SMED30028823

Overview


Name	SMED30028823
Smed ID	SMED30028823
Length (bp)	378

Neoblast Clusters

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)

Explore this single cell expression dataset with our NB Cluster Shiny App

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

Anatomical Expression

PAGE et. al., 2020

SMED30028823

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Expressed In	Reference Transcript	Gene Models	Published Transcript	Transcriptome	Publication	Specimen	Lifecycle	Evidence
reproductive organ	SMED30028823	SMESG000043645.1	Contig42230	newmark_ests	PMID:28434803 Rouhana et al., 2017
reproductive organ	SMED30028823	SMESG000043645.1	Contig42230	uc_Smed_v2	PMID:28434803 Rouhana et al., 2017

Note: Hover over icons to view figure legend

Alignments

SMED30028823 aligns in the following genomic locations:


Alignment Location	Alignment Score
v31.002661:56421..56798 -	1881

Homology

[Close]

BLAST of SMED30028823 vs. Ensembl Human
Match: SLC16A14 (solute carrier family 16 member 14 [Source:HGNC Symbol;Acc:HGNC:26417])

HSP 1 Score: 68.9366 bits (167), Expect = 3.565e-14
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            V  G+G G+ YLP++++V  +F+K+R LA G++  G+G GTF+M+ L+++L + YGWR A
Sbjct:  132 VAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNA 191

[Close]

BLAST of SMED30028823 vs. Ensembl Human
Match: SLC16A14 (solute carrier family 16 member 14 [Source:HGNC Symbol;Acc:HGNC:26417])

HSP 1 Score: 68.9366 bits (167), Expect = 4.051e-14
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            V  G+G G+ YLP++++V  +F+K+R LA G++  G+G GTF+M+ L+++L + YGWR A
Sbjct:  132 VAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNA 191

[Close]

BLAST of SMED30028823 vs. Ensembl Human
Match: SLC16A14 (solute carrier family 16 member 14 [Source:HGNC Symbol;Acc:HGNC:26417])

HSP 1 Score: 68.9366 bits (167), Expect = 4.163e-14
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            V  G+G G+ YLP++++V  +F+K+R LA G++  G+G GTF+M+ L+++L + YGWR A
Sbjct:  132 VAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNA 191

[Close]

BLAST of SMED30028823 vs. Ensembl Human
Match: SLC16A12 (solute carrier family 16 member 12 [Source:HGNC Symbol;Acc:HGNC:23094])

HSP 1 Score: 65.855 bits (159), Expect = 3.920e-13
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ G+GF L Y P+I +V  +F +++ LA GIA+ GSG+GTF+++P+++ L+  + WR A
Sbjct:  143 LTLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGA 206

[Close]

BLAST of SMED30028823 vs. Ensembl Human
Match: SLC16A3 (solute carrier family 16 member 3 [Source:HGNC Symbol;Acc:HGNC:10924])

HSP 1 Score: 58.151 bits (139), Expect = 4.376e-11
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = -3

Query:  185 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 376
            V L + VI G+G  L + PS+I++N +F K+RP+A G+A  GS +    +SPL + L   YGWR
Sbjct:   88 VYLTTGVITGLGLALNFQPSLIMLNRYFSKRRPMANGLAAAGSPVFLCALSPLGQLLQDRYGWR 151

[Close]

BLAST of SMED30028823 vs. Ensembl Celegans
Match: mct-6 (MonoCarboxylate Transporter family [Source:UniProtKB/TrEMBL;Acc:O17328])

HSP 1 Score: 77.7962 bits (190), Expect = 1.052e-17
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = -3

Query:  185 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 376
            +++   VI G GFGL+Y P+I+IV ++FE KR LA GIAV G+G+GT + +P+  F ++ YGWR
Sbjct:  116 IVITVGVIMGTGFGLMYCPAIVIVTMYFENKRSLATGIAVAGAGVGTVLFAPINAFFINNYGWR 179

[Close]

BLAST of SMED30028823 vs. Ensembl Celegans
Match: mct-4 (MonoCarboxylate Transporter family [Source:UniProtKB/TrEMBL;Acc:H2L0E5])

HSP 1 Score: 67.781 bits (164), Expect = 3.926e-14
Identity = 26/63 (41.27%), Postives = 46/63 (73.02%), Query Frame = -3

Query:  185 ILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 373
            +L   V+ G+GFG++YLP+I++V  +F+ KR +A GI+V GSG+GTF++  + +  ++  GW+
Sbjct:  169 MLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVPLICQVCIANLGWQ 231

[Close]

BLAST of SMED30028823 vs. Ensembl Celegans
Match: mct-4 (MonoCarboxylate Transporter family [Source:UniProtKB/TrEMBL;Acc:H2L0E5])

HSP 1 Score: 67.0106 bits (162), Expect = 6.504e-14
Identity = 26/63 (41.27%), Postives = 46/63 (73.02%), Query Frame = -3

Query:  185 ILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 373
            +L   V+ G+GFG++YLP+I++V  +F+ KR +A GI+V GSG+GTF++  + +  ++  GW+
Sbjct:  169 MLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVPLICQVCIANLGWQ 231

[Close]

BLAST of SMED30028823 vs. Ensembl Celegans
Match: mct-4 (MonoCarboxylate Transporter family [Source:UniProtKB/TrEMBL;Acc:H2L0E5])

HSP 1 Score: 67.0106 bits (162), Expect = 7.340e-14
Identity = 26/63 (41.27%), Postives = 46/63 (73.02%), Query Frame = -3

Query:  185 ILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 373
            +L   V+ G+GFG++YLP+I++V  +F+ KR +A GI+V GSG+GTF++  + +  ++  GW+
Sbjct:  114 MLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVPLICQVCIANLGWQ 176

[Close]

BLAST of SMED30028823 vs. Ensembl Celegans
Match: mct-4 (MonoCarboxylate Transporter family [Source:UniProtKB/TrEMBL;Acc:H2L0E5])

HSP 1 Score: 67.0106 bits (162), Expect = 7.340e-14
Identity = 26/63 (41.27%), Postives = 46/63 (73.02%), Query Frame = -3

Query:  185 ILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 373
            +L   V+ G+GFG++YLP+I++V  +F+ KR +A GI+V GSG+GTF++  + +  ++  GW+
Sbjct:  114 MLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVPLICQVCIANLGWQ 176

[Close]

BLAST of SMED30028823 vs. Ensembl Fly
Match: Mct1 (gene:FBgn0023549 transcript:FBtr0342765)

HSP 1 Score: 75.8702 bits (185), Expect = 5.927e-17
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = -3

Query:  179 VYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 331
            +YLP+I+ V  +FE KR LA GIAVCGSG GTFV +PL EFL+  YGWR A
Sbjct:  142 IYLPAIVSVTQYFEAKRSLATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGA 192

[Close]

BLAST of SMED30028823 vs. Ensembl Fly
Match: Mct1 (gene:FBgn0023549 transcript:FBtr0070393)

