/1040 (34.04%), Postives = 546/1040 (52.50%), Query Frame = 1

Query:  502 TYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNI------ICNKPELKNKSALKETCIFS----SIDELEKFFEVQLNNEILTSVNVDPIHNVTVNPEILKKVILIEDT----WRSSLTEAYEKKITLLEY----SDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSE--LQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQ--NIEMDKLWESSIMENIDSGSIVH-DTIDWSKKIKASIGKILYEIMFENM---NFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ--PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIP---TSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL-----LKNIPKKGTFDIREVLDSTYFFS 3462
            +Y++VC+   D E+A    N        YH    +  ++    Y  +MK  AK G +  I  L   ++E  + PN+      +E  +++    T+ +   +  ++   +S+ +   + P  ++    IL A+  + PN+ +      +C  P +KN  + +    +     ++ EL   FE Q+  E   ++ +D +  +    E  K+   + D     W+ +L +A+      LE     S R  LYPYL +L    YVD M+Q +  +    E  L  +R       +G  I+N +      ++ +  +++ +   Y   L++N +   +   ++WE    +     S+++ DTI W   +   +G  L ++M + +   N    +       PV+Y      + K    +K       I     ++   F    MPM  PPVP+       +        R +  +    +    LE+  P  +  V ++LN L +C+W+I    LD+++ +FN+ GN KL IP   + A K   PE+P  DL  +DK+   +   +  K+  EM+SL     YK+ IA  L++K FW+P++MDFRGR YPC P+ +H+G DV+R LL F+ G+ LGPKGL+W+K HLINL G  KR S  +R + A+ V+ +++DSA NP  G+ WW  +++PWQ LA C EI         +  P  + S  P+HQDGSCNGLQHYAALG+D  GA +VNL+  + PQDVYS V + +E  RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+  P + +   + YL +    S+ E+F+    IQ W  E +  IS+     + W+TP+   + QPY      + +S                 D +K KNAFPPNFIHSLDSTHMMLTAL C+   +TFVSVHDCFWTH   VD MNK+CRE+FV LHSQPIL+NLS +LL+KY   ++   +D   K++   L       N+P+ G FD+++V+DSTYFFS
Sbjct:  197 SYLEVCVFLKDLERAQMCLN-------FYHHRSSRRSLLTIAMYNLLMKAWAKKGSVTNIGHLFMMLEEAGLKPNLGSYAAALECMARSST-ATKSIQMCLSQMEEDGLSINQLFQEFPYQEDERELILNAVHKVHPNYQLPIQPKTVCTSPLVKNFYSKEPPPSYPKLEFTLSELCNRFEEQMAIESCDTITIDSVEAIKPIAEGQKQARDLLDALRARWKKALLQAFRDSKKHLEMKSRISPRVNLYPYLCLLGEDQYVDIMLQSLASIPPTGESFLVMSR------DMGTKINNRYSIHKKLQESHINRIQDLYRDYCQLLAKNGKVSGLLPREMWEQLEQKKYGGASLMNLDTI-WPNSLLVQLGTHLVDLMVQEIKVPNDLLSSRDDPKLIPVLYHMYSFRSTKQIGLIKPHPIFSQIQSDAGESCLTFESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGAVQHQLL---LEKSPPGQLYPVLDSLNQLGMCAWRINQPILDIIVSIFNEKGNEKLDIPPPLSEAPKL--PEQPHGDLNSRDKMMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDKIFWFPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKTHLINLTGLKKRNSLQERKEYADSVMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAN----ASRSPDPTKYISHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDIPQDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTESARMISK-SGNTVEWQTPLGLPIIQPYHRTKPVLFQSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKYCQTLS---SDKMAKMSPENLRMTLHFSNVPETGNFDLKQVIDSTYFFS 1208

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806])

HSP 1 Score: 533.872 bits (1374), Expect = 6.033e-169
Identity = 354/1040 (34.04%), Postives = 546/1040 (52.50%), Query Frame = 1

Query:  502 TYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNI------ICNKPELKNKSALKETCIFS----SIDELEKFFEVQLNNEILTSVNVDPIHNVTVNPEILKKVILIEDT----WRSSLTEAYEKKITLLEY----SDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSE--LQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQ--NIEMDKLWESSIMENIDSGSIVH-DTIDWSKKIKASIGKILYEIMFENM---NFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ--PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIP---TSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL-----LKNIPKKGTFDIREVLDSTYFFS 3462
            +Y++VC+   D E+A    N        YH    +  ++    Y  +MK  AK G +  I  L   ++E  + PN+      +E  +++    T+ +   +  ++   +S+ +   + P  ++    IL A+  + PN+ +      +C  P +KN  + +    +     ++ EL   FE Q+  E   ++ +D +  +    E  K+   + D     W+ +L +A+      LE     S R  LYPYL +L    YVD M+Q +  +    E  L  +R       +G  I+N +      ++ +  +++ +   Y   L++N +   +   ++WE    +     S+++ DTI W   +   +G  L ++M + +   N    +       PV+Y      + K    +K       I     ++   F    MPM  PPVP+       +        R +  +    +    LE+  P  +  V ++LN L +C+W+I    LD+++ +FN+ GN KL IP   + A K   PE+P  DL  +DK+   +   +  K+  EM+SL     YK+ IA  L++K FW+P++MDFRGR YPC P+ +H+G DV+R LL F+ G+ LGPKGL+W+K HLINL G  KR S  +R + A+ V+ +++DSA NP  G+ WW  +++PWQ LA C EI         +  P  + S  P+HQDGSCNGLQHYAALG+D  GA +VNL+  + PQDVYS V + +E  RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+  P + +   + YL +    S+ E+F+    IQ W  E +  IS+     + W+TP+   + QPY      + +S                 D +K KNAFPPNFIHSLDSTHMMLTAL C+   +TFVSVHDCFWTH   VD MNK+CRE+FV LHSQPIL+NLS +LL+KY   ++   +D   K++   L       N+P+ G FD+++V+DSTYFFS
Sbjct:  216 SYLEVCVFLKDLERAQMCLN-------FYHHRSSRRSLLTIAMYNLLMKAWAKKGSVTNIGHLFMMLEEAGLKPNLGSYAAALECMARSSTA-TKSIQMCLSQMEEDGLSINQLFQEFPYQEDERELILNAVHKVHPNYQLPIQPKTVCTSPLVKNFYSKEPPPSYPKLEFTLSELCNRFEEQMAIESCDTITIDSVEAIKPIAEGQKQARDLLDALRARWKKALLQAFRDSKKHLEMKSRISPRVNLYPYLCLLGEDQYVDIMLQSLASIPPTGESFLVMSR------DMGTKINNRYSIHKKLQESHINRIQDLYRDYCQLLAKNGKVSGLLPREMWEQLEQKKYGGASLMNLDTI-WPNSLLVQLGTHLVDLMVQEIKVPNDLLSSRDDPKLIPVLYHMYSFRSTKQIGLIKPHPIFSQIQSDAGESCLTFESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGAVQHQLL---LEKSPPGQLYPVLDSLNQLGMCAWRINQPILDIIVSIFNEKGNEKLDIPPPLSEAPKL--PEQPHGDLNSRDKMMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDKIFWFPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKTHLINLTGLKKRNSLQERKEYADSVMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAN----ASRSPDPTKYISHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDIPQDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTESARMISK-SGNTVEWQTPLGLPIIQPYHRTKPVLFQSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKYCQTLS---SDKMAKMSPENLRMTLHFSNVPETGNFDLKQVIDSTYFFS 1227

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806])

HSP 1 Score: 514.612 bits (1324), Expect = 3.987e-162
Identity = 348/1030 (33.79%), Postives = 533/1030 (51.75%), Query Frame = 1

Query:  502 TYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNI------ICNKPELKNKSALKETCIFS----SIDELEKFFEVQLNNEILTSVNVDPIHNVTVNPEILKKVILIEDT----WRSSLTEAYEKKITLLEY----SDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSE--LQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASI-----GKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIP---TSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPY--------------FADDSDI-LKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            +Y++VC+   D E+A    N        YH    +  ++    Y  +MK  AK G +  I  L   ++E  + PN+      +E  +++    T  + R +  ++   +S+ +   + P  ++    IL A+  + PN+ +      +C  P +KN  + +    +     ++ EL   FE Q+  E   ++ +D +  +    E  K+   + D     W+ +L +A+      LE     S R  LYPYL +L    YVD M+Q +  +    E  L  +R             +M +   L  ++ + QL+      YG  S     + +D +W +S++  +  G+ + D +    K+   +        L  +++   +F     I  +    I+ +++ DAG+  +T                    F    MPM  PPVP+       +        R +  +    +  +    P  +  V ++LN L +C+W+I    LD+++ +FN+ GN KL IP   + A K   PE+P  DL  +DK+   +   +  K+  EM+SL     YK+ IA  L++K FW+P++MDFRGR YPC P+ +H+G DV+R LL F+ G+ LGPKGL+W+K HLINL G  KR S  +R + A+ V+ +++DSA NP  G+ WW  +++PWQ LA C EI         +  P  + S  P+HQDGSCNGLQHYAALG+D  GA +VNL+  + PQDVYS V + +E  RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+  P + +   + YL +    S+ E+F+    IQ W  E +  IS+     + W+TP+   + QPY                   D+  + D +K KNAFPPNFIHSLDSTHMMLTAL C+   +TFVSVHDCFWTH   VD MNK+CRE+FV LHSQPIL+NLS +LL+KY   ++       R +    L   +   G FD+++V+DSTYFFS
Sbjct:  230 SYLEVCVFLKDLERAQMCLN-------FYHHRSSRRSLLTIAMYNLLMKAWAKKGSVTNIGHLFMMLEEAGLKPNLGSYAAALECMARS----TFCIFRCLSQMEEDGLSINQLFQEFPYQEDERELILNAVHKVHPNYQLPIQPKTVCTSPLVKNFYSKEPPPSYPKLEFTLSELCNRFEEQMAIESCDTITIDSVEAIKPIAEGQKQARDLLDALRARWKKALLQAFRDSKKHLEMKSRISPRVNLYPYLCLLGEDQYVDIMLQSLASIPPTGESFLVMSR-------------DMDKVSGLLPREMWEQLEQ---KKYGGASL----MNLDTIWPNSLL--VQLGTHLVDLMVQEIKVPNDLLSSRDDPKLIPVLYHMYSFRSTKQIGLIKPHPIFSQIQSDAGESCLT--------------------FESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGAVQHQLLLEK-SPPGQLYPVLDSLNQLGMCAWRINQPILDIIVSIFNEKGNEKLDIPPPLSEAPKL--PEQPHGDLNSRDKMMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDKIFWFPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKTHLINLTGLKKRNSLQERKEYADSVMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAN----ASRSPDPTKYISHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDIPQDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTESARMISK-SGNTVEWQTPLGLPIIQPYHRTKPVLSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKYCQTLS-------RPMIILFLCFIV---GNFDLKQVIDSTYFFS 1188

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806])

HSP 1 Score: 511.146 bits (1315), Expect = 6.429e-161
Identity = 336/990 (33.94%), Postives = 517/990 (52.22%), Query Frame = 1

Query:  502 TYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNI------ICNKPELKNKSALKETCIFS----SIDELEKFFEVQLNNEILTSVNVDPIHNVTVNPEILKKVILIEDT----WRSSLTEAYEKKITLLEY----SDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSE--LQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQ--NIEMDKLWESSIMENIDSGSIVH-DTIDWSKKIKASIGKILYEIMFENM---NFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIP---TSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKY 3333
            +Y++VC+   D E+A    N        YH    +  ++    Y  +MK  AK G +  I  L   ++E  + PN+      +E  +++    T+ +   +  ++   +S+ +   + P  ++    IL A+  + PN+ +      +C  P +KN  + +    +     ++ EL   FE Q+  E   ++ +D +  +    E  K+   + D     W+ +L +A+      LE     S R  LYPYL +L    YVD M+Q +  +    E  L  +R       +G  I+N +      ++ +  +++ +   Y   L++N +   +   ++WE    +     S+++ DTI W   +   +G  L ++M + +   N    +       PV+Y      + K    +K       I     ++   F    MPM  PPVP+       +        R +  +    +  +    P  +  V ++LN L +C+W+I    LD+++ +FN+ GN KL IP   + A K   PE+P  DL  +DK+   +   +  K+  EM+SL     YK+ IA  L++K FW+P++MDFRGR YPC P+ +H+G DV+R LL F+ G+ LGPKGL+W+K HLINL G  KR S  +R + A+ V+ +++DSA NP  G+ WW  +++PWQ LA C EI         +  P  + S  P+HQDGSCNGLQHYAALG+D  GA +VNL+  + PQDVYS V + +E  RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+  P + +   + YL +    S+ E+F+    IQ W  E +  IS+     + W+TP+   + QPY      + +S                 D +K KNAFPPNFIHSLDSTHMMLTAL C+   +TFVSVHDCFWTH   VD MNK+CRE+FV LHSQPIL+NLS +LL+KY
Sbjct:  197 SYLEVCVFLKDLERAQMCLN-------FYHHRSSRRSLLTIAMYNLLMKAWAKKGSVTNIGHLFMMLEEAGLKPNLGSYAAALECMARSST-ATKSIQMCLSQMEEDGLSINQLFQEFPYQEDERELILNAVHKVHPNYQLPIQPKTVCTSPLVKNFYSKEPPPSYPKLEFTLSELCNRFEEQMAIESCDTITIDSVEAIKPIAEGQKQARDLLDALRARWKKALLQAFRDSKKHLEMKSRISPRVNLYPYLCLLGEDQYVDIMLQSLASIPPTGESFLVMSR------DMGTKINNRYSIHKKLQESHINRIQDLYRDYCQLLAKNGKVSGLLPREMWEQLEQKKYGGASLMNLDTI-WPNSLLVQLGTHLVDLMVQEIKVPNDLLSSRDDPKLIPVLYHMYSFRSTKQIGLIKPHPIFSQIQSDAGESCLTFESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGAVQHQLLLEK-SPPGQLYPVLDSLNQLGMCAWRINQPILDIIVSIFNEKGNEKLDIPPPLSEAPKL--PEQPHGDLNSRDKMMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDKIFWFPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKTHLINLTGLKKRNSLQERKEYADSVMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAN----ASRSPDPTKYISHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDIPQDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTESARMISK-SGNTVEWQTPLGLPIIQPYHRTKPVLFQSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKY 1163

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Xenopus
Match: pacrg (parkin co-regulated [Source:Xenbase;Acc:XB-GENE-6258806])

HSP 1 Score: 511.146 bits (1315), Expect = 1.023e-160
Identity = 338/992 (34.07%), Postives = 519/992 (52.32%), Query Frame = 1

