Intermediate filament protein
|
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30028789 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 6
Homology
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 138.658 bits (348), Expect = 4.322e-34 Identity = 158/529 (29.87%), Postives = 263/529 (49.72%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIR---LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNE----RNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
R +EK ++Q+LN+RLA YI++VR LE +N L + E +E I+A YE E+ +K LD R+ L +++K+ E+ E + Q ++ L L+ E + LE E + +++L + + L E + + +E+ +Q+ K+E+DF K+ + E++E L D+ + R+F S + +L+EL+ +++ ++E + +LE ++ K+ R S+ R V + H L++ IR L QLS L+ + EAK LE L R R + + E E ++R+ R Q +LD E+Q ++D+KL+L++EI AYRKLLEGEE R LR + + S G + S+T G ++ K E R++ H RT+ G V + E +GKF+ L N +D+ + ++ I+ + D ++ Y P LK GQ + IW+ G T S DL + N WG G + TAL+N + EE A
Sbjct: 28 RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDN-GKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA---RMQQQLD----EYQELLDIKLALDMEIHAYRKLLEGEEER--LR-LSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKLESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQ-IKRQNGDDPLLTYRFPPKFTLKA-GQ--VVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 139.043 bits (349), Expect = 5.140e-34 Identity = 158/529 (29.87%), Postives = 263/529 (49.72%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIR---LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNE----RNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
R +EK ++Q+LN+RLA YI++VR LE +N L + E +E I+A YE E+ +K LD R+ L +++K+ E+ E + Q ++ L L+ E + LE E + +++L + + L E + + +E+ +Q+ K+E+DF K+ + E++E L D+ + R+F S + +L+EL+ +++ ++E + +LE ++ K+ R S+ R V + H L++ IR L QLS L+ + EAK LE L R R + + E E ++R+ R Q +LD E+Q ++D+KL+L++EI AYRKLLEGEE R LR + + S G + S+T G ++ K E R++ H RT+ G V + E +GKF+ L N +D+ + ++ I+ + D ++ Y P LK GQ + IW+ G T S DL + N WG G + TAL+N + EE A
Sbjct: 28 RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDN-GKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA---RMQQQLD----EYQELLDIKLALDMEIHAYRKLLEGEEER--LR-LSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKLESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQ-IKRQNGDDPLLTYRFPPKFTLKA-GQ--VVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 139.043 bits (349), Expect = 6.260e-34 Identity = 158/529 (29.87%), Postives = 263/529 (49.72%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIR---LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNE----RNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
R +EK ++Q+LN+RLA YI++VR LE +N L + E +E I+A YE E+ +K LD R+ L +++K+ E+ E + Q ++ L L+ E + LE E + +++L + + L E + + +E+ +Q+ K+E+DF K+ + E++E L D+ + R+F S + +L+EL+ +++ ++E + +LE ++ K+ R S+ R V + H L++ IR L QLS L+ + EAK LE L R R + + E E ++R+ R Q +LD E+Q ++D+KL+L++EI AYRKLLEGEE R LR + + S G + S+T G ++ K E R++ H RT+ G V + E +GKF+ L N +D+ + ++ I+ + D ++ Y P LK GQ + IW+ G T S DL + N WG G + TAL+N + EE A
Sbjct: 28 RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDN-GKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA---RMQQQLD----EYQELLDIKLALDMEIHAYRKLLEGEEER--LR-LSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKLESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQ-IKRQNGDDPLLTYRFPPKFTLKA-GQ--VVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNA (lamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]) HSP 1 Score: 136.732 bits (343), Expect = 3.008e-33 Identity = 156/526 (29.66%), Postives = 261/526 (49.62%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIR---LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNE----RNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNE 1684
R +EK ++Q+LN+RLA YI++VR LE +N L + E +E I+A YE E+ +K LD R+ L +++K+ E+ E + Q ++ L L+ E + LE E + +++L + + L E + + +E+ +Q+ K+E+DF K+ + E++E L D+ + R+F S + +L+EL+ +++ ++E + +LE ++ K+ R S+ R V + H L++ IR L QLS L+ + EAK LE L R R + + E E ++R+ R Q +LD E+Q ++D+KL+L++EI AYRKLLEGEE R LR + + S G + S+T G ++ K E R++ H RT+ G V + E +GKF+ L N +D+ + ++ I+ + D ++ Y P LK GQ + IW+ G T S DL + N WG G + TAL+N + E
Sbjct: 28 RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHETRLVEIDN-GKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA---RMQQQLD----EYQELLDIKLALDMEIHAYRKLLEGEEER--LR-LSPSPTSQRSRGRASSHSSQTQGGGSVTKKRKLESTESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQ-IKRQNGDDPLLTYRFPPKFTLKA-GQ--VVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGE 536
BLAST of Intermediate filament protein vs. Ensembl Human
Match: LMNB2 (lamin B2 [Source:HGNC Symbol;Acc:HGNC:6638]) HSP 1 Score: 117.472 bits (293), Expect = 5.849e-27 Identity = 144/564 (25.53%), Postives = 250/564 (44.33%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKD-----SHDNEMKELAALAYRDSTAENR-DFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPR----EGVESIHLKEENIRLKN---QLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFE----SERDKLRSDLQRTQDELDSI-------MKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKT-------------------AGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKG----NRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTT 1714
R +EK E+++LN+RLA+YI++VR LE +N RL +++ E +E I+ALYE E+ +++LDE R+ L +I KL +L E + + + + Q ++ L E E+ LE + + +++ D + L++ET+ + E+ QS ++E+DF K + + L DS+ + DF +M +L EL+ ++D ++ + +LE + K+ + SS + LKE +RL++ QLS L+ + E + I + E ERDK R L + E+ + + E+Q ++D+KL+L++EI AYRKLLEGEE R L + + + +G + + + Q +A G+V I E +GKF+ L+N KD+ + ++ I+ + I Y+ IL+ GQ + +W+ G + P S + ++WGTG T L+N EE A T K +
Sbjct: 43 RLQEKEELRELNDRLAHYIDRVRALELENDRLLLKISEKEEVTTREVSGIKALYESELADARRVLDETARERARLQIEIGKLRAELDEVNKSAKKREGELTVAQGRVKDLESLFHRSEVELAAALSDKRGLESDVAELRAQLAKAEDGHAVAKKQLEKETLMRVDLENRCQSLQEELDFRKSVFEEEVRETRRRHERRLVEVDSSRQQEYDF---KMAQALEELRSQHDEQVRLYKLELEQTYQAKLDSAKLSSDQNDKAASAAREELKEARMRLESLSYQLSGLQKQASAAEDR------------------IRELEEAMAGERDKFRKMLDAKEQEMTEMRDVMQQQLAEYQELLDVKLALDMEINAYRKLLEGEEERLKLSPSPSSRVTVSRATSSSSGSLSATGRLGRSKRKRLEVEEPLGSGPSVLGTGTGGSGGFHLAQQASASGSVSIEEIDLEGKFVQLKNNSDKDQSLGNWR-IKRQVLEGEEIAYKFTPKYILRA-GQ--MVTVWAAGAGVAHSPP-STLVWKGQSSWGTGESFRTVLVNADGEEVAMRTVKKS 580
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 323.168 bits (827), Expect = 1.368e-102 Identity = 218/539 (40.45%), Postives = 344/539 (63.82%), Query Frame = 2
Query: 101 SGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGK-KDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSA--NWGTGTHIFTALLNKSNEERATHTQK 1708
SGA G S + S+ + REREK+EM DLN+RLA+YIEKVRFLEAQN++L +L+ LR +WGK+ IR +YE E+ +KL+DE R ++ ++ K++++L E + +++A D+ I+ L LS E EI LL+RRIA LE+E R K+ RL E++R R DLDQET+N I +++VQ+ +EIDF++ HDNE+KEL LA RD+T ENR+F+++E+ S++R+++ EYD+ R D+E+ + +KVQE++ S R+ +E + KEE RL+ QLS+LR K ++E++N+ LE+ ++EL +L+ +E+ + S +++ ++E ++M E Q ++D K +L+ EIA YRK+LEGEE+R+GL+ ++EQ + KT I +T T+ ++K E ++ + QR+AKGNV IHE S DGKFI+L+NT + KDE I +K ++ + + Y +P +L+ K LKI+++ D A ++G+G ++ T L NK EERATH Q+
Sbjct: 37 SGAGSGLSPFGQNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVV-KTHA-----ITQET--DTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWK-LKRRIDGKRENVYTLPRDFVLRA---GKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 563
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 323.168 bits (827), Expect = 1.368e-102 Identity = 218/539 (40.45%), Postives = 344/539 (63.82%), Query Frame = 2
Query: 101 SGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGK-KDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSA--NWGTGTHIFTALLNKSNEERATHTQK 1708
SGA G S + S+ + REREK+EM DLN+RLA+YIEKVRFLEAQN++L +L+ LR +WGK+ IR +YE E+ +KL+DE R ++ ++ K++++L E + +++A D+ I+ L LS E EI LL+RRIA LE+E R K+ RL E++R R DLDQET+N I +++VQ+ +EIDF++ HDNE+KEL LA RD+T ENR+F+++E+ S++R+++ EYD+ R D+E+ + +KVQE++ S R+ +E + KEE RL+ QLS+LR K ++E++N+ LE+ ++EL +L+ +E+ + S +++ ++E ++M E Q ++D K +L+ EIA YRK+LEGEE+R+GL+ ++EQ + KT I +T T+ ++K E ++ + QR+AKGNV IHE S DGKFI+L+NT + KDE I +K ++ + + Y +P +L+ K LKI+++ D A ++G+G ++ T L NK EERATH Q+
Sbjct: 37 SGAGSGLSPFGQNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVV-KTHA-----ITQET--DTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWK-LKRRIDGKRENVYTLPRDFVLRA---GKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 563
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 323.168 bits (827), Expect = 1.368e-102 Identity = 218/539 (40.45%), Postives = 344/539 (63.82%), Query Frame = 2
Query: 101 SGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGK-KDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSA--NWGTGTHIFTALLNKSNEERATHTQK 1708
SGA G S + S+ + REREK+EM DLN+RLA+YIEKVRFLEAQN++L +L+ LR +WGK+ IR +YE E+ +KL+DE R ++ ++ K++++L E + +++A D+ I+ L LS E EI LL+RRIA LE+E R K+ RL E++R R DLDQET+N I +++VQ+ +EIDF++ HDNE+KEL LA RD+T ENR+F+++E+ S++R+++ EYD+ R D+E+ + +KVQE++ S R+ +E + KEE RL+ QLS+LR K ++E++N+ LE+ ++EL +L+ +E+ + S +++ ++E ++M E Q ++D K +L+ EIA YRK+LEGEE+R+GL+ ++EQ + KT I +T T+ ++K E ++ + QR+AKGNV IHE S DGKFI+L+NT + KDE I +K ++ + + Y +P +L+ K LKI+++ D A ++G+G ++ T L NK EERATH Q+
Sbjct: 37 SGAGSGLSPFGQNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVV-KTHA-----ITQET--DTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWK-LKRRIDGKRENVYTLPRDFVLRA---GKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 563
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 322.783 bits (826), Expect = 2.476e-102 Identity = 218/539 (40.45%), Postives = 344/539 (63.82%), Query Frame = 2
Query: 101 SGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGK-KDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSA--NWGTGTHIFTALLNKSNEERATHTQK 1708
SGA G S + S+ + REREK+EM DLN+RLA+YIEKVRFLEAQN++L +L+ LR +WGK+ IR +YE E+ +KL+DE R ++ ++ K++++L E + +++A D+ I+ L LS E EI LL+RRIA LE+E R K+ RL E++R R DLDQET+N I +++VQ+ +EIDF++ HDNE+KEL LA RD+T ENR+F+++E+ S++R+++ EYD+ R D+E+ + +KVQE++ S R+ +E + KEE RL+ QLS+LR K ++E++N+ LE+ ++EL +L+ +E+ + S +++ ++E ++M E Q ++D K +L+ EIA YRK+LEGEE+R+GL+ ++EQ + KT I +T T+ ++K E ++ + QR+AKGNV IHE S DGKFI+L+NT + KDE I +K ++ + + Y +P +L+ K LKI+++ D A ++G+G ++ T L NK EERATH Q+
Sbjct: 45 SGAGSGLSPFGQNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVV-KTHA-----ITQET--DTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWK-LKRRIDGKRENVYTLPRDFVLRA---GKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 571
BLAST of Intermediate filament protein vs. Ensembl Celegans
Match: ifa-1 (Intermediate filament protein ifa-1 [Source:UniProtKB/Swiss-Prot;Acc:P90901]) HSP 1 Score: 323.168 bits (827), Expect = 3.017e-102 Identity = 218/539 (40.45%), Postives = 344/539 (63.82%), Query Frame = 2
Query: 101 SGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGK-KDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSA--NWGTGTHIFTALLNKSNEERATHTQK 1708
SGA G S + S+ + REREK+EM DLN+RLA+YIEKVRFLEAQN++L +L+ LR +WGK+ IR +YE E+ +KL+DE R ++ ++ K++++L E + +++A D+ I+ L LS E EI LL+RRIA LE+E R K+ RL E++R R DLDQET+N I +++VQ+ +EIDF++ HDNE+KEL LA RD+T ENR+F+++E+ S++R+++ EYD+ R D+E+ + +KVQE++ S R+ +E + KEE RL+ QLS+LR K ++E++N+ LE+ ++EL +L+ +E+ + S +++ ++E ++M E Q ++D K +L+ EIA YRK+LEGEE+R+GL+ ++EQ + KT I +T T+ ++K E ++ + QR+AKGNV IHE S DGKFI+L+NT + KDE I +K ++ + + Y +P +L+ K LKI+++ D A ++G+G ++ T L NK EERATH Q+
Sbjct: 62 SGAGSGLSPFGQNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVV-KTHA-----ITQET--DTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWK-LKRRIDGKRENVYTLPRDFVLRA---GKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 588
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0346460) HSP 1 Score: 157.147 bits (396), Expect = 1.688e-40 Identity = 149/535 (27.85%), Postives = 262/535 (48.97%), Query Frame = 2
Query: 137 SNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHD---NEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIR-LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERN----------AKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPT--GSNDLECSSANWGTGTHIFTALLNKSNEERA 1693
S +S R EK E+Q+LN+RLA YI++VR LE +N RLT E+ T R+ +E I+ ++E E+ + ++LLD+ R+ I +L E+ E +D+ + + + + +E + L E+ + K + RLR + + TR +L+QET++ + E+ +QS ++E+ F H NE + + Y + + +++ SL+EL+ +Y+ +++ R ++++ + K+Q L+ ++ R S H E +R + ++ L + E+E NA L + +L R+LD E D L +L R ++E+ +KE+Q++MD+K+SL+LEIAAY KLL GEE+R + ++ N T + S +K +R A +AKGNV I E +GKF+ L N G ++ I G+++ R I+ Y+ S ++P G + +WS + + + L S W + + T LLN E A
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTS-NSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNG---VITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0307059) HSP 1 Score: 157.147 bits (396), Expect = 1.688e-40 Identity = 149/535 (27.85%), Postives = 262/535 (48.97%), Query Frame = 2
Query: 137 SNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHD---NEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIR-LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERN----------AKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPT--GSNDLECSSANWGTGTHIFTALLNKSNEERA 1693
S +S R EK E+Q+LN+RLA YI++VR LE +N RLT E+ T R+ +E I+ ++E E+ + ++LLD+ R+ I +L E+ E +D+ + + + + +E + L E+ + K + RLR + + TR +L+QET++ + E+ +QS ++E+ F H NE + + Y + + +++ SL+EL+ +Y+ +++ R ++++ + K+Q L+ ++ R S H E +R + ++ L + E+E NA L + +L R+LD E D L +L R ++E+ +KE+Q++MD+K+SL+LEIAAY KLL GEE+R + ++ N T + S +K +R A +AKGNV I E +GKF+ L N G ++ I G+++ R I+ Y+ S ++P G + +WS + + + L S W + + T LLN E A
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTS-NSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNG---VITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0307058) HSP 1 Score: 157.147 bits (396), Expect = 1.688e-40 Identity = 149/535 (27.85%), Postives = 262/535 (48.97%), Query Frame = 2
Query: 137 SNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHD---NEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIR-LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERN----------AKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPT--GSNDLECSSANWGTGTHIFTALLNKSNEERA 1693
S +S R EK E+Q+LN+RLA YI++VR LE +N RLT E+ T R+ +E I+ ++E E+ + ++LLD+ R+ I +L E+ E +D+ + + + + +E + L E+ + K + RLR + + TR +L+QET++ + E+ +QS ++E+ F H NE + + Y + + +++ SL+EL+ +Y+ +++ R ++++ + K+Q L+ ++ R S H E +R + ++ L + E+E NA L + +L R+LD E D L +L R ++E+ +KE+Q++MD+K+SL+LEIAAY KLL GEE+R + ++ N T + S +K +R A +AKGNV I E +GKF+ L N G ++ I G+++ R I+ Y+ S ++P G + +WS + + + L S W + + T LLN E A
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTS-NSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNG---VITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: Lam (gene:FBgn0002525 transcript:FBtr0079100) HSP 1 Score: 157.147 bits (396), Expect = 1.688e-40 Identity = 149/535 (27.85%), Postives = 262/535 (48.97%), Query Frame = 2
Query: 137 SNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHD---NEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIR-LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERN----------AKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPT--GSNDLECSSANWGTGTHIFTALLNKSNEERA 1693
S +S R EK E+Q+LN+RLA YI++VR LE +N RLT E+ T R+ +E I+ ++E E+ + ++LLD+ R+ I +L E+ E +D+ + + + + +E + L E+ + K + RLR + + TR +L+QET++ + E+ +QS ++E+ F H NE + + Y + + +++ SL+EL+ +Y+ +++ R ++++ + K+Q L+ ++ R S H E +R + ++ L + E+E NA L + +L R+LD E D L +L R ++E+ +KE+Q++MD+K+SL+LEIAAY KLL GEE+R + ++ N T + S +K +R A +AKGNV I E +GKF+ L N G ++ I G+++ R I+ Y+ S ++P G + +WS + + + L S W + + T LLN E A
Sbjct: 42 SPLSPTRHSRVAEKVELQNLNDRLATYIDRVRNLETENSRLTIEVQTTRDTVTRETTNIKNIFEAELLETRRLLDDTARDRARAEIDIKRLWEENEELKNKLDKKTKECTTAEGNVRMYESRANELNNKYNQANADRKKLNEDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQEINESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMQINRDEIQSLYEDKIQRLQEAAARTS-NSTHKSIEELRSTRVRIDALNANINELEQANADLNARIRDLERQLDNDRERHGQEIDLLEKELIRLREEMTQQLKEYQDLMDIKVSLDLEIAAYDKLLVGEEARLNITPATNTATVQSFSQSLRNSTRATPSRRTPSAAVKRKRAVVDESEDHSVADYYVSASAKGNVEIKEIDPEGKFVRLFNKGSEEVAIGGWQLQRLINEKGPSTTYKFHRSVRIEPNG---VITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVA 572
BLAST of Intermediate filament protein vs. Ensembl Fly
Match: LamC (gene:FBgn0010397 transcript:FBtr0333166) HSP 1 Score: 132.109 bits (331), Expect = 5.814e-32 Identity = 138/508 (27.17%), Postives = 244/508 (48.03%), Query Frame = 2
Query: 83 RQSYNFSGAPMGGS-----VQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAA---LAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDK-------LRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLM--KNERNA--------KVNHQRT------------------AKGNVIIHETSADGKFIILENTGKKDEDISGFK 1477
R S + P+GG+ V S S R++EK E+Q LN+RLA YI+++R LE +N RLT ELN ++ +E ++A+YE E+ +KLLDE +++L I +L E+ + +D+ + + + + +E G+ E++ RLR ++ R L+ ET+ + E++ QS ++E+ F H E+ E + + + + +++ SL+EL+ +Y+ ++ R ++E ++ ++Q L+ ++ R S EE ++ ++ L +K +E NA L + EL N ++ER + L ++LQR +DE+ ++E+Q +MD+K+SL+LEIAAY KLL GEE R + + T T GI N TA + S + R+A V +RT AKG++ I E +G+FI L N G ++ +++G++
Sbjct: 11 RVSRASTSTPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNLAQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVAENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLENQNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINREEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELE-------NLLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIESPGRPT---TDSGISSNGSHLTASASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLSEYSVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQ 508
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: lmna (lamin A [Source:ZFIN;Acc:ZDB-GENE-020424-3]) HSP 1 Score: 127.487 bits (319), Expect = 2.758e-30 Identity = 151/547 (27.61%), Postives = 267/547 (48.81%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEY--LQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAE----NRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIRLK---NQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQ----TIFKTSG-GIEGNIISKTAGKTQMSNLMKNERN----------------AKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
R +EK ++ +LN+RLA YI+KVR LE +N L + +E ++A YE E+ +K LD R+ L +++K+ E E G EA+ + + + ++ L L+ + + LE E K +++L + + L E + + +E+ +Q+ K+E++F K+ + E++E + Y E + + S++ +L +L+ +++ +L + ++E +N K++ R S+ R V + H L++ +R++ +QLS L+ + EAK +LE L R L R++ D E E ++R QR Q +LD E+Q ++D+KL+L++EI+AYRKLLEGEE R L T+ ++SG G ++ + +T + K N +++ Q +A G V + E +GKF+ L N +D+ + G ++ + I Y+ P LK GQ + IW+ G T S +DL + N WG+G T L++ S EE A
Sbjct: 25 RLQEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALAR--LKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRE-SKRRYESRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMR---QRMQQQLD----EYQELLDIKLALDMEISAYRKLLEGEEERLRLSPSPPPARGVTVTRSSGSGSHTRVVQSSTSRTSSGSAKKRRLNDNDSDASSVVGGTVTRTRISQQASASGRVTVDEVDLEGKFVRLNNKSDQDQSL-GHWQVKRQIGSGTPIVYKFPPKFNLKA-GQT--VTIWAAGAGGTHSPPSDLVWKTQNSWGSGDLFQTTLISSSGEEMA 557
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: lmna (lamin A [Source:ZFIN;Acc:ZDB-GENE-020424-3]) HSP 1 Score: 127.487 bits (319), Expect = 2.758e-30 Identity = 151/547 (27.61%), Postives = 267/547 (48.81%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEY--LQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAE----NRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIRLK---NQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQ----TIFKTSG-GIEGNIISKTAGKTQMSNLMKNERN----------------AKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
R +EK ++ +LN+RLA YI+KVR LE +N L + +E ++A YE E+ +K LD R+ L +++K+ E E G EA+ + + + ++ L L+ + + LE E K +++L + + L E + + +E+ +Q+ K+E++F K+ + E++E + Y E + + S++ +L +L+ +++ +L + ++E +N K++ R S+ R V + H L++ +R++ +QLS L+ + EAK +LE L R L R++ D E E ++R QR Q +LD E+Q ++D+KL+L++EI+AYRKLLEGEE R L T+ ++SG G ++ + +T + K N +++ Q +A G V + E +GKF+ L N +D+ + G ++ + I Y+ P LK GQ + IW+ G T S +DL + N WG+G T L++ S EE A
Sbjct: 25 RLQEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALAR--LKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRE-SKRRYESRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMR---QRMQQQLD----EYQELLDIKLALDMEISAYRKLLEGEEERLRLSPSPPPARGVTVTRSSGSGSHTRVVQSSTSRTSSGSAKKRRLNDNDSDASSVVGGTVTRTRISQQASASGRVTVDEVDLEGKFVRLNNKSDQDQSL-GHWQVKRQIGSGTPIVYKFPPKFNLKA-GQT--VTIWAAGAGGTHSPPSDLVWKTQNSWGSGDLFQTTLISSSGEEMA 557
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: lmna (lamin A [Source:ZFIN;Acc:ZDB-GENE-020424-3]) HSP 1 Score: 127.487 bits (319), Expect = 2.758e-30 Identity = 151/547 (27.61%), Postives = 267/547 (48.81%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEY--LQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAE----NRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIRLK---NQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQ----TIFKTSG-GIEGNIISKTAGKTQMSNLMKNERN----------------AKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
R +EK ++ +LN+RLA YI+KVR LE +N L + +E ++A YE E+ +K LD R+ L +++K+ E E G EA+ + + + ++ L L+ + + LE E K +++L + + L E + + +E+ +Q+ K+E++F K+ + E++E + Y E + + S++ +L +L+ +++ +L + ++E +N K++ R S+ R V + H L++ +R++ +QLS L+ + EAK +LE L R L R++ D E E ++R QR Q +LD E+Q ++D+KL+L++EI+AYRKLLEGEE R L T+ ++SG G ++ + +T + K N +++ Q +A G V + E +GKF+ L N +D+ + G ++ + I Y+ P LK GQ + IW+ G T S +DL + N WG+G T L++ S EE A
Sbjct: 25 RLQEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALAR--LKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRE-SKRRYESRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMR---QRMQQQLD----EYQELLDIKLALDMEISAYRKLLEGEEERLRLSPSPPPARGVTVTRSSGSGSHTRVVQSSTSRTSSGSAKKRRLNDNDSDASSVVGGTVTRTRISQQASASGRVTVDEVDLEGKFVRLNNKSDQDQSL-GHWQVKRQIGSGTPIVYKFPPKFNLKA-GQT--VTIWAAGAGGTHSPPSDLVWKTQNSWGSGDLFQTTLISSSGEEMA 557
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: lmna (lamin A [Source:ZFIN;Acc:ZDB-GENE-020424-3]) HSP 1 Score: 127.487 bits (319), Expect = 2.840e-30 Identity = 151/547 (27.61%), Postives = 267/547 (48.81%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEY--LQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAE----NRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIRLK---NQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQ----TIFKTSG-GIEGNIISKTAGKTQMSNLMKNERN----------------AKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
R +EK ++ +LN+RLA YI+KVR LE +N L + +E ++A YE E+ +K LD R+ L +++K+ E E G EA+ + + + ++ L L+ + + LE E K +++L + + L E + + +E+ +Q+ K+E++F K+ + E++E + Y E + + S++ +L +L+ +++ +L + ++E +N K++ R S+ R V + H L++ +R++ +QLS L+ + EAK +LE L R L R++ D E E ++R QR Q +LD E+Q ++D+KL+L++EI+AYRKLLEGEE R L T+ ++SG G ++ + +T + K N +++ Q +A G V + E +GKF+ L N +D+ + G ++ + I Y+ P LK GQ + IW+ G T S +DL + N WG+G T L++ S EE A
Sbjct: 25 RLQEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALAR--LKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRE-SKRRYESRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMR---QRMQQQLD----EYQELLDIKLALDMEISAYRKLLEGEEERLRLSPSPPPARGVTVTRSSGSGSHTRVVQSSTSRTSSGSAKKRRLNDNDSDASSVVGGTVTRTRISQQASASGRVTVDEVDLEGKFVRLNNKSDQDQSL-GHWQVKRQIGSGTPIVYKFPPKFNLKA-GQT--VTIWAAGAGGTHSPPSDLVWKTQNSWGSGDLFQTTLISSSGEEMA 557
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Match: viml (vimentin like [Source:ZFIN;Acc:ZDB-GENE-040426-1743]) HSP 1 Score: 121.709 bits (304), Expect = 3.459e-29 Identity = 120/422 (28.44%), Postives = 201/422 (47.63%), Query Frame = 2
Query: 20 TSARSTVTINKSSPAV----KEYEMRQSYNFSGAPMGGSVQIHSNVSSAV-----EGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLD-------EAEAARSELLPKINKLEEQLH-EYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHL-KEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESR 1231
+SAR+ V+ SS V K ++R S + P S + N+S A+ R EK +MQ LN+R A+YIEKVRFLE QNK L+ EL LR G+ + RI LYE EM L++ +D AE R L + +L+E+L E LQ D N+ +K R D+D + + E +V+S +DE+ F+K+ HD E+ EL D + ++ ++LR+++++Y+ + E+ + K +L ++ R E++ L K+E + Q+ + + + N LER + E+ + + F++ +L D+ +DE+ ++E+Q+++++K++L++EIA YRKLLEGEESR
Sbjct: 27 SSARTRVSFGASSSPVIYASKSAKVRSS---AAMPRLTSETLDFNLSDALNTEFKANRLNEKAQMQSLNDRFASYIEKVRFLEQQNKILSAELEQLR---GQRSSRIADLYEEEMRDLRRQVDLLTTEKTRAEVMRDNLAEDVERLKEKLQDEMLQREDAENS--------------------------------------------------MKSFRQDVDNAALARVDLERKVESLQDELAFLKNLHDEELAELQTQIQGQQVQVEMDMAKPDLTAALRDVRLQYENLASKNIQESEDWYKSKFADLTEAANRNN-EALRLAKQETNEYRRQVQAITCELDALRGTNESLERQMREMEENFSMESSGFQNTIGRLEEDIGNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 391
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: lmx1a (LIM homeobox transcription factor 1 alpha [Source:Xenbase;Acc:XB-GENE-481569]) HSP 1 Score: 129.798 bits (325), Expect = 4.506e-31 Identity = 146/553 (26.40%), Postives = 268/553 (48.46%), Query Frame = 2
Query: 101 SGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELR---------HSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQ--TIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLEC---SSANWGTGTHIFTALLNKSNEERATHT 1702
S AP GS + +S R +EK +++ LN+RLA YIE+VR LEA L +L E +E +R LYE E+ +KLLD+ R+ L ++ K+ E + + + Q ++ L +L+ E ++ LEE+ + I+ L ++ T L E + + E+++Q+ K+++DF ++ H+ E+KE+ + DS R + S++ +L+EL+ ++++++ + LE + + K++ + S+ RE + + L+ + L +QLS + + +EAK +L+ L+ RQ+ + + E ++R LQ + ++E++ ++D+KL+L++EI AYRK+LEGEE R L Q T+ + S + K + + +R KV + ++ G V + + +G ++ L N ++D + G+ ++R I Y++P +LK E + + IW+ G S + S NWGTG I LL+ S EE A T
Sbjct: 14 SAAPSPGSP---TRIS-----RMQEKEDLRHLNDRLAAYIERVRSLEADKSLLKIQLEEKEEVTSREVTNLRLLYETELADARKLLDQTANERARLQVELGKVREDYRQLQARNSKKETDLSLAQNLLRDLESKLNTKEADLATALSGKRGLEEQLQEQRAQIAGLESSLRDTTKQLHDEMLWRVDLENKMQTIKEQLDFQRNIHEQEVKEMRKRHDTRIVEIDSG--RRIEFESKLAEALQELRRDHEQQISDYKEQLERNFSAKLENAQLAAAKNSDYASATREEIMATKLRVDT--LSSQLSQYQKQNSALEAKVRELQDMLDRAHDMHRRQMTEKDREVTEIRQTLQ-------AQLEEYEQLLDVKLALDMEINAYRKMLEGEEQRLKLSPSPSQRSTVSRASTSQSSRLSRGKKRKLEETGRSVTKRAYKVVQEASSTGPVSVEDIDPEGNYVRLLNNTEEDHSLHGW-VVRRKHGSLPEIAYKLPCRFVLKSEQR---VTIWAAGAGAVHSPPTDLVWKSHKNWGTG-DIKIILLDSSGEECAERT 542
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: lmx1a (LIM homeobox transcription factor 1 alpha [Source:Xenbase;Acc:XB-GENE-481569]) HSP 1 Score: 129.413 bits (324), Expect = 5.724e-31 Identity = 146/553 (26.40%), Postives = 268/553 (48.46%), Query Frame = 2
Query: 101 SGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELR---------HSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQ--TIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLEC---SSANWGTGTHIFTALLNKSNEERATHT 1702
S AP GS + +S R +EK +++ LN+RLA YIE+VR LEA L +L E +E +R LYE E+ +KLLD+ R+ L ++ K+ E + + + Q ++ L +L+ E ++ LEE+ + I+ L ++ T L E + + E+++Q+ K+++DF ++ H+ E+KE+ + DS R + S++ +L+EL+ ++++++ + LE + + K++ + S+ RE + + L+ + L +QLS + + +EAK +L+ L+ RQ+ + + E ++R LQ + ++E++ ++D+KL+L++EI AYRK+LEGEE R L Q T+ + S + K + + +R KV + ++ G V + + +G ++ L N ++D + G+ ++R I Y++P +LK E + + IW+ G S + S NWGTG I LL+ S EE A T
Sbjct: 14 SAAPSPGSP---TRIS-----RMQEKEDLRHLNDRLAAYIERVRSLEADKSLLKIQLEEKEEVTSREVTNLRLLYETELADARKLLDQTANERARLQVELGKVREDYRQLQARNSKKETDLSLAQNLLRDLESKLNTKEADLATALSGKRGLEEQLQEQRAQIAGLESSLRDTTKQLHDEMLWRVDLENKMQTIKEQLDFQRNIHEQEVKEMRKRHDTRIVEIDSG--RRIEFESKLAEALQELRRDHEQQISDYKEQLERNFSAKLENAQLAAAKNSDYASATREEIMATKLRVDT--LSSQLSQYQKQNSALEAKVRELQDMLDRAHDMHRRQMTEKDREVTEIRQTLQ-------AQLEEYEQLLDVKLALDMEINAYRKMLEGEEQRLKLSPSPSQRSTVSRASTSQSSRLSRGKKRKLEETGRSVTKRAYKVVQEASSTGPVSVEDIDPEGNYVRLLNNTEEDHSLHGW-VVRRKHGSLPEIAYKLPCRFVLKSEQR---VTIWAAGAGAVHSPPTDLVWKSHKNWGTG-DIKIILLDSSGEECAERT 542
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: lmx1a (LIM homeobox transcription factor 1 alpha [Source:Xenbase;Acc:XB-GENE-481569]) HSP 1 Score: 127.102 bits (318), Expect = 2.368e-30 Identity = 144/550 (26.18%), Postives = 266/550 (48.36%), Query Frame = 2
Query: 101 SGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELR---------HSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQ--TIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLEC---SSANWGTGTHIFTALLNKSNEERA 1693
S AP GS + +S R +EK +++ LN+RLA YIE+VR LEA L +L E +E +R LYE E+ +KLLD+ R+ L ++ K+ E + + + Q ++ L +L+ E ++ LEE+ + I+ L ++ T L E + + E+++Q+ K+++DF ++ H+ E+KE+ + DS R + S++ +L+EL+ ++++++ + LE + + K++ + S+ RE + + L+ + L +QLS + + +EAK +L+ L+ RQ+ + + E ++R LQ + ++E++ ++D+KL+L++EI AYRK+LEGEE R L Q T+ + S + K + + +R KV + ++ G V + + +G ++ L N ++D + G+ ++R I Y++P +LK E + + IW+ G S + S NWGTG I LL+ S E R
Sbjct: 14 SAAPSPGSP---TRIS-----RMQEKEDLRHLNDRLAAYIERVRSLEADKSLLKIQLEEKEEVTSREVTNLRLLYETELADARKLLDQTANERARLQVELGKVREDYRQLQARNSKKETDLSLAQNLLRDLESKLNTKEADLATALSGKRGLEEQLQEQRAQIAGLESSLRDTTKQLHDEMLWRVDLENKMQTIKEQLDFQRNIHEQEVKEMRKRHDTRIVEIDSG--RRIEFESKLAEALQELRRDHEQQISDYKEQLERNFSAKLENAQLAAAKNSDYASATREEIMATKLRVDT--LSSQLSQYQKQNSALEAKVRELQDMLDRAHDMHRRQMTEKDREVTEIRQTLQ-------AQLEEYEQLLDVKLALDMEINAYRKMLEGEEQRLKLSPSPSQRSTVSRASTSQSSRLSRGKKRKLEETGRSVTKRAYKVVQEASSTGPVSVEDIDPEGNYVRLLNNTEEDHSLHGW-VVRRKHGSLPEIAYKLPCRFVLKSEQR---VTIWAAGAGAVHSPPTDLVWKSHKNWGTG-DIKIILLDSSGEVRC 539
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: timm13 (translocase of inner mitochondrial membrane 13 homolog [Source:NCBI gene;Acc:734099]) HSP 1 Score: 119.783 bits (299), Expect = 7.945e-28 Identity = 144/549 (26.23%), Postives = 253/549 (46.08%), Query Frame = 2
Query: 161 GREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDF---WRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSS---------PREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFE----SERDKLR-------SDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAK--------VNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSK----GNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHT 1702
R +EK E++ LN+RLA YI++VR LE +N RL +++ E +E I+ LYE E+ +K+LDE R+ L ++ K L E + + + Q I L E E+G +LE E + +S+ D + L++ET+ + E+ +QS ++E+DF K+ ++ E +E R +R + S++ +L EL+ ++D +++ + +LE + K+ ++ SS RE + ++ E L QLS L+ + E + I + E S+RDK R ++ +D++ + E+Q ++D+KL+L++EI AYRKLLEGEE R K S + + A + S + K ++ Q +A G++ I E +GK++ L+N KD+ + ++ ++ + I Y+ +LK GQ +KI+S + P S + + + WGTG++I T L+N EE A T
Sbjct: 31 SRLQEKEELRHLNDRLAVYIDRVRSLELENDRLMVKISEKEEVTTREVSGIKNLYESELADARKVLDETARERARLQIELGKFRSDLDELTKNYKKKDADLSTAQGRIRDLEALFHRSEAELGTALGEKRSLEAEVADLRAQLSKAEDAHAVAKKQLEKETLMRVDFENRIQSLQEEMDFRKNIYEEESRETRKRHERRIVEVDRGHQCDYDSKLAQALDELRKQHDEQVKMYKEELEQTYQAKLDNIKRSSDHNDKAANTAREELTEARMRIET--LSYQLSGLQKQANAAEDR------------------IRELEQLLSSDRDKYRKLLDSKEKEMAEMRDQMQQQLTEYQELLDVKLALDMEINAYRKLLEGEEER-----------LKLSPSPQSRVTVSRATSSSSSATRTSRSKRKRTGFTRFHLSQQASATGSISIEEIDLEGKYVHLKNNSDKDQSLGNWR-LKRKIGEEEEIVYKFTPKYVLKA-GQS--VKIYSADAGVAHSPP-SILVWKNQSTWGTGSNIRTYLVNTEEEEVAVRT 543
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Match: vim (vimentin [Source:NCBI gene;Acc:496727]) HSP 1 Score: 118.242 bits (295), Expect = 1.000e-27 Identity = 103/363 (28.37%), Postives = 176/363 (48.48%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDE-------AEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESR 1231
R EK EMQ+LN+R AN+I+KVRFLE QNK L EL L+ GK RI LYE EM +L++ LD+ E R L + +L E+L + EMI+K E EG ++ R D+D ++ I E +V+S ++EI F+K HD E++EL + D + ++ ++LR+++ +Y+ D E+ + K +L ++ R K++ + Q+ L + M+ N ER + E+ + +++ +L+ ++ ++E+ ++E+Q+++++K++L++EIA YRKLLEGEESR
Sbjct: 100 RTNEKAEMQELNDRFANFIDKVRFLEQQNKILVAELEQLK---GKGTSRIGDLYEEEMRELRRQLDQVTNAKDRVEVDRDNLADDLQRLREKLQD----------------EMIQK-----EEAEGN----------------------------LQSFRQDVDNASLARIDLERKVESLQEEIVFLKKLHDEEIRELQLQIQESHIQVDMDVSKPDLTAALRDVRQQYENVAAKNLSDAEDWYKSKFADLSEAANRNNDALRQAKQDANDYRRQIQTLTCEIDAMKGSNESYERQMREMEENFAGEAANYQDTIQRLQEEIHNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 410
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Lmna (lamin A [Source:MGI Symbol;Acc:MGI:96794]) HSP 1 Score: 132.109 bits (331), Expect = 4.529e-32 Identity = 158/551 (28.68%), Postives = 266/551 (48.28%), Query Frame = 2
Query: 107 APMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIR---LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNER-------NAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
A G+ + +S R +EK ++Q+LN+RLA YI++VR LE +N L + E +E I+A YE E+ +K LD R+ L +++K+ E+ E + Q ++ L L+ E + LE E + +++L + + L E + + +E+ +Q+ K+E+DF K+ + E++E L D+ + R+F S + +L+EL+ +++ ++E + +LE ++ K+ R S+ R V + H L++ IR L QLS L+ + EAK LE L R R + + E E ++R+ R Q +LD E+Q ++D+KL+L++EI AYRKLLEGEE R L + TS G S ++ ++ K + ++ H RT+ G V + E +GKF+ L N +D+ + ++ IR + D ++ Y P LK GQ + IW+ G T S DL + N WG G+ + TAL+N + EE A
Sbjct: 9 ATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDN-GKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA---RMQQQLD----EYQELLDIKLALDMEIHAYRKLLEGEEERLRL------SPSPTSQRSRGRASSHSSQSQGGGSVTKKRKLESSESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQ-IRRQNGDDPLMTYRFPPKFTLKA-GQ--VVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Lmna (lamin A [Source:MGI Symbol;Acc:MGI:96794]) HSP 1 Score: 132.109 bits (331), Expect = 9.038e-32 Identity = 158/551 (28.68%), Postives = 266/551 (48.28%), Query Frame = 2
Query: 107 APMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIR---LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNER-------NAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGS--NDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
A G+ + +S R +EK ++Q+LN+RLA YI++VR LE +N L + E +E I+A YE E+ +K LD R+ L +++K+ E+ E + Q ++ L L+ E + LE E + +++L + + L E + + +E+ +Q+ K+E+DF K+ + E++E L D+ + R+F S + +L+EL+ +++ ++E + +LE ++ K+ R S+ R V + H L++ IR L QLS L+ + EAK LE L R R + + E E ++R+ R Q +LD E+Q ++D+KL+L++EI AYRKLLEGEE R L + TS G S ++ ++ K + ++ H RT+ G V + E +GKF+ L N +D+ + ++ IR + D ++ Y P LK GQ + IW+ G T S DL + N WG G+ + TAL+N + EE A
Sbjct: 9 ATRSGAQASSTPLSPTRITRLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLRITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSKVREEFKELKARNTKKEGDLLAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDN-GKQREF-ESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA---RMQQQLD----EYQELLDIKLALDMEIHAYRKLLEGEEERLRL------SPSPTSQRSRGRASSHSSQSQGGGSVTKKRKLESSESRSSFSQHARTS-GRVAVEEVDEEGKFVRLRNKSNEDQSMGNWQ-IRRQNGDDPLMTYRFPPKFTLKA-GQ--VVTIWASGAGATHSPPTDLVWKAQNTWGCGSSLRTALINSTGEEVA 539
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Des (desmin [Source:MGI Symbol;Acc:MGI:94885]) HSP 1 Score: 113.62 bits (283), Expect = 3.046e-26 Identity = 98/366 (26.78%), Postives = 175/366 (47.81%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLD-------EAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGL 1240
R EK E+Q+LN+R ANYIEKVRFLE QN L E+N L+ G+E R+ LYE EM +L++ ++ + R L+ + +L+ +L E +Q +EA N + R D+D T+ I E ++S +EI F+K H+ E++EL A D + ++ ++LR+++ +Y+ + E + KV +L ++ + K+E + ++Q+ + + ++ N L R + EL + N ++ +L +++ +DE+ ++E+Q+++++K++L++EIA YRKLLEGEESR L
Sbjct: 104 RTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLK---GREPTRVAELYEEEMRELRRQVEVLTNQRARVDVERDNLIDDLQRLKAKLQEEIQLREEAENN-------------------------------------------------LAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEANGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINL 417
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Vim (vimentin [Source:MGI Symbol;Acc:MGI:98932]) HSP 1 Score: 110.923 bits (276), Expect = 1.524e-25 Identity = 111/410 (27.07%), Postives = 198/410 (48.29%), Query Frame = 2
Query: 32 STVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDE-------AEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGL 1240
S V + S P V+ ++ S +FS A I++ + R EK E+Q+LN+R ANYI+KVRFLE QNK L EL L+ G+ R+ LYE EM +L++ +D+ E R L I +L E+L E EM+++ E E ++ R D+D ++ + E +V+S ++EI F+K HD E++EL A + D + ++ ++LR+++ +Y+ + E + K +L ++ R K+E+ + Q+ +L + ++ N LER + E+ + +++ +L+ ++Q ++E+ ++E+Q+++++K++L++EIA YRKLLEGEESR L
Sbjct: 66 SAVRLRSSVPGVRL--LQDSVDFSLADA-----INTEFKNT---RTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLK---GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE----------------EMLQR-----EEAEST----------------------------LQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISL 413
BLAST of Intermediate filament protein vs. Ensembl Mouse
Match: Lmnb2 (lamin B2 [Source:MGI Symbol;Acc:MGI:96796]) HSP 1 Score: 112.464 bits (280), Expect = 1.681e-25 Identity = 150/598 (25.08%), Postives = 259/598 (43.31%), Query Frame = 2
Query: 56 SPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKD-----SHDNEMKELAALAYRDSTAENR-DFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIH-----LKEENIR---LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFE----SERDKLRSDLQRTQDELDSI-------MKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISK-------------------TAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLEC---SSANWGTGTHIFTALLNKSNEERATHTQK 1708
SPA M S P G + +S R +EK E+++LN+RLA+YI++VR LE +N RL ++ E +E I+ LYE E+ +++LDE R+ L +I K++ +L E + + + + Q ++ L E E+ LE E + +++ D + L++ET+ + E+ QS ++E+ F K + + L DS+ + DF +M +L +L+ ++D ++ R +LE + K+ + S + ++ H LKE +R L QL L+ + E I++ E ERDK R L + E+ + + E+Q ++D+KL+L++EI+AYRKLLEGEE R L I + + S T+G ++ + + +++ Q A G V I E +G+F+ L+N+ KD+ + ++ I+ + I Y+ +L+ GQ + +W+ G T S S NWG G TAL++ EE A K
Sbjct: 12 SPAAATSAM-----ASLPPHAGPA---TPLSPTRLSRLQEKEELRELNDRLAHYIDRVRALELENDRLLLRISEKEEVTTREVSGIKTLYESELADARRVLDETARERARLQIEIGKVQAELEEARKSAKKREGELTVAQGRVKDLESLFHRSEAELATALSDKQGLETEVAELRAQLAKAEDGHAVAKKQLEKETLMRVDLENRCQSLQEELAFSKSVFEEEVRETRRRHERRLVEVDSSRQQEYDF---KMAQALEDLRSQHDEQVRLYRVELEQTYQAKLDNAKLLSDQND-KAAHAAREELKEARMRVESLSYQLLGLQKQASAAE------------------NHIHELEEALAGERDKFRKMLDAKEQEMTEVRDAMQQQLAEYQELLDIKLALDMEISAYRKLLEGEEERLKLSPSPSSRITISRATSSSSSSSGVGMSVGQGRGKRRRLETEDTSGSPSRASRVSS--GSRLAQQTVATGVVNIDEVDPEGRFVRLKNSSDKDQSLGNWR-IKRQVLEGEDIAYKFTPKYVLRA-GQT--VTVWAAGAGATHSPPSTLVWKSQTNWGPGESFRTALVSADGEEVAVKAAK 573
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|Q01241|NF70_DORPE (70 kDa neurofilament protein OS=Doryteuthis pealeii OX=1051067 PE=2 SV=1) HSP 1 Score: 384.03 bits (985), Expect = 2.072e-124 Identity = 245/599 (40.90%), Postives = 384/599 (64.11%), Query Frame = 2
Query: 11 ASRTSARSTVTINKSSPAVKEYEM------RQSYNFS--GAPMGGSVQIHSNVSS-----AVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTI--------------FKTSGGIEGNIISKTAGKTQMS-NLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSAN--WGTGTHIFTALLNKSNEERATHTQKTTF 1717
+++ R++ IN+SS + M +SY+FS M G ++N+SS REREK++M+DLNER ANYIEKVRFLEAQNK+L EL L+ +WGKE I+ +YE E+++ +KL+D + L ++ +L +QL + ++E+ H +DQE I + N+QL++ EGEI +LRR I +LE+E+ R ++++ DE+++ RMDL+ ET+NH+ +E+ Q+ ++E++F KD H E+KELAALAYRD+TAENR+FWR+E+ ++R++Q EYD K + MRGD+E ++N+KVQE R + ++ +E KEEN +LK+ ++ +R++ ++EA+NAQLER ++L R+L+ + E E + + ++ + + E++SI+KE Q++MD+KLSLELEIAAYRKLLEGEESR G++ ++EQ + ++ GG E G +Q+S +M+ E AK +QRT+KG+V I E + G FI LE KK+E+++G+K I +D + YEIPN +LK +KIWSK ++ D S N WGTG+++ T L N+ E++A +TQ T +
Sbjct: 32 SAKIHPRTSGYINRSSQSPFRSSMGSNAAYTRSYDFSYGATAMPGR---YANISSTGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTELIDQLERQQKDLEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRVGMKQIVEQVVGARPNEAEVLSTILTRSEGGYEA------TGDSQISMKMMRGELAAKTTYQRTSKGSVSIKEADSQGCFIALET--KKEENLTGWK-IVRKVDDNKVYTYEIPN-LVLKT---GTVVKIWSKNHQAQARGDDLVSRENDTWGTGSNVVTILQNEKGEDKANYTQNTVY 614
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|P90901|IFA1_CAEEL (Intermediate filament protein ifa-1 OS=Caenorhabditis elegans OX=6239 GN=ifa-1 PE=1 SV=2) HSP 1 Score: 322.783 bits (826), Expect = 3.149e-101 Identity = 218/539 (40.45%), Postives = 344/539 (63.82%), Query Frame = 2
Query: 101 SGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGK-KDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSA--NWGTGTHIFTALLNKSNEERATHTQK 1708
SGA G S + S+ + REREK+EM DLN+RLA+YIEKVRFLEAQN++L +L+ LR +WGK+ IR +YE E+ +KL+DE R ++ ++ K++++L E + +++A D+ I+ L LS E EI LL+RRIA LE+E R K+ RL E++R R DLDQET+N I +++VQ+ +EIDF++ HDNE+KEL LA RD+T ENR+F+++E+ S++R+++ EYD+ R D+E+ + +KVQE++ S R+ +E + KEE RL+ QLS+LR K ++E++N+ LE+ ++EL +L+ +E+ + S +++ ++E ++M E Q ++D K +L+ EIA YRK+LEGEE+R+GL+ ++EQ + KT I +T T+ ++K E ++ + QR+AKGNV IHE S DGKFI+L+NT + KDE I +K ++ + + Y +P +L+ K LKI+++ D A ++G+G ++ T L NK EERATH Q+
Sbjct: 45 SGAGSGLSPFGQNAASTIRDSREREKKEMSDLNDRLASYIEKVRFLEAQNRKLAADLDALRSKWGKDTHNIRNMYEGELVDAQKLIDETNKQRKDMEGQLKKMQDELAEMRRKLEDATKGREQDRAKIDALLVTLSNLEAEISLLKRRIAQLEDEVKRIKQENQRLLSELQRARTDLDQETLNRIDYQNQVQTLLEEIDFLRRVHDNEIKELQTLASRDTTPENREFFKNELSSAIRDIREEYDQVNNVHRNDMESWYRLKVQEIQTQSARQNMEQGYAKEEVKRLRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQALMVELQMLLDTKQTLDAEIAIYRKMLEGEENRAGLKQLVEQVV-KTHA-----ITQET--DTETMRVVKGETASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWK-LKRRIDGKRENVYTLPRDFVLRA---GKTLKIFARNQGVASPPDQLVYDAEDSFGSGNNVQTILFNKEGEERATHIQR 571
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|Q01240|NF60_DORPE (60 kDa neurofilament protein OS=Doryteuthis pealeii OX=1051067 PE=2 SV=1) HSP 1 Score: 314.694 bits (805), Expect = 5.543e-99 Identity = 188/431 (43.62%), Postives = 298/431 (69.14%), Query Frame = 2
Query: 11 ASRTSARSTVTINKSSPAVKEYEM------RQSYNFS--GAPMGGSVQIHSNVSS-----AVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTI 1264
+++ R++ IN+SS + M +SY+FS M G ++N+SS REREK++M+DLNER ANYIEKVRFLEAQNK+L EL L+ +WGKE I+ +YE E+++ +KL+D + L ++ +L +QL + ++E+ H +DQE I + N+QL++ EGEI +LRR I +LE+E+ R ++++ DE+++ RMDL+ ET+NH+ +E+ Q+ ++E++F KD H E+KELAALAYRD+TAENR+FWR+E+ ++R++Q EYD K + MRGD+E ++N+KVQE R + ++ +E KEEN +LK+ ++ +R++ ++EA+NAQLER ++L R+L+ + E E + + ++ + + E++SI+KE Q++MD+KLSLELEIAAYRKLLEGEESR G++ ++EQ +
Sbjct: 32 SAKIHPRTSGYINRSSQSPFRSSMGSNAAYTRSYDFSYGATAMPGR---YANISSTGVNHVKANREREKQDMRDLNERFANYIEKVRFLEAQNKKLAGELEELKSKWGKETSAIKEMYETELEEARKLIDATNKEKITLDVRVTELIDQLERQQKDLEESRTYHQIDQEQIARQNQQLADLEGEISMLRRSIESLEKEKMRQSNILAKMNDEMEKMRMDLNNETINHLDAENRRQTLEEELEFQKDVHAQELKELAALAYRDTTAENREFWRNELAQAIRDIQQEYDAKCDQMRGDIEAYYNLKVQEFRTGATKQNMEVTRNKEENTKLKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMESILKELQDLMDIKLSLELEIAAYRKLLEGEESRVGMKQIVEQVV 459
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|P23730|IFEA_ASCSU (Intermediate filament protein A (Fragment) OS=Ascaris suum OX=6253 PE=1 SV=1) HSP 1 Score: 301.212 bits (770), Expect = 5.537e-94 Identity = 201/518 (38.80%), Postives = 329/518 (63.51%), Query Frame = 2
Query: 185 MQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSN------DLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFT 1720
M DLN+RLA+YIEKVRFLEAQN++L +L+ LR RWGK+ +RA+YE E+ + +KL+++ R EL +I KL ++L EY + ++A H +D++ I++L QLS E EI LLRRRIA + EE R KK + +E+ + R DLDQET+N I +++VQ+ +EIDFM+ HD E+ EL A+A RD+T ENR+++++E+ S++R+++ EYD+ R D+E+ + +KVQE++ S R+ +E + K+ RL+ QL++LR K ++E +N+ L++ E + D Q +E+ + + +++ +E ++M ++D K +L+ EIA YRK+LEGEE+R+GLR ++EQ + KT G + +T+ ++K E ++ + QR+AKGNV I ET+ DG++++LENT + E+ G ++ + + I Y +P IL+P K +KIW++G S DLE + +G+G+++ T L N+ EERATH Q+++ T
Sbjct: 1 MSDLNDRLASYIEKVRFLEAQNRKLAADLDLLRGRWGKDTLSVRAMYEGELQEARKLVNDTNRQREELEKEIRKLLDELSEYRRKYEDALRGHQIDRDRIDELLNQLSGLEAEINLLRRRIANIIEEIARIKKENLQFANELTKARSDLDQETLNRIDFQNQVQTLLEEIDFMRRVHDQEIAELQAMASRDTTPENREYFKNELASAIRDIRAEYDQICNVNRMDMESWYKLKVQEIQTQSTRQNLEQNYAKK---RLRVQLTDLRGKLADLEGRNSLLKQTQELNYQLEDDQ-RSYEAALNDRDAQIRKMDEECQALMM----LLDTKQTLDAEIAIYRKMLEGEENRAGLRQLVEQVV-KTHGLTQ-------VDETESLRVLKGETASRTSFQRSAKGNVSIQETAPDGRYVVLENTHRSKEEAIGEWKLKRKIDGKREIVYTLPRDFILRP---GKSVKIWARGQGGIHSPPEQLVFDLEDT---FGSGSNVQTILFNREGEERATHIQRSSHT 496
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Match: sp|P90900|IFA4_CAEEL (Intermediate filament protein ifa-4 OS=Caenorhabditis elegans OX=6239 GN=ifa-4 PE=1 SV=3) HSP 1 Score: 281.952 bits (720), Expect = 1.167e-85 Identity = 202/578 (34.95%), Postives = 348/578 (60.21%), Query Frame = 2
Query: 8 MASRTSARSTVTINKSSPAVKEYEMRQSYNFSG-APMGGSVQIHSNVSSAV-EGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKG---NRPTGS--NDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFT 1720
M S + ST++ + +S +K E+ S SG +P GG + +SA+ E R REK+EM +LN+RLA+YIEKVRFLEAQN+++ +LN LR +WG ++ ++ +YE E+ K L+ +++ R++L +I KL E+L+ Y + EA + ++ ++ + +L E EI LL+RRI+ +EE G K+ R+ D + R ++QET+N I +++VQ+ +E DF++ HD+E+ +L A+A RD+T ENR+++++E+ S++RE++ EYD R D+E+ + +KVQE+ + R +E + +EE RL+ L ++R K ++E +N LE+ +E+L +++ + +E + + + + +DE +M E Q ++D K +L+ EI YRK+L+GEE+R+GLR ++EQ + TS I +T + + ++K E + ++ R+AKGN+ I E GK+I+LEN ++DE+I +K +R + I + P L+ QK +KI+++G + P S DLE S +GTG + T L NK E+RA+H+Q+ + T
Sbjct: 20 MQSTATYGSTIS-SGTSRTLKITEIGGSNLTSGMSPFGG------HAASAIRESRTREKKEMSELNDRLASYIEKVRFLEAQNRKMEKDLNLLRGKWGHDSTSVKVMYETELRSAKDLIADSDKERAQLEDQIKKLVEELNNYRNKLHEAERGADVTRKELDNVLGRLGALEAEIELLKRRISLMEESIGHLKRENHRMIDSLHHARNAVEQETLNRIDYQNQVQTLLEECDFIRRIHDSEIHDLLAMASRDTTVENREYFKNELSSAIREIRSEYDHVSNTTRTDIESWYKLKVQEIHTQNSRNCLEQNYAREEVKRLRTTLGDMRGKMADLEGRNLLLEKQIEDLNYQMEEDMRSYEQSLNDKDTSINKLRDESKILMVELQMLIDTKQTLDAEIVIYRKMLDGEENRAGLRQLVEQVVKTTS-------IHQTK-EIESLRVLKGETTSHSSYSRSAKGNIAIQEAEPSGKYIVLENISRRDENIGDWK-LRRKIAGKREIVFTFPREFTLRA---QKSVKIFARGQGVHSPPDSLVYDLEDS---FGTGNDVVTTLYNKEGEDRASHSQRASHT 575
BLAST of Intermediate filament protein vs. TrEMBL
Match: Q86M46 (Intermediate filament protein OS=Dugesia japonica OX=6161 GN=Djf-1 PE=2 SV=1) HSP 1 Score: 944.11 bits (2439), Expect = 0.000e+0 Identity = 501/572 (87.59%), Postives = 546/572 (95.45%), Query Frame = 2
Query: 8 MASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFTN 1723
MASRT++RSTVTINKS+PA KEYEMRQSYN + +P GS QIH+NVS+AVEGREREKR+MQDLNERLANYIEKVRFLEAQNK+L NELNTLRERWGKEAE+IR LYEIEMDQLKKLLDEAEAARSEL+P+INKLEEQLHEYL GIDEANNQH MDQEMIEK+NRQLSECEGEIGLLRRRIAALEEERGR+KKTI+RLRDEIKRTRMDLDQETMNHIASESEVQS KD+IDFMKDSHDNEMKELAALAYRD+TAENRDFW+S+MG+SLRELQ+EYD KLE MRG+LENHHNVKVQELRHSSPREG+ES+HLKEENIRLK QL+NLRSKCPE+EAKNAQLERFLEELRR+LDRQ++DFE E++KL+SDLQRTQDELDSIMKEFQN MDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGG EGNI+S++A +SN MK+ERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKIIRNIDN+RSI++YEIP+ST+L+PEGQQKFLKIWSKGNRP GSNDLEC S+ WGTG HIFTALLNKSNEERATHTQKTT+TN
Sbjct: 1 MASRTTSRSTVTINKSNPATKEYEMRQSYNMNASPFAGSGQIHNNVSTAVEGREREKRDMQDLNERLANYIEKVRFLEAQNKKLNNELNTLRERWGKEAEKIRILYEIEMDQLKKLLDEAEAARSELIPRINKLEEQLHEYLHGIDEANNQHSMDQEMIEKMNRQLSECEGEIGLLRRRIAALEEERGRTKKTINRLRDEIKRTRMDLDQETMNHIASESEVQSHKDQIDFMKDSHDNEMKELAALAYRDTTAENRDFWKSQMGNSLRELQMEYDNKLEVMRGELENHHNVKVQELRHSSPREGIESVHLKEENIRLKTQLTNLRSKCPELEAKNAQLERFLEELRRDLDRQMSDFEMEKNKLKSDLQRTQDELDSIMKEFQNAMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGAEGNIVSRSA----VSNSMKSERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKIIRNIDNNRSIVQYEIPSSTVLRPEGQQKFLKIWSKGNRPMGSNDLECQSSTWGTGMHIFTALLNKSNEERATHTQKTTYTN 568
BLAST of Intermediate filament protein vs. TrEMBL
Match: A0A5J6BTN2 (Intermediate filament b-like protein 1 (Fragment) OS=Minona ileanae OX=60013 PE=2 SV=1) HSP 1 Score: 544.273 bits (1401), Expect = 0.000e+0 Identity = 302/560 (53.93%), Postives = 413/560 (73.75%), Query Frame = 2
Query: 47 NKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNII-SKTAGKTQMSN--LMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTF 1717
N + V+E EMR+S + G + +H+ VS+ +E RE+EK++M+DLNER ANYIEKVRFLEAQNK+L NEL TLR+RWGKE ERI+ +Y++EM QL+KLLD+A +++EL K+N LEE + E + +D AN H D+EMI++LN Q+S+ E E+ +LRRRI++ E + R K + RLRDEI+R RMDLDQET+NHI SE E S +DEI+F+K HD+E+KELAALAYRD+T ENR+FWRSEM LR++Q EYD KL+ M+ ++E H+N+K+QE R ++ R G E H KEENIR+K QLS LR + PE+EA+NAQLER LEELRR+ + ++ D+E ER LR L Q EL+S++ E Q ++D KLSLELEIAAYRKLLEGEESR+GLRN++E+T+ ++S +I ++ SN ++K E +AK +QRTAKGN+ I E + DGKF+ +ENTGKK EDISG +I RN+DN R IIR+ P+ T L+PEG+ K +K+W++G +P GS+D+EC+ WG G +I T L++ EE+ATHTQ+T +
Sbjct: 55 NSTGSVVREVEMRRSTGALSSVNGHTAGVHNGVSNIMENREKEKKDMRDLNERFANYIEKVRFLEAQNKKLANELATLRDRWGKETERIKQMYDVEMTQLRKLLDDAMKSKAELEVKVNSLEETVDELQKQLDAANQLHNSDREMIDRLNSQVSDQESELSVLRRRISSFESDHSRDKAEVQRLRDEIRRLRMDLDQETLNHINSEQEAHSLRDEIEFLKKVHDSELKELAALAYRDTTQENREFWRSEMSQCLRDIQNEYDNKLDVMQSEMETHYNLKIQESRTNNTRGGAELQHTKEENIRIKQQLSELRDRIPELEARNAQLERLLEELRRDNEEKLRDWELERSSLRKTLSDNQAELESVLVELQTLLDAKLSLELEIAAYRKLLEGEESRAGLRNLVEETMKRSSDYETTRVIETRKTNAMPPSNMGIIKGEMSAKTTYQRTAKGNISIQECAPDGKFLTIENTGKKREDISGMRITRNVDNGRQIIRFTFPDKTFLEPEGRAKSIKVWARGLKPPGSSDMECNENTWGNGANIHTVLISSDGEEKATHTQRTVY 614
BLAST of Intermediate filament protein vs. TrEMBL
Match: A0A267FSC2 (Uncharacterized protein OS=Macrostomum lignano OX=282301 GN=BOX15_Mlig010052g3 PE=3 SV=1) HSP 1 Score: 497.278 bits (1279), Expect = 3.257e-166 Identity = 298/584 (51.03%), Postives = 423/584 (72.43%), Query Frame = 2
Query: 23 SARSTVTINKSSP-----------AVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSG----LRNMMEQ---TIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFT 1720
SA TV IN++ P +VK + +S A G Q ++ V++ + GRE+EK++MQ+LNER ANYIEKVRFLEAQNK+L+NEL L++RWGKE ER++ YE E+ QL+KLLD++E ++E +I+ LE+QL+E +DEAN QH +D+E I+KLN+QL++ +GEI LLRRR+A +EER R +K I RLRDE+ R R DLD ET+NHI +E+E QS +++++FMK H++E+KELAALAYRD+T+ENR+FW++EM +L E+Q EYD K++ MR ++E+ +++KVQE R ++ R+ +E HL+EEN R+K Q+++ R++ PE+EA+NAQLER LEELRRE++ + E E+ +LR+DL TQ L+ +KE Q +MDMKLSLELEIAAYRKLLEGEE+R + +M Q T+ S +E + + K QMS L+K E +AK +QRTAKGNV I E SADGK+I+LENTGKK EDISG++++RNIDN R +I++ +PN +L +G K ++IW++G +P GS+DLE + ++WG G +I T+L N EERATHTQKT ++
Sbjct: 25 SAPKTVVINRTLPGFGIGRGDTVDSVKSVRVTRSM----ASASGIQQTNAEVNNMLNGREKEKKDMQELNERFANYIEKVRFLEAQNKKLSNELQQLKDRWGKETERVKQTYETELAQLRKLLDDSEKQKAEAEVRISSLEDQLNELQVLLDEANRQHQVDRETIDKLNQQLADYDGEISLLRRRVATFDEERSRDRKEIKRLRDEVNRLRGDLDAETLNHINAENEAQSLREQLEFMKQIHESELKELAALAYRDTTSENREFWKNEMAQALHEIQREYDNKMDVMRSEIESQYSMKVQEARTTNTRDNMELSHLREENKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMEKGRLRTDLANTQATLEEYLKELQTLMDMKLSLELEIAAYRKLLEGEETRINQHHRTQELMSQKSSTVESRSFAVEQQAMHQGQNKQQMS-LIKGEMSAKTTYQRTAKGNVSIQECSADGKYILLENTGKKKEDISGWRLLRNIDNGRQVIKFTVPNGVVL-GDGPHKNIRIWARGLKPPGSDDLEAAESSWGVGANINTSLYNTEGEERATHTQKTVYS 602
BLAST of Intermediate filament protein vs. TrEMBL
Match: W0GAA8 (Intermediate filament b-like protein OS=Macrostomum lignano OX=282301 GN=if1 PE=2 SV=1) HSP 1 Score: 497.278 bits (1279), Expect = 3.591e-166 Identity = 298/584 (51.03%), Postives = 423/584 (72.43%), Query Frame = 2
Query: 23 SARSTVTINKSSP-----------AVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSG----LRNMMEQ---TIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFT 1720
SA TV IN++ P +VK + +S A G Q ++ V++ + GRE+EK++MQ+LNER ANYIEKVRFLEAQNK+L+NEL L++RWGKE ER++ YE E+ QL+KLLD++E ++E +I+ LE+QL+E +DEAN QH +D+E I+KLN+QL++ +GEI LLRRR+A +EER R +K I RLRDE+ R R DLD ET+NHI +E+E QS +++++FMK H++E+KELAALAYRD+T+ENR+FW++EM +L E+Q EYD K++ MR ++E+ +++KVQE R ++ R+ +E HL+EEN R+K Q+++ R++ PE+EA+NAQLER LEELRRE++ + E E+ +LR+DL TQ L+ +KE Q +MDMKLSLELEIAAYRKLLEGEE+R + +M Q T+ S +E + + K QMS L+K E +AK +QRTAKGNV I E SADGK+I+LENTGKK EDISG++++RNIDN R +I++ +PN +L +G K ++IW++G +P GS+DLE + ++WG G +I T+L N EERATHTQKT ++
Sbjct: 25 SAPKTVVINRTLPGFGIGRGDTVDSVKSVRVTRSM----ASASGIQQTNAEVNNMLNGREKEKKDMQELNERFANYIEKVRFLEAQNKKLSNELQQLKDRWGKETERVKQTYETELAQLRKLLDDSEKQKAEAEVRISSLEDQLNELQVLLDEANRQHQVDRETIDKLNQQLADYDGEISLLRRRVATFDEERSRDQKEIKRLRDEVNRLRGDLDAETLNHINAENEAQSLREQLEFMKQIHESELKELAALAYRDTTSENREFWKNEMAQALHEIQREYDNKMDVMRSEIESQYSMKVQEARTTNTRDNMELSHLREENKRIKGQMTDARNRIPELEARNAQLERELEELRREMEEAERECEMEKGRLRTDLANTQATLEEYLKELQTLMDMKLSLELEIAAYRKLLEGEETRINQHHRTQELMSQKSSTVESRSFAVEQQAMHQGQNKQQMS-LIKGEMSAKTTYQRTAKGNVSIQECSADGKYILLENTGKKKEDISGWRLLRNIDNGRQVIKFTVPNGVVL-GDGPHKNIRIWARGLKPPGSDDLEAAESSWGVGANINTSLYNTEGEERATHTQKTVYS 602
BLAST of Intermediate filament protein vs. TrEMBL
Match: Q95P01 (Intermediate filament b OS=Dugesia japonica OX=6161 GN=DjIFb PE=2 SV=1) HSP 1 Score: 479.945 bits (1234), Expect = 2.570e-159 Identity = 278/581 (47.85%), Postives = 413/581 (71.08%), Query Frame = 2
Query: 8 MASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSG-------GIEGNIISK----TAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTF 1717
+ +RT + N+++ +++ EM++SY S P S +HS V++ + GRE+EK E+Q+LN+R ANYI+KVR LE +NKRLT+ELN L+++WGKE RI+ALY+ +M QL++ LD+AEA++++L KIN LE+ + E +++A H D+E I+K+ LS+ E EIG LR+R+++LEEE+ R K I RL+++I + + DLD+ET+ HI + +EVQS D+I+F+K ++E++ELAAL Y+DS +E +DFWR+EM +LR++Q EYD+K+EA+ D+E + +K+QE+R + +E VE++ L+EEN RLK+QL+++R++ PE+EA+N +LER LE LRRE++ + DF+ E+ LR +L Q EL+SI+ E Q ++D KLSLELEI AYRK+LEGEE R N + F +G I + IS+ + KTQ+++++K E +AK + QRTAKGNV I E SADGKFIILENTG +DEDISG+ + RN DN R I+++ I +IL+P G+ ++ KIW++GN+P GSND ECS +NWG G HI T L N EE+ATHTQ+T +
Sbjct: 32 VITRTGPAISTAGNQNASSIRTIEMKKSYGVSATPGATSNIVHSGVNNLMNGREKEKNELQELNDRFANYIDKVRSLEDENKRLTDELNDLKDQWGKETARIKALYDSDMSQLRRSLDQAEASKAQLEMKINTLEDLIQEAHVELNDATQLHTADKETIDKMTSTLSDYEHEIGNLRKRLSSLEEEKIRDNKEIIRLKEDINQLKKDLDKETLEHITAHNEVQSLLDQIEFLKKIFESEIRELAALVYKDS-SETKDFWRNEMAQALRDIQSEYDKKMEALHFDMEAQYTLKIQEVRTNQSKENVETVQLREENTRLKDQLADMRNRLPELEARNNELERLLELLRREIEEKNRDFDMEKANLRKELMNRQSELESILIELQILLDAKLSLELEIIAYRKMLEGEEYRV---NRKSNSTFNQTGRNIDSMDHITRSTISQQQAVPSTKTQVTSIVKGEMSAKTSFQRTAKGNVTIQECSADGKFIILENTGSQDEDISGYILSRNTDNGRIIVKHVISPKSILEPTGKNRYYKIWARGNKPQGSNDAECSESNWGYGAHIVTTLQNSKGEEKATHTQRTVY 608
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: lmna (lamin A [Source:ZFIN;Acc:ZDB-GENE-020424-3]) HSP 1 Score: 125.946 bits (315), Expect = 3.351e-30 Identity = 149/552 (26.99%), Postives = 269/552 (48.73%), Query Frame = 2
Query: 116 GGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEM----IEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIH--LKEENIRLKN---QLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQT-------IFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPT--GSNDLECSSAN-WGTGTHIFTALLNKSNEERA 1693
GG+ + +S A R +EK ++ +LN+RLA YI+KVR LEA+N L + +E ++A YE E+ +K LD R+ L +++K+ E E + N++ D E ++ L L+ + + +LE E K +++L + + L E + + +E+ +Q+ K+E++F K+ ++ E++E + + DS + + S++ +L EL+ +++ +L + ++E +N K++ R S+ R V + H L++ +RL++ QLS L+ + EAK +LE L R + R++++ E E +R QR Q +LD E+Q ++D+KL+L++EI+AYRKLLEGEE R L T + + G ++++T ++ Q +A G + + E +GKF+ L N +D+ + G ++ + I Y+ P LK GQ + IW+ G T +DL + N WG+G T L++ + EE A
Sbjct: 12 GGATTV---LSPARITRLQEKEDLCNLNDRLAVYIDKVRSLEAENAGLRLRITESETEISREMGGMKAAYETELADARKTLDSVAKERARLQLELSKVREDYKE----LKARNSKKEADLEAALARLKDLEALLNSKDASLTTALGEKRSLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYNEELRESKRRHESRIVEIDSGKQQE--FESKLADALTELRGQHEEQLRIYKEEIEKTYNAKLENARQSADRNSHLVGAAHEELQQTRVRLESMSAQLSQLQKQLAAREAKVRELEEALSRERDMMRRRLDEREREMSDMR---QRMQQQLD----EYQELLDIKLALDMEISAYRKLLEGEEERLRLSPSPPPTRKRRLNDTDSEASSVAGGMVTRT----------------RITQQASASGRITVDEVDLEGKFVRLSNKADQDQSL-GHWQVKRQVGTSTPIIYKFPPKFTLKA-GQS--VTIWASGAGGTHNPPSDLVWKTQNSWGSGDLFQTTLISANGEEMA 527
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: vim (vimentin [Source:NCBI gene;Acc:103044141]) HSP 1 Score: 123.635 bits (309), Expect = 7.764e-30 Identity = 128/459 (27.89%), Postives = 214/459 (46.62%), Query Frame = 2
Query: 23 SARSTVTINKSSPAVKEYEMRQSYNFSGAPM------------GGSVQIHSNVSSAV-----EGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDE-------AEAARSELLPKINKLEEQLHE-YLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHL-KEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKT 1321
+A S+ +I + S V+ R +Y+ S AP S ++ +S A+ R EK EMQ LN+R A+YIEKVRFLE QNK L+ EL LR GK R+ LYE EM +L+ +D+ E R L I +L E+L E +Q D NN HG R D+D ++ + E +++S ++EI F+K HD E+ EL A + + D + ++ ++LR+++ +Y+ + E+ + K +L ++ R E+I L K++ + Q+ L + ++ N LER + EL + + ++ +L D++ +DE+ ++E+Q+++++K++L++EIA YRKLLEGEESR + +T+ + IE N+ K KT
Sbjct: 23 TAGSSYSIARYSSPVRS--TRMTYSASSAPAIVSVSRSSRLRSAPSPRLDFALSDAINTEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKSLSAELELLR---GKGTSRVGDLYEEEMRELRLQVDQLIGDKARVEVERDNLGEDIQRLREKLQEEIIQREDAENNLHGF--------------------------------------------------RQDVDNASLARLDLERKLESLQEEIIFLKKLHDEEIAELQAQIHDQHVQIDMDVAKPDLTAALRDVRSQYETLATKNIQEAEDWYKSKFTDLSDAAARSS-EAIRLAKQDANEYRRQVHALTCEVDALKGTNESLERQMRELEDSFGMESSGYQDTIVRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRLCF-PLCAETMLDSRPMIE-NLTKKVVIKT 423
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: vim (vimentin [Source:NCBI gene;Acc:103044141]) HSP 1 Score: 123.25 bits (308), Expect = 8.823e-30 Identity = 130/465 (27.96%), Postives = 218/465 (46.88%), Query Frame = 2
Query: 23 SARSTVTINKSSPAVKEYEMRQSYNFSGAPM------------GGSVQIHSNVSSAV-----EGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDE-------AEAARSELLPKINKLEEQLHE-YLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHL-KEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESR--SGLRNM----MEQTIFKTSGGIEGNIISKTAGKT 1321
+A S+ +I + S V+ R +Y+ S AP S ++ +S A+ R EK EMQ LN+R A+YIEKVRFLE QNK L+ EL LR GK R+ LYE EM +L+ +D+ E R L I +L E+L E +Q D NN HG R D+D ++ + E +++S ++EI F+K HD E+ EL A + + D + ++ ++LR+++ +Y+ + E+ + K +L ++ R E+I L K++ + Q+ L + ++ N LER + EL + + ++ +L D++ +DE+ ++E+Q+++++K++L++EIA YRKLLEGEESR + + N+ M +T+ + IE N+ K KT
Sbjct: 23 TAGSSYSIARYSSPVRS--TRMTYSASSAPAIVSVSRSSRLRSAPSPRLDFALSDAINTEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKSLSAELELLR---GKGTSRVGDLYEEEMRELRLQVDQLIGDKARVEVERDNLGEDIQRLREKLQEEIIQREDAENNLHGF--------------------------------------------------RQDVDNASLARLDLERKLESLQEEIIFLKKLHDEEIAELQAQIHDQHVQIDMDVAKPDLTAALRDVRSQYETLATKNIQEAEDWYKSKFTDLSDAAARSS-EAIRLAKQDANEYRRQVHALTCEVDALKGTNESLERQMRELEDSFGMESSGYQDTIVRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIITPMPNISSINMRETMLDSRPMIE-NLTKKVVIKT 430
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: lmnb1 (lamin B1 [Source:NCBI gene;Acc:103034386]) HSP 1 Score: 121.709 bits (304), Expect = 1.139e-28 Identity = 147/543 (27.07%), Postives = 252/543 (46.41%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHL-KEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQ--------INDFES----ERDKLRSDLQRTQDELDSI-------MKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSN--LMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSK--GNRPTGSNDLEC-SSANWGTGTHIFTALLNKSNEERATHTQKTTF 1717
R +EK E+ +LN+RLA YI+KVR LE++N L +++ E +E ++ALYE E+ ++ LD+ R+ L ++ K+ + + LQ + ++ Q ++ + L+ E + ALE + I L + R L ET+ + E+ QS +E++F K+ + E+K+ T + E+ S Q+EY+ KL D+ H+ +V+ +E +E ++ K EN+RL +++++ + E K A L + ++ IN+ ES E+D R L + E+ I ++E++ ++D+KL+L++EI AYRKLLEGEE R L + + ++ + T GK + + + + + H +A GNV I E DGKFI L NT +D+ + GF+ S Y+ +LK GQ+ + IW+ G + DL S ++WGTG ++ L N EE A + T F
Sbjct: 25 RLQEKEELSNLNDRLAIYIDKVRSLESENSVLHLQISEKEEVRSRELTGLKALYETELADARRSLDDTAKERARLQIELGKIRTEHEQLLQSYAKKDSDLAGCQARLKDVEALLNSKEASLATALSERKALEGSLADLQAQIHELEASLASARKQLGDETLLRVDLENRCQSLVEELEFRKNMFEEEIKD---------TRRRHETRLVEVDSG---RQVEYEFKLAQALTDMRQQHDDQVKVY-----KEEMEQTYMAKLENVRLSSEMNSSSASMAREELKEASLRVESLTAQLSGLQKEARGWQDRINELESALAQEKDLSRRMLADKEREISEIRAKMQLQLEEYEQLLDVKLALDMEINAYRKLLEGEEERLKLSPSPSSRVTVSRASSSRSVRT-TRGKRKRVDVEESEASSSVSIAHSASATGNVCIDELDVDGKFIRLHNTSDQDQPMVGFE--MTRTIGDSSATYKFTPKYVLKA-GQK--VTIWASNAGVSSSPPTDLIWKSQSSWGTGENVKVVLTNGDGEEVAVRS--TVF 542
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Match: lmnb1 (lamin B1 [Source:NCBI gene;Acc:103034386]) HSP 1 Score: 119.398 bits (298), Expect = 6.846e-28 Identity = 146/547 (26.69%), Postives = 261/547 (47.71%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESI----HLKEENIR---LKNQLSNLRSKCPE-MEAKNAQXXXXXXXXXXXXXXQINDFES----ERDKLRSDLQRTQDELDSI-------MKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSN--LMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSK--GNRPTGSNDLEC-SSANWGTGTHIFTALLNKSNEERATHTQKTTF 1717
R +EK E+ +LN+RLA YI+KVR LE++N L +++ E +E ++ALYE E+ ++ LD+ R+ L ++ K+ + + LQ + ++ Q ++ + L+ E + ALE + I L + R L ET+ + E+ QS +E++F K+ + E+K+ L DS + + ++ +L +++ ++D +++ + ++E + K++ +R SS + LKE ++R L QLS L+ + E + +++ ++ R +IN+ ES E+D R L + E+ I ++E++ ++D+KL+L++EI AYRKLLEGEE R L + + ++ + T GK + + + + + H +A GNV I E DGKFI L NT +D+ + GF+ S Y+ +LK GQ+ + IW+ G + DL S ++WGTG ++ L N EE A + T F
Sbjct: 25 RLQEKEELSNLNDRLAIYIDKVRSLESENSVLHLQISEKEEVRSRELTGLKALYETELADARRSLDDTAKERARLQIELGKIRTEHEQLLQSYAKKDSDLAGCQARLKDVEALLNSKEASLATALSERKALEGSLADLQAQIHELEASLASARKQLGDETLLRVDLENRCQSLVEELEFRKNMFEEEIKDTRRRHETRLVEVDSGRQVE--YEFKLAQALTDMRQQHDDQVKVYKEEMEQTYMAKLENVRLSSEMNSSSASMAREELKEASLRVESLTAQLSGLQKEEEETLNRGSSRGGGECQDQARGWQDRINELESALAQEKDLSRRMLADKEREISEIRAKMQLQLEEYEQLLDVKLALDMEINAYRKLLEGEEERLKLSPSPSSRVTVSRASSSRSVRT-TRGKRKRVDVEESEASSSVSIAHSASATGNVCIDELDVDGKFIRLHNTSDQDQPMVGFE--MTRTIGDSSATYKFTPKYVLKA-GQK--VTIWASNAGVSSSPPTDLIWKSQSSWGTGENVKVVLTNGDGEEVAVRS--TVF 561
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: lmnb2 (lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]) HSP 1 Score: 103.99 bits (258), Expect = 1.198e-23 Identity = 137/558 (24.55%), Postives = 281/558 (50.36%), Query Frame = 2
Query: 125 VQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLR-----ERWGKEAER-----IRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRD-----FWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVE-SIH--LKEENIR---LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGL--RNMMEQTIFKTSGGIEGNIISKTAGKTQMS------NLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKG-----NRPTGSNDLECSSANWGTGTHIFTALLNKSNEERAT 1696
+++ S +S R +EK + +LN+RLA YIE+VR LE RL ++ +R E +R +RA Y+ E+ ++++ LD+A A++ L ++ + + E + + + I + QL E + LE E + +++L + ++ L++ET+ + E+ + + ++E++F K H+ E+ E + + R++ D + ++ +L EL+ +++ +++ R +L+ K+++ + ++ ++ SI L+E R L +QLS + ++ + +LE L R + R++++ + E +LR + +D + E++ ++D+KL+L++EIAAYRKLLEGEESR L ++ ++ +TS +I + + ++ ++ +++R+ V+ +A G++ I E +GK + + N +KD+ + G+ +++ D++ I Y+ + +LK GQ + IW+ N P S+ L + ++WGTG I T+LLN EE A
Sbjct: 3 IEMKSLLSPTRVTRLQEKESLVELNDRLAAYIERVRSLEVDKARLLARVSMWEEEEEEQRQKSERQREATGGLRAAYDAELAEVRRALDDALGAKAALEIQLRLAQVERDEGRSRCSKYEQEWNVALGRIRDMEVQLCAKEASLSTASGDKEYLETEVDDLRNQVNQLEGVLVSSKQQLEEETLARVDLENRMLTLQEELEFTKRIHEQEIHE--SRSKRETHVLEIDGGQQQAFEYKLSEALTELRQQHEEQVQLYRQELDQTMRAKLEKSILTPEKQSLDISIREDLREATSRVGTLSSQLSAAQHDLALLQGRVRELEETLSHERDQSKRRLDESDRELAELR-------EVMDEQLIEYEQLLDIKLALDMEIAAYRKLLEGEESRLNLSPEKGVQSSVVQTSTSASHSIRTMPGKRKRVQLEGFVDSMAQSQRS--VSQHASASGSIGIKEVDMEGKSVTMVNNSEKDQPLGGW-VLKRQIEDQAEIAYKFSSRYVLKA-GQ--TVTIWAANAGVSHNPP--SDLLWKTQSSWGTGDDIRTSLLNSDGEEVAV 543
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010102.1 (pep scaffold:Pmarinus_7.0:GL478364:74479:82531:1 gene:ENSPMAG00000009106.1 transcript:ENSPMAT00000010102.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 86.2705 bits (212), Expect = 4.375e-18 Identity = 84/364 (23.08%), Postives = 168/364 (46.15%), Query Frame = 2
Query: 149 SAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGID-EANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRS 1234
S + R +EK ++ LN+R AN+I+KVRFLE QNK L + L+E+ I ++E ++ L++ LD + +L + +++ + ++ + E NN++ + E + + D+D ++ + E+ +Q DEI+F++ E+ EL A + + + E + ++ + +++ +Y+ R + + + K Q L S R E + E L Q+ R++ ++ + A+LE + E + I + ++ +L ++ + + E+ ++E+Q +M++KL+L++EI YRKLLEGEESRS
Sbjct: 132 SVLPTRTQEKEAIKHLNDRFANFIDKVRFLEQQNKVLEAQWYALQEKT-TTGSSIDEMFEAYINGLRRQLDGLGHDKGQLNGNLGQMQAVVEDFRAKYEAEINNRNAAEGEFVV-------------------------------------------VKKDVDGAYLSKVELETRLQGLVDEINFLRSIFTQELSELEAQIKHTNVLVEIDNSRNLDVDGIIADVRQQYETIAARSRAEADAFYQDKFQSLHSDSGRNDEELRMTRNEITELNRQMQRFRAEMEALKKQRAKLESAIAEAEGRGEADIREAKAAIAQLEEEIHKAKQEMARHVREYQELMNVKLALDIEIVTYRKLLEGEESRS 451
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: lmnb2 (lamin B2 [Source:ZFIN;Acc:ZDB-GENE-990630-13]) HSP 1 Score: 80.1073 bits (196), Expect = 1.841e-16 Identity = 85/321 (26.48%), Postives = 158/321 (49.22%), Query Frame = 2
Query: 782 WRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQ----ELRHSSPREGVESIHLKEENIR---LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQ--TIFKTSGGIEGNIISKTAGKTQMSNLMKNERNA----KVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKG-----NRPTGSNDLECSSANWGTGTHIFTALLNKSNEER 1690
+ S++ +L++L+ E+ +++ + +LEN++ K++ L+ +S GV L E +R L NQL L+ + EAK LE L R RQ+ D + E ++R + + + E++ ++++KL+L++EI+AYRK+LEGEE R L T+ ++S + +T+G + L E A V + +A G + + E A G+F+ L N ++D+ + G+ ++ + + I Y+ TI+K + IW+ G N P + L + WG+G + +LN + EE+
Sbjct: 26 YESKLAQALQDLRAEHMDQVQLYKNELENNYKTKMENAKMSLQQNSTMSGVVQEELTESRMRIETLNNQLGALQRQVAGAEAKIRDLEETLRRERDSHWRQLADKDRELTEIR-------QAMTAQINEYEQLLEVKLALDMEISAYRKMLEGEEERLHLSPSPSSRVTVTRSSETV------RTSGGAKRKRLDVQESEATSSVSVTQRASASGVIAVDEIDAGGRFVKLINDSQQDQAVGGW-TVKRSIHGHADIVYKFTGRTIVKA---GDSITIWAGGAGVQHNPP--RDLLMKQHSTWGSGDEVRVVVLNANGEEQ 327
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000007836.1 (pep scaffold:Pmarinus_7.0:GL477602:49686:51609:1 gene:ENSPMAG00000007086.1 transcript:ENSPMAT00000007836.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 77.0258 bits (188), Expect = 1.474e-15 Identity = 99/380 (26.05%), Postives = 185/380 (48.68%), Query Frame = 2
Query: 152 AVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERW-GKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLR---DEI-KRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAA-LAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIR-LKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSI--------------MKEFQNVMDMKLSLELEIAAYRKLLEGEES 1228
A++ R EK +QDLNER + YI KV LE NK L ++++ L++R G I +YE E+ +L++L++ ++ + M+QE +E+ ++L E G+ RLR DE+ K ++D ++ +++E ++Q+ DEI F+K +H+ EM +L A + + E D+ + + +LRE++ ++ ++G +E + Q S +E E+ +E +R K +LS R K E + L R L+RQ+N+ E ER ++ D+ QD ++ + ++E+Q+++++K++L++EI+AYR+LL+GE+S
Sbjct: 16 AMQARVNEKHLLQDLNERFSAYITKVHDLEQNNKDLDDQISALKQRQSGTTRSGINDVYECEIKELRELIEHINGEKTSV-------------------------QMEQERLEEDIKKLEEKCGQEV---------------------RLRSDADELFKMFSKNIDAASLVRMSNEKQIQALVDEIAFLKKNHEEEMDQLMAQIKSSTVSVEKVDYEEAGIAEALREIRGKF-----QLKGQVEGAAEERFQ----SKFKELTEAAEQNDEALRSTKEELSIYRHKLNE----RSTELDALLGTRDSLERQLNEME-ERHQI--DVGNLQDVMEQLQGELRDSKWAVARRLREYQDLLNVKMALDIEISAYRRLLDGEDS 333
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Match: ENSPMAT00000010061.1 (pep scaffold:Pmarinus_7.0:GL478364:48285:55057:1 gene:ENSPMAG00000009104.1 transcript:ENSPMAT00000010061.1 gene_biotype:protein_coding transcript_biotype:protein_coding) HSP 1 Score: 77.0258 bits (188), Expect = 3.304e-15 Identity = 90/364 (24.73%), Postives = 162/364 (44.51%), Query Frame = 2
Query: 149 SAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERW--GKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESR 1231
S + R +EK ++ LN+R AN+I+KVRFLE QNK L + L+E+ G + + Y IN L QL AN G Q ++E R E E S +T DE + D+D ++ + E+++ +++I+FM+ E+ EL A + + + E + ++ + +++ +Y+ R + + + K Q L S R E + E L Q+ R++ ++ + A+LE + E + I + ++ +L ++ + + E+ ++E+Q +M++KL+L++EI YRKLLEGEESR
Sbjct: 130 SVLPTRTQEKEAIKHLNDRFANFIDKVRFLEQQNKVLEAQWYALQEKTTTGSSVDEMFEAY------------------------INGLRRQLDGLGHENGRANGDLGQMQAVVEDF-RAKYEAE------------------ISLRT--EREDEFVFAKKDVDGAYLSKVELEAKLDGLQEDINFMRSIFAQELSELEAQIKHTNVLVEIDNSRNLDVDGIIADVRHQYETIAARSRAEADAFYQDKFQSLHSDSGRNDEELRVTRNEITELNRQMQRFRAEMEALKKQRAKLESAIAEAEGRGEADIREAKAAIAQLEEEIHKAKQEMARHVREYQELMNVKLALDIEIVTYRKLLEGEESR 448
BLAST of Intermediate filament protein vs. Ensembl Nematostella
Match: EDO37225 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7SGD1]) HSP 1 Score: 138.658 bits (348), Expect = 9.147e-35 Identity = 144/559 (25.76%), Postives = 262/559 (46.87%), Query Frame = 2
Query: 110 PMGGS-VQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEM----KELAALAYRDSTAEN--RDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESER--DKLRSD---------LQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSN--LMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSK---GNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTF 1717
P+ S + S SA R +EK E+Q LN+RLA YI++V+ LE +N +L +E+ R+ +E + +++LYE E+ ++LLDE +++ + +K E+ D+ ++ + + + L + E ++ + LE + L+D +K + L+QET+ + E+ QS ++E +F K +D E+ +L + + E +D + M L+EL+ +YD + + + E ++ K +ELR R+ L+EEN L + L S+ ++EAKN L +++D + R DK + D + + +D +++++++M +K++L++EI AYRKLLE EE+R + + GG S + +T+ N E + + TA+G + E DGK+I + N+G+KDE + G+ I+ Y+ +LK Q + +WS G S+ + +WG+G TAL+N EE AT ++ F
Sbjct: 18 PVSSSRIMGSSPPGSAKFTRAQEKAELQHLNDRLATYIDRVKNLEQENSKLRSEVTVSRKTVEREVDSMKSLYETELADARRLLDETAKEKAKQQIESSKNSNDAQEFKNKFDKEAAARKKAEKELNDVRKLLHDKENQLTRRNQEALNLESVLRELQGECEELKDALKAAKYALEQETLTRVDLENRCQSLQEEQNFKKQMYDKELSDIRSQLKTVETKRVVVETDYKDKYEGLMAEKLQELREDYDSDARSFKEETELLYSSKFEELRIQRERDSEALAKLREENRNLSKSVDELSSQVHQLEAKN-----------NALVSRVSDLQGLRAQDKEKHDNEILLRENEIAELRTSIDDALRDYEDLMGVKVALDMEITAYRKLLESEETRLEITPPASPVL----GG------SSSVSQTRRGNKRARTEETESTMTTTTTAEGAIQFTEADPDGKYIKIYNSGEKDEALGGW-TIQRQVGTEDPSVYKFTPKYVLK---SQSHVTVWSAQGGGTHKPPSDLVFKQLPSWGSGNEARTALVNAGGEEMATLLEEKVF 551
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: ENSORLT00000011270.2 (lamin-A [Source:NCBI gene;Acc:101160250]) HSP 1 Score: 133.265 bits (334), Expect = 2.334e-32 Identity = 148/547 (27.06%), Postives = 258/547 (47.17%), Query Frame = 2
Query: 164 REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELA----ALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREG--VESIHLKEENIRLK-----NQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNA-------------KVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSK---GNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFTN 1723
R +EK ++ +LN+RLA YI+KVR LEA+N L + +E ++ YE E+ +K LD R+ L ++ KL E E + + + ++ L ++ + + LE E K +S+L + R L E + + E+ +Q+ K+E++F K+ H E++E + + + +DF S++ +L E++ +++ +++ + ++E +N K++ R S+ R V + H + + IR + QLS L+ + EAK LE L R R + D E E +R QR Q +LD E+Q ++D+KL+L++EI AYRKLLEGEE R L T S G + +A + NE ++ ++ Q +A G V + E DGK++ L N +D+++ ++ +R + I ++ P LK GQ+ + IW+ G+ S+ + S +WGTG T L++ S EE A +K T+T+
Sbjct: 23 RLQEKEDLSNLNDRLAVYIDKVRSLEAENACLRVRITESETEVTRELTGLKNAYEAELADARKTLDSVAKERARLQLELGKLREDHKELKARNTKKESDLAAALQRLKDLEALMNSKDASLTTALGEKRNLEVENRDLKAQVSKLDTGLGDARKQLQDEMLRRVDGENRIQTLKEELEFQKNLHSEELQETKRRHESRMVEMNNGQQQDF-ESKLAEALVEMRSQHELQIQLYKEEIEKTYNAKLESARQSADRSSHLVGAAHEELQQIRTRLESTSAQLSQLQKQLAAREAKIRDLEDALTRERDSTRRLLADKEREMADMR---QRMQQQLD----EYQELLDVKLALDMEICAYRKLLEGEEERLRLSPSPPPTRVTGSRSSVGRSVHSSAQSSPAKRRRPNEADSEASSYGGGALARTRITQQASASGRVTVDEVDLDGKYVRLSNKADEDQNLGSWQ-VRRQVGSGTPILFKFPAKFTLKA-GQR--VTIWASNAGGSHNPPSDLVWKSQPSWGTGDQFQTTLISASGEEMA--MRKVTYTH 555
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: lmnb2 (lamin B2 [Source:NCBI gene;Acc:101158263]) HSP 1 Score: 122.479 bits (306), Expect = 5.345e-29 Identity = 144/544 (26.47%), Postives = 257/544 (47.24%), Query Frame = 2
Query: 161 GREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL-----AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFE----SERDKLRSDLQRTQDE-------LDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAK------VNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSK-GNRP--TGSNDLECSSANWGTGTHIFTALLNKSNEER----ATHTQ 1705
R +EK+++Q LN+RLA YIE+VR LE +N RL +++ E +E ++ALYE E+ L+++LDE R+ L + K + L E + + L QL + E + + AAL E G K +++ D + L+ ET+ + E+ QS +++DF ++ D EM+E + DS A R + ++ +L++L+ ++D ++ + +LE K++ SS +EE ++++ +L + ++ + + +I + E +ERD+ R ++R + E +D+ + E+Q ++D+KL+L++EI AYRKLLEGEE R L + + S + K + S + E + V+ + T+ G+V I T DG + L N +D+ + ++ +R ++ + Y+ +LK GQ + +WS +P S L S A+WGTG+ I T+L++ S EE AT TQ
Sbjct: 27 SRLQEKQDLQQLNDRLAVYIERVRALELENDRLMVKVSEKEEVTTREVTGLKALYEAELADLRRVLDETAKERARLQIDLGKAQADLEEATRSAKKKEADLAAAVSRANSLEGQLHKSEAALSTALSQSAALTSELGEVKSLLAKAEDGHAVAKRQLEAETLMRVDLENRCQSLSEDLDFRRNMFDEEMRESRRHQEQRIVEVDSGA--RQEYEFKLTQALQDLRKQHDEQVSFYKEELEKTFQAKLENAHVSSEMSNAAMDAAREELQESRSRIESLSYQLSSLQKQVG-----------TSEDRIRELEEILSAERDRHRRAMERKEQEMSELREGMDAQLSEYQELLDVKLALDVEINAYRKLLEGEEHRLKLSP---SPSARVTVSRVTGSSSSRSTKRKWSEVEAQEEAGQAEEQLLVSEEATSTGSVSICPTDMDGTSVKLTNETDQDQPLGSWR-LRRQVDNGEEVVYKFSPKFVLKA-GQS--VTVWSADAGKPHNPPSELLWKSQASWGTGSTIVTSLIDSSGEEVARRCATRTQ 550
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: viml (vimentin [Source:NCBI gene;Acc:101163931]) HSP 1 Score: 114.775 bits (286), Expect = 5.243e-27 Identity = 119/436 (27.29%), Postives = 202/436 (46.33%), Query Frame = 2
Query: 53 SSP--AVKEYEMRQSYNFSGAPMGGS----VQIHSNVSS-AVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDE-------AEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKEL--AALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLR-NMMEQTIFKTSGGIEGNIISKT 1309
S+P AVK +R S + P S +H V+S + R EK +MQ LN+R A+YIEKVRFLE QNK L EL LR GK RI LYE EM +L++ +D+ E R L I +L E+L + + +EA ++ R D+D + + E +++S ++EI+F+K HD EM E + + D + ++ ++LR+++++Y+ + E + K +L ++ R K+E + Q+ L + ++ N LER L E+ + N ++ +L D+ +DE+ ++E+Q+++++K++L++EIA YRKLLEGEESRS L ++ + KT +G +I+++
Sbjct: 46 SAPVYAVKTQRLRSS---AAMPRLASESLDFSLHDAVNSEFLTNRTNEKAQMQSLNDRFASYIEKVRFLEQQNKILLAELEQLR---GKGTSRIGDLYEDEMRELRRQVDQLTNEKARVEVHRDNLADDIERLREKLRDEISQREEAEAT-------------------------------------------------MQSFRQDVDSAALARLDLERKIESLQEEINFLKKLHDEEMLEFQSQVQQQQQHVQVDMDVAKPDLTAALRDVRLQYENLATKNIQESEEWYKSKFADLTEAAARNNEALRMAKQEANDYRRQVQALTCEVDALKGTNESLERQLREMEENFSLESNGYQDTIGRLEEDMHNIKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRSQLETTTTKKVLIKTIETRDGQVINES 426
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: desmb (desmin [Source:NCBI gene;Acc:101174730]) HSP 1 Score: 112.079 bits (279), Expect = 7.352e-26 Identity = 110/426 (25.82%), Postives = 189/426 (44.37%), Query Frame = 2
Query: 38 VTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEG--------------------REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLD-------EAEAARSELLPKINKLEEQLHE-YLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESR 1231
VT S+PA R S +F P+G S ++V + G R EK E+Q LN+R A+YIEKVRFLE QN+ L+ E+ LR G+E RI LYE EM +L++ ++ E R L ++KL+ +L E LQ D NN R D+D T+ + E +++ ++EI F+K H+ E++EL D + ++ ++LR+++ +Y+ D E+ + KV +L + + ++E + ++Q+ + ++ N L R + EL + F+ +L +++ +DE+ ++E+Q+++++K++L++EIA YRKLLEGEESR
Sbjct: 50 VTRTSSAPAY-----RVSSSFVNRPLGTS---RTSVGRSYAGMGETLDFSLADALNQEFLATRTNEKAELQHLNDRFASYIEKVRFLEQQNQALSVEVERLR---GREPTRIADLYEEEMRELRRQVEILTNQRSRVEVERDNLAEDLDKLKLRLQEEILQKEDAENNLAAF--------------------------------------------------RADVDAATLARLDLERRIETLQEEIAFLKKIHEEEIRELQTQMQETQVQIQMDMSKPDLTAALRDIRTQYEGIAAKNIADAEDWYKSKVSDLNQAVSKNNEALKQARQETMEFRHQIQAYTCEIDSLKGTNESLMRQMRELEDRHGCEAARFQDTIARLEAEIANMKDEMARHLREYQDLLNIKMALDVEIATYRKLLEGEESR 414
BLAST of Intermediate filament protein vs. Ensembl Medaka
Match: desmb (desmin [Source:NCBI gene;Acc:101174730]) HSP 1 Score: 111.694 bits (278), Expect = 1.017e-25 Identity = 110/426 (25.82%), Postives = 189/426 (44.37%), Query Frame = 2
Query: 38 VTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEG--------------------REREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLD-------EAEAARSELLPKINKLEEQLHE-YLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESR 1231
VT S+PA R S +F P+G S ++V + G R EK E+Q LN+R A+YIEKVRFLE QN+ L+ E+ LR G+E RI LYE EM +L++ ++ E R L ++KL+ +L E LQ D NN R D+D T+ + E +++ ++EI F+K H+ E++EL D + ++ ++LR+++ +Y+ D E+ + KV +L + + ++E + ++Q+ + ++ N L R + EL + F+ +L +++ +DE+ ++E+Q+++++K++L++EIA YRKLLEGEESR
Sbjct: 50 VTRTSSAPAY-----RVSSSFVNRPLGTS---RTSVGRSYAGMGETLDFSLADALNQEFLATRTNEKAELQHLNDRFASYIEKVRFLEQQNQALSVEVERLR---GREPTRIADLYEEEMRELRRQVEILTNQRSRVEVERDNLAEDLDKLKLRLQEEILQKEDAENNLAAF--------------------------------------------------RADVDAATLARLDLERRIETLQEEIAFLKKIHEEEIRELQTQMQETQVQIQMDMSKPDLTAALRDIRTQYEGIAAKNIADAEDWYKSKVSDLNQAVSKNNEALKQARQETMEFRHQIQAYTCEIDSLKGTNESLMRQMRELEDRHGCEAARFQDTIARLEAEIANMKDEMARHLREYQDLLNIKMALDVEIATYRKLLEGEESR 414
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000046289.1 (SMESG000046289.1) HSP 1 Score: 1045.8 bits (2703), Expect = 0.000e+0 Identity = 566/572 (98.95%), Postives = 568/572 (99.30%), Query Frame = 2
Query: 8 MASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFTN 1723
MASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGEIGLLRRRIAALEEERGRSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQLERFLEELRR+LDRQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTA +SNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKIIRNIDNDRSIIRYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFTN
Sbjct: 1 MASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGEIGLLRRRIAALEEERGRSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQLERFLEELRRDLDRQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGNIISKTA----VSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKIIRNIDNDRSIIRYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFTN 568
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000062826.1 (SMESG000062826.1) HSP 1 Score: 449.129 bits (1154), Expect = 7.099e-151 Identity = 263/580 (45.34%), Postives = 401/580 (69.14%), Query Frame = 2
Query: 8 MASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEG-NIISKT---------AGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTF 1717
+ +RT + + ++ EM +SY S P S +H+ V++ + GRE+EK E+QDLN+R ANYI+KVR LE +NKRL++EL L+++WGKE RI+ Y+ +M QL++ LD+AE A++++ KIN LE+ + E +++A H D+E I+K+ LS+ E EI LR+R+ LEEE+ R K I RL++E+ + DL++ET+ HI + +E+QS D+I+F+K ++E++ELA+L Y+DST EN+DFWR+EM +LR++Q EYDRKL+ + D+E + +K+QE+R + +E VE++ L+EEN RLK+QL+ +R++ PE+EA+N +LER LE LRRE++ + +F+ E++ LR +L + EL+ I+ E Q ++D KLSLELEI AYRK+LEGEE R ++ Q + +T ++ + +++T + KTQ+++++K E +AK + QRTAKGNV I E S DGKFIILENTG ++EDISG+ + RN DN R +I++ IP+ TIL+P G+ ++ KIW++GNRP GS D ECS +NWG G I T L N EE+ATHTQ+T +
Sbjct: 32 VITRTGPTVSTVGTQGGSNIRTIEMSKSYGLSSTPGATSNIVHNGVNNLMNGREKEKNELQDLNDRFANYIDKVRNLEDENKRLSDELVDLKDQWGKETARIKTFYDNDMIQLRRSLDQAEGAKAQMEMKINTLEDLILEAQTELNDATQLHLADKETIDKMASTLSDYEHEIANLRKRLGGLEEEKVRDNKEIMRLKEELNLLKQDLEKETLEHITAHNELQSLVDQIEFLKKIFESEVRELASLVYKDST-ENKDFWRNEMAQALRDIQTEYDRKLDTLHYDMEAQYTLKIQEIRTTQSQENVETVQLREENTRLKDQLAEMRNRLPELEARNNELERLLELLRREIEEKNREFDLEKNNLRKELLNRKAELEGILIELQILLDAKLSLELEIIAYRKMLEGEEYRVNRKS--NQNLNQTGRSVDTMDHVTRTSISQQHAAPSTKTQVTSVIKGEMSAKTSFQRTAKGNVTIQECSPDGKFIILENTGSQEEDISGYILQRNTDNGRIVIKHVIPSKTILEPTGKNRYYKIWARGNRPQGSGDPECSESNWGFGAQIVTVLQNSKGEEKATHTQRTVY 608
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000046938.1 (SMESG000046938.1) HSP 1 Score: 328.946 bits (842), Expect = 3.561e-104 Identity = 225/591 (38.07%), Postives = 355/591 (60.07%), Query Frame = 2
Query: 5 KMASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLEEQLHEYLQGIDEANNQHGMDQEMIEKLN---RQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKE----FQNVMDMKLSLELEIAAYRKLLEGEESRSGLRNMMEQTIFKTSGGIEGN------------IISKTAGKTQMSNLMKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTTFT 1720
K S S++ T+ IN+++ V +++S+N+ + + +V + + RE++K +M++LNE+LA YIE+VRFLEAQNK+ + EL+ L+++WGK+ E ++ Y IEM LKKLL EAE R + + LE HE + DE N M+ E+++K+ +LSE E I +L++R+ LEE + + K I +LRDEI+ + DL+ +T+ ++ E E+Q + DE++F+K H ++ EL+ALAYRD+T +N+DFW++E+ +++++Q +YD +++ +R +E+ + V++Q+ + + + +E +K+EN R+KN+ + RS+ P++E K LER L +LR E + D+E E +L E DSI+ E + ++D KLSL+LEIAAYRKLLEGEE+R + + +G + N I+ K +T S E +AK RT KGNV I E + DG+ IILEN GK E+IS I R+ID+ R ++++ IP T + K +KIW+KG +P G+NDLE NWG G+ I T L N EERAT+TQKT T
Sbjct: 37 KTVSPISSQRTIIINRTNNQVPSQIIQRSFNYETRVIPSKSAAYGDVGNYKKEREKDKSDMRNLNEKLAGYIEQVRFLEAQNKKQSGELSNLKDKWGKDTEEVKIRYNIEMQNLKKLLTEAEKNRGKTEFDLINLE---HELQKAKDELNLSRDMENELLKKIEICEEKLSEEEALISMLKKRLGKLEEHKAKDKMEILKLRDEIQNLQRDLNNQTIKYLNVECELQGKLDEMEFLKQIHQTQLNELSALAYRDTTKDNKDFWKAEISLAMQDIQSDYDDRIQMLRSSIESQYGVRMQDTKTENAKLLMELNSIKDENKRIKNEWGSTRSRIPDLENKIISLERALVDLRHESEENKRDYEIELSSKTKELT----EADSIIHETEIQLKTLLDDKLSLQLEIAAYRKLLEGEETR--WTDKSSTVVVHENGTLTSNLKTFVNQVKQETIVQKKVQETNTS--ATGEISAKSTFNRTTKGNVSILECTTDGRCIILENIGKNKEEISDMLINRDIDHGRQLLKFVIPKKTFMDG---NKTIKIWAKGFKPVGTNDLEIPETNWGMGSDIHTILYNAVGEERATYTQKTVTT 613
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 285.034 bits (728), Expect = 8.589e-87 Identity = 202/558 (36.20%), Postives = 319/558 (57.17%), Query Frame = 2
Query: 101 SGAPM--GGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLE---EQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESR--------SGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNLMKNERNAKVNHQ-------RTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTT 1714
S P+ G SV + S V+S +GR +EKR++QDLNER A+YIEK RFLEAQNK+L NE+ L+ ++ +I+ +YE+E++QL+ L++E+E +++ L +++ LE + L + L +++ N+Q+ + I+K + +S EGE+ LRR + + K+ + LRD++K+ R D ++E + H+ E E+QS K+ ++F K HD E+KELA +AYRD T EN +W+SEMG +LR++Q EY+ KL ++ +LE + +++QE+R S R+ VE+ H KEEN R+K+Q+ ++RS+ ++E +NA+ E L +R + E + L+ L TQ EL + E Q+++D KL LELEIAAY KLLE EESR + L M T +GG G+ + S ++Q RT KGN+ I ET G IILEN G K E + G I R +D + I + I L G++ + + +KG ++E A+WG G ++ T L + E+A H Q+ +
Sbjct: 129 SNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMSFTSSSGAGGAGGSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNA-GEK--ISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVS 680
BLAST of Intermediate filament protein vs. Planmine SMEST
Match: SMESG000030598.1 (SMESG000030598.1) HSP 1 Score: 283.108 bits (723), Expect = 3.961e-86 Identity = 201/559 (35.96%), Postives = 324/559 (57.96%), Query Frame = 2
Query: 101 SGAPM--GGSVQIHSNVSSAVEGREREKREMQDLNERLANYIEKVRFLEAQNKRLTNELNTLRERWGKEAERIRALYEIEMDQLKKLLDEAEAARSELLPKINKLE---EQLHEYLQGIDEANNQHGMDQEMIEKLNRQLSECEGXXXXXXXXXXXXXXXXXXSKKTISRLRDEIKRTRMDLDQETMNHIASESEVQSRKDEIDFMKDSHDNEMKELAALAYRDSTAENRDFWRSEMGSSLRELQIEYDRKLEAMRGDLENHHNVKVQELRHSSPREGVESIHLKEENIRLKNQLSNLRSKCPEMEAKNAQXXXXXXXXXXXXXXQINDFESERDKLRSDLQRTQDELDSIMKEFQNVMDMKLSLELEIAAYRKLLEGEESR--------SGLRNMMEQTIFKTSGGIEGNIISKTAGKTQMSNL--------MKNERNAKVNHQRTAKGNVIIHETSADGKFIILENTGKKDEDISGFKXXXXXXXXXXXXXYEIPNSTILKPEGQQKFLKIWSKGNRPTGSNDLECSSANWGTGTHIFTALLNKSNEERATHTQKTT 1714
S P+ G SV + S V+S +GR +EKR++QDLNER A+YIEK RFLEAQNK+L NE+ L+ ++ +I+ +YE+E++QL+ L++E+E +++ L +++ LE + L + L +++ N+Q+ + I+K + +S EGE+ LRR + + K+ + LRD++K+ R D ++E + H+ E E+QS K+ ++F K HD E+KELA +AYRD T EN +W+SEMG +LR++Q EY+ KL ++ +LE + +++QE+R S R+ VE+ H KEEN R+K+Q+ ++RS+ ++E +NA+ E L +R + E + L+ L TQ EL + E Q+++D KL LELEIAAY KLLE EESR + L M T +GG G+ + + S+ + ++ ++ +RT KGN+ I ET G IILEN G K E + G I R +D + I + I L G++ + + +KG ++E A+WG G ++ T L + E+A H Q+ +
Sbjct: 129 SNIPLIRGDSVALQSGVTSMKKGRAQEKRDLQDLNERFASYIEKARFLEAQNKQLANEIEKLKGGTVQDNSKIKEIYEVEINQLRALVNESEKSKAPLEAQVDSLEYEIDDLRKRLMMLEDINSQY---KSTIDKQRKDISGFEGELVELRRFKGTQGADVNKEKEEVKTLRDDLKKLRQDYEKEALAHLTLEHELQSLKEALEFEKQIHDTEVKELATVAYRDPTKENMVYWQSEMGRALRDIQTEYENKLTGIKQELEASYGLQMQEIRTSKTRDNVETTHYKEENSRIKSQIQSMRSRIADLEMQNAEYEHNLNNIRANYEETQRSLELQLLYLQEQLTGTQQELTVALTELQSLLDAKLGLELEIAAYAKLLEFEESRVNFSADGNATLSQFMSFTSSSGAGGGGGSSGFGSGSRIGGSSGFSGMTERETTDYQSKRMKFRRTTKGNISIAETDLIGSTIILENIGTKVESLEGMTIKRVVDGSENKISFTISGKVNLNA-GEK--ISLCAKGKITGKGREIEIDDASWGVGNNVVTTLCDSEGAEKAAHYQEVS 681 The following BLAST results are available for this feature:
BLAST of Intermediate filament protein vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 5
BLAST of Intermediate filament protein vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Intermediate filament protein vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Intermediate filament protein vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Intermediate filament protein vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 5
BLAST of Intermediate filament protein vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30028789 ID=SMED30028789|Name=Intermediate filament protein|organism=Schmidtea mediterranea sexual|type=transcript|length=1877bpback to top protein sequence of SMED30028789-orf-1 >SMED30028789-orf-1 ID=SMED30028789-orf-1|Name=SMED30028789-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=573bp MASRTSARSTVTINKSSPAVKEYEMRQSYNFSGAPMGGSVQIHSNVSSAVback to top Annotated Terms
The following terms have been associated with this transcript:
|