HSP 1 Score: 75.8702 bits (185), Expect = 5.927e-17
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = -3

Query:  179 VYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 331
            +YLP+I+ V  +FE KR LA GIAVCGSG GTFV +PL EFL+  YGWR A
Sbjct:  142 IYLPAIVSVTQYFEAKRSLATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGA 192

[Close]

BLAST of SMED30028823 vs. Ensembl Fly
Match: CG8468 (gene:FBgn0033913 transcript:FBtr0087534)

HSP 1 Score: 73.1738 bits (178), Expect = 6.825e-16
Identity = 31/64 (48.44%), Postives = 48/64 (75.00%), Query Frame = -3

Query:  185 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 376
            + L   V+ G+GF +VY+P+++I+  +FEK R LA G+A+CGSG+GTFV +PL + L+ + GWR
Sbjct:  142 LFLIYGVLGGIGFCMVYIPAVVIIGFYFEKWRALATGVAMCGSGVGTFVFAPLTKILLKS-GWR 204

[Close]

BLAST of SMED30028823 vs. Ensembl Fly
Match: CG8468 (gene:FBgn0033913 transcript:FBtr0087532)

HSP 1 Score: 73.1738 bits (178), Expect = 6.825e-16
Identity = 31/64 (48.44%), Postives = 48/64 (75.00%), Query Frame = -3

Query:  185 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 376
            + L   V+ G+GF +VY+P+++I+  +FEK R LA G+A+CGSG+GTFV +PL + L+ + GWR
Sbjct:  142 LFLIYGVLGGIGFCMVYIPAVVIIGFYFEKWRALATGVAMCGSGVGTFVFAPLTKILLKS-GWR 204

[Close]

BLAST of SMED30028823 vs. Ensembl Fly
Match: CG8468 (gene:FBgn0033913 transcript:FBtr0087533)

HSP 1 Score: 73.1738 bits (178), Expect = 6.825e-16
Identity = 31/64 (48.44%), Postives = 48/64 (75.00%), Query Frame = -3

Query:  185 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 376
            + L   V+ G+GF +VY+P+++I+  +FEK R LA G+A+CGSG+GTFV +PL + L+ + GWR
Sbjct:  142 LFLIYGVLGGIGFCMVYIPAVVIIGFYFEKWRALATGVAMCGSGVGTFVFAPLTKILLKS-GWR 204

[Close]

BLAST of SMED30028823 vs. Ensembl Zebrafish
Match: slc16a12a (solute carrier family 16 member 12a [Source:ZFIN;Acc:ZDB-GENE-080721-24])

HSP 1 Score: 68.1662 bits (165), Expect = 4.507e-14
Identity = 31/106 (29.25%), Postives = 65/106 (61.32%), Query Frame = -3

Query:   59 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSAE 376
            + L   V+ GVGF L Y P+I +V  +F +++ LA GIA+ GSG+GTF+++P ++ L+  + WR A+L++  ++  +  C      ++ +  ++  +++ + K+ +
Sbjct:  164 LYLTLGVLTGVGFALSYTPAIAMVGSYFRQRKALAYGIAMSGSGIGTFILAPAVQLLIEFFSWRGALLILAGLVSHLCVCGALMRPLQSQRGRQNKMDLENGKTVD 269

[Close]

BLAST of SMED30028823 vs. Ensembl Zebrafish
Match: slc16a12a (solute carrier family 16 member 12a [Source:ZFIN;Acc:ZDB-GENE-080721-24])

HSP 1 Score: 67.0106 bits (162), Expect = 9.455e-14
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ GVGF L Y P+I +V  +F +++ LA GIA+ GSG+GTF+++P ++ L+  + WR A
Sbjct:   25 LTLGVLTGVGFALSYTPAIAMVGSYFRQRKALAYGIAMSGSGIGTFILAPAVQLLIEFFSWRGA 88

[Close]

BLAST of SMED30028823 vs. Ensembl Zebrafish
Match: BX511087.3 (solute carrier family 16 member 12a [Source:NCBI gene;Acc:557762])

HSP 1 Score: 65.855 bits (159), Expect = 3.211e-13
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ GVGF L Y P+I +V  +F +++ LA GIA+ GSG+GTF+++P ++ L+  + WR A
Sbjct:  111 LTLGVLTGVGFALSYTPAIAMVGSYFRQRKALAYGIAMSGSGIGTFILAPAVQLLIEFFSWRGA 174

[Close]

BLAST of SMED30028823 vs. Ensembl Zebrafish
Match: slc16a12b (solute carrier family 16 member 12b [Source:NCBI gene;Acc:449947])

HSP 1 Score: 65.4698 bits (158), Expect = 3.304e-13
Identity = 26/60 (43.33%), Postives = 45/60 (75.00%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            ++ G+GF L Y P+I +V ++F +++ LA GIA+ GSG+GTF+++P+++ L+  Y WR A
Sbjct:  128 LLTGLGFALCYTPAIAMVGIYFCERKALAYGIAMSGSGIGTFILAPVVQLLIEHYSWRGA 187

[Close]

BLAST of SMED30028823 vs. Ensembl Zebrafish
Match: BX511087.3 (solute carrier family 16 member 12a [Source:NCBI gene;Acc:557762])

HSP 1 Score: 64.6994 bits (156), Expect = 5.864e-13
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ GVGF L Y P+I +V  +F +++ LA GIA+ GSG+GTF+++P ++ L+  + WR A
Sbjct:  106 LTLGVLTGVGFALSYTPAIAMVGSYFRQRKALAYGIAMSGSGIGTFILAPAVQLLIEFFSWRGA 169

[Close]

BLAST of SMED30028823 vs. Ensembl Xenopus
Match: slc16a12 (solute carrier family 16 member 12 [Source:NCBI gene;Acc:394932])

HSP 1 Score: 68.1662 bits (165), Expect = 4.130e-14
Identity = 39/107 (36.45%), Postives = 68/107 (63.55%), Query Frame = -3

Query:   41 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKK-SAENKVIET 358
            V+ G+GF L Y P+I +V  +FEK++ LA GIA+ GSG+GTF+++P+++ L+  + WR A+L++G  +  +   C+    ++P T KE  L    K+   EN+  ++
Sbjct:  117 VLTGLGFALCYSPAIAMVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVSNL---CVCGALMRPITLKEDSLHYPLKQEQMENEPTQS 220

[Close]

BLAST of SMED30028823 vs. Ensembl Xenopus
Match: atf6b (activating transcription factor 6 beta [Source:Xenbase;Acc:XB-GENE-1013925])

HSP 1 Score: 64.3142 bits (155), Expect = 1.240e-12
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            V  G+G G+VYLP+++ V  +F+K+R LA G++  G+G GTF+++ L+++L    GWR A
Sbjct:  133 VTAGIGSGMVYLPAVVTVGHYFQKRRALAQGLSTTGTGFGTFLITVLLKYLCRELGWRNA 192