Query:  502 TYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNI------ICNKPELKNKSALKETCIFS----SIDELEKFFEVQLNNEILTSVNVDPIHNVTVNPEILKKVILIEDT----WRSSLTEAYEKKITLLEY----SDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSE--LQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQ--NIEMDKLWESSIMENIDSGSIVH-DTIDWSKKIKASIGKILYEIMFENM---NFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ--PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIP---TSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKY 3333
            +Y++VC+   D E+A    N        YH    +  ++    Y  +MK  AK G +  I  L   ++E  + PN+      +E  +++    T+ +   +  ++   +S+ +   + P  ++    IL A+  + PN+ +      +C  P +KN  + +    +     ++ EL   FE Q+  E   ++ +D +  +    E  K+   + D     W+ +L +A+      LE     S R  LYPYL +L    YVD M+Q +  +    E  L  +R       +G  I+N +      ++ +  +++ +   Y   L++N +   +   ++WE    +     S+++ DTI W   +   +G  L ++M + +   N    +       PV+Y      + K    +K       I     ++   F    MPM  PPVP+       +        R +  +    +    LE+  P  +  V ++LN L +C+W+I    LD+++ +FN+ GN KL IP   + A K   PE+P  DL  +DK+   +   +  K+  EM+SL     YK+ IA  L++K FW+P++MDFRGR YPC P+ +H+G DV+R LL F+ G+ LGPKGL+W+K HLINL G  KR S  +R + A+ V+ +++DSA NP  G+ WW  +++PWQ LA C EI         +  P  + S  P+HQDGSCNGLQHYAALG+D  GA +VNL+  + PQDVYS V + +E  RK DA+ GV+ A +L+G + RKV+KQTVMT VYGVT+YGG LQI + L+ L+  P + +   + YL +    S+ E+F+    IQ W  E +  IS+     + W+TP+   + QPY      + +S                 D +K KNAFPPNFIHSLDSTHMMLTAL C+   +TFVSVHDCFWTH   VD MNK+CRE+FV LHSQPIL+NLS +LL+KY
Sbjct:  197 SYLEVCVFLKDLERAQMCLN-------FYHHRSSRRSLLTIAMYNLLMKAWAKKGSVTNIGHLFMMLEEAGLKPNLGSYAAALECMARSSTA-TKSIQMCLSQMEEDGLSINQLFQEFPYQEDERELILNAVHKVHPNYQLPIQPKTVCTSPLVKNFYSKEPPPSYPKLEFTLSELCNRFEEQMAIESCDTITIDSVEAIKPIAEGQKQARDLLDALRARWKKALLQAFRDSKKHLEMKSRISPRVNLYPYLCLLGEDQYVDIMLQSLASIPPTGESFLVMSR------DMGTKINNRYSIHKKLQESHINRIQDLYRDYCQLLAKNGKVSGLLPREMWEQLEQKKYGGASLMNLDTI-WPNSLLVQLGTHLVDLMVQEIKVPNDLLSSRDDPKLIPVLYHMYSFRSTKQIGLIKPHPIFSQIQSDAGESCLTFESSVMPMLCPPVPWLSPRFGAYLLSPAKLMRCMEGAVQHQLL---LEKSPPGQLYPVLDSLNQLGMCAWRINQPILDIIVSIFNEKGNEKLDIPPPLSEAPKL--PEQPHGDLNSRDKMMHQRELARCRKKSSEMHSLRMDALYKLSIASHLRDKIFWFPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKTHLINLTGLKKRNSLQERKEYADSVMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAN----ASRSPDPTKYISHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDIPQDVYSGVAQQVEEFRKRDAQRGVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELDNFPKEYVWEASHYLVQQVFSSLKEMFSGTREIQLWLTESARMISK-SGNTVEWQTPLGLPIIQPYHRTKPVLFQSNLQVVNLQSSHDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVMNKVCREQFVALHSQPILQNLSQFLLQKY 1163

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Mouse
Match: Polrmt (polymerase (RNA) mitochondrial (DNA directed) [Source:MGI Symbol;Acc:MGI:1915843])

HSP 1 Score: 499.204 bits (1284), Expect = 3.584e-156
Identity = 340/1013 (33.56%), Postives = 528/1013 (52.12%), Query Frame = 1

Query:  583 TYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETCIFS------------SIDELEKFFEVQLNNEILTSVNVDPIHNVTVNP----EILKKVILIEDTWRSSLTEAY-EKKITLLE--YSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQ--KYFAQLKSICLSYYGKLSENPQNIEM--DKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENM----NFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ--PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEK---PAVDLPI-KDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDS-----------------DILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL---LKNIPKKGTFDIREVLDSTYFFS 3462
            T+H+   +  ++    Y  +M   A+ G    ++ +   + +  + P++      ++   + +  +   + R +  +       +       + +E+ + +L+A+   EP F      P   N S L +  I+S             +D L+  F  QL+ E+ +SV V  +    V      E  K +  + + W   L     E K T+    Y  +  LYP+L +L    +V  ++QV+  L    E       ++ L + N      RH   +KQ   +  +L      Y   L+ + Q       + WES  +  +++ +       WS  +   +GK L E++ + +    +     G    + PV+Y      + +    LK       + +   +    F   ++PM  PP+P+   H SG + L++  T+++R +         LEQ  P  +    +AL  L  C+W++    LDLV+Q+F D G M L +P   ++   P +   P    P+ K +L   K   + +K  +EM+SL S   Y++ +AQ L+++ FW P++MDFRGR YPC PH +H+G D++R LL F+ G+ LGP+GLDW+KIHLINL G  K  S   RL  A+EV+ E++DSA NP  GR WW  +++PWQTLA C E+   ++    +  P  + S LP+HQDGSCNGLQHYAALG+D+ GAA+VNL  S+ PQDVY +V   +E  R++DAK G+  A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + L+ L   P + +   + YL +    S+ E+F S   IQ+W  E S+N+       + W TP+   + QPY  +                   +  K + LK KN FPPNFIHSLDS+HMMLTAL C+ K + FVSVHDCFWTHA D+  MN++CRE+FV+LHSQPILE+L+ +L +++    +     +  +    KL   L+++PK GTFD+ +V+ STYFFS
Sbjct:  220 THHNNGDRQQVLTLHMYNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGRRDQ-DVRTIQRCLKQMMEEGFQPQLLFTDLVLEEEDRAALLRAVVKAEPAFRPPPQAPSPVNTSTLLKD-IYSKEGPVSYPKLHLPLDTLQDLFYQQLHVELSSSVCVQSVEKAPVMSKEVIEARKTLQALREQWEVELLRVLRETKATMGRQAYEGQPTLYPFLCLLSEGEFVSILMQVLKVLPAQGEPLIQLAHNLGLRVLN------RHLVKQKQVTNHVQKLGQRYSQYLQLLASDTQVAPCLPREYWES--LGPLEAPA----QQPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQR-SIPVLYHVYSFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLH-SGAYLLSS--TKLMRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSEAPRPARYQLPPGSTPVHKSELR--KELARCLKVAREMHSLRSEALYRLSLAQHLRHRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLTGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVR----SPDPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDAKEGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTE-SANLISHAGWPVEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1207

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BLAST of DNA-directed RNA polymerase vs. Ensembl Mouse
Match: Polrmt (polymerase (RNA) mitochondrial (DNA directed) [Source:MGI Symbol;Acc:MGI:1915843])

HSP 1 Score: 468.774 bits (1205), Expect = 1.491e-145
Identity = 267/606 (44.06%), Postives = 377/606 (62.21%), Query Frame = 1

Query: 1723 FSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ--PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEK---PAVDLPI-KDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDS-----------------DILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL---LKNIPKKGTFDIREVLDSTYFFS 3462
            F   ++PM  PP+P+   H SG + L++  T+++R +         LEQ  P  +    +AL  L  C+W++    LDLV+Q+F D G M L +P   ++   P +   P    P+ K +L   K   + +K  +EM+SL S   Y++ +AQ L+++ FW P++MDFRGR YPC PH +H+G D++R LL F+ G+ LGP+GLDW+KIHLINL G  K  S   RL  A+EV+ E++DSA NP  GR WW  +++PWQTLA C E+   ++    +  P  + S LP+HQDGSCNGLQHYAALG+D+ GAA+VNL  S+ PQDVY +V   +E  R++DAK G+  A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + L+ L   P + +   + YL +    S+ E+F S   IQ+W  E S+N+       + W TP+   + QPY  +                   +  K + LK KN FPPNFIHSLDS+HMMLTAL C+ K + FVSVHDCFWTHA D+  MN++CRE+FV+LHSQPILE+L+ +L +++    +     +  +    KL   L+++PK GTFD+ +V+ STYFFS
Sbjct:  538 FETTEVPMLCPPLPWTSLH-SGAYLLSS--TKLMRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSEAPRPARYQLPPGSTPVHKSELR--KELARCLKVAREMHSLRSEALYRLSLAQHLRHRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLTGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVR----SPDPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDAKEGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTE-SANLISHAGWPVEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1133

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BLAST of DNA-directed RNA polymerase vs. Ensembl Mouse
Match: Polrmt (polymerase (RNA) mitochondrial (DNA directed) [Source:MGI Symbol;Acc:MGI:1915843])

HSP 1 Score: 321.627 bits (823), Expect = 3.023e-99
Identity = 184/438 (42.01%), Postives = 253/438 (57.76%), Query Frame = 1

Query: 2209 GRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDS-----------------DILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL---LKNIPKKGTFDIREVLDSTYFFS 3462
            GR YPC PH +H+G D++R LL F+ G+ LGP+GLDW+KIHLINL G  K  S   RL  A+EV+ E++DSA NP  GR WW  +++PWQTLA C E+   ++    +  P  + S LP+HQ                                         +E  R++DAK G+  A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + L+ L   P + +   + YL +    S+ E+F S   IQ+W  E S+N+       + W TP+   + QPY  +                   +  K + LK KN FPPNFIHSLDS+HMMLTAL C+ K + FVSVHDCFWTHA D+  MN++CRE+FV+LHSQPILE+L+ +L +++    +     +  +    KL   L+++PK GTFD+ +V+ STYFFS
Sbjct:    2 GRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLTGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVR----SPDPAAYISHLPVHQ-----------------------------------------VEEFRQQDAKEGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTE-SANLISHAGWPVEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 393

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BLAST of DNA-directed RNA polymerase vs. Ensembl Mouse
Match: Polrmt (polymerase (RNA) mitochondrial (DNA directed) [Source:MGI Symbol;Acc:MGI:1915843])

HSP 1 Score: 252.292 bits (643), Expect = 2.214e-69
Identity = 189/697 (27.12%), Postives = 324/697 (46.48%), Query Frame = 1

Query:  583 TYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETCIFS------------SIDELEKFFEVQLNNEILTSVNVDPIHNVTVNP----EILKKVILIEDTWRSSLTEAY-EKKITLLE--YSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQ--KYFAQLKSICLSYYGKLSENPQNIEM--DKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENM----NFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ--PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEK---PAVDLPI-KDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQ 2574
            T+H+   +  ++    Y  +M   A+ G    ++ +   + +  + P++      ++   + +  +   + R +  +       +       + +E+ + +L+A+   EP F      P   N S L +  I+S             +D L+  F  QL+ E+ +SV V  +    V      E  K +  + + W   L     E K T+    Y  +  LYP+L +L    +V  ++QV+  L    E       ++ L + N      RH   +KQ   +  +L      Y   L+ + Q       + WES  +  +++ +       WS  +   +GK L E++ + +    +     G    + PV+Y      + +    LK       + +   +    F   ++PM  PP+P+   H SG + L++  T+++R +         LEQ  P  +    +AL  L  C+W++    LDLV+Q+F D G M L +P   ++   P +   P    P+ K +L   K   + +K  +EM+SL S   Y++ +AQ L+++ FW P++MDFRGR YPC PH +H+G D++R LL F+ G+ LGP+GLDW+KIHLINL G  K  S   RL  A+EV+ E++DSA NP  GR WW  +++PWQTLA C E+   ++    +  P  + S LP+HQ
Sbjct:  220 THHNNGDRQQVLTLHMYNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGRRDQ-DVRTIQRCLKQMMEEGFQPQLLFTDLVLEEEDRAALLRAVVKAEPAFRPPPQAPSPVNTSTLLKD-IYSKEGPVSYPKLHLPLDTLQDLFYQQLHVELSSSVCVQSVEKAPVMSKEVIEARKTLQALREQWEVELLRVLRETKATMGRQAYEGQPTLYPFLCLLSEGEFVSILMQVLKVLPAQGEPLIQLAHNLGLRVLN------RHLVKQKQVTNHVQKLGQRYSQYLQLLASDTQVAPCLPREYWES--LGPLEAPA----QQPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQR-SIPVLYHVYSFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLH-SGAYLLSS--TKLMRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSEAPRPARYQLPPGSTPVHKSELR--KELARCLKVAREMHSLRSEALYRLSLAQHLRHRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLTGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVR----SPDPAAYISHLPVHQ 892

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BLAST of DNA-directed RNA polymerase vs. UniProt/SwissProt
Match: sp|O00411|RPOM_HUMAN (DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens OX=9606 GN=POLRMT PE=1 SV=2)

HSP 1 Score: 507.679 bits (1306), Expect = 2.264e-158
Identity = 336/1014 (33.14%), Postives = 534/1014 (52.66%), Query Frame = 1

Query:  583 TYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETC-----------IFSSIDELEKFFEVQLNNEILTSVNVDPIHNVTVNPEILK----KVILIEDTWRSSLTEAYEKKITLLE---YSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKL------SENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFY---NGITAVTTPVIYEKLE-EDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ--PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLP------IKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFAD-----------------DSDI-LKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
             +H   +K  ++    Y  +M   A+ G    ++ +L  + +  + P++      ++   + +  +   + R +  +    + L+       +++E+ + +LKA+  ++P F++    P   N S L               +   +  L+  FE QL+ E+ + V V  +   T+  + +K     +  + D W  +L  A  +    LE   Y  R  LYP+L +L  +  V  ++QV+  L    E  F  +         + +  F    +++Q+   Q++++   Y   L      +E P+     + WE      + +   + +   W   ++  +GK+L E++ +             ++   PV+Y      +  ++ I     + ++ + KA    L  F  +D+PM  PP+P+   H SG F L+   T+++R         + LE   P  +    +AL  L  C+W++    LDLV+Q+F   G  +L +P   ++   P+ P   LP       K +L    ++ Q V   +EM+SL +   Y++ +AQ L+++ FW P++MDFRGR YPC PH +H+G DV+R LL F+ G+ LGP GLDW+KIHL+NL G  KR+    RL  A EV+ +++DSA  P  GR WW  +E+PWQTLA C E+   ++       P  + S LP+HQDGSCNGLQHYAALG+D+ GAA+VNL  S+ PQDVYS V   +EV R++DA+ G+  A +LEG ++RKV+KQTVMT VYGVT+YGG LQI + L+ L   P + +   + YL +    S+ E+F+    IQ+W  E +  IS +  + + W TP+   V QPY  D                 + DI  K +  K KN FPPNFIHSLDS+HMMLTAL C+ K +TFVSVHDC+WTHA DV  MN++CRE+FV+LHS+PIL++LS +L+++  F   P +     ++   + L+ +PK G FD+ +V  STYFFS
Sbjct:  248 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ-DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGE-SFTTLAR------ELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWE-----ELGAPEALREQ-PWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSSRLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTL-TFEAVDVPMLCPPLPWTSPH-SGAFLLS--PTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSE--APQPPEAHLPHSAAPARKAELRRELAHCQKVA--REMHSLRAEALYRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVR----ASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHM-GSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKR--FCSEPQKILEASQL--KETLQAVPKPGAFDLEQVKRSTYFFS 1230

