SMED30028740

Overview
NameSMED30028740
Smed IDSMED30028740
Length (bp)2568
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30028740 (SMED30028740) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30028740 (SMED30028740) in cells (dots) of each of the 12 neoblast clusters.

 

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Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30028740 (SMED30028740) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30028740 (SMED30028740) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

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Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30028740

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 5

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X2 cellSMED30028740SMESG000032664.1 SmedASXL_010395SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
X2 cellSMED30028740SMESG000032664.1 SmedASXL_017468SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
nervous systemSMED30028740SMESG000032664.1 dd_Smed_v4_5103_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30028740SMESG000032664.1 SMESG000032662.1 Contig4598newmark_estsPMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Smed sexual biotypeSMED30028740SMESG000032664.1 SMESG000032662.1 Contig4598uc_Smed_v2PMID:29674431
Fincher et al., 2018		FACS sorted cell population adult hermaphrodite single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30028740 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.000175:93060..105208 -12121
Homology
[Close]
BLAST of SMED30028740 vs. Planmine SMEST
Match: SMESG000032664.1 (SMESG000032664.1)

HSP 1 Score: 1335.09 bits (3454), Expect = 0.000e+0
Identity = 637/663 (96.08%), Postives = 654/663 (98.64%), Query Frame = 3 
Query:   57 MLITIINGENMDERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIYKNVILNEIKPLQFYQILNESEIWFGRIESYFKGDCAILNVFVTGRESDSIWLIAKRSRYDWEFRDALTRIYPNVKNIWVKSGQKYELPDIDKCINKAVDSGIISCDDPNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLTAYATHQGVPAILGATGLMEMLTDSAFGFIVEFSQRICDGCNKYWQNVKYRFNAETRQAFEQYFYIAVFAAVNDNMQSGELGIAGFSQSVEGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNSMLLDNYQAATGESDLLRSPFDEHWTKEPDATRNVAIFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKVPKAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHYIMDSSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKDSILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL 2045
            MLITIINGENM+ERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIY+NVILNEIKPLQFYQILNESEIWFGRIESYFKGDCA+LNVFVTGRESDSI LIA+RSRYDWEFRDALTRIYPNVKNIW+KSG+KYELPDID+CIN+AVDSGIISCD+PNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLT+YATHQGVPAILGA GLMEMLTDSAFGFIVEFSQRIC+ CN+YWQ+VKYRFNAETRQAFEQ+FYIAVF A+NDNMQSGELGIAGFSQSV GIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNSMLLD+YQAATGESDLLRSPFDE WTKEPDATRNVAIFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKV KAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVH+IMD SDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKD ILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL
Sbjct:    1 MLITIINGENMNERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIYENVILNEIKPLQFYQILNESEIWFGRIESYFKGDCALLNVFVTGRESDSILLIAERSRYDWEFRDALTRIYPNVKNIWIKSGRKYELPDIDECINEAVDSGIISCDNPNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLTSYATHQGVPAILGANGLMEMLTDSAFGFIVEFSQRICESCNEYWQHVKYRFNAETRQAFEQHFYIAVFTAINDNMQSGELGIAGFSQSVAGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNSMLLDSYQAATGESDLLRSPFDEDWTKEPDATRNVAIFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKVTKAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHFIMDRSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKDPILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL 663

HSP 2 Score: 311.227 bits (796), Expect = 1.984e-89
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 1 
Query: 2104 RVEIIHAIKPRGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDFINYAQFSLINERDEAGKQPIHYAIDRGNPE 2565
            RVEIIHAIK RGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDFINYAQFSLINERDE GK PIHYAIDRGNPE
Sbjct:  664 RVEIIHAIKARGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDFINYAQFSLINERDEDGKHPIHYAIDRGNPE 817