[Close]

BLAST of SMED30028823 vs. Ensembl Xenopus
Match: slc16a3 (solute carrier family 16 member 3 [Source:NCBI gene;Acc:493294])

HSP 1 Score: 61.2326 bits (147), Expect = 1.882e-11
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = -3

Query:   53 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKP-KTPKEVDLEVNDKKSAENK 376
            + L + VI G+G  L + PS+I++N +F+K+RPLA G+A  GS +    +SPL + L   +GWR   L++G +LL    CC     ++P + PK+   EV D K  + K
Sbjct:  114 IYLTAGVITGLGLALNFQPSLIMLNRYFDKRRPLANGLAAAGSPVFLCALSPLGQILQYEFGWRGGFLILGGLLLN---CCACGALMRPLEPPKKAVEEVKDTKEIKPK 219

[Close]

BLAST of SMED30028823 vs. Ensembl Xenopus
Match: mad2l1 (mitotic arrest deficient 2 like 1 [Source:Xenbase;Acc:XB-GENE-947153])

HSP 1 Score: 58.9214 bits (141), Expect = 1.107e-10
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = -3

Query:   89 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVD 358
            VI G GF L   PS+I+V  +F KKRP+A G+A+ GS +    ++PL +FL   +GWR +  ++G +LL    CC+     +P  P   D
Sbjct:  118 VIAGFGFSLNLQPSVIVVGKYFLKKRPIANGLAMAGSPVVLSTLAPLNQFLFDKFGWRGSFFILGALLLN---CCVAGALFRPIGPSTTD 204

[Close]

BLAST of SMED30028823 vs. Ensembl Xenopus
Match: slc16a7 (solute carrier family 16 member 7 [Source:NCBI gene;Acc:100127205])

HSP 1 Score: 58.5362 bits (140), Expect = 1.513e-10
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = -3

Query:   41 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEV--DLEVNDKKSAENKVIET 370
            +C  V+ G G      PS+ I+  +F KKRP+A G+A+ GS +    ++PL +FL + +GWR + L++G +LL    CC+  + ++P  PK V  D+E   K    +K  E+
Sbjct:  113 ICIGVMGGFGLAFNLQPSLTIIGKYFFKKRPIANGLAMAGSPVFLSTLAPLNQFLFNQFGWRGSFLILGGLLLN---CCVAGSLMRPIGPKPVKKDIEKAPKDDENHKKKES 221

[Close]

BLAST of SMED30028823 vs. Ensembl Mouse
Match: Slc16a14 (solute carrier family 16 (monocarboxylic acid transporters), member 14 [Source:MGI Symbol;Acc:MGI:1919031])

HSP 1 Score: 68.5514 bits (166), Expect = 3.003e-14
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            V  G+G G+ YLP++++V  +F+K+R LA G++  G+G GTF+M+ L+++L + YGWR A
Sbjct:  134 VAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNA 193

[Close]

BLAST of SMED30028823 vs. Ensembl Mouse
Match: Slc16a12 (solute carrier family 16 (monocarboxylic acid transporters), member 12 [Source:MGI Symbol;Acc:MGI:2147716])

HSP 1 Score: 65.4698 bits (158), Expect = 3.633e-13
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ G+GF L Y P+I +V  +F +++ LA GIA+ GSG+GTF+++P+++ L+  + WR A
Sbjct:  113 LSLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGA 176

[Close]

BLAST of SMED30028823 vs. Ensembl Mouse
Match: Slc16a3 (solute carrier family 16 (monocarboxylic acid transporters), member 3 [Source:MGI Symbol;Acc:MGI:1933438])

HSP 1 Score: 58.9214 bits (141), Expect = 8.149e-11
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = -3

Query:  185 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 376
            + L + VI G+G  L + PS+I++N +F K+RP+A G+A  GS +    +SPL + L   YGWR
Sbjct:  114 IYLTTGVITGLGLALNFQPSLIMLNRYFNKRRPIANGLAAAGSPVFLCALSPLGQLLQDHYGWR 177

[Close]

Query:  185 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 376
            + L + VI G+G  L + PS+I++N +F K+RP+A G+A  GS +    +SPL + L   YGWR
Sbjct:  114 IYLTTGVITGLGLALNFQPSLIMLNRYFNKRRPIANGLAAAGSPVFLCALSPLGQLLQDHYGWR 177

[Close]

Query:  185 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 376
            + L + VI G+G  L + PS+I++N +F K+RP+A G+A  GS +    +SPL + L   YGWR
Sbjct:  114 IYLTTGVITGLGLALNFQPSLIMLNRYFNKRRPIANGLAAAGSPVFLCALSPLGQLLQDHYGWR 177

[Close]

BLAST of SMED30028823 vs. UniProt/SwissProt
Match: sp|Q7RTX9|MOT14_HUMAN (Monocarboxylate transporter 14 OS=Homo sapiens OX=9606 GN=SLC16A14 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.712e-13
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            V  G+G G+ YLP++++V  +F+K+R LA G++  G+G GTF+M+ L+++L + YGWR A
Sbjct:  132 VAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNA 191

[Close]

BLAST of SMED30028823 vs. UniProt/SwissProt
Match: sp|Q8K1C7|MOT14_MOUSE (Monocarboxylate transporter 14 OS=Mus musculus OX=10090 GN=Slc16a14 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.100e-13
Identity = 27/60 (45.00%), Postives = 45/60 (75.00%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            V  G+G G+ YLP++++V  +F+K+R LA G++  G+G GTF+M+ L+++L + YGWR A
Sbjct:  134 VAAGLGSGMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNA 193

[Close]

BLAST of SMED30028823 vs. UniProt/SwissProt
Match: sp|Q6GM59|MOT12_XENLA (Monocarboxylate transporter 12 OS=Xenopus laevis OX=8355 GN=slc16a12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.938e-13
Identity = 29/64 (45.31%), Postives = 46/64 (71.88%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ G+GF L Y P+I +V  +FEK++ LA GIA+ GSG+GTF+++P+++ L+  + WR A
Sbjct:  113 LTLGVLTGLGFALCYSPAIAMVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGA 176

[Close]

BLAST of SMED30028823 vs. UniProt/SwissProt
Match: sp|Q6P2X9|MOT12_XENTR (Monocarboxylate transporter 12 OS=Xenopus tropicalis OX=8364 GN=slc16a12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.700e-13
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            V+ G+GF L Y P+I +V  +FEK++ LA GIA+ GSG+GTF+++P+++ L+  + WR A
Sbjct:  117 VLTGLGFALCYSPAIAMVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGA 176

[Close]

BLAST of SMED30028823 vs. UniProt/SwissProt
Match: sp|Q6ZSM3|MOT12_HUMAN (Monocarboxylate transporter 12 OS=Homo sapiens OX=9606 GN=SLC16A12 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 1.882e-12
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ G+GF L Y P+I +V  +F +++ LA GIA+ GSG+GTF+++P+++ L+  + WR A
Sbjct:  143 LTLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGA 206

[Close]

BLAST of SMED30028823 vs. TrEMBL
Match: A0A0H3YJ01 (Slc16a-11 (Fragment) OS=Schmidtea mediterranea OX=79327 GN=slc16a-11 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.995e-43
Identity = 87/125 (69.60%), Postives = 106/125 (84.80%), Query Frame = -3

Query:    2 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSAENKVIETREGCVIIEIPANE 376
            +ILCSSV+CG+GFGLVYLPSIIIVNVWF+KKR LAMGIAVCGSGLGTFVMSPL+E+L+ST+GW++AMLVIGLILL+M+PCC+TYT+VK K+  E + E N   S +N +  T   C  IEIP+NE
Sbjct:  124 LILCSSVLCGIGFGLVYLPSIIIVNVWFDKKRSLAMGIAVCGSGLGTFVMSPLMEYLISTFGWQLAMLVIGLILLLMIPCCMTYTNVKSKSLIEKEAERNAMDSNDNTMSATE--CEKIEIPSNE 246

[Close]

BLAST of SMED30028823 vs. TrEMBL
Match: A0A0H3YK70 (Slc16a-13 OS=Schmidtea mediterranea OX=79327 GN=slc16a-13 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.657e-35
Identity = 76/120 (63.33%), Postives = 95/120 (79.17%), Query Frame = -3

Query:   17 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSAENKVIETREGCVIIE 376
            +I C+SVICG+GFGL+YLPSI IVN+WF KKR + + I VC  GLGTF+M PLIE+LVSTY W  AML+IGLILLIMVPCCLTY +VK +TPKE+++++ DK+S  N  I  +E   IIE
Sbjct:  120 LIFCTSVICGIGFGLIYLPSIKIVNIWFGKKRSVYICIVVCRIGLGTFIMGPLIEYLVSTYDWMEAMLIIGLILLIMVPCCLTYKNVKLRTPKEIEIKMIDKRSDLNFSIAAKEKFEIIE 239

[Close]

BLAST of SMED30028823 vs. TrEMBL
Match: A0A0H3YIZ7 (Slc16a-6 (Fragment) OS=Schmidtea mediterranea OX=79327 GN=slc16a-6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.096e-24
Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = -3

Query:   71 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKP-KTPKEVDL---EVNDK 376
            +IL SSV+CG+GF L+YLPSI+IVN+WF+KKR  A+GIAVCGSG GTF+ SP IEFL++  GW+ AML+ G ++L++  C  +Y + +   +  EV+    E+N+K
Sbjct:  178 LILSSSVVCGIGFSLIYLPSILIVNMWFDKKRSFAIGIAVCGSGFGTFMFSPFIEFLLTKGGWQQAMLITGSLILVLALCSASYCNFESVNSTSEVEAVKNEINEK 283

[Close]

BLAST of SMED30028823 vs. TrEMBL
Match: A0A0H3YJ05 (Slc16a-16 OS=Schmidtea mediterranea OX=79327 GN=slc16a-16 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.525e-23
Identity = 55/112 (49.11%), Postives = 75/112 (66.96%), Query Frame = -3

Query:   41 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSAENKVIET 376
            + L SS++ G+GFG++YL  ++IVN +FEK+R LA+GIAVCGSGLGTF+  PLI+FL+  YGWR AML+ G IL  ++PC L +  +   T  E     N  K  EN +  T
Sbjct:  134 LFLTSSLLTGIGFGMIYLTCVVIVNNYFEKRRGLAVGIAVCGSGLGTFIFGPLIQFLIELYGWRGAMLIAGGILFNLIPCGLLFQKLPTHTLNEAS---NLNKKKENSIKNT 242

[Close]

BLAST of SMED30028823 vs. TrEMBL
Match: A0A0H3YJ52 (Slc16a-14 OS=Schmidtea mediterranea OX=79327 GN=slc16a-14 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.229e-21
Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = -3

Query:  185 SSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 364
            +SVI G+GFGLVYLPSI+ V+++F++KR  A+G+AVCGSG+GTFV SPLIE+L+ TYGWR
Sbjct:  139 ASVISGLGFGLVYLPSIVTVSIYFKRKRAFAIGLAVCGSGIGTFVFSPLIEYLIETYGWR 198

[Close]

BLAST of SMED30028823 vs. Ensembl Cavefish
Match: slc16a12a (uncharacterized LOC103025054 [Source:NCBI gene;Acc:103025054])

HSP 1 Score: 69.707 bits (169), Expect = 1.159e-14
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   ++ G+GF L Y P++ +V  +F +++ LA GIA+ GSG+GTFV++P+++ L+  Y WR A
Sbjct:  114 LSLGILTGLGFALCYTPAVAMVGSYFSERKALAYGIAMSGSGIGTFVLAPVVQLLIELYSWRGA 177

[Close]

BLAST of SMED30028823 vs. Ensembl Cavefish
Match: slc16a12b (solute carrier family 16 member 12 [Source:NCBI gene;Acc:111192338])

HSP 1 Score: 67.781 bits (164), Expect = 5.376e-14
Identity = 28/64 (43.75%), Postives = 46/64 (71.88%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ G+GF L Y P+I +V ++F +++ LA GIA+ GSG+GTF+++P+++ L+  Y WR A
Sbjct:  114 LSLGVLTGLGFALCYTPAIAMVGIYFCERKSLAYGIAMSGSGIGTFILAPVVQMLIEHYSWRGA 177

[Close]

BLAST of SMED30028823 vs. Ensembl Cavefish
Match: slc16a12b (solute carrier family 16 member 12 [Source:NCBI gene;Acc:111192338])

HSP 1 Score: 67.781 bits (164), Expect = 5.615e-14
Identity = 28/64 (43.75%), Postives = 46/64 (71.88%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ G+GF L Y P+I +V ++F +++ LA GIA+ GSG+GTF+++P+++ L+  Y WR A
Sbjct:  114 LSLGVLTGLGFALCYTPAIAMVGIYFCERKSLAYGIAMSGSGIGTFILAPVVQMLIEHYSWRGA 177

[Close]

BLAST of SMED30028823 vs. Ensembl Cavefish
Match: slc16a12b (solute carrier family 16 member 12 [Source:NCBI gene;Acc:111192338])

HSP 1 Score: 67.3958 bits (163), Expect = 6.062e-14
Identity = 28/64 (43.75%), Postives = 46/64 (71.88%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ G+GF L Y P+I +V ++F +++ LA GIA+ GSG+GTF+++P+++ L+  Y WR A
Sbjct:  114 LSLGVLTGLGFALCYTPAIAMVGIYFCERKSLAYGIAMSGSGIGTFILAPVVQMLIEHYSWRGA 177

[Close]

BLAST of SMED30028823 vs. Ensembl Cavefish
Match: slc16a12a (uncharacterized LOC103025054 [Source:NCBI gene;Acc:103025054])

HSP 1 Score: 66.6254 bits (161), Expect = 1.291e-13
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   ++ G+GF L Y P++ +V  +F +++ LA GIA+ GSG+GTFV++P+++ L+  Y WR A
Sbjct:  112 LSLGILTGLGFALCYTPAVAMVGSYFSERKALAYGIAMSGSGIGTFVLAPVVQLLIELYSWRGA 175

[Close]

BLAST of SMED30028823 vs. Ensembl Sea Lamprey
Match: SLC16A12 (solute carrier family 16 member 12 [Source:HGNC Symbol;Acc:HGNC:23094])

HSP 1 Score: 69.3218 bits (168), Expect = 3.177e-15
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 358
            V  G GF L Y PSI++V  +F ++R LA G+A+ GSG+GTF+++PL+++L+  + WR A
Sbjct:  110 VFAGFGFSLCYSPSIVMVTKYFRRRRALATGLAMSGSGVGTFLLAPLVQYLLDVFSWRGA 169

[Close]

BLAST of SMED30028823 vs. Ensembl Sea Lamprey
Match: SLC16A12 (solute carrier family 16 member 12 [Source:HGNC Symbol;Acc:HGNC:23094])

HSP 1 Score: 62.3882 bits (150), Expect = 7.709e-13
Identity = 28/61 (45.90%), Postives = 45/61 (73.77%), Query Frame = -3

Query:  179 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLI-EFLVSTYGWRVA 358
            ++ G+GF L Y PSI IV+ +F++ R LA G+A+ G+G+GTFV++P++ + L+  Y WR A
Sbjct:  117 LMAGLGFALCYSPSIAIVSRYFQRHRLLATGLAMSGNGVGTFVLAPVVQQLLIEVYAWRGA 177

[Close]

BLAST of SMED30028823 vs. Ensembl Sea Lamprey
Match: si:ch211-234h8.7 (si:ch211-234h8.7 [Source:ZFIN;Acc:ZDB-GENE-061009-16])

HSP 1 Score: 62.003 bits (149), Expect = 9.363e-13
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = -3

Query:   35 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSAENKVIETRE 370
            L + VI G+G  L + PS+I++  +F K+RPLA G+A  GS +    +SPL + LV +YGWR   L++G +LL    CC     ++P  P + D      +S        RE
Sbjct:  117 LTAGVITGMGLALNFQPSLIMLGRYFNKRRPLANGLAAAGSPVFLTTLSPLGQMLVKSYGWRGGFLILGGLLLN---CCACGAVMRPLVPPKEDAGSGVAESPSPGTAPHRE 225

[Close]

BLAST of SMED30028823 vs. Ensembl Sea Lamprey
Match: ENSPMAT00000001631.1 (pep scaffold:Pmarinus_7.0:GL477961:12469:26731:1 gene:ENSPMAG00000001470.1 transcript:ENSPMAT00000001631.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 62.003 bits (149), Expect = 1.181e-12
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = -3

Query:  179 GVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 349
            G G+ +V+ PSI  ++ +F+K+R LA+GIA  G G+ +F  SPL + LV TY WR A
Sbjct:  115 GFGWAMVFSPSISTLSKYFDKRRSLALGIAFSGVGMSSFAFSPLFQMLVETYTWRGA 171

[Close]

BLAST of SMED30028823 vs. Ensembl Sea Lamprey
Match: zgc:165507 (solute carrier family 16 member 7 [Source:HGNC Symbol;Acc:HGNC:10928])

HSP 1 Score: 56.6102 bits (135), Expect = 8.284e-11
Identity = 30/90 (33.33%), Postives = 53/90 (58.89%), Query Frame = -3

Query:  101 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTP 370
             C  VI G+G      P++ I+  +F KKRP+A GI++ GS +G   ++PL + L++ +GWR + L++  +L     CC+  + ++P  P
Sbjct:  114 FCIGVIGGLGLAFNLQPALTIIGKYFYKKRPIANGISMAGSPVGLSTIAPLNQVLINNFGWRGSFLILAALLFN---CCVAGSLMRPVGP 200

[Close]

BLAST of SMED30028823 vs. Ensembl Yeast
Match: MCH2 (Protein with similarity to mammalian monocarboxylate permeases; monocarboxylate permeases are involved in transport of monocarboxylic acids across the plasma membrane but mutant is not deficient in monocarboxylate transport [Source:SGD;Acc:S000001704])

HSP 1 Score: 50.8322 bits (120), Expect = 6.178e-9
Identity = 20/51 (39.22%), Postives = 30/51 (58.82%), Query Frame = -3

Query:  224 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMS 376
            + L   V+ G G   +++PS+ ++ +WF  KR LA GI   GSGLG  V +
Sbjct:  137 IYLTQGVLIGFGLAFIFIPSVTLIPLWFRNKRSLASGIGTAGSGLGGIVFN 187

[Close]

BLAST of SMED30028823 vs. Ensembl Nematostella
Match: EDO46666 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RPD0])

HSP 1 Score: 65.0846 bits (157), Expect = 1.480e-13
Identity = 28/58 (48.28%), Postives = 42/58 (72.41%), Query Frame = -3

Query:  185 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 358
            ++ GVG GL + PSII++  +F K+ PLA GIA  GSG+G  + +P I+FL+S +GW+
Sbjct:  124 LLWGVGSGLSFTPSIIVLGQYFRKRFPLANGIASSGSGIGGLLAAPFIQFLLSNFGWQ 181

[Close]

BLAST of SMED30028823 vs. Ensembl Nematostella
Match: EDO49501 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RGB3])

HSP 1 Score: 62.003 bits (149), Expect = 2.075e-12
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = -3

Query:  185 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 358
            ++ G+G  L YLP++++V  +FEKKR LA GIA  G  +G  +++PL + LV   GWR
Sbjct:  174 ILVGIGSSLSYLPALVMVAFYFEKKRSLATGIAAAGGNIGALILAPLQQTLVEHIGWR 231

[Close]

BLAST of SMED30028823 vs. Ensembl Nematostella
Match: EDO41364 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S4Q5])

HSP 1 Score: 55.0694 bits (131), Expect = 2.193e-10
Identity = 26/85 (30.59%), Postives = 54/85 (63.53%), Query Frame = -3

Query:   95 GVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKE 349
            G+G  + Y  S++++N +F+K+  LA G+A+ G+G+G  V++  + +L+ +YGWR A+ ++ ++ + +  C   +   KP+TP  
Sbjct:   62 GLGASMSYFGSLLVLNSYFDKRLSLAYGVALAGAGVGVSVVATSMSYLIGSYGWRFAVRLLAILGVFVFLCGQLF---KPQTPAR 143

[Close]

BLAST of SMED30028823 vs. Ensembl Nematostella
Match: EDO39975 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7S8F8])

HSP 1 Score: 54.299 bits (129), Expect = 9.721e-10
Identity = 37/107 (34.58%), Postives = 54/107 (50.47%), Query Frame = -3

Query:   38 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSAENKVIETR 358
            V+ G+G  + YLP++  +  WF ++  L  GI   GSG GT  M PL++  V+  GW     ++  +LL+     L Y  V PK+P E+       K AE K  E R
Sbjct:  115 VLWGIGSSMCYLPTLRALPYWFRRRISLTNGIVTAGSGFGTIAMGPLMQLTVTYLGWAHTTRILAGVLLLCAISALLYR-VPPKSPIEM-------KMAEEKRHEKR 213

[Close]

BLAST of SMED30028823 vs. Ensembl Nematostella
Match: EDO38356 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SD36])

HSP 1 Score: 51.9878 bits (123), Expect = 5.741e-9
Identity = 29/120 (24.17%), Postives = 62/120 (51.67%), Query Frame = -3

Query:   20 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSAE-NKVIETREGCVII 376
            +    SV+ G+G  L Y+  +  V  +FEK+R LA+G    G  +G     P+++ L+  YGWR+   ++  ++ + +   LT+          V +E++++++ +  K  ++R  C ++
Sbjct:  518 IFFSYSVLYGLGSCLFYMSCVYAVAEYFEKRRGLALGFLTSGISVGVLAQGPVLQVLLDAYGWRITFRIMAGVVGLALFLVLTFDPNVQNATARVPVEISEEQTDDFTKPQQSRGKCALV 637

HSP 2 Score: 49.2914 bits (116), Expect = 5.157e-8
Identity = 22/64 (34.38%), Postives = 35/64 (54.69%), Query Frame = -3

Query:  185 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 376
            +    SV+ G+G  L Y+  +  V  +FEK+R LA+G    G  +G     P+++ L+  YGWR
Sbjct:  113 IFFSYSVLYGLGSCLFYMSCVYAVAEYFEKRRGLALGFLTSGISVGVLAQGPVLQVLLDAYGWR 176

[Close]

BLAST of SMED30028823 vs. Ensembl Medaka
Match: ENSORLT00000025268.2 (solute carrier family 16 member 12 [Source:NCBI gene;Acc:101161384])

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-14
Identity = 29/64 (45.31%), Postives = 46/64 (71.88%), Query Frame = -3

Query:  179 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVA 370
            L   V+ G+GF L Y P+I +V  +F++++ LA GIA+ GSG+GTFV++P+++ L+  Y WR A
Sbjct:  114 LTMGVLTGLGFALCYTPAIALVGCYFQQRKALAYGIAMSGSGIGTFVLAPVLQLLIELYSWRGA 177

[Close]

BLAST of SMED30028823 vs. Ensembl Medaka
Match: slc16a12a (monocarboxylate transporter 12-B-like [Source:NCBI gene;Acc:101175502])

HSP 1 Score: 65.4698 bits (158), Expect = 2.870e-13
Identity = 44/120 (36.67%), Postives = 73/120 (60.83%), Query Frame = -3

Query:    8 VICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSA---ENKVIETREGCVIIEIPA 358
            VI G+GF L + P+I IV  +F +++ LA GIA+ GSG+GTF+++P ++ L+  Y WR A+L++G I+  +   C+    ++P      D+EV   K +   +N  ++TRE    I IP+
Sbjct:  123 VITGLGFALSFTPAIAIVGKYFVERKALAYGIALSGSGIGTFLLAPAVQLLIEHYSWRGALLILGGIVSNL---CVCGALMRPLE----DMEVQKTKPSSRCQNFCLKTREYFGFILIPS 235

[Close]

BLAST of SMED30028823 vs. Ensembl Medaka
Match: si:dkey-246g23.4 (monocarboxylate transporter 2 [Source:NCBI gene;Acc:101159501])

HSP 1 Score: 60.8474 bits (146), Expect = 1.311e-11
Identity = 29/105 (27.62%), Postives = 65/105 (61.90%), Query Frame = -3

Query:   35 GVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSAENKVIETRE 349
            G G+ L + P++ ++ ++F+K+RP+A  +A  G  + TF+++P+ + L++++ WR A+L++G + L +  C L    +K    KE+  E +++++++      RE
Sbjct:  127 GFGYALTWTPTVTMLGMYFDKRRPVANALASAGECILTFILTPMFQLLINSFSWRGALLIMGALQLNLCVCGLLLRPLKSTRDKELYTEESNQETSKKYSTSLRE 231

[Close]

BLAST of SMED30028823 vs. Ensembl Medaka
Match: slc16a7 (monocarboxylate transporter 2 [Source:NCBI gene;Acc:101167208])

HSP 1 Score: 60.077 bits (144), Expect = 2.194e-11
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = -3

Query:  185 LCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 370
            LC  VI G G      P++ I+  +F+ KRPLA G+A+ GS +   +++PL +FL  +YGWR
Sbjct:  114 LCVGVIGGFGLAFNLQPALTIIGTYFQAKRPLANGLAMTGSPVFLSILAPLNQFLFDSYGWR 175

[Close]

BLAST of SMED30028823 vs. Ensembl Medaka
Match: slc16a3 (solute carrier family 16 member 3 [Source:NCBI gene;Acc:101173471])

HSP 1 Score: 58.9214 bits (141), Expect = 5.944e-11
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3

Query:   62 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKT-PKEVDLEVNDKKSA 376
            + L + VI G+G  L + PS+I++N +F +KRPLA G++  GS +    +SPL + L   YGWR   L++G ILL    CC+    +KP   PK+V  + ++K+ +
Sbjct:  114 IYLTTGVITGLGLALNFQPSLIMLNRYFSEKRPLANGLSAAGSPVALCCLSPLGQVLQYHYGWRGGFLILGGILLN---CCVCGALMKPLVDPKKVKKQDHNKEQS 216

[Close]

BLAST of SMED30028823 vs. Planmine SMEST
Match: SMESG000008033.1 (SMESG000008033.1)

HSP 1 Score: 105.145 bits (261), Expect = 1.483e-27
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = -3

Query:  188 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGW 376
            +IL  SVICG+GFGLVYLPSIIIVNVWF+K+R LA+GI++CGSGLGTF +SPL+E L+ +YGW
Sbjct:   82 LILNFSVICGIGFGLVYLPSIIIVNVWFDKRRSLALGISLCGSGLGTFSISPLLELLILSYGW 144

[Close]

BLAST of SMED30028823 vs. Planmine SMEST
Match: SMESG000006948.1 (SMESG000006948.1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.763e-25
Identity = 41/60 (68.33%), Postives = 54/60 (90.00%), Query Frame = -3

Query:  185 SSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWR 364
            +SVI G+GFGLVYLPSI+ V+++F++KR  A+G+AVCGSG+GTFV SPLIE+L+ TYGWR
Sbjct:  138 ASVISGLGFGLVYLPSIVTVSIYFKRKRAFAIGLAVCGSGIGTFVFSPLIEYLIETYGWR 197

[Close]

BLAST of SMED30028823 vs. Planmine SMEST
Match: SMESG000008037.1 (SMESG000008037.1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.588e-22
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = -3

Query:   56 VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGWRVAXXXXXXXXXXXVPCCLTYTDVKPKTPKEVDLEVNDKKSAEN 376
            V+L +SV+CG+GFGL+YLPSI IVNVWFE  +PLA+GIAV GSGLGTF  S + E+L    G +  ML+ G ILL+++PC L Y  +  +     D E + + + EN
Sbjct:   82 VVLNTSVLCGIGFGLIYLPSIAIVNVWFENVKPLAIGIAVSGSGLGTFAFSLIFEYLPIIVGLKYTMLITGGILLLLLPCSLIYRPIPCQ-----DNENSTRNTLEN 183

[Close]

BLAST of SMED30028823 vs. Planmine SMEST
Match: SMESG000077590.1 (SMESG000077590.1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.048e-16
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = -3

Query:  188 ILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGW 373
            +LC  V  G+GFGL+YLP+I IV  WF +KR +A+GIA+CGSG+G+ ++S L+  L+    W
Sbjct:  219 VLCFGVFSGIGFGLMYLPAIAIVAHWFNQKRAVAIGIALCGSGIGSCILSFLLPSLIEWVQW 280

[Close]

BLAST of SMED30028823 vs. Planmine SMEST
Match: SMESG000077590.1 (SMESG000077590.1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.182e-16
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = -3

Query:  188 ILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVMSPLIEFLVSTYGW 373
            +LC  V  G+GFGL+YLP+I IV  WF +KR +A+GIA+CGSG+G+ ++S L+  L+    W
Sbjct:  219 VLCFGVFSGIGFGLMYLPAIAIVAHWFNQKRAVAIGIALCGSGIGSCILSFLLPSLIEWVQW 280

The following BLAST results are available for this feature:

BLAST of SMED30028823 vs. Ensembl Human
BLAST of SMED30028823 vs. Ensembl Celegans
BLAST of SMED30028823 vs. Ensembl Fly
BLAST of SMED30028823 vs. Ensembl Zebrafish
BLAST of SMED30028823 vs. Ensembl Xenopus
BLAST of SMED30028823 vs. Ensembl Mouse
BLAST of SMED30028823 vs. UniProt/SwissProt
BLAST of SMED30028823 vs. TrEMBL
BLAST of SMED30028823 vs. Ensembl Cavefish
BLAST of SMED30028823 vs. Ensembl Sea Lamprey
BLAST of SMED30028823 vs. Ensembl Yeast
BLAST of SMED30028823 vs. Ensembl Nematostella
BLAST of SMED30028823 vs. Ensembl Medaka
BLAST of SMED30028823 vs. Planmine SMEST

BLAST of SMED30028823 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SLC16A14	3.565e-14	45.00	solute carrier family 16 member 14 [Source:HGNC Sy...	[more]
SLC16A14	4.051e-14	45.00	solute carrier family 16 member 14 [Source:HGNC Sy...	[more]
SLC16A14	4.163e-14	45.00	solute carrier family 16 member 14 [Source:HGNC Sy...	[more]
SLC16A12	3.920e-13	42.19	solute carrier family 16 member 12 [Source:HGNC Sy...	[more]
SLC16A3	4.376e-11	43.75	solute carrier family 16 member 3 [Source:HGNC Sym...	[more]

BLAST of SMED30028823 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 5


Match Name	E-value	Identity	Description
mct-6	1.052e-17	50.00	MonoCarboxylate Transporter family [Source:UniPro...	[more]
mct-4	3.926e-14	41.27	MonoCarboxylate Transporter family [Source:UniPro...	[more]
mct-4	6.504e-14	41.27	MonoCarboxylate Transporter family [Source:UniPro...	[more]
mct-4	7.340e-14	41.27	MonoCarboxylate Transporter family [Source:UniPro...	[more]
mct-4	7.340e-14	41.27	MonoCarboxylate Transporter family [Source:UniPro...	[more]

BLAST of SMED30028823 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Mct1	5.927e-17	64.71	gene:FBgn0023549 transcript:FBtr0342765	[more]
Mct1	5.927e-17	64.71	gene:FBgn0023549 transcript:FBtr0070393	[more]
CG8468	6.825e-16	48.44	gene:FBgn0033913 transcript:FBtr0087534	[more]
CG8468	6.825e-16	48.44	gene:FBgn0033913 transcript:FBtr0087532	[more]
CG8468	6.825e-16	48.44	gene:FBgn0033913 transcript:FBtr0087533	[more]

BLAST of SMED30028823 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
slc16a12a	4.507e-14	29.25	solute carrier family 16 member 12a [Source:ZFIN;A...	[more]
slc16a12a	9.455e-14	43.75	solute carrier family 16 member 12a [Source:ZFIN;A...	[more]
BX511087.3	3.211e-13	43.75	solute carrier family 16 member 12a [Source:NCBI g...	[more]
slc16a12b	3.304e-13	43.33	solute carrier family 16 member 12b [Source:NCBI g...	[more]
BX511087.3	5.864e-13	43.75	solute carrier family 16 member 12a [Source:NCBI g...	[more]

BLAST of SMED30028823 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 5


Match Name	E-value	Identity	Description
slc16a12	4.130e-14	36.45	solute carrier family 16 member 12 [Source:NCBI ge...	[more]
atf6b	1.240e-12	43.33	activating transcription factor 6 beta [Source:Xen...	[more]
slc16a3	1.882e-11	37.61	solute carrier family 16 member 3 [Source:NCBI gen...	[more]
mad2l1	1.107e-10	38.89	mitotic arrest deficient 2 like 1 [Source:Xenbase;...	[more]
slc16a7	1.513e-10	34.82	solute carrier family 16 member 7 [Source:NCBI gen...	[more]

BLAST of SMED30028823 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 5


Match Name	E-value	Identity	Description
Slc16a14	3.003e-14	45.00	solute carrier family 16 (monocarboxylic acid tran...	[more]
Slc16a12	3.633e-13	42.19	solute carrier family 16 (monocarboxylic acid tran...	[more]
Slc16a3	8.149e-11	42.19	solute carrier family 16 (monocarboxylic acid tran...	[more]
Slc16a3	8.149e-11	42.19	solute carrier family 16 (monocarboxylic acid tran...	[more]
Slc16a3	8.149e-11	42.19	solute carrier family 16 (monocarboxylic acid tran...	[more]

BLAST of SMED30028823 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 5


Match Name	E-value	Identity	Description
sp\|Q7RTX9\|MOT14_HUMAN	1.712e-13	45.00	Monocarboxylate transporter 14 OS=Homo sapiens OX=...	[more]
sp\|Q8K1C7\|MOT14_MOUSE	2.100e-13	45.00	Monocarboxylate transporter 14 OS=Mus musculus OX=...	[more]
sp\|Q6GM59\|MOT12_XENLA	2.938e-13	45.31	Monocarboxylate transporter 12 OS=Xenopus laevis O...	[more]
sp\|Q6P2X9\|MOT12_XENTR	3.700e-13	46.67	Monocarboxylate transporter 12 OS=Xenopus tropical...	[more]
sp\|Q6ZSM3\|MOT12_HUMAN	1.882e-12	42.19	Monocarboxylate transporter 12 OS=Homo sapiens OX=...	[more]

BLAST of SMED30028823 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0H3YJ01	2.995e-43	69.60	Slc16a-11 (Fragment) OS=Schmidtea mediterranea OX=...	[more]
A0A0H3YK70	7.657e-35	63.33	Slc16a-13 OS=Schmidtea mediterranea OX=79327 GN=sl...	[more]
A0A0H3YIZ7	4.096e-24	51.89	Slc16a-6 (Fragment) OS=Schmidtea mediterranea OX=7...	[more]
A0A0H3YJ05	6.525e-23	49.11	Slc16a-16 OS=Schmidtea mediterranea OX=79327 GN=sl...	[more]
A0A0H3YJ52	1.229e-21	68.33	Slc16a-14 OS=Schmidtea mediterranea OX=79327 GN=sl...	[more]

BLAST of SMED30028823 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 5


Match Name	E-value	Identity	Description
slc16a12a	1.159e-14	42.19	uncharacterized LOC103025054 [Source:NCBI gene;Acc...	[more]
slc16a12b	5.376e-14	43.75	solute carrier family 16 member 12 [Source:NCBI ge...	[more]
slc16a12b	5.615e-14	43.75	solute carrier family 16 member 12 [Source:NCBI ge...	[more]
slc16a12b	6.062e-14	43.75	solute carrier family 16 member 12 [Source:NCBI ge...	[more]
slc16a12a	1.291e-13	42.19	uncharacterized LOC103025054 [Source:NCBI gene;Acc...	[more]

BLAST of SMED30028823 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 5


Match Name	E-value	Identity	Description
SLC16A12	3.177e-15	46.67	solute carrier family 16 member 12 [Source:HGNC Sy...	[more]
SLC16A12	7.709e-13	45.90	solute carrier family 16 member 12 [Source:HGNC Sy...	[more]
si:ch211-234h8.7	9.363e-13	35.71	si:ch211-234h8.7 [Source:ZFIN;Acc:ZDB-GENE-061009-...	[more]
ENSPMAT00000001631.1	1.181e-12	47.37	pep scaffold:Pmarinus_7.0:GL477961:12469:26731:1 g...	[more]
zgc:165507	8.284e-11	33.33	solute carrier family 16 member 7 [Source:HGNC Sym...	[more]

BLAST of SMED30028823 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 1


Match Name	E-value	Identity	Description
MCH2	6.178e-9	39.22	Protein with similarity to mammalian monocarboxyla...	[more]

BLAST of SMED30028823 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 5


Match Name	E-value	Identity	Description
EDO46666	1.480e-13	48.28	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO49501	2.075e-12	44.83	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO41364	2.193e-10	30.59	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO39975	9.721e-10	34.58	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]
EDO38356	5.741e-9	24.17	Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7...	[more]

BLAST of SMED30028823 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 5


Match Name	E-value	Identity	Description
ENSORLT00000025268.2	2.271e-14	45.31	solute carrier family 16 member 12 [Source:NCBI ge...	[more]
slc16a12a	2.870e-13	36.67	monocarboxylate transporter 12-B-like [Source:NCBI...	[more]
si:dkey-246g23.4	1.311e-11	27.62	monocarboxylate transporter 2 [Source:NCBI gene;Ac...	[more]
slc16a7	2.194e-11	41.94	monocarboxylate transporter 2 [Source:NCBI gene;Ac...	[more]
slc16a3	5.944e-11	37.74	solute carrier family 16 member 3 [Source:NCBI gen...	[more]

BLAST of SMED30028823 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5


Match Name	E-value	Identity	Description
SMESG000008033.1	1.483e-27	73.02	SMESG000008033.1	[more]
SMESG000006948.1	3.763e-25	68.33	SMESG000006948.1	[more]
SMESG000008037.1	7.588e-22	50.47	SMESG000008037.1	[more]
SMESG000077590.1	7.048e-16	50.00	SMESG000077590.1	[more]
SMESG000077590.1	7.182e-16	50.00	SMESG000077590.1	[more]

Analyses

This transcript is derived from or has results from the following analyses


Analysis Name	Date Performed
Embryonic Stages	2016-07-25
Schmidtea mediterranea smed_20140614 BLASTX Human e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99	2016-08-08
Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL	2020-05-01
Schmidtea mediterranea Sexual smed_20140614 transcriptome	2016-07-25
Schmidtea mediteranean smed_20140614 Interproscan	2020-05-01
Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99	2020-05-08
Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST	2020-05-08

Sequences

The following sequences are available for this feature:

transcript sequence
protein sequence

transcript sequence

>SMED30028823 ID=SMED30028823|Name=SMED30028823|organism=Schmidtea mediterranea sexual|type=transcript|length=378bp
CCTCATTAGCTGGAATTTCAATTATTACACACCCTTCTCTAGTCTCAATT
ACTTTATTTTCAGCCGATTTCTTGTCGTTTACTTCTAAATCTACTTCTTT
TGGAGTTTTTGGTTTCACGTCTGTGTATGTTAAACAGCACGGAACCATGA
TTAATAGAATCAATCCAATTACTAACATAGCTACCCTCCAACCGTATGTT
GATACAAGAAATTCGATTAAAGGACTCATAACAAACGTTCCTAGTCCAGA
TCCACAAACCGCTATACCCATTGCTAAAGGTCTTTTCTTTTCAAACCAAA
CGTTGACAATAATTATTGAAGGCAAATAGACTAAACCAAATCCAACTCCA
CAGATGACCGATGAGCAAAGAATAACGA

protein sequence of SMED30028823-orf-1

>SMED30028823-orf-1 ID=SMED30028823-orf-1|Name=SMED30028823-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=125bp
VILCSSVICGVGFGLVYLPSIIIVNVWFEKKRPLAMGIAVCGSGLGTFVM
SPLIEFLVSTYGWRVAMLVIGLILLIMVPCCLTYTDVKPKTPKEVDLEVN
DKKSAENKVIETREGCVIIEIPANE

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **Planarian Anatomy**
Term	Definition
PLANA:0002089	reproductive organ

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **cellular component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **biological process**
Term	Definition
GO:0055085	transmembrane transport

Main menu

SMED30028823

Zeng et. al., 2018

Overview

Single cell RNA-seq of pluripotent neoblasts and its early progenies

Explore this single cell expression dataset with our NB Cluster Shiny App

Davies et. al., 2017

PAGE et. al., 2020

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE

PAGE Curations: 2

Owlery

blazegraph-runner