[Close]

BLAST of DNA-directed RNA polymerase vs. UniProt/SwissProt
Match: sp|Q8BKF1|RPOM_MOUSE (DNA-directed RNA polymerase, mitochondrial OS=Mus musculus OX=10090 GN=Polrmt PE=1 SV=1)

HSP 1 Score: 499.204 bits (1284), Expect = 2.507e-155
Identity = 340/1013 (33.56%), Postives = 528/1013 (52.12%), Query Frame = 1

Query:  583 TYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETCIFS------------SIDELEKFFEVQLNNEILTSVNVDPIHNVTVNP----EILKKVILIEDTWRSSLTEAY-EKKITLLE--YSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQ--KYFAQLKSICLSYYGKLSENPQNIEM--DKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENM----NFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ--PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEK---PAVDLPI-KDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDS-----------------DILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKL---LKNIPKKGTFDIREVLDSTYFFS 3462
            T+H+   +  ++    Y  +M   A+ G    ++ +   + +  + P++      ++   + +  +   + R +  +       +       + +E+ + +L+A+   EP F      P   N S L +  I+S             +D L+  F  QL+ E+ +SV V  +    V      E  K +  + + W   L     E K T+    Y  +  LYP+L +L    +V  ++QV+  L    E       ++ L + N      RH   +KQ   +  +L      Y   L+ + Q       + WES  +  +++ +       WS  +   +GK L E++ + +    +     G    + PV+Y      + +    LK       + +   +    F   ++PM  PP+P+   H SG + L++  T+++R +         LEQ  P  +    +AL  L  C+W++    LDLV+Q+F D G M L +P   ++   P +   P    P+ K +L   K   + +K  +EM+SL S   Y++ +AQ L+++ FW P++MDFRGR YPC PH +H+G D++R LL F+ G+ LGP+GLDW+KIHLINL G  K  S   RL  A+EV+ E++DSA NP  GR WW  +++PWQTLA C E+   ++    +  P  + S LP+HQDGSCNGLQHYAALG+D+ GAA+VNL  S+ PQDVY +V   +E  R++DAK G+  A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + L+ L   P + +   + YL +    S+ E+F S   IQ+W  E S+N+       + W TP+   + QPY  +                   +  K + LK KN FPPNFIHSLDS+HMMLTAL C+ K + FVSVHDCFWTHA D+  MN++CRE+FV+LHSQPILE+L+ +L +++    +     +  +    KL   L+++PK GTFD+ +V+ STYFFS
Sbjct:  220 THHNNGDRQQVLTLHMYNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGRRDQ-DVRTIQRCLKQMMEEGFQPQLLFTDLVLEEEDRAALLRAVVKAEPAFRPPPQAPSPVNTSTLLKD-IYSKEGPVSYPKLHLPLDTLQDLFYQQLHVELSSSVCVQSVEKAPVMSKEVIEARKTLQALREQWEVELLRVLRETKATMGRQAYEGQPTLYPFLCLLSEGEFVSILMQVLKVLPAQGEPLIQLAHNLGLRVLN------RHLVKQKQVTNHVQKLGQRYSQYLQLLASDTQVAPCLPREYWES--LGPLEAPA----QQPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQR-SIPVLYHVYSFRSYRQVGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLH-SGAYLLSS--TKLMRATEGTTQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSEAPRPARYQLPPGSTPVHKSELR--KELARCLKVAREMHSLRSEALYRLSLAQHLRHRVFWLPHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLTGLKKGDSLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVR----SPDPAAYISHLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDAKEGLRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEFVWEASHYLVRQVFKSLQEMFTSTRAIQHWLTE-SANLISHAGWPVEWVTPLGIPIIQPYHRESKVQVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSVHDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVTKLQETLQSLPKTGTFDLGQVIRSTYFFS 1207

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BLAST of DNA-directed RNA polymerase vs. UniProt/SwissProt
Match: sp|O24600|RPOT3_ARATH (DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPOT3 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 4.698e-103
Identity = 228/599 (38.06%), Postives = 336/599 (56.09%), Query Frame = 1

Query: 1738 MPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWK-SYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKP-FWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINL-CGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEE------AILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAA-YLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS--------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            +PM  PP  +    + G+ +L +Y  R        D   D   +     +V+ AL+ L    W++    LD+V +++ D GN+   +  +      PEKP+ + P  ++L SWK S  +  K  +E +SL   +  K+ +A+K+K++  F+YP+++DFRGR YP  PHL+H+  D+ RG L F+ G+ LG  GL W+KIHL NL  G  ++ S+  RL      + +++DSA NP  G+ WW  +E P+Q LA C  + + LK    +  P    S LPIHQDGSCNGLQHYAALG+D+  AAAVNL+  E P DVYS++   +    K+D+    E       A +L   + RK++KQTVMT+VYGVT  G   QI R L+    +  + +   AA Y +K+TL ++GEIF +A  I +W  + +  I+      + W TP+   V QPY   +  ++++              D  K + AFPPNF+HSLD THMM+TA++C E  + F  VHD +WTHACDVD MN+I RE+FV+L++ PILE+L     E Y                 N +   +PK+G FD++EVL S YFF+
Sbjct:  422 VPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHK--TAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIAGLV--NREDVPIPEKPSSEDP--EELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALK----SPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIAS-DNHPVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYP----------------NLVFPPVPKRGDFDLKEVLKSQYFFN 993

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BLAST of DNA-directed RNA polymerase vs. UniProt/SwissProt
Match: sp|Q8L6J3|RPO2B_TOBAC (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPOT2-TOM PE=2 SV=2)

HSP 1 Score: 340.117 bits (871), Expect = 2.310e-98
Identity = 263/800 (32.88%), Postives = 406/800 (50.75%), Query Frame = 1

Query: 1198 YLSVLPTKSY-VDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFR-HRCLKKQKYFAQLKSICLSYYGKLSENPQNI--EMDKLWE--SSIMENID---SGSIVH---DTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTI-------FKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAV-DLPIKDKLNSWKSYFQFVK-EQKEMYSLWSTLSYKIMIAQKLKNKP-FWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINL-CGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEH-LEVKRKEDAKNGVE--EAILLEGLLS---RKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQN-IKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSD--------------CLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLL-KNIPKKGTFDIREVLDSTYFFS 3462
            YL  LP     V  M +++  L T  +    R+    L IG+ I    R H  L+K K     K        K  E+ +++  E +KL +  +++M+       G IV    D+  W +  KA +G  L E++ +           AV  P I          V    K  S+   I       FK + +         MPM  PPV +    + G  YL +Y  R        +         + +  V+ AL+ L    W+I    L ++ +++  +G  +L      +    PE+P   D  ++ K   W+   + VK E +E +S    +  K+ +A+K+K++  F+YP+++DFRGR YP  PHL+H+G D+ RG+L F+ G+ LG  GL W+KIHL NL  G  ++ S   R+      + ++ DSA  P +GR WW  +E P+Q LA C  + + ++    +  P+   S +P+HQDGSCNGLQHYAALG+D  GAAAVNL+  E P DVYS +    L++ +++  ++  E  +A+    L++   RK++KQTVMT+VYGVT  G   QI R LK    +   + +   A Y +K+TL ++GE+F +A +I  W  E +  I+      + W TP+   V QPY      ++K+                 + + AFPPNFIHSLD +HMM+TA++C    + F  VHD +WTHACDVD++N+I RE+FV+L+  PILE     LLE +Q              ++  LL   +P++G FD+R+VL+S YFF+
Sbjct:  258 YLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKD-------KQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKR--ASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIW--AGGGRLADLVDRDDAPLPEEPDTEDEALRTK---WRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVR----SSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIAS-ENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEK----LLESFQ-------------TSYPTLLFPPLPERGDFDLRDVLESPYFFN 1021

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BLAST of DNA-directed RNA polymerase vs. UniProt/SwissProt
Match: sp|Q8VWF8|RPOT2_NICSY (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPOT2 PE=2 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 1.355e-97
Identity = 238/696 (34.20%), Postives = 359/696 (51.58%), Query Frame = 1

Query: 1483 GSIVH---DTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTI-------FKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAV-DLPIKDKLNSWKSYFQFVK-EQKEMYSLWSTLSYKIMIAQKLKNK-PFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINL-CGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEE------AILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQN-IKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSD--------------CLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLL-KNIPKKGTFDIREVLDSTYFFS 3462
            G IV    D+  W +  +A +G  L +++ +           AV  P I          V    K  S+   I       FK + +         MPM  PPV +    + G  YL +Y  R        +         + +  V+ AL+ L    W+I    L +V +++  +G  +L      +    PE+P   D  ++ K   W+   + VK E +E +S    +  K+ +A+K+K++  F+YP+++DFRGR YP  PHL+H+G D+ RG+L F+ G+ LG  GL W+KIHL NL  G  ++ S   R+      + ++ DS+  P +GR WW  +E P+Q LA C  + + ++    +  P+   S +P+HQDGSCNGLQHYAALG+D  GAAAVNL+  E P DVYS +   +    K DA+    E      A +L   + RK++KQTVMT+VYGVT  G   QI R LK    +   + +   A Y +K+TL ++GE+F +A +I  W  E +  I+      + W TP+   V QPY      ++K+                 + + AFPPNFIHSLD +HMM+TA++C    + F  VHD +WTHACDVD++N+I RE+FV+L+  PILE     LLE +Q              ++  LL   +P++G FD+R+VL+S YFF+
Sbjct:  354 GQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKR--ASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIW--AGGGRLADLVDRDDAPLPEEPDTEDEALRTK---WRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVR----SSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIAS-ENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEK----LLESFQ-------------TSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020

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BLAST of DNA-directed RNA polymerase vs. TrEMBL
Match: A0A087VZB8 (DNA-directed RNA polymerase OS=Echinococcus multilocularis OX=6211 GN=EmuJ_000150100 PE=3 SV=1)

HSP 1 Score: 605.134 bits (1559), Expect = 0.000e+0
Identity = 415/1236 (33.58%), Postives = 620/1236 (50.16%), Query Frame = 1

Query:  244 VPNLFQKPTEEISKPIDMKYV---NIIEEINQLKTEEFLPKKLEEAINITSLKLLKFFPHYK------HQKVKELNNVSALRFIKSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEA---------------ASKNELLNTEFLH----------RMMGYVKCHNISLEKAILKAPITKENFSHILKALQMI----EPNFNIICNKPELKNKSALKETC--------------------IFSSIDELEKFFEVQLNNEILTSVNVDPI-----HNVTVNPEILKKVI--------------------LIEDT-WRSSLTEAYEKKITLLEYS-DRSKL--YPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFA----QLKSICLSYYGKLSENPQNIE-MDKLWESSIMENIDSG-SIVHDTIDWSKKIKASIGKILYEIMFENMNFTF-------YNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALP-GFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFD----DDLE-QPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFN-GPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLE--KLPP-----QNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYF-------------------------------------------ADDS--DILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINP----NENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            +P+   K   E S+    KYV   +++E+IN +      P +L   +   S   L F    K          KELN++     +  + +N ++ A Y D C+Q  +  + L    + R E+    +++K ++I+    Y  I +  A      A+   L  + E  I P  +I   ++E                 S N  L TE  H           ++     + I++ + +L+ P   ++   IL AL  +    EP+   +  +         +ET                     +F S   + + F+ Q++ EI+  V V P+       +   PEI K  I                      ++T WR  LTEA+E  +  L+ +  R ++  YP+L +LP KSYVD MIQ +  + TD+ LQ        L +G  +       C+  +K  A    ++     +Y    + + +N+E   ++W  ++  N +SG S+  +   W+  I  ++G  LY I+++N+ F          + +      V++E   ++ G+    +++   L   + A +++ P  F+  ++PM  PP+P+  +  +G+   ++ ATR IRK   F   D    DDL+     I  V+++LN LS C WK+    LD ++QV    G+  L IP + + F   P K    L  ++++ +++      K   E  SLW+T  Y++ IA   ++K FW+P+SMDFRGRVYPC PH  H+G DV+RGL+ F+ G  LG +GL W+KIHL NL G  KR SN +R    + ++ E++DSA  PFDGR WW+  E+PWQTLA CRE+   L+   S   P  + S  P+HQDGSCNGLQHYAA+G+D +GAA+V+L   E P+DVYSDV E +E +R+ DA  G E AI LEG + R+VIKQ+VMTTVYGVT YG T QI R+L+ L   + P      + +   +AYL++LTL SIG IF+S+T  Q WF +L+ +I+R R   ISW TP+   V QPY                                            A DS   +   D +K +NAFPPNFIHSLDS HMMLTAL C    + F SVHDCFWTHA  VD++N+ICREEFV LHS+ +LENLSDYL EK+++         E      + FN LLK  PK+G FD+ +VL STYFFS
Sbjct:    1 MPDAMVKDVPESSQRNRSKYVTASSLLEQINAVPRARLFPSQLRLILKYQSFLSLNFLESCKTVVSEADTDCKELNSI-----LGRIYFNNDSFAAYTDACLQTAEKFQMLRSLINRRKESRIEENLEKGNVILSDSLYSLICRYFASRDDWLALERSLTWLREDGIPPTFNICVASLECLGGLLHRSIHGKSLPKSLNHKLTTEHRHIHSYVEEKALEIIALADKYGINVYEDLLRYPRQTQSLEKILTALFFVTPDREPSLTFLAAQSTTLRTYKTRETTKRVSSVLDKTPLSPANIFADVFPSSQAMVEAFQEQMHLEIMGQVPVSPVLPFFEEMLKQAPEIAKTAIHSSHQLRHRFRSAELRQSLEAEQNTHWRRQLTEAFEATLQRLKVAHARGQITAYPFLKILPKKSYVDLMIQAINTIVTDTALQHVSRSLFLLRLGERVEAA----CVVWRKQNAGILEEMAKAYKTYADMFTSSTRNVEHFREMWFRALQVNAESGASLDQEWPKWNSHILLTVGHELYRILYDNLTFNINALRSRDASKVGRQEANVLFEVSSDNPGEARYEIRVHPTLLKWYSASDRSSPLMFNPTELPMLCPPLPWIDSKHAGYLLSSSAATRFIRKPNYFPGGDASANDDLDFDISTIPSVFDSLNALSACPWKVNKPILDAMLQVARGGGDKSLSIPETKSLFPIPPRKFDSTLTREERIAAYRQAHNIRKVHDETRSLWATEMYRLSIANHYRDKVFWFPHSMDFRGRVYPCPPHFHHMGSDVARGLIVFAKGLPLGERGLRWLKIHLANLTGNVKRSSNDEREAYTDSILDEIVDSADRPFDGRGWWREQEEPWQTLACCRELTAALRHPTS---PSTYVSYFPVHQDGSCNGLQHYAAMGRDERGAASVSLEDCERPRDVYSDVTEVVEARRRADAAEGNEAAIALEGAVQRRVIKQSVMTTVYGVTLYGATAQIRRQLRELPIFQTPAGADADRRLGPASAYLARLTLSSIGAIFSSSTATQAWFAKLARHITRCRGCRISWITPLGLPVVQPYVKQANFELNLWSGELTNAAASTTAWATALTKAARCAEQQFRRGGARDSLVGLPLPDPVKQQNAFPPNFIHSLDSCHMMLTALHCLRAGVMFASVHDCFWTHAASVDQLNRICREEFVALHSENVLENLSDYLREKFEYSQAELEKLPEKKRDEAVNFNNLLKQFPKRGNFDLSKVLTSTYFFS 1224

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BLAST of DNA-directed RNA polymerase vs. TrEMBL
Match: A0A3Q0KPI7 (DNA-directed RNA polymerase OS=Schistosoma mansoni OX=6183 PE=3 SV=1)

HSP 1 Score: 585.489 bits (1508), Expect = 0.000e+0
Identity = 392/1133 (34.60%), Postives = 583/1133 (51.46%), Query Frame = 1

Query:  499 ATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIE--------------------AASKNELLN-------------TEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICN---------------------KPELKNKSALKE------TCIFSSIDELEKFFEVQLNNEILTSVNVDPI-------HNVTVNPEILKKV--ILIEDT--WRSSLTEAYE---KKITLLEYSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIE-MDKLWESSIMENIDSG-SIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVT------------------TPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIR-------KSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDL----PIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYF--------ADDS----------------DILKSDCLKNK-----------NAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQF---QINPNENDNGRK--IAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            A ++D  I  G+    L   +SV  E++T     +  II  S+ YE +    AK G     I LL  +    +LP+ +  F   E                    + SKN+  N                +  ++   +     L + +L   + + +  +IL AL  + PN N   N                      P  K+  ++K         IF+   ++ K F+ Q++ E +T V V P+           + PE+ K +   LI++   W   L  A+    K++ ++    +   YP+L +LP  +Y D MI  +  L  DS LQ+       L +G  +         +K  YF QL+ + ++Y    +E          +W  ++   +D G +  H+   W   I   IG++LY +++E++ F   NG   V                   TP I+E L E   +V   +K+   L   ++  +     F    +PM  PPVP+    ++G+    NYATR+IR        ST  D  D D +Q   I  V +ALN L+ C WKI N  LD ++QV    GN  L IP   +K   P++  VDL      K++  +++ Y    ++  E  SLWST  Y++ IA + ++K  W+P+SMDFRGRVYPC PH +H G DV+R L+ F+ G  LGP GLDW+KIHL+NL G  KR ++S+RL+ A+ +++++IDSA  PFDGR WWQ   +PWQ LA C E+   L        P+ + S  P+HQDGSCNGLQHYAALG+D +GA +VNL     PQD+YSDV+E +E +R+ DA  G   A  LEG + RKVIKQ++MTTVYGVT YG T QI ++L++L   P +++   + YL++LTL SI ++F S+ +IQNW  +++  IS   +  +SW+TP+   V QPY         +DD                 D++K D + +K           +AFPPNFIHSLDS HMMLT L C ++ I F SVHDCFWTHA  VD++N+ICREEF+ LHSQPIL + +DY+ +++ +   QIN  +N   R+  +AFN+LL N+PK+G+FD+ EV+ + YFFS
Sbjct:  142 AGFLDSSIASGEVFNFLRFCDSVFKESQTAKGFRRGHIIQTSMVYEKLANYYAKCGDWSGYIKLLERIKREGLLPSKNTYFYGFECLGKLMNKDGSQFPPSSHPQSISKNKAFNRLTPKSVIPMEKIGHEVENLIDAAEEEGHDLTQGLLGLSLEEGSLKNILTALLYVRPNINPNLNYFMHYSSSNISTHTKRTKEISHPAQKHLDSVKHERKNPYAGIFTDFGDISKAFKSQMHVEKMTEVTVSPVLSPFGQSETAPLTPELKKNLHNALIKERKHWHQVLLTAFNEQLKRLKIIHAKGKLTAYPFLKILPASNYADLMITGIDMLIVDSALQYTSSSIACLQLGRRVERACTVYRQEKIGYFKQLEKMYMTYATLFNEREMKFSNFRHMWLYALQSRMDQGPNTQHNWTSWPPTILFMIGEVLYSLIYEHLRFDL-NGPLRVRHEFSKSDEKASSNVRRKDTPAIFEVLAEFPTEVTNEIKVHPTLINWYRDADYPPLSFHPCALPMLCPPVPWTNLDDAGYLISRNYATRLIRCTSVSSTNSTYHDDLDFDFKQ---IPSVLDALNCLASCPWKINNTILDYLIQVARSGGNENLSIPEWRSK---PKR--VDLRNNMTAKERRLAYRKYHSDRQDYGEFCSLWSTELYRLSIANQYRDKIIWFPHSMDFRGRVYPCPPHFNHTGSDVARSLIVFAKGLPLGPNGLDWLKIHLVNLTGLKKRCTHSERLEYADSIMNDIIDSAEKPFDGRRWWQNQAEPWQILACCMELKNALSHPSG---PESYVSHFPVHQDGSCNGLQHYAALGRDLRGAKSVNLTSMNCPQDLYSDVVEIVEEQRRIDADGGNSIAKTLEGFVRRKVIKQSIMTTVYGVTSYGATEQIRKQLRDLPDFPKESLLPASRYLARLTLNSIEKVFTSSVDIQNWLCKIAKYISGDFQHRVSWQTPLGLPVIQPYIQSNKSSTDSDDYTVNFYSQLIDNNQKQIDLIKKDKIGDKLISLPKSSKQTSAFPPNFIHSLDSCHMMLTGLQCLKEGIVFASVHDCFWTHAATVDKLNRICREEFIALHSQPILSDFADYVKQRFGYTDKQINEFKNGKKREQALAFNRLLSNLPKRGSFDLSEVMKAEYFFS 1262

[Close]

BLAST of DNA-directed RNA polymerase vs. TrEMBL
Match: A0A0X3P3U9 (DNA-directed RNA polymerase (Fragment) OS=Schistocephalus solidus OX=70667 GN=RPOM PE=3 SV=1)

HSP 1 Score: 585.104 bits (1507), Expect = 0.000e+0
Identity = 395/1211 (32.62%), Postives = 616/1211 (50.87%), Query Frame = 1

Query:  283 KPIDMKYVN---IIEEINQLKTEEFLPKKLEEAINITSLKLLKFFPH---YKHQKVKELNNVSALRFIKSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASK--------------NELLNTEFLHR----MMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPN-FNIICNKP--------------------ELKNKSALKETC---IFSSIDELEKFFEVQLNNEILTSVNVDPIHNV------------------TVNP----EILKKVILIEDTWRSSLTEAYEKKITLLEYS---DRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSY--YGKLSENPQN--IEMDKLWESSIMENIDSGSIVHDTI-DWSKKIKASIGKILYEIMFENMNFTFYNGITAVTT--------------PVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFD----DDLEQPDDISKVY---NALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIP-TSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGK---PDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQN-IKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPY--------------------------------FADDSDILKS-----------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINP----NENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            +P D++ ++   ++ EIN +      P + +      S  + +F        H   K+LN + A  ++K+     ++ A Y+D C+Q  +  +AL   NS R E+    +V + S +   + +E + +  A      +I  +L  + +  + P+ + +  ++E                   + L   +L R    ++   + +NISL + +L  P  K +  +IL AL  ++P  +  +  +P                     LK+ +  KE     +F+    +   F+ QL  E+  +V+V P+ +                   +V+P     I K ++L +  W   L +A+E  +  L+ +    +   YP+L ++P ++YVD +I+ V  + TDSELQ      + + +G  +        + +++    +  + L+Y  Y  L  +P+     + + W  ++    + G  ++     W+  I+  +G+ LY I+++++ F   NG+    +              PV++E   ++  +    +++   L   ++ +      F   ++PM  PP+P+   + +G+   ++ ATR+IR+   F   D    DDL+   D SKV    +ALN L+ C WK+ N  LD ++QV    G+ +L IP T +      ++ A DLP +++  +++  +   K   E  SLW+T  Y++ IA + ++K FW+P+SMDFRGRVYPC PH  H+G DV+RGL+ F+ G  LG  GL W+K HL NL G  KR +N +R+   ++ + EV DSA  PFDGR WW+  E+PWQTLA CRE+   L+          P D+ S  P+HQDGSCNGLQHYAA+G+D +GA +V+L   E P+DVY DV E +E +R  DA  G+  A  LEG + RKVIKQ+VMTTVYGVT YG   QI R+LK + + P +  +   +AYL++LTL SI  IF S++  Q WF  LS +I++     ISW TP+   V QPY                                 A+ S   K            + LK KNAFPPNFIHSLDS HMMLTAL C+ + I F SVHDCFWTHA  VD MN+ICREEFV LHS+P+LENLSDYL  K+++         E        FNKLL+  PK+G FDI++VL STYFFS
Sbjct:   58 RPQDVQDISPCLLLSEINAIPDVRLFPSQKKLVSKFKSFLVNRFVSESVETTHDNYKDLNEILAKIYLKN-----DSLAAYVDACLQTAEVNQALKSLNSRREESRLIENVFRGSFVQADIIFELLCRHFALKSDWLSIEKVLLWLKDDGLTPSFTTLLASLECLGALLQGTRQGKKINHAGDQLLQPYLERKITEVLSLAEDNNISLYEGLLSYPRMKNSLKNILTALLYVQPGRYPHLSFQPFRPSTITDAQSQKITDRVSATLKSSTVSKENLYADVFADEKAMMNAFQAQLKLEMAGTVSVAPVLSFFEDMCKTPKGTIAATAQKSVSPVKARAIHKNLMLEQSIWSKQLMKAFEATLQRLKSAHAHGQITAYPFLKIMPRRAYVDLLIRTVNSIITDSELQHVSRSLLLVRLGERVEAAC---AVWRKQNLGIVDELKLTYEVYAGLFTSPERKAASVREAWLRALQVRSEDGICLNPQWPQWNSHIRLMVGQELYRILYDHLTFNL-NGVRLSASLPSDKEVLPPRQEAPVLFEVSSDNPAETRCEIRVHPTLLKWYRLVGHMPLQFEVTELPMLCPPIPWIDTNRAGYLLASSDATRLIRRPNYFYGTDAAANDDLDF--DASKVLLVLDALNALASCPWKVNNPILDALIQVARSGGDARLSIPETKSLPPLKSKRIARDLPREERAKAYRESYNIRKTHDETRSLWATEMYRLSIANQYRDKVFWFPHSMDFRGRVYPCPPHFHHMGSDVARGLIVFAKGLPLGENGLRWLKTHLANLSGRVKRSANFERVAFTDKYLDEVFDSADKPFDGRGWWREQEEPWQTLACCRELASALRHRNPRTGELDPADYVSFFPVHQDGSCNGLQHYAAMGRDERGAVSVSLRDCERPRDVYGDVTEVVESQRAVDAAAGMPVAQALEGFVQRKVIKQSVMTTVYGVTLYGAMSQIRRQLKEIPEFPRERWLGPASAYLARLTLASISAIFTSSSETQAWFGRLSRHITKDLSCRISWVTPLGLPVVQPYVKSAHRGLEVDFWSGSSQRQLLDYSALTRAAALAEKSRTWKGAKDSLVSLPAPNPLKQKNAFPPNFIHSLDSCHMMLTALHCFREGILFASVHDCFWTHAASVDRMNRICREEFVALHSEPLLENLSDYLRSKFEYSQTELSRLPEEKRASAEDFNKLLRQFPKRGNFDIKDVLTSTYFFS 1257

[Close]

BLAST of DNA-directed RNA polymerase vs. TrEMBL
Match: A0A068WX42 (DNA-directed RNA polymerase OS=Echinococcus granulosus OX=6210 GN=EgrG_000150100 PE=3 SV=1)

HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0
Identity = 401/1223 (32.79%), Postives = 608/1223 (49.71%), Query Frame = 1

Query:  244 VPNLFQKPTEEISKPIDMKYV---NIIEEINQLKTEEFLPKKLEEAINITSLKLLKFFPHYK------HQKVKELNNVSALRFIKSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEA---------------ASKNELLNTEFLH----------RMMGYVKCHNISLEKAILKAPITKENFSHILKALQMI----EPNFNIICNKPELKNKSALKETC--------------------IFSSIDELEKFFEVQLNNEILTSVNVDPI-----HNVTVNPEILKKVI--------------------LIEDT-WRSSLTEAYEKKITLLEYS-DRSKL--YPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFA----QLKSICLSYYGKLSENPQNIE-MDKLWESSIMENIDSG-SIVHDTIDWSKKIKASIGKILYEIMFENMNFTF-------YNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALP-GFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFD----DDLE-QPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFN-GPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKL-------PPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYF-------------------------------------------ADDS--DILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINP----NENDNGRKIAFNKLLKNIPKKGTF 3423
            +P+   K   E  +    KYV   +++E+IN +      P +L   +   S   L F    K          KEL+++     +  + +N ++ A Y D C+Q  +  + L    + R E+    +++K ++I+    YE I +  A      A+   L  + E  I P  +I   ++E                 S N  L TE  H           ++   + + I++ + +L+ P   ++   IL AL  +    EP+ + +  +         +ET                     +F S   + + F+ Q++ EI+  V V P+       +   PEI K  I                      ++T WR  LTEA+E  +  L+ +  R ++  YP+L +LP KSYVD MIQ +  + TD+ LQ        L +G  +       C+  +K  A    ++     +Y    + + +N+E   ++W  ++  N +SG S+  +   W+  I  ++G  LY I+++N+ F          + +      V++E   ++ G+    +++   L   + A +++ P  F+  ++PM  PP+P+     +G+   ++ ATR IRK   F   D    DDL+     I  V+++LN L+ C WK+    LD ++QV    G+  L+IP + + F   P K    L  ++++ +++      K   E  SLW+T  Y++ IA   ++K FW+P+SMDFRGRVYPC PH  H+G DV+RGL+ F+ G  LG +GL W+KIHL NL G  KR SN +R    + ++ E++DSA  PFDGR WW+  E+PWQTLA CRE+   L+   S   P  + +  P+HQDGSCNGLQHYAA+G+D +GAA+V+L   E P+DVYSDV E +E +R+ DA  G E AI LEG + R+VIKQ+VMTTVYGVT YG   QI R+L+ L            + +   +AYL++LTL SIG IF+S+T  Q WF +L+ +I+R R   ISW TP+   V QPY                                            A DS   +   D +K +NAFPPNFIHSLDS HMMLTAL C    + F SVHDCFWTHA  VD++N+ICREEFV LHS+ +LENLSDYL EK+++         E      + FN LLK  PK+G F
Sbjct:    1 MPDAMVKDVPESLQRYRSKYVTASSLLEQINAVPRARLFPSQLRLILKYQSFLSLNFLESCKTVVSEADTDCKELSSI-----LGRIYFNNDSFAAYTDACLQTAEKFQMLRSLINRRKESRIEENLEKGNVILSDSLYELICRYFASRDDWLALERSLTWLREDGIPPTFNICIASLECLGGLLHRSIHGKSLPKSLNHKLTTEHRHIHSYVEEKSLEIIALAEKYGINVYEDLLRYPRQTQSLEKILTALFFVTPDREPSLSFLAPQSTTLRTYKTRETTKRVSTVLDKTPLSPVNIFADVFPSSQAMVEAFQEQMHLEIMGQVPVSPVLPFFEEMLKEAPEIAKTAIHSSHQLRHRFRPAELRQSLEAEQNTHWRRQLTEAFEATLQRLKVAHARGQITAYPFLKILPKKSYVDLMIQAIDTIVTDTALQHVSRSLFLLRLGERVEAA----CVVWRKQNAGILEEMAKAYKTYADMFTSSTRNVEHFREMWFRALQVNAESGASLDQEWPKWNSHILLTVGHELYRILYDNLTFNINALRSRDASKVGRQEANVLFEVSSDNPGEARYEIRVHPTLLKWYSASDRSSPLMFNPTELPMLCPPLPWIDTKHAGYLLSSSAATRFIRKPNYFPGGDASANDDLDFDISTIPSVFDSLNALAACPWKVNKPILDAMLQVARGGGDKSLRIPETKSLFPIPPRKFDSTLTREERMAAYRQAHNIRKVHDETRSLWATEMYRLSIANHYRDKVFWFPHSMDFRGRVYPCPPHFHHMGSDVARGLIVFAKGLPLGERGLRWLKIHLANLTGNVKRSSNDEREAYTDSILDEIVDSADRPFDGRGWWREQEEPWQTLACCRELTAALRHPTS---PSTYVNYFPVHQDGSCNGLQHYAAMGRDERGAASVSLEDCERPRDVYSDVTEVVEARRRADAAEGNEVAIALEGAVQRRVIKQSVMTTVYGVTLYGAMAQIRRQLRELPTFQTPAGADADRRLGPASAYLARLTLSSIGAIFSSSTATQAWFAKLAKHITRCRGCRISWITPLGLPVVQPYVNQADFELNLWSGELSNAAASTTAWATALTKAARRAEQQFRRGGARDSLVGLPLPDPVKQQNAFPPNFIHSLDSCHMMLTALHCLRAGVMFASVHDCFWTHAASVDQLNRICREEFVALHSENVLENLSDYLREKFEYSQAELEKLPEKKRDEAVNFNNLLKQFPKRGKF 1211

[Close]

BLAST of DNA-directed RNA polymerase vs. TrEMBL
Match: A0A4Z2DVV8 (DNA-directed RNA polymerase OS=Schistosoma japonicum OX=6182 GN=EWB00_003926 PE=3 SV=1)

HSP 1 Score: 573.548 bits (1477), Expect = 0.000e+0
Identity = 356/907 (39.25%), Postives = 514/907 (56.67%), Query Frame = 1

Query:  979 FSSIDELEKFFEVQLNNEILTSVNVDPI-------HNVTVNPEI---LKKVILIEDT-WRSSLTEAYEKKITLLEYSD-RSKL--YPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNI-EMDKLWESSIMENIDSG-SIVHDTIDWSKKIKASIGKILYEIMFENMNF-----------------TFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIF---DIFDDDLE-QPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS---------------------DCLKN----------------KNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQF---QINPNENDNGRK--IAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            F+S D++ K F+ QL  E +  V + P+          ++ PE+   L   ++ E + WR +L  A+ +++  L+ +  R KL  YP+L +LP  +YVD MI  +  L  DS LQ+       L +G  +         +K  YF QL+ I ++Y    +E+   +     +W  S+  +ID G +  H    W   I   IG++LY +++E++ F                 T  N I    TP I+E L E   +V   +K+   L   ++        F    +PM  PP+P+    ++G+    NY+TR+IR S+I     I+ DDL+     I  V +ALN L+ C WKI N+ LD ++ V    GN  L IP   +K    E    D+  K++  ++K YF+  ++  E  SLWST  Y++ IA + ++K  W+P+SMDFRGRVYPC PH +H G DV+R L+ F+ G  LG  G DW+KIHL+NL G  KR ++S+RL+ AN +++++IDSA  PFDGR WWQ   +PWQ LA C EI   L  +   G P+ + S  P+HQDGSCNGLQHYAALG+D +GA +VNL   + PQD+YSDV+E +E +R+ DA  G   A  L+G + RKVIKQ++MTTVYGVT YG T QI R+L++L   P  ++   + YL++LTL SIG++F S+ +IQNW  E++  IS      +SW+TP+   V QPY   +   +                       D LKN                 +AFPPNFIHSLDS HM+LT L C ++ I F SVHDCFWTHA  VD++N+ICREEF+ LHSQPIL + +DY+  K+ +   +IN  +N   R+  +A N+LL ++PKKG+FD+ EV+ STYFFS
Sbjct:  106 FTSSDDISKAFKNQLYLEQMLEVPISPVLSPFGQSETTSLPPELKISLHNALVKEQSHWRKTLLIAFNEQLKRLKLTHARGKLTAYPFLKILPASNYVDLMITGIDMLIVDSALQYTSSSFACLQLGRRVERACTVYRQEKSGYFKQLERIYMTYATLFNEHEMKLLNFRHMWLYSLQSHIDQGPNTNHSWTSWPPSILFMIGEVLYNLIYEHLRFDLNGPLKVRHEFLKHDNTISNNIRRQDTPAIFEVLTEFPTEVTNEIKVHPTLINWYRDAGYPPLSFHPCALPMLCPPIPWINLMDAGYLISRNYSTRLIRSSSISSTNPIYSDDLDFDYKQIPSVLDALNCLASCPWKINNSILDYLIHVARSGGNENLSIPEWRSKPKRVEL-KTDMTRKERQLAYKKYFEDRQDYGEFCSLWSTELYRLSIANQYRDKTIWFPHSMDFRGRVYPCPPHFNHTGSDVARSLIVFAKGLPLGSNGFDWLKIHLVNLTGLKKRSTHSERLEYANSIMNDIIDSAEKPFDGRRWWQDQAEPWQILACCIEIKNAL--LHPCG-PESYVSHFPVHQDGSCNGLQHYAALGRDLRGAKSVNLTDMDRPQDLYSDVVEIVEDQRRIDADGGNTIAKALDGYVRRKVIKQSIMTTVYGVTPYGATEQIRRQLRDLPDFPKDSLLPASRYLARLTLNSIGKVFTSSVDIQNWLCEIAKYISGDLHCRVSWQTPLGLPVIQPYMESNKSYMSDPDDYAVNVYGQPNHNINQAQLDLLKNYKQNVNSISLPKSSKQTSAFPPNFIHSLDSCHMILTGLQCLKEGIMFASVHDCFWTHAATVDKLNRICREEFIALHSQPILGDFADYVKNKFAYTEKEINEFKNPKKREQALALNRLLSSLPKKGSFDLSEVMKSTYFFS 1008

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Cavefish
Match: polrmt (RNA polymerase mitochondrial [Source:NCBI gene;Acc:103025872])

HSP 1 Score: 520.39 bits (1339), Expect = 1.758e-163
Identity = 363/1047 (34.67%), Postives = 562/1047 (53.68%), Query Frame = 1

Query:  505 YMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNF-------NIICNKPELKNKSALKETCIFSSID----ELEKFFEVQLNNEILTSVNVD---PIHNVTVNPEILKKVILIE-DTWRSSLTEAYEKKITLLEYSD----RSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQ-KYFAQLKSICLSYYGKLSENPQ--NIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFT---FYNGITAVTTPVIYE----KLEEDAGKVF---ITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLE--QPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVD-----LPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPD--DFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNK---LLKNIPKKGTFDIREVLDSTYFFS 3462
            Y++ C+  GD E+A   F  + + N     + K+S++    FY  +MK+ AK G +  I  L   + E  + P+       +E   +    +T  + R +  +K   + ++    +     +    +LKA++  +P++       +  C+   +K+  A +E   F  +D    EL++ F+ QL  E   ++ +D    I  VT N   ++K++ ++   W+ SL +A  +   +L+       ++ LYP L VL  + YV  M+Q +  L    +   N  +     +G+ + + F   C++++ +   ++  I  SY   L+++ +  N+   + W     E     S++     W   +   +G  L  ++   +          +     P++Y     +     G +    I +KIQS   T+ K        F    MPM  PP+P+  + +SG + LT   T+++R     +     LE  Q +D+  V ++LN L  C+WKI    LD+++ +FND G  KL IP    +   PE P  +       I++K +  +   +  K+  EM+SL     YK+ IA  ++++ FW+P++MDFRGR YPC P+L+H+G D++R +L F+ GK LGP GLDW+KIHL+NL G  KR S + RL+ AN ++ +++DSA NP  GR WW  +++PWQ LA C+EI        ++  PD  +F S  P+HQDGSCNGLQHYAALG+D  GA +VNL+  E PQDVYS V + +E  RK DA  G++ AI+LEG ++RKV+KQTVMT VYGVT+YGG LQI + LK ++  P + +   + YL +    S+ E+F     IQNW  E +  IS+   + + W TP+   + QPY    S +++S                 D +K KNAFPPNFIHSLDSTHMMLTAL C+   +TFVSVHDCFWTH   VD MNK+CRE+FV LH+QPIL+NLS++LL+KY          N   + FN+   LL  +P+ G FD++ V DSTYFFS
Sbjct:  273 YLEACVYTGDVERA-QRFLLLHHRN-----LSKRSVLTVR-FYNTLMKMWAKKGALPQISKLFVMLAEAELKPDAGSYSAVLECMGRMPESSTNLIERCLEQMKEDGLCVDDVFSQCLFRLDERDMVLKAVRDGKPDYEPPTSAKSPQCSLTLVKDFYAQREDVRFPKMDFELAELQERFKQQLAVEQSNTITIDSVEAIKPVTENMTKMRKLLEVQYGHWQRSLLQALRESKQVLKKGRLRNWKTDLYPLLCVLHDEEYVKIMLQTLENLPPTGDSLVNLAKE----LGSRVYSTF---CIQQKIQMVKKMSHIYNSYAELLAKDTESSNVLPRERWIELEAEMSAGPSLLSVEASWPHMLLVQLGCFLANLLVCELKIPSNILNPELDNKLIPILYHMYIFRNSRQIGFIKPHPILVKIQSDA-TVTKLT------FDSYVMPMLCPPIPW-TSPKSGAYLLT--PTKLMRAVDGANQHQLLLEKCQNEDLHAVLDSLNQLGNCAWKINKPMLDIIISIFNDKGCDKLDIPPPLTE--APEIPRFNPHDQSYTIEEKAHLKQEIMKARKKYGEMHSLRMDALYKLSIANHMRDEIFWFPHNMDFRGRTYPCPPYLNHLGSDMTRCILLFAEGKPLGPTGLDWLKIHLVNLTGLKKRSSLAGRLEYANSIMDDILDSADNPLTGRGWWMSADEPWQCLACCKEI------ASAHRSPDHTEFISCFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCEEPQDVYSGVAQQVEEFRKRDAAKGLKTAIVLEGFINRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKEYLWDASHYLVQQVFSSLKEMFTGTREIQNWLTESARLISK-SGSTVEWVTPLGLPIVQPYHRSRSQLVRSNIQMLNVQISYDVHEKPDTMKQKNAFPPNFIHSLDSTHMMLTALYCYSAGVTFVSVHDCFWTHPITVDTMNKVCREQFVSLHNQPILQNLSEFLLQKYCS--GSVGKTNKAFLEFNRMQQLLARVPETGDFDLQRVKDSTYFFS 1284

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BLAST of DNA-directed RNA polymerase vs. Ensembl Cavefish
Match: polrmt (RNA polymerase mitochondrial [Source:NCBI gene;Acc:103025872])

HSP 1 Score: 479.174 bits (1232), Expect = 6.437e-149
Identity = 275/609 (45.16%), Postives = 380/609 (62.40%), Query Frame = 1

Query: 1723 FSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLE--QPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVD-----LPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPD--DFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNK---LLKNIPKKGTFDIREVLDSTYFFS 3462
            F    MPM  PP+P+  + +SG + LT   T+++R     +     LE  Q +D+  V ++LN L  C+WKI    LD+++ +FND G  KL IP    +   PE P  +       I++K +  +   +  K+  EM+SL     YK+ IA  ++++ FW+P++MDFRGR YPC P+L+H+G D++R +L F+ GK LGP GLDW+KIHL+NL G  KR S + RL+ AN ++ +++DSA NP  GR WW  +++PWQ LA C+EI        ++  PD  +F S  P+HQDGSCNGLQHYAALG+D  GA +VNL+  E PQDVYS V + +E  RK DA  G++ AI+LEG ++RKV+KQTVMT VYGVT+YGG LQI + LK ++  P + +   + YL +    S+ E+F     IQNW  E +  IS+   + + W TP+   + QPY    S +++S                 D +K KNAFPPNFIHSLDSTHMMLTAL C+   +TFVSVHDCFWTH   VD MNK+CRE+FV LH+QPIL+NLS++LL+KY          N   + FN+   LL  +P+ G FD++ V DSTYFFS
Sbjct:  610 FDSYVMPMLCPPIPW-TSPKSGAYLLT--PTKLMRAVDGANQHQLLLEKCQNEDLHAVLDSLNQLGNCAWKINKPMLDIIISIFNDKGCDKLDIPPPLTE--APEIPRFNPHDQSYTIEEKAHLKQEIMKARKKYGEMHSLRMDALYKLSIANHMRDEIFWFPHNMDFRGRTYPCPPYLNHLGSDMTRCILLFAEGKPLGPTGLDWLKIHLVNLTGLKKRSSLAGRLEYANSIMDDILDSADNPLTGRGWWMSADEPWQCLACCKEI------ASAHRSPDHTEFISCFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCEEPQDVYSGVAQQVEEFRKRDAAKGLKTAIVLEGFINRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKEYLWDASHYLVQQVFSSLKEMFTGTREIQNWLTESARLISK-SGSTVEWVTPLGLPIVQPYHRSRSQLVRSNIQMLNVQISYDVHEKPDTMKQKNAFPPNFIHSLDSTHMMLTALYCYSAGVTFVSVHDCFWTHPITVDTMNKVCREQFVSLHNQPILQNLSEFLLQKYCS--GSVGKTNKAFLEFNRMQQLLARVPETGDFDLQRVKDSTYFFS 1204

HSP 2 Score: 63.1586 bits (152), Expect = 1.986e-9
Identity = 62/268 (23.13%), Postives = 123/268 (45.90%), Query Frame = 1

Query:  505 YMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNF-------NIICNKPELKNKSALKETCIFSSID----ELEKFFEVQLNNEILTSVNVD---PIHNVTVNPEILKKVILIE-DTWRSSLTEAYEKKITLLEYSD----RSKLYPYLSVLPTKSYVDAMIQVV 1251
            Y++ C+  GD E+A   F  + + N     + K+S++    FY  +MK+ AK G +  I  L   + E  + P+       +E   +    +T  + R +  +K   + ++    +     +    +LKA++  +P++       +  C+   +K+  A +E   F  +D    EL++ F+ QL  E   ++ +D    I  VT N   ++K++ ++   W+ SL +A  +   +L+       ++ LYP L VL  + YV  M+Q +
Sbjct:  273 YLEACVYTGDVERA-QRFLLLHHRN-----LSKRSVLT-VRFYNTLMKMWAKKGALPQISKLFVMLAEAELKPDAGSYSAVLECMGRMPESSTNLIERCLEQMKEDGLCVDDVFSQCLFRLDERDMVLKAVRDGKPDYEPPTSAKSPQCSLTLVKDFYAQREDVRFPKMDFELAELQERFKQQLAVEQSNTITIDSVEAIKPVTENMTKMRKLLEVQYGHWQRSLLQALRESKQVLKKGRLRNWKTDLYPLLCVLHDEEYVKIMLQTL 533

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BLAST of DNA-directed RNA polymerase vs. Ensembl Sea Lamprey
Match: ENSPMAT00000005603.1 (pep scaffold:Pmarinus_7.0:GL476532:352361:404828:1 gene:ENSPMAG00000005070.1 transcript:ENSPMAT00000005603.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 362.844 bits (930), Expect = 1.295e-109
Identity = 272/896 (30.36%), Postives = 452/896 (50.45%), Query Frame = 1

Query:  505 YMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKS------ALKETC--------IFSSIDELEKFFEVQLNNE---ILTSVNVDPIHNVTVNPEILKK---VILIEDTWRSSLTEAY---EKKITLLEYSDRSKL--YPYLSVLPTKSYVDAMIQVVFQL--STDSELQFNRIQHVHLHIGNIISNMFRHRCLKK--QKYFAQLKSICLSYYGKLSENPQNIEM---DKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTT-----PVIYEKLEEDAGKVFITLK---IQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLP----IKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPY 3060
            Y+D C+  G+ ++A       +     YH       ++    Y+ +M   AK   +  I  L + + E  + P++      +E   +   +    + R +  ++ + + L++        ++    +L A++ + P++  +   P L          AL   C        +  + +EL++ F  Q++ E   I+T  +V+ +  VT  PE+ KK   +  +   WR++L +A+   +KK+    +    KL  YPY  +L  + YV+A    +  L  + DS +  +R      ++G  + NM+   C++K  + + AQ  S     Y +L  +   +      + WE    E  D   +  +T++W+  +  ++G  L +IM   +      G T +       P +Y      + +    +K   + ++L++  +A+   L  F    +P + PP+P+      G+  +     R +  +T      D  ++   +    + LN L  CSW I    LD+V+ +FND G  KL IP   ++   P+ P  D      I D+L   ++     K   EM+SL  +  YK+ IA  ++ + FW+P++MDFRGR YPC PH +H+G D+SR LL F+ G+ LG +GLDWIKIHL+NL GT K+ S  +R   A+E + +++DSA  P  GR WW  +++PWQ LA C EI + ++    +  P ++ S  P HQDGSCNGLQHYAALG+D  GAA+VNL   + PQDVY+ V + ++V R EDAKN V+ A +L G + RK++KQTVMT VYGVT+YGG  QI + L  ++  P + +   +AYL+KL   S+ E+F     IQNW  E +  I+R  + ++ W TP+   + QPY
Sbjct:    8 YLDACLFSGELKRA-------QKYVWHYHQDPNLRSLLSVQIYDVMMGAWAKKKFLFKIAKLFSMVGEAGLKPSLVSYAAALECMGRVPNIAQSVVARCLEEMQQNGLELDQLFAHCNFVEDEREVVLAAVRRVRPDYAPMAMPPRLVAPLSVVPLLALSYPCDNSGNYPRLKQTTEELKQGFRRQMDLEKAHIVTIQSVEALKPVT--PEMEKKRQALTELHKEWRATLLQAFAEGKKKLMSRRFGSSFKLDLYPYTCLLTDEEYVNAHAGGLNSLPPNGDSVMSLSR------NLGRKVFNMY---CIRKKMRNHVAQRISKVYDAYCELLASDGKVSGFLPRQFWERVEAEVADGYRLSGETVEWTLPVTVTLGSYLLDIMVRELKVYSGTGSTDLVRGTKPIPALYHVYAFRSVRQIGFVKPHPLVTQLQS--RAVETEL-HFDVQALPTSCPPLPWTSPRFGGYVLIPTTLMRSVDMATQHQNLLDLCQEARRLHAAMDVLNQLGTCSWIINEPLLDIVIGIFNDRGCDKLDIPPPLSE--APKVPRYDPTGQNGIADRLAFRRALTHARKTTSEMHSLRMSALYKLSIANAMRGRVFWFPHNMDFRGRTYPCPPHFNHLGSDMSRALLLFAEGRPLGERGLDWIKIHLVNLTGTKKKSSLLERRMFADEKMDDILDSADRPLTGRQWWMEADEPWQVLACCMEIARAVR----SPDPKEYISHFPTHQDGSCNGLQHYAALGRDTIGAASVNLKPLDMPQDVYASVAQQVDVFRAEDAKNDVKIAQVLGGFIGRKLVKQTVMTVVYGVTRYGGRQQIEKRLSEMDDFPKEYVWDASAYLTKLVFSSLREMFTGTREIQNWLTESARMIARAGQ-SVEWVTPLGLPIIQPY 875

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BLAST of DNA-directed RNA polymerase vs. Ensembl Yeast
Match: RPO41 (Mitochondrial RNA polymerase; single subunit enzyme similar to those of T3 and T7 bacteriophages; requires a specificity subunit encoded by MTF1 for promoter recognition; Mtf1p interacts with and stabilizes the Rpo41p-promoter complex, enhancing DNA bending and melting to facilitate pre-initiation open complex formation; Rpo41p also synthesizes RNA primers for mitochondrial DNA replication [Source:SGD;Acc:S000001858])

HSP 1 Score: 338.576 bits (867), Expect = 7.396e-98
Identity = 253/786 (32.19%), Postives = 394/786 (50.13%), Query Frame = 1

Query: 1123 RSSLTEAYEKKITLLEY-SDRSKLYPYLSVL-PTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFR-HRCLKKQKYFAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVT-------TPVIYEKLEEDAGKVFITLKIQSKLRTIFKAIN--KALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPA--VDLPIKDKLNSWKSYFQFVKEQ-KEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANIS-----------------WKTPMNFIVKQPY----------------FADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQ 3336
            RS L+E    K  L +  ++R    PYL+++ P K  V  +++++   ST   ++  R     + +G  I   FR  + LK +    +  +     + KL +N +++               S  I    I W + I+A IG +L  ++ +    +   G+  VT        P      +   G     LKI    +T+ + +N  + +       +PM   P P+  N  SG ++ T       + S     +        DI +VY+ LNVL    W +     D+V QV+N  G   L IP + ++   P  P    D  I   L +WK   + +  +     S     +YK+ IA+    +  ++P+++DFRGR YP SPH +H+G+D+SRGLL F  GKKLGP GL W+KIHL NL G  K     DR+      + ++ DSA NP  G  WW  ++KPWQ LATC E+++++K       P++F S  P+HQDG+CNGLQHYAALG D +GA  VNL+ S+ PQDVY+ V   ++ + +  A+ G E A +L+  ++RKV+KQTVMT VYGVT  G T QI ++L  +     +++   + YL+K    +I E+F SA  IQ+W  E +  IS+  + ++                  W TP+   + QPY                 +D   +   +  + K   PPNFIHSLD++HM+L+A  C ++ + F SVHD +WTHA D+D MN + RE+F+KLH   ++  L +   ++Y+
Sbjct:  473 RSLLSEKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLKSESQAFRDVNKKSPEFKKLVQNAKSV-------------FRSSQIEQSKILWPQSIRARIGSVLISMLIQVAKVSV-QGVDPVTKAKVHGEAPAFAHGYQYHNGSKLGVLKIH---KTLIRQLNGERLIASVQPQLLPMLVEPKPW-VNWRSGGYHYTQSTLLRTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWN-KGEGFLDIPGAQDEMVLPPAPPKNSDPSI---LRAWKLQVKTIANKFSSDRSNRCDTNYKLEIARAFLGEKLYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLFGFDKLPL-KDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVMKM----DNPEEFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAAEKGDENAKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSPIFDDRKESL-DFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLDVDEKSFKNGNKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKLHEVDLVLRLKEEFDQRYK 1230

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BLAST of DNA-directed RNA polymerase vs. Ensembl Nematostella
Match: EDO28665 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7T5U5])

HSP 1 Score: 356.681 bits (914), Expect = 1.591e-112
Identity = 197/418 (47.13%), Postives = 267/418 (63.88%), Query Frame = 1

Query: 2131 TLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKY 3333
            T  YK+ +A   +++ FW P +MDFRGRVYP  PH  H+GDD+SRG+L+F+ G  LGP GL W+KIHL NL G  K+ S  +R++  ++++ EV+DSA NP  G  WW   ++PWQ LATC EI K ++    +  P  + S  P+HQDGSCNGLQHYAALG D  GA  VNLI ++ PQDVY++V + +E  R  DA+ G   A LLE  ++R+V+KQTVMT VYGVT  GG LQI R+LK+L+ L  + +   +AYL      SIG++F  A  IQ+WF   +++I+      + W TP++  V QPY       +K+                 D  K + AFPPNF+HSLDSTHMMLTA+ C    I F SVHD FWTHA  +D MN++CRE+FV LH+QPIL++L  + ++ Y
Sbjct:    2 TALYKLSVANHFRDRVFWLPLNMDFRGRVYPIPPHCCHVGDDLSRGMLQFAEGVPLGPDGLRWLKIHLANLYGAKKKSSLDERVEYTDQMMPEVLDSADNPLTGARWWMHGDEPWQVLATCMEIAKAVR----SPDPAQYVSHQPVHQDGSCNGLQHYAALGHDRYGARQVNLIPADRPQDVYAEVAKLVEEARLHDAEQGHRIATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQLKDLD-LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWFALSATHIAYTGHC-VDWYTPLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMMLTAVHCQRAGINFASVHDSFWTHAAHIDIMNRLCREQFVSLHTQPILQDLQAHFVDNY 413

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BLAST of DNA-directed RNA polymerase vs. Ensembl Nematostella
Match: EDO41702 (DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:A7S3D0])

HSP 1 Score: 340.887 bits (873), Expect = 1.634e-105
Identity = 210/506 (41.50%), Postives = 295/506 (58.30%), Query Frame = 1

Query: 1738 MPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ----PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQK-------EMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTAL 3171
            +PM  PP P+    + GF        +++R +   D   D + +      ++S V ++LN L  C+WK  N  LDL +QVFND G+  L IP       GP  P    P++  +   ++  + ++E +       E YSL  T  YK+ +A   +++ FW P +MDFRGRVYP  PH  H+GDD+SRG+L+F+ G  LGP GL W+KIHL NL G  K+ S  +R++  ++++SEV+DSA NP  G  WW   ++PWQ LATC EI K ++    +  P  + S  P+HQDGSCNGLQHYAALG D  GA  VNLI ++ PQDVY++V + +E  R  DA+ G   A LLE  ++R+V+KQTVMT VYGVT  GG LQI R+LK+L+ L  + +   +AYL      SIG++F  A  IQ+WF   +++I+      + W TP++  V QPY       +K+                 D  K + AFPPNF+HSLDSTHMMLTA+
Sbjct:    6 LPMLVPPRPWRGIRDGGFLI---QPVQLMRSTQEMDDNHDHMLRYKCDSRELSAVLDSLNYLGTCAWKTNNRILDLAIQVFNDQGDDTLAIP-------GPVVPLELEPLEKSVKEPEARMKQIQEHRRARKLAREHYSLRMTALYKLSVANHFRDRVFWLPLNMDFRGRVYPIPPHCCHVGDDLSRGMLQFAEGVPLGPDGLRWLKIHLANLYGAKKKSSLDERVEYTDQMMSEVLDSADNPLTGARWWMHGDEPWQVLATCMEIAKAVR----SPDPAQYVSHQPVHQDGSCNGLQHYAALGHDRYGARQVNLIPADRPQDVYAEVAKLVEEARLHDAEQGHRIATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQLKDLD-LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWFALSATHIAYTGHC-VDWYTPLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMMLTAV 495

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Nematostella
Match: EDO47752 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RKW2])

HSP 1 Score: 180.259 bits (456), Expect = 4.194e-47
Identity = 113/263 (42.97%), Postives = 155/263 (58.94%), Query Frame = 1

Query: 2731 GVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKY---QFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFF 3459
            G   A LLE  ++R+V+KQTVMT VYGVT  GG LQI R+LK+L+ L  + +   +AYL      SIG++F  A  IQ+WF   +++I+      + W TP++  V QPY       +K+                 D  K + AFPPNF+HSLDSTHMMLTA+ C    I F SVHD FWTHA  +D MN++CRE+FV LH+QPIL++L  + ++ Y   +F     + D+      N   + +P+ G FD+ EVLDSTYFF
Sbjct:  427 GHRIATLLEDKVTRRVVKQTVMTIVYGVTFVGGRLQIERQLKDLD-LDERVLFEASAYLVHKVFASIGQMFTRAKAIQDWFALSATHIAYTGHC-VDWYTPLSLYVCQPYCKKAVKTIKTRLQGIEIPTQGFAMSVPDSRKQRAAFPPNFVHSLDSTHMMLTAVHCQRAGINFASVHDSFWTHAAHIDIMNRLCREQFVSLHTQPILQDLQTHFVDNYGGLKFMRPLKKKDHAP--IHNATFEGLPEIGDFDVSEVLDSTYFF 685

HSP 2 Score: 113.62 bits (283), Expect = 1.128e-25
Identity = 78/294 (26.53%), Postives = 135/294 (45.92%), Query Frame = 1

Query: 1429 NIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAI-----NKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQ----PDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQK-------EMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVS 2262
             +++ + +++S+ + ID        + W+ K+      I + I    ++   +N  +    P  Y   E    +    +K  S +  +FK       + A+P  S   +PM  PP P+    + GF        +++R +   D   D + +      ++S V ++LN L  C+WK  N  LDL +QVFND G+  L IP       GP  P    P++  +   ++  + ++E +       E YSL  T  YK+ +A   +++ FW P +MDFRGRVYP  PH  H+G  ++
Sbjct:  158 GLDLGRPYDASLKQEIDD-------LPWATKLLCGCTLIDFLIQSVKIDANLFNAKSESLLPGFYHSYEFRERRKIGVIKPHSVVCKLFKGYLADHGDIAMPTTS---LPMLVPPRPWRDIRDGGFLI---QPVQLMRSTQEMDDNHDHMLRYKCDSRELSAVLDSLNYLGTCAWKTNNRILDLAIQVFNDQGDDTLAIP-------GPVVPLELEPLEKSVKEPEARMKQIQEHRRARKLAREHYSLRMTALYKLSVANHFRDRVFWLPLNMDFRGRVYPIPPHCCHVGHRIA 431

[Close]

BLAST of DNA-directed RNA polymerase vs. Ensembl Medaka
Match: polrmt (RNA polymerase mitochondrial [Source:NCBI gene;Acc:101162744])

HSP 1 Score: 544.658 bits (1402), Expect = 5.337e-172
Identity = 360/1038 (34.68%), Postives = 554/1038 (53.37%), Query Frame = 1

Query:  502 TYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNII-------CNKPELKNKSALKETCIFS----SIDELEKFFEVQLNNEILTSVNVDPIHN---VTVNPEILKKVILIEDT-WRSSLTEAYEKKITLLEYSD----RSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQ--NIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENM--NFTFYN-GITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANK------FNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKS-----------------DCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQIN-PNENDNGRKIAFNK---LLKNIPKKGTFDIREVLDSTYFFS 3462
            +Y++ CI  GD E+A     S        H V  +  ++++  Y  +M++ AK G ++ I  +   ++E  + PN+      +E   +N   + + + R +  ++   ++L+         ++    +L+A++ +EP +          C  P + +    +E   +     S +EL + F+ QL+ E   +V +D +     VT N   +++++  + T W   L +A  +   +L  ++    R  LYPYL +L    YVD MIQ V  +    E     ++ +   +G+ +   +  R   + +   +L SI  +Y   L+++ +   +   + W    ME     S+  D   W   +   +G  L +IM +N+  N    N        P++Y      + +    +K    L  + +   +    F    MPM  PPVP+  + + G + LT   T+++R        +  LE+   +  V+++LN L  C+WKI    LD+++ +FND G+ KL IP   ++      FN P+ PA     K  +   +      K+  EM+SL     YK+ IA  ++ + FW+P++MDFRGR YPC P+ +H+G DV+R +L F+ GK LGPKGLDW+KIHL+NL G  KR S   RL+ AN ++ +++DSA NP  GR WW  +++PWQ LA C EI +  +    +  P  F S  P+HQDGSCNGLQHYAALG+D  GA +VNL+  + PQDVYS V + +E  R  DA++G++ A +LEG +SRKV+KQTVMT VYGVT+YGG LQI + LK +E  P ++I   + YL +L    + E+F     IQ+W  E +  IS+     + W TP+   + QPY    + +LKS                 D +K KNAFPPNFIHSLDSTHMMLTAL C+   +TFVSVHDCFWTHA  VD MNK+CRE+FV LHSQPIL+ LSD+LL KY      P E  + +   + +   LL  +P+ G FD+++V +STYFFS
Sbjct:  333 SYLEACIFIGDVERAQRFLLS-------QHRVRSRRKLLNTGVYNIMMRVWAKKGMLNQIGRIFILLEEAGLKPNLGSYSAALECMGRNPNCSPKAISRCLNQMEEDGLTLDDLFSDCVFRRDEKDMMLQAIRAVEPGYEPRPHLLTDECPSPLVHHFYTQREHHSYPKLALSQEELLERFQQQLSVERACTVTIDSVETTKPVTENMRKMRELLAEQRTHWEKILHQALRESKMILANTNTRDYRLNLYPYLCLLEDGEYVDIMIQSVANMPPSGE----SLKVLARDLGHRVYTKYCVRQKFENQAVEKLGSIYSAYTELLAKDTKVSRVLPREQWTRLQMEQSSGPSLQGDDTSWPHIVTLELGTHLVDIMVKNLKINSDILNPSQDRKLIPILYHMYTFRSTRQVGFIKPHPILVQMQQEAMETRLTFDSYVMPMLCPPVPW-TSVKFGAYVLT--PTKLMRTVEGATQHEQLLEKSQHLEPVFDSLNQLGNCAWKINKPLLDIIISIFNDRGSDKLDIPPPMSEAPKIPHFN-PQDPAYTASQKALMK--REVINAKKKGSEMHSLRMDALYKLSIAHHMREETFWFPHNMDFRGRTYPCPPYFNHLGSDVTRAMLVFAEGKPLGPKGLDWLKIHLVNLTGLKKRSSLQGRLQYANSIMEDILDSADNPLHGRKWWMNADEPWQALACCMEIARAAR----SPDPAKFVSHFPVHQDGSCNGLQHYAALGRDVIGATSVNLVPCDVPQDVYSGVAQQVEELRARDARDGLKIAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIENFPKEHIWDASHYLVRLVFNGLKEMFTGTREIQDWLTESARLISKC-GHTVEWVTPLGLPIIQPYHRTRNQVLKSSIQHINLQISHDSKERPDTVKQKNAFPPNFIHSLDSTHMMLTALHCYSAGLTFVSVHDCFWTHALTVDTMNKVCREQFVALHSQPILQELSDFLLHKYCSGSGLPAEAKSKKYQEYRRLMLLLTKVPQTGDFDLQQVKESTYFFS 1348

[Close]

BLAST of DNA-directed RNA polymerase vs. Planmine SMEST
Match: SMESG000026344.1 (SMESG000026344.1)

HSP 1 Score: 2097.78 bits (5434), Expect = 0.000e+0
Identity = 1051/1056 (99.53%), Postives = 1053/1056 (99.72%), Query Frame = 1

Query:  295 MKYVNIIEEINQLKTEEFLPKKLEEAINITSLKLLKFFPHYKHQKVKELNNVSALRFIKSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETCIFSSIDELEKFFEVQLNNEILTSVNVDPIHNVTVNPEILKKVILIEDTWRSSLTEAYEKKITLLEYSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 3462
            MKYVNIIEEINQLKTEEFLPKKLEEAINITSLKLLKFFPHYKHQKVKELNNVSALRFIKSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETCI SSIDELEKFFEVQLNNEILTSVNVDPI NVTVNPEILKKVILIEDTWRSSLTEAYEKKITLLEYSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLS+NPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAAN+VISEVIDSA NPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYAALGKDAKGAAAVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTQYGGTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS
Sbjct:    1 MKYVNIIEEINQLKTEEFLPKKLEEAINITSLKLLKFFPHYKHQKVKELNNVSALRFIKSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETCISSSIDELEKFFEVQLNNEILTSVNVDPIRNVTVNPEILKKVILIEDTWRSSLTEAYEKKITLLEYSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSDNPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANDVISEVIDSAVNPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYAALGKDAKGAAAVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTQYGGTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS 1056

[Close]

BLAST of DNA-directed RNA polymerase vs. Planmine SMEST
Match: SMESG000026344.1 (SMESG000026344.1)

HSP 1 Score: 2063.5 bits (5345), Expect = 0.000e+0
Identity = 1036/1041 (99.52%), Postives = 1038/1041 (99.71%), Query Frame = 1

Query:  295 MKYVNIIEEINQLKTEEFLPKKLEEAINITSLKLLKFFPHYKHQKVKELNNVSALRFIKSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETCIFSSIDELEKFFEVQLNNEILTSVNVDPIHNVTVNPEILKKVILIEDTWRSSLTEAYEKKITLLEYSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVIDSAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYXXXXXXXXXXXXVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKXXXXXXXXXXXXXXXXLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKG 3417
            MKYVNIIEEINQLKTEEFLPKKLEEAINITSLKLLKFFPHYKHQKVKELNNVSALRFIKSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETCI SSIDELEKFFEVQLNNEILTSVNVDPI NVTVNPEILKKVILIEDTWRSSLTEAYEKKITLLEYSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLS+NPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAAN+VISEVIDSA NPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYAALGKDAKGAAAVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTQYGGTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKG
Sbjct:    1 MKYVNIIEEINQLKTEEFLPKKLEEAINITSLKLLKFFPHYKHQKVKELNNVSALRFIKSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIVDSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKNELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNFNIICNKPELKNKSALKETCISSSIDELEKFFEVQLNNEILTSVNVDPIRNVTVNPEILKKVILIEDTWRSSLTEAYEKKITLLEYSDRSKLYPYLSVLPTKSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKYFAQLKSICLSYYGKLSDNPQNIEMDKLWESSIMENIDSGSIVHDTIDWSKKIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLKIQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATRIIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVFNDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMYSLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRGLLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANDVISEVIDSAVNPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPIHQDGSCNGLQHYAALGKDAKGAAAVNLIQSETPQDVYSDVLEHLEVKRKEDAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTQYGGTLQILRELKNLEKLPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANISWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTALSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDYLLEKYQFQINPNENDNGRKIAFNKLLKNIPKKG 1041

The following BLAST results are available for this feature:

BLAST of DNA-directed RNA polymerase vs. Ensembl Human
BLAST of DNA-directed RNA polymerase vs. Ensembl Celegans
BLAST of DNA-directed RNA polymerase vs. Ensembl Fly
BLAST of DNA-directed RNA polymerase vs. Ensembl Zebrafish
BLAST of DNA-directed RNA polymerase vs. Ensembl Xenopus
BLAST of DNA-directed RNA polymerase vs. Ensembl Mouse
BLAST of DNA-directed RNA polymerase vs. UniProt/SwissProt
BLAST of DNA-directed RNA polymerase vs. TrEMBL
BLAST of DNA-directed RNA polymerase vs. Ensembl Cavefish
BLAST of DNA-directed RNA polymerase vs. Ensembl Sea Lamprey
BLAST of DNA-directed RNA polymerase vs. Ensembl Yeast
BLAST of DNA-directed RNA polymerase vs. Ensembl Nematostella
BLAST of DNA-directed RNA polymerase vs. Ensembl Medaka
BLAST of DNA-directed RNA polymerase vs. Planmine SMEST

BLAST of DNA-directed RNA polymerase vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 2


Match Name	E-value	Identity	Description
POLRMT	4.715e-159	33.14	RNA polymerase mitochondrial [Source:HGNC Symbol;A...	[more]
POLRMT	1.755e-34	67.95	RNA polymerase mitochondrial [Source:HGNC Symbol;A...	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 3


Match Name	E-value	Identity	Description
rpom-1	4.640e-127	36.36	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
rpom-1	4.640e-127	36.36	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
rpom-1	4.944e-123	35.67	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2


Match Name	E-value	Identity	Description
mtRNApol	1.323e-156	32.52	gene:FBgn0261938 transcript:FBtr0332273	[more]
mtRNApol	1.323e-156	32.52	gene:FBgn0261938 transcript:FBtr0077989	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 1


Match Name	E-value	Identity	Description
polrmt	3.203e-165	34.39	polymerase (RNA) mitochondrial (DNA directed) [Sou...	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
pacrg	3.125e-169	34.04	parkin co-regulated [Source:Xenbase;Acc:XB-GENE-62...	[more]
pacrg	6.033e-169	34.04	parkin co-regulated [Source:Xenbase;Acc:XB-GENE-62...	[more]
pacrg	3.987e-162	33.79	parkin co-regulated [Source:Xenbase;Acc:XB-GENE-62...	[more]
pacrg	6.429e-161	33.94	parkin co-regulated [Source:Xenbase;Acc:XB-GENE-62...	[more]
pacrg	1.023e-160	34.07	parkin co-regulated [Source:Xenbase;Acc:XB-GENE-62...	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 4


Match Name	E-value	Identity	Description
Polrmt	3.584e-156	33.56	polymerase (RNA) mitochondrial (DNA directed) [Sou...	[more]
Polrmt	1.491e-145	44.06	polymerase (RNA) mitochondrial (DNA directed) [Sou...	[more]
Polrmt	3.023e-99	42.01	polymerase (RNA) mitochondrial (DNA directed) [Sou...	[more]
Polrmt	2.214e-69	27.12	polymerase (RNA) mitochondrial (DNA directed) [Sou...	[more]

BLAST of DNA-directed RNA polymerase vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|O00411\|RPOM_HUMAN	2.264e-158	33.14	DNA-directed RNA polymerase, mitochondrial OS=Homo...	[more]
sp\|Q8BKF1\|RPOM_MOUSE	2.507e-155	33.56	DNA-directed RNA polymerase, mitochondrial OS=Mus ...	[more]
sp\|O24600\|RPOT3_ARATH	4.698e-103	38.06	DNA-directed RNA polymerase 3, chloroplastic OS=Ar...	[more]
sp\|Q8L6J3\|RPO2B_TOBAC	2.310e-98	32.88	DNA-directed RNA polymerase 2B, chloroplastic/mito...	[more]
sp\|Q8VWF8\|RPOT2_NICSY	1.355e-97	34.20	DNA-directed RNA polymerase 2, chloroplastic/mitoc...	[more]

BLAST of DNA-directed RNA polymerase vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A087VZB8	0.000e+0	33.58	DNA-directed RNA polymerase OS=Echinococcus multil...	[more]
A0A3Q0KPI7	0.000e+0	34.60	DNA-directed RNA polymerase OS=Schistosoma mansoni...	[more]
A0A0X3P3U9	0.000e+0	32.62	DNA-directed RNA polymerase (Fragment) OS=Schistoc...	[more]
A0A068WX42	0.000e+0	32.79	DNA-directed RNA polymerase OS=Echinococcus granul...	[more]
A0A4Z2DVV8	0.000e+0	39.25	DNA-directed RNA polymerase OS=Schistosoma japonic...	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 2


Match Name	E-value	Identity	Description
polrmt	1.758e-163	34.67	RNA polymerase mitochondrial [Source:NCBI gene;Acc...	[more]
polrmt	6.437e-149	45.16	RNA polymerase mitochondrial [Source:NCBI gene;Acc...	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 1


Match Name	E-value	Identity	Description
ENSPMAT00000005603.1	1.295e-109	30.36	pep scaffold:Pmarinus_7.0:GL476532:352361:404828:1...	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
RPO41	7.396e-98	32.19	Mitochondrial RNA polymerase; single subunit enzym...	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 3


Match Name	E-value	Identity	Description
EDO28665	1.591e-112	47.13	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
EDO41702	1.634e-105	41.50	DNA-directed RNA polymerase [Source:UniProtKB/TrE...	[more]
EDO47752	4.194e-47	42.97	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of DNA-directed RNA polymerase vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 1


Match Name	E-value	Identity	Description
polrmt	5.337e-172	34.68	RNA polymerase mitochondrial [Source:NCBI gene;Acc...	[more]

BLAST of DNA-directed RNA polymerase vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 2


Match Name	E-value	Identity	Description
SMESG000026344.1	0.000e+0	99.53	SMESG000026344.1	[more]
SMESG000026344.1	0.000e+0	99.52	SMESG000026344.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30028902 ID=SMED30028902|Name=DNA-directed RNA polymerase|organism=Schmidtea mediterranea sexual|type=transcript|length=3505bp
GTCGGTTTTTGAATATTCATGCTTCATTTTGTTAGAGCCATTAAATTAAT
TCCAAAAATCAATATTAAATTCTATTCTAACTTTAATCAAGATTTTAAGC
CTCATTTTCATTCAAACAATAATTTGCATGGATGTATTAATCATAACATA
AAATTATGTGATTTAAAAATCGAGGAGATAAATCAAAAAATTGAATTGAT
TGAATTTCAACCATATGAAAAGTTTTTCTTTAAAGACAAAGTTGTACCAA
ATTTATTTCAAAAACCGACTGAAGAAATTTCAAAACCTATTGATATGAAA
TATGTGAATATCATAGAGGAGATCAATCAATTAAAAACTGAAGAATTTTT
GCCTAAGAAACTCGAAGAAGCGATTAATATTACTAGCCTTAAGTTGTTAA
AATTTTTCCCACATTATAAACATCAAAAAGTTAAAGAATTAAACAATGTT
TCTGCTCTACGGTTCATTAAAAGTCTCGTTTATAACACTAATAACCATGC
GACATATATGGATGTGTGTATACAAAAAGGAGACTATGAAAAGGCACTTA
GTTTATTCAATTCTGTTAGAAATGAGAATGAAACCTATCATTCAGTTGAT
AAAAAGTCAATTATTGTCGATTCGGTTTTCTACGAACCAATTATGAAATT
GCTCGCGAAAAACGGGAAAATAGATGCTATTATCACACTTTTAAATGAAA
TGGATGAATTTCATATTTTGCCAAATATATCGATAATTTTCCGAACAATC
GAAGCTGCTAGTAAAAATGAATTATTGAATACAGAGTTTCTCCACCGAAT
GATGGGGTATGTTAAATGCCATAATATATCATTGGAGAAAGCCATTTTAA
AAGCTCCAATAACAAAAGAAAATTTTAGTCACATATTGAAAGCTCTTCAA
ATGATAGAACCGAATTTCAATATCATTTGTAACAAACCAGAATTGAAAAA
TAAATCTGCATTGAAAGAAACTTGCATATTTTCATCGATCGATGAATTGG
AAAAATTTTTCGAAGTTCAACTAAACAATGAAATATTAACCAGCGTAAAT
GTCGATCCGATACACAATGTAACAGTTAATCCAGAAATTCTGAAAAAAGT
CATATTAATCGAAGACACCTGGCGATCGAGTCTTACAGAAGCGTATGAGA
AAAAAATCACTCTTCTAGAGTATTCTGATCGCTCAAAATTGTATCCGTAT
TTATCGGTGTTACCAACAAAATCCTATGTCGATGCAATGATACAAGTCGT
CTTTCAGCTGTCAACCGATTCTGAATTACAATTCAACAGAATTCAACACG
TTCACTTGCATATTGGAAATATTATCAGTAACATGTTTCGTCATCGCTGT
CTGAAAAAACAGAAATATTTCGCCCAATTAAAATCGATCTGCTTGTCGTA
TTACGGAAAATTATCGGAAAACCCTCAAAACATAGAAATGGACAAATTAT
GGGAATCATCGATTATGGAAAATATCGATTCGGGGAGTATTGTCCACGAT
ACAATCGATTGGAGTAAAAAAATCAAAGCTTCAATTGGAAAAATTCTCTA
TGAAATCATGTTTGAAAATATGAATTTCACATTCTATAACGGAATAACAG
CGGTAACGACTCCGGTTATCTATGAAAAACTCGAAGAGGATGCTGGAAAA
GTGTTTATCACTTTAAAAATCCAATCGAAACTAAGAACGATATTTAAAGC
GATCAATAAAGCGTTACCGGGTTTCTCTCAGTTAGACATGCCGATGACCC
ACCCGCCAGTTCCATTTCACAAAAATCACGAATCGGGATTTTTCTACTTG
ACAAATTACGCAACGAGAATCATAAGAAAATCGACAATTTTCGATATTTT
CGATGACGACCTCGAGCAACCGGATGATATCAGCAAAGTCTATAATGCAC
TCAATGTACTGAGTTTATGCTCATGGAAAATCGAAAACGCGAATTTGGAT
TTGGTTATGCAGGTTTTCAATGACAGTGGAAACATGAAATTGAAAATTCC
CACCTCAGCAAATAAATTTAATGGGCCCGAAAAACCAGCGGTTGATTTGC
CGATCAAGGACAAATTGAATAGTTGGAAGTCGTATTTTCAGTTTGTTAAA
GAACAGAAAGAAATGTATTCACTCTGGTCGACATTGTCGTATAAAATCAT
GATTGCTCAGAAATTAAAAAACAAACCGTTCTGGTATCCGTATTCGATGG
ATTTCCGGGGTAGGGTTTATCCGTGCTCGCCACATTTAAGTCATATCGGT
GATGACGTCAGTAGAGGATTACTTAGATTTAGTCTCGGTAAAAAATTAGG
TCCAAAGGGATTGGATTGGATAAAAATTCATTTGATTAATCTTTGTGGAA
CTCACAAAAGAAAATCTAATAGCGACAGATTAAAAGCAGCCAATGAGGTG
ATTTCAGAAGTTATTGATTCAGCAGCTAATCCTTTTGATGGCCGCTGCTG
GTGGCAATTATCTGAAAAACCCTGGCAAACCTTAGCAACGTGCCGGGAAA
TTCATAAGATTTTAAAGTTTGTTAAAAGCAATGGCAAACCTGATGACTTT
CACTCTACTTTACCCATTCATCAAGATGGATCATGTAATGGCCTACAGCA
TTATGCTGCTTTAGGGAAGGATGCTAAAGGCGCAGCTGCTGTAAACTTGA
TCCAGTCAGAAACACCACAAGATGTTTATTCAGATGTTTTAGAACATCTA
GAAGTGAAACGAAAAGAAGATGCTAAAAATGGTGTTGAAGAAGCAATTTT
ATTGGAAGGATTATTATCTCGAAAAGTTATCAAACAAACGGTTATGACAA
CTGTATACGGTGTAACTCAATATGGAGGAACTTTACAGATTTTACGCGAA
TTGAAAAATCTTGAAAAACTGCCACCGCAAAATATCAAATCGTGTGCTGC
TTATTTATCCAAATTAACATTGGGTTCAATCGGAGAAATTTTTGCTTCAG
CAACTAATATTCAAAATTGGTTTATTGAGTTGTCTTCTAACATCAGTAGA
TTACGCAAAGCCAATATTTCCTGGAAAACACCAATGAATTTTATAGTGAA
ACAACCATATTTTGCTGATGATAGTGACATTTTGAAATCAGATTGTCTCA
AAAATAAAAATGCATTTCCTCCTAACTTTATTCATTCCCTTGATTCGACT
CACATGATGTTGACGGCTCTGAGTTGCTGGGAAAAAAACATAACATTCGT
ATCAGTACACGATTGTTTTTGGACACATGCTTGCGATGTTGATGAAATGA
ATAAGATTTGCAGAGAAGAATTTGTAAAATTACATTCGCAACCAATTCTT
GAAAATTTATCAGATTATCTTTTAGAAAAGTATCAATTCCAGATTAATCC
AAATGAAAATGACAATGGCAGAAAAATAGCATTTAATAAATTATTAAAAA
ATATACCGAAAAAGGGAACTTTCGATATCAGAGAAGTTTTGGACTCGACT
TATTTTTTTAGTTGAAATGTTTTTAGAAAAAATAAAAATTCAGCATTTAA
AAAAA

protein sequence of SMED30028902-orf-1

>SMED30028902-orf-1 ID=SMED30028902-orf-1|Name=SMED30028902-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=1149bp
MLHFVRAIKLIPKINIKFYSNFNQDFKPHFHSNNNLHGCINHNIKLCDLK
IEEINQKIELIEFQPYEKFFFKDKVVPNLFQKPTEEISKPIDMKYVNIIE
EINQLKTEEFLPKKLEEAINITSLKLLKFFPHYKHQKVKELNNVSALRFI
KSLVYNTNNHATYMDVCIQKGDYEKALSLFNSVRNENETYHSVDKKSIIV
DSVFYEPIMKLLAKNGKIDAIITLLNEMDEFHILPNISIIFRTIEAASKN
ELLNTEFLHRMMGYVKCHNISLEKAILKAPITKENFSHILKALQMIEPNF
NIICNKPELKNKSALKETCIFSSIDELEKFFEVQLNNEILTSVNVDPIHN
VTVNPEILKKVILIEDTWRSSLTEAYEKKITLLEYSDRSKLYPYLSVLPT
KSYVDAMIQVVFQLSTDSELQFNRIQHVHLHIGNIISNMFRHRCLKKQKY
FAQLKSICLSYYGKLSENPQNIEMDKLWESSIMENIDSGSIVHDTIDWSK
KIKASIGKILYEIMFENMNFTFYNGITAVTTPVIYEKLEEDAGKVFITLK
IQSKLRTIFKAINKALPGFSQLDMPMTHPPVPFHKNHESGFFYLTNYATR
IIRKSTIFDIFDDDLEQPDDISKVYNALNVLSLCSWKIENANLDLVMQVF
NDSGNMKLKIPTSANKFNGPEKPAVDLPIKDKLNSWKSYFQFVKEQKEMY
SLWSTLSYKIMIAQKLKNKPFWYPYSMDFRGRVYPCSPHLSHIGDDVSRG
LLRFSLGKKLGPKGLDWIKIHLINLCGTHKRKSNSDRLKAANEVISEVID
SAANPFDGRCWWQLSEKPWQTLATCREIHKILKFVKSNGKPDDFHSTLPI
HQDGSCNGLQHYAALGKDAKGAAAVNLIQSETPQDVYSDVLEHLEVKRKE
DAKNGVEEAILLEGLLSRKVIKQTVMTTVYGVTQYGGTLQILRELKNLEK
LPPQNIKSCAAYLSKLTLGSIGEIFASATNIQNWFIELSSNISRLRKANI
SWKTPMNFIVKQPYFADDSDILKSDCLKNKNAFPPNFIHSLDSTHMMLTA
LSCWEKNITFVSVHDCFWTHACDVDEMNKICREEFVKLHSQPILENLSDY
LLEKYQFQINPNENDNGRKIAFNKLLKNIPKKGTFDIREVLDSTYFFS*

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0000026	gut
PLANA:0000429	neoblast
PLANA:0002109	X1 cell
PLANA:0002111	X2 cell

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR029262	RPOL_N
IPR002092	DNA-dir_Rpol_phage-type
IPR024075	DNA-dir_RNA_pol_helix_hairpin
IPR002885	Pentatricopeptide_repeat

Vocabulary: **molecular function**
Term	Definition
GO:0005515	protein binding
GO:0003899	DNA-directed 5'-3' RNA polymerase activity
GO:0003677	DNA binding
GO:0016740	transferase activity
GO:0016779	nucleotidyltransferase activity

Vocabulary: **biological process**
Term	Definition
GO:0006351	transcription, DNA-templated

InterPro

Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029262	DNA-directed RNA polymerase, N-terminal	SMART	SM01311	RPOL_N_2	coord: 332..633 e-value: 1.6E-7 score: 6.6
IPR029262	DNA-directed RNA polymerase, N-terminal	PFAM	PF14700	RPOL_N	coord: 367..632 e-value: 3.4E-18 score: 66.1
None	No IPR available	GENE3D	G3DSA:1.10.150.20		coord: 870..1048 e-value: 2.8E-127 score: 427.1
None	No IPR available	GENE3D	G3DSA:1.10.287.280		coord: 758..843 e-value: 2.8E-127 score: 427.1
None	No IPR available	GENE3D	G3DSA:3.30.70.370		coord: 728..1108 e-value: 2.8E-127 score: 427.1
None	No IPR available	PANTHER	PTHR10102:SF0	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	coord: 283..1148
None	No IPR available	SUPERFAMILY	SSF56672	DNA/RNA polymerases	coord: 367..1148
IPR002092	DNA-directed RNA polymerase, phage-type	PFAM	PF00940	RNA_pol	coord: 758..1148 e-value: 1.0E-140 score: 469.3
IPR002092	DNA-directed RNA polymerase, phage-type	PANTHER	PTHR10102	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	coord: 283..1148
IPR002092	DNA-directed RNA polymerase, phage-type	PROSITE	PS00900	RNA_POL_PHAGE_1	coord: 849..860
IPR002092	DNA-directed RNA polymerase, phage-type	PROSITE	PS00489	RNA_POL_PHAGE_2	coord: 916..930
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 128..300 e-value: 1.6E-8 score: 36.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 201..235 score: 8.977
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 156..190 score: 6.61