HSP 3 Score: 68.1662 bits (165), Expect = 2.372e-11
Identity = 75/322 (23.29%), Postives = 134/322 (41.61%), Query Frame = 3 
Query:  195 FKFIYKNVILN--EIKPLQFYQILNESEIWFGRIESYFKGDCAILNVFVTGRESDSIWLIAKRSRYDWEFRDALTRIYPNVKNIWVKSGQKY-ELPDIDKCINKAVDSGIISCDD-PNLTFNQVAGIHDRYWLDRYM-------IWDRTRLAARNEATMTQLSALVNKLTAYATHQGVP-AILGAT--GLMEMLTDSAFGFIVEFSQRICDGC-NKYW--QNVKYRFNAETRQAFEQYFYIAVFAAVNDNMQS-GELGIAGFSQSVEGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNS 1106
            F+ +Y+N+++N  E  P     + +E+E+W G  E   K +  I+ +F+ G     +  I  RS   ++ +  L  I      IW  +GQ    +P+I    +  +   +I CD   N +F +    H++Y ++ Y+       +W R          + Q   L  KL       GV   IL  T   +        F F    + RIC  C + YW  Q  K+  +    + F QYF  A+   +   +++ G+ G     +S+  +++  L YC  Y       DW++  R+++       L +  +   IN+W   +S
Sbjct:  427 FQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHFIMDRSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKL---LIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLI---LSNGVKDPILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDALRVEIIHAIKARGDRGNV-TEKSIRQMIIDTLEYCIDYLV-YPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHS 740
[Close]
BLAST of SMED30028740 vs. Planmine SMEST
Match: SMESG000032664.1 (SMESG000032664.1)

HSP 1 Score: 1333.55 bits (3450), Expect = 0.000e+0
Identity = 637/663 (96.08%), Postives = 654/663 (98.64%), Query Frame = 3 
Query:   57 MLITIINGENMDERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIYKNVILNEIKPLQFYQILNESEIWFGRIESYFKGDCAILNVFVTGRESDSIWLIAKRSRYDWEFRDALTRIYPNVKNIWVKSGQKYELPDIDKCINKAVDSGIISCDDPNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLTAYATHQGVPAILGATGLMEMLTDSAFGFIVEFSQRICDGCNKYWQNVKYRFNAETRQAFEQYFYIAVFAAVNDNMQSGELGIAGFSQSVEGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNSMLLDNYQAATGESDLLRSPFDEHWTKEPDATRNVAIFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKVPKAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHYIMDSSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKDSILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL 2045
            MLITIINGENM+ERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIY+NVILNEIKPLQFYQILNESEIWFGRIESYFKGDCA+LNVFVTGRESDSI LIA+RSRYDWEFRDALTRIYPNVKNIW+KSG+KYELPDID+CIN+AVDSGIISCD+PNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLT+YATHQGVPAILGA GLMEMLTDSAFGFIVEFSQRIC+ CN+YWQ+VKYRFNAETRQAFEQ+FYIAVF A+NDNMQSGELGIAGFSQSV GIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNSMLLD+YQAATGESDLLRSPFDE WTKEPDATRNVAIFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKV KAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVH+IMD SDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKD ILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL
Sbjct:    1 MLITIINGENMNERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIYENVILNEIKPLQFYQILNESEIWFGRIESYFKGDCALLNVFVTGRESDSILLIAERSRYDWEFRDALTRIYPNVKNIWIKSGRKYELPDIDECINEAVDSGIISCDNPNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLTSYATHQGVPAILGANGLMEMLTDSAFGFIVEFSQRICESCNEYWQHVKYRFNAETRQAFEQHFYIAVFTAINDNMQSGELGIAGFSQSVAGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNSMLLDSYQAATGESDLLRSPFDEDWTKEPDATRNVAIFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKVTKAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHFIMDRSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKDPILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL 663

HSP 2 Score: 311.227 bits (796), Expect = 1.165e-89
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 1 
Query: 2104 RVEIIHAIKPRGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDFINYAQFSLINERDEAGKQPIHYAIDRGNPE 2565
            RVEIIHAIK RGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDFINYAQFSLINERDE GK PIHYAIDRGNPE
Sbjct:  664 RVEIIHAIKARGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDFINYAQFSLINERDEDGKHPIHYAIDRGNPE 817

HSP 3 Score: 68.9366 bits (167), Expect = 1.622e-11
Identity = 75/322 (23.29%), Postives = 134/322 (41.61%), Query Frame = 3 
Query:  195 FKFIYKNVILN--EIKPLQFYQILNESEIWFGRIESYFKGDCAILNVFVTGRESDSIWLIAKRSRYDWEFRDALTRIYPNVKNIWVKSGQKY-ELPDIDKCINKAVDSGIISCDD-PNLTFNQVAGIHDRYWLDRYM-------IWDRTRLAARNEATMTQLSALVNKLTAYATHQGVP-AILGAT--GLMEMLTDSAFGFIVEFSQRICDGC-NKYW--QNVKYRFNAETRQAFEQYFYIAVFAAVNDNMQS-GELGIAGFSQSVEGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNS 1106
            F+ +Y+N+++N  E  P     + +E+E+W G  E   K +  I+ +F+ G     +  I  RS   ++ +  L  I      IW  +GQ    +P+I    +  +   +I CD   N +F +    H++Y ++ Y+       +W R          + Q   L  KL       GV   IL  T   +        F F    + RIC  C + YW  Q  K+  +    + F QYF  A+   +   +++ G+ G     +S+  +++  L YC  Y       DW++  R+++       L +  +   IN+W   +S
Sbjct:  427 FQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHFIMDRSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKL---LIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLI---LSNGVKDPILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDALRVEIIHAIKARGDRGNVT-EKSIRQMIIDTLEYCIDYLV-YPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHS 740
[Close]
BLAST of SMED30028740 vs. Planmine SMEST
Match: SMESG000032664.1 (SMESG000032664.1)

HSP 1 Score: 1332.78 bits (3448), Expect = 0.000e+0
Identity = 637/663 (96.08%), Postives = 654/663 (98.64%), Query Frame = 3 
Query:   57 MLITIINGENMDERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIYKNVILNEIKPLQFYQILNESEIWFGRIESYFKGDCAILNVFVTGRESDSIWLIAKRSRYDWEFRDALTRIYPNVKNIWVKSGQKYELPDIDKCINKAVDSGIISCDDPNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLTAYATHQGVPAILGATGLMEMLTDSAFGFIVEFSQRICDGCNKYWQNVKYRFNAETRQAFEQYFYIAVFAAVNDNMQSGELGIAGFSQSVEGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNSMLLDNYQAATGESDLLRSPFDEHWTKEPDATRNVAIFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKVPKAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHYIMDSSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKDSILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL 2045
            MLITIINGENM+ERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIY+NVILNEIKPLQFYQILNESEIWFGRIESYFKGDCA+LNVFVTGRESDSI LIA+RSRYDWEFRDALTRIYPNVKNIW+KSG+KYELPDID+CIN+AVDSGIISCD+PNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLT+YATHQGVPAILGA GLMEMLTDSAFGFIVEFSQRIC+ CN+YWQ+VKYRFNAETRQAFEQ+FYIAVF A+NDNMQSGELGIAGFSQSV GIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNSMLLD+YQAATGESDLLRSPFDE WTKEPDATRNVAIFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKV KAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVH+IMD SDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKD ILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL
Sbjct:    1 MLITIINGENMNERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIYENVILNEIKPLQFYQILNESEIWFGRIESYFKGDCALLNVFVTGRESDSILLIAERSRYDWEFRDALTRIYPNVKNIWIKSGRKYELPDIDECINEAVDSGIISCDNPNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLTSYATHQGVPAILGANGLMEMLTDSAFGFIVEFSQRICESCNEYWQHVKYRFNAETRQAFEQHFYIAVFTAINDNMQSGELGIAGFSQSVAGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNSMLLDSYQAATGