INO80 complex subunit B

Overview
NameINO80 complex subunit B
Smed IDSMED30028761
Length (bp)1248
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of INO80 complex subunit B (SMED30028761) t-SNE clustered cells

Violin plots show distribution of expression levels for INO80 complex subunit B (SMED30028761) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of INO80 complex subunit B (SMED30028761) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for INO80 complex subunit B (SMED30028761) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30028761

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 2

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30028761SMESG000037125.1 SmedASXL_001166SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
muscle cellSMED30028761SMESG000037125.1 dd_Smed_v4_6244_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of INO80 complex subunit B vs. Ensembl Fly
Match: CG10395 (gene:FBgn0033019 transcript:FBtr0347210)

HSP 1 Score: 47.7506 bits (112), Expect = 9.095e-6
Identity = 55/208 (26.44%), Postives = 92/208 (44.23%), Query Frame = 2 
Query:  269 SSGEEEKKSEIVLEGEDEWSDKECRYLAQMNDPRFMTARQRSLLDKRSGGRESNLEEMNFIDQIPALSN--RSALRPTGKAGDHXXXXXXXXXXXXXXXXXKLLKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDLCPIWQPGKPVLPATVQ----------CSADGCTNSKRYSCARTGRPLCYRIECYR 856
            +S EE++    +  G+ +  D+E   L ++ DP+ MTARQR++ +     R  + E   FI+++ AL +  +   +P      H+  +K +++++Q     +  K+    RL K+          ++   SIR  S Q+P  P     S      +  P     P  VQ          C   GC N K Y+C+ T  PLC  + CYR
Sbjct:   77 TSSEEDRWLTAIETGKLDVVDEE---LKKIKDPKLMTARQRAIYE-----RTQDSEINGFIEELIALPSGYKEKEKPQTAEEIHKALLKSQKRKQQADERREKDKLKTMERLLKK-------QATNRDRISIRNKSLQQPSYPKITYISAVTGNYVIVPPGYEYPLKVQLPRTPPPSQVCFVSGCENRKTYNCSTTNVPLC-SLTCYR 268
[Close]
BLAST of INO80 complex subunit B vs. Ensembl Fly
Match: CG10395 (gene:FBgn0033019 transcript:FBtr0347209)

HSP 1 Score: 47.7506 bits (112), Expect = 9.095e-6
Identity = 55/208 (26.44%), Postives = 92/208 (44.23%), Query Frame = 2 
Query:  269 SSGEEEKKSEIVLEGEDEWSDKECRYLAQMNDPRFMTARQRSLLDKRSGGRESNLEEMNFIDQIPALSN--RSALRPTGKAGDHXXXXXXXXXXXXXXXXXKLLKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDLCPIWQPGKPVLPATVQ----------CSADGCTNSKRYSCARTGRPLCYRIECYR 856
            +S EE++    +  G+ +  D+E   L ++ DP+ MTARQR++ +     R  + E   FI+++ AL +  +   +P      H+  +K +++++Q     +  K+    RL K+          ++   SIR  S Q+P  P     S      +  P     P  VQ          C   GC N K Y+C+ T  PLC  + CYR
Sbjct:   77 TSSEEDRWLTAIETGKLDVVDEE---LKKIKDPKLMTARQRAIYE-----RTQDSEINGFIEELIALPSGYKEKEKPQTAEEIHKALLKSQKRKQQADERREKDKLKTMERLLKK-------QATNRDRISIRNKSLQQPSYPKITYISAVTGNYVIVPPGYEYPLKVQLPRTPPPSQVCFVSGCENRKTYNCSTTNVPLC-SLTCYR 268
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BLAST of INO80 complex subunit B vs. TrEMBL
Match: A0A2R5LEP8 (Putative ino80 complex subunit b OS=Ornithodoros turicata OX=34597 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.417e-8
Identity = 59/181 (32.60%), Postives = 97/181 (53.59%), Query Frame = 2 
Query:  317 DEWSDKECRYLAQMNDPRFMTARQRSLLDKRSGGRESNLEEMNFIDQIPALSNRSALRPTGKAGDHXXXXXXXXXXXXXXXXXKLLKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDLCPIWQPGKPVLPATVQCSADGCTNSKRYSCARTGRPLCYRIECYRS 859
            DE  D+    L +M DP  MTARQR+LL+ ++  +E   EE+    Q P +S     R   +A   ++  +E+++++++ T+E+LLK +  SRL  R R++ + +D  +    ++  S      P  V+F      P+     P  PA   C   GC N +RYSC++TG PLC  +ECY++
Sbjct:  113 DEVDDE----LRKMKDPTLMTARQRALLESKAQTKER--EEVPVAAQPPQMSEEMLQRRMQRAKKRKQQAEEKKEKDKKQTIERLLKKS-DSRL--RGRKMTRKSDTPRVS-LLQRTSGTLMSFPVGVSF------PLTSRTAPEYPAKKMCGIKGCPNPRRYSCSKTGLPLCS-LECYKT 276
[Close]
BLAST of INO80 complex subunit B vs. TrEMBL
Match: A0A293LKQ1 (PAPA-1 domain-containing protein (Fragment) OS=Ornithodoros erraticus OX=265619 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.495e-8
Identity = 62/181 (34.25%), Postives = 95/181 (52.49%), Query Frame = 2 
Query:  317 DEWSDKECRYLAQMNDPRFMTARQRSLLDKRSGGRESNLEEMNFIDQIPALSNRSALRPTGKAGDHXXXXXXXXXXXXXXXXXKLLKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDLCPIWQPGKPVLPATVQCSADGCTNSKRYSCARTGRPLCYRIECYRS 859
            DE  D+    L +M DP  MTARQR+LL+ ++  +E   E +    Q P +S     R   +A   ++  +E+++++++ T+E+LLK +  SRL  R R+L + +D     P + +V        SY A     L P   P     PA   C   GC N +RYSC++TG PLC R ECY++
Sbjct:  113 DEVDDE----LRKMKDPTLMTARQRALLESKAQTKERE-ETIPAAAQPPQMSEEMLQRRMQRAKKRKQQAEEKKEKDKKQTIERLLKKS-DSRL--RGRKLARKSDT----PRVSLVQRASGTLLSYPAGVPFPLAPKVAPE---YPAKKMCGIKGCPNPRRYSCSKTGLPLCSR-ECYKT 277
[Close]
BLAST of INO80 complex subunit B vs. TrEMBL
Match: E0VHV0 (Zinc finger protein HIT domain-containing protein, putative OS=Pediculus humanus subsp. corporis OX=121224 GN=8237500 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.644e-7
Identity = 58/201 (28.86%), Postives = 107/201 (53.23%), Query Frame = 2 
Query:  260 DAYSSGEEEKKSEIVLEGEDEWSDKECRYLAQMNDPRFMTARQRSLLDKRSGGR-ESNLEEMNFIDQIPALSNRSALRPTGKAGDHXXXXXXXXXXXXXXXXXKLLKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDLCPIWQPGKPVLPATVQCSADGCTNSKRYSCARTGRPLCYRIECYRS 859
            D+ +S EEE+  + +  G+ +  D+E + + +  DP+ MTARQR++L++++    E  L  +    +   ++  +  R   K+   ++   E+++++++ T+E+LLK      +   A+++       KS P I  V+SQ  E    V           +P +P  P  ++CS DGC N KRYSC++TG PLC  + CY++
Sbjct:   83 DSETSSEEERWLDAIQSGKLDEVDEELKKI-KPKDPKLMTARQRAMLERKTDKEPEEQLMSLPSGYKEVVMTAEAIQRKAIKSQKRKQMADEKREKDKKKTMERLLKKQDSKTIKSGAKKI-----TRKSTPQIVYVNSQT-ETKIIVPNGYDFPLTYSKPREP--PMRMKCSVDGCENDKRYSCSKTGFPLC-SLNCYKT 273
[Close]
BLAST of INO80 complex subunit B vs. TrEMBL
Match: A0A1S3D3W2 (INO80 complex subunit B OS=Diaphorina citri OX=121845 GN=LOC103510037 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 5.380e-7
Identity = 53/190 (27.89%), Postives = 99/190 (52.11%), Query Frame = 2 
Query:  359 NDPRFMTARQRSLLDKR-------------SGGRESNLEEMNFIDQIPALSNRSALRPTGKAGDHXXXXXXXXXXXXXXXXXKLLKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSY---VAFSDPDLCPIWQPGKPV------LPATVQCSADGCTNSKRYSCARTGRPLCYRIECYRSI 862
             DP+ MTARQR++L+++             SG RE  +         P ++ ++AL    K+   ++   E+++++++ T+E+LLK     + +K  + + + +   K  P+++++ +Q     S+   V F          P KP       +P+ VQC A  CTN+K+Y+C+RTG PLC  ++CY++I
Sbjct:   13 KDPKLMTARQRAMLERKTDNSSEQLLMSLPSGYREKVM--------TPEMAQKAAL----KSQKRKQQADEKREKDKQKTMERLLK----KQESKSGKIVMKKSTLKKQTPAVKLIRTQDSTLLSFPVDVEF----------PLKPSKIEDLSVPSPVQCGAAECTNTKKYACSRTGIPLC-SLQCYKTI 175
[Close]
BLAST of INO80 complex subunit B vs. TrEMBL
Match: A0A0C9S2D8 (PAPA-1 domain-containing protein (Fragment) OS=Amblyomma americanum OX=6943 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.661e-6
Identity = 57/190 (30.00%), Postives = 93/190 (48.95%), Query Frame = 2 
Query:  311 GEDEWSDKECRYLAQMNDPRFMTARQRSLLDKRS--GGRESNLEEMNFIDQIPALSNRSALRPTGKAGDHXXXXXXXXXXXXXXXXXKLLK-----VTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDLCPIWQPGKPVLPATVQCSADGCTNSKRYSCARTGRPLCYRIECYRS 859
            G  E  D E R   +M DP  MTARQR+LL+ +S     E +   +  ++    ++     R   +A   ++  +E+++++++ T+E+LLK     +  G +LAK+A   P+             VS  R E  + + F      P+   G    P    C   GCTN K+YSC++TG PLC  +ECY++
Sbjct:  123 GRLEEVDDELR---KMKDPTLMTARQRALLESKSLKDKEEDSPTPLQQVEPAKEMTEEMIQRRMQRAKKRKQQAEEKKEKDKKQTIERLLKKSDSRLRAGKKLAKKADAPPK-------------VSLVRSEAGTMLLFPTGVPFPLAPAGPREYPQRTLCGIKGCTNPKKYSCSKTGVPLCS-LECYKA 295
[Close]
BLAST of INO80 complex subunit B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009705.1 (pep scaffold:Pmarinus_7.0:GL478441:15729:30259:1 gene:ENSPMAG00000008770.1 transcript:ENSPMAT00000009705.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 47.3654 bits (111), Expect = 3.269e-6
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  764 VQCSADGCTNSKRYSCARTGRPLCYRIECYR 856
            + C   GCTN KRYSCA+TG PLC  +ECYR
Sbjct:  271 LDCGVPGCTNRKRYSCAKTGVPLCS-LECYR 300
[Close]
BLAST of INO80 complex subunit B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009703.1 (pep scaffold:Pmarinus_7.0:GL478441:15726:30262:1 gene:ENSPMAG00000008770.1 transcript:ENSPMAT00000009703.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.9802 bits (110), Expect = 3.700e-6
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  764 VQCSADGCTNSKRYSCARTGRPLCYRIECYR 856
            + C   GCTN KRYSCA+TG PLC  +ECYR
Sbjct:  279 LDCGVPGCTNRKRYSCAKTGVPLCS-LECYR 308
[Close]
BLAST of INO80 complex subunit B vs. Ensembl Sea Lamprey
Match: ENSPMAT00000009707.1 (pep scaffold:Pmarinus_7.0:GL478441:15738:30283:1 gene:ENSPMAG00000008770.1 transcript:ENSPMAT00000009707.1 gene_biotype:protein_coding transcript_biotype:protein_coding)

HSP 1 Score: 46.9802 bits (110), Expect = 4.122e-6
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 2 
Query:  764 VQCSADGCTNSKRYSCARTGRPLCYRIECYR 856
            + C   GCTN KRYSCA+TG PLC  +ECYR
Sbjct:  298 LDCGVPGCTNRKRYSCAKTGVPLCS-LECYR 327
[Close]
BLAST of INO80 complex subunit B vs. Planmine SMEST
Match: SMESG000037125.1 (SMESG000037125.1)

HSP 1 Score: 406.371 bits (1043), Expect = 2.010e-142
Identity = 232/234 (99.15%), Postives = 233/234 (99.57%), Query Frame = 2 
Query:  173 FRNEEMIVXXXXXXXXXXXXXXXGSVVKIDAYSSGEEEKKSEIVLEGEDEWSDKECRYLAQMNDPRFMTARQRSLLDKRSGGRESNLEEMNFIDQIPALSNRSALRPTGKAGDHXXXXXXXXXXXXXXXXXKLLKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDLCPIWQPGKPVLPATVQCSADGCTNSKRYSCARTGRPLCYRIECYRSIAGTN 874
            FRNEEMIVEFMLQEELEKYEEQEGSVVKIDAYSSGEEEKKSEIVLEGEDEWSDKECRYLAQMNDPRFMTARQRSLLDKRSGGRESNLEEMNFIDQIPALSNRSA+RPTGKAGDHRRAVKERQQEEQRVTVEKLLKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDLCPIWQPGKPVLPATVQCSADGCTNSKRYSCARTGRPLCYRIECYRSIA TN
Sbjct:   18 FRNEEMIVEFMLQEELEKYEEQEGSVVKIDAYSSGEEEKKSEIVLEGEDEWSDKECRYLAQMNDPRFMTARQRSLLDKRSGGRESNLEEMNFIDQIPALSNRSAMRPTGKAGDHRRAVKERQQEEQRVTVEKLLKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDLCPIWQPGKPVLPATVQCSADGCTNSKRYSCARTGRPLCYRIECYRSIADTN 251
The following BLAST results are available for this feature:
BLAST of INO80 complex subunit B vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 2
Match NameE-valueIdentityDescription
CG103959.095e-626.44gene:FBgn0033019 transcript:FBtr0347210[more]
CG103959.095e-626.44gene:FBgn0033019 transcript:FBtr0347209[more]
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BLAST of INO80 complex subunit B vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2R5LEP81.417e-832.60Putative ino80 complex subunit b OS=Ornithodoros t... [more]
A0A293LKQ12.495e-834.25PAPA-1 domain-containing protein (Fragment) OS=Orn... [more]
E0VHV01.644e-728.86Zinc finger protein HIT domain-containing protein,... [more]
A0A1S3D3W25.380e-727.89INO80 complex subunit B OS=Diaphorina citri OX=121... [more]
A0A0C9S2D82.661e-630.00PAPA-1 domain-containing protein (Fragment) OS=Amb... [more]
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BLAST of INO80 complex subunit B vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 3
Match NameE-valueIdentityDescription
ENSPMAT00000009705.13.269e-664.52pep scaffold:Pmarinus_7.0:GL478441:15729:30259:1 g... [more]
ENSPMAT00000009703.13.700e-664.52pep scaffold:Pmarinus_7.0:GL478441:15726:30262:1 g... [more]
ENSPMAT00000009707.14.122e-664.52pep scaffold:Pmarinus_7.0:GL478441:15738:30283:1 g... [more]
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BLAST of INO80 complex subunit B vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of INO80 complex subunit B vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000037125.12.010e-14299.15SMESG000037125.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028761 ID=SMED30028761|Name=INO80 complex subunit B|organism=Schmidtea mediterranea sexual|type=transcript|length=1248bp
AATTAATTTAAATCTATTTTTAATTCACTTATATTTTCATTATTATTAAT
TATTTATTTTTAATTTTAAGCTTTTATTGTAAATTTTTATATATTTTCAT
AACTAAATTCTTGTTGTCTCTATGATTAATAGTAATCTTAGCTCAGATGA
TGATACTTGCTCCACTTTGTCATTTAGAAACGAGGAAATGATTGTTGAAT
TTATGCTACAAGAAGAATTAGAGAAATATGAAGAACAGGAAGGATCAGTT
GTGAAAATCGACGCCTATTCTTCTGGTGAAGAGGAGAAGAAATCTGAAAT
AGTACTGGAAGGAGAAGACGAGTGGTCAGATAAAGAGTGCCGGTATTTAG
CCCAAATGAATGATCCTCGATTTATGACAGCTCGTCAGCGATCTCTGCTG
GACAAAAGGTCTGGTGGAAGAGAATCGAACTTAGAAGAAATGAATTTCAT
TGACCAGATTCCGGCATTATCGAATCGTTCTGCTCTGCGGCCAACAGGTA
AGGCTGGAGATCATCGGCGCGCTGTGAAAGAACGACAACAAGAGGAACAG
CGAGTCACTGTAGAGAAGCTATTAAAGGTTACCCCTGGTTCTCGTCTCGC
CAAGCGTGCCCGTCAGCTTCCCCAAGATAATGATAATTCCAAATCCGGCC
CGTCAATCCGTGTAGTCAGCAGCCAGCGGCCGGAATGCCCCAGCTATGTG
GCATTCTCTGATCCAGATCTCTGTCCAATCTGGCAGCCTGGCAAGCCGGT
GCTCCCTGCTACCGTTCAATGCTCGGCTGACGGATGCACCAATAGCAAGC
GCTACAGCTGTGCTCGTACCGGGAGGCCGCTCTGTTATCGGATCGAGTGC
TACCGATCGATTGCAGGCACTAACTAGCCATTGGCAGCCTCGGCTGCACG
TGTGCGCGTGTGTGTAAATATGTGCGTGTGTGATTGTGATTGTCGCGTTT
CCATTGGCTCGAGTGCATCTGATGCATTTTCTGGTAAACATTCTCCCGGT
TGGTTTTGCTTTTGGCGCTCTGATTTCCGCTGTGTTTCCGGGGAGGATTT
TACTGATATTTCTTTCAATACAATTAAAACCCGCATCTAAATCTTCTGCA
GTTGTTGTTAATGAAATTCTCGATAGTTCTGTGTAGAAATCGTGCACATC
TATTGCATCATTATAGCATTTGTATTGCATTTGTATTGCATCTGTATTGC
AGATCAGTAAAATCCTAGTTAGGATTGGTAAATAAATTTACATTCCGT
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protein sequence of SMED30028761-orf-1

>SMED30028761-orf-1 ID=SMED30028761-orf-1|Name=SMED30028761-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=252bp
MINSNLSSDDDTCSTLSFRNEEMIVEFMLQEELEKYEEQEGSVVKIDAYS
SGEEEKKSEIVLEGEDEWSDKECRYLAQMNDPRFMTARQRSLLDKRSGGR
ESNLEEMNFIDQIPALSNRSALRPTGKAGDHRRAVKERQQEEQRVTVEKL
LKVTPGSRLAKRARQLPQDNDNSKSGPSIRVVSSQRPECPSYVAFSDPDL
CPIWQPGKPVLPATVQCSADGCTNSKRYSCARTGRPLCYRIECYRSIAGT
N*
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protein sequence of SMED30028761-orf-2

>SMED30028761-orf-2 ID=SMED30028761-orf-2|Name=SMED30028761-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=176bp
MQYKCYNDAIDVHDFYTELSRISLTTTAEDLDAGFNCIERNISKILPGNT
AEIRAPKAKPTGRMFTRKCIRCTRANGNATITITHAHIYTHAHTCSRGCQ
WLVSACNRSVALDPITERPPGTSTAVALAIGASVSRALNGSREHRLARLP
DWTEIWIRECHIAGAFRPLAADYTD*
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000101muscle cell
PLANA:0002111X2 cell
Vocabulary: INTERPRO
TermDefinition
IPR029523INO80B/Ies2
Vocabulary: biological process
TermDefinition
GO:0006338chromatin remodeling
GO:0006355regulation of transcription, DNA-templated
Vocabulary: cellular component
TermDefinition
GO:0031011Ino80 complex
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..143
NoneNo IPR availablePANTHERPTHR21561:SF12HCG2039827, ISOFORM CRA_E-RELATEDcoord: 31..247
IPR029523INO80 complex, subunit Ies2PANTHERPTHR21561FAMILY NOT NAMEDcoord: 31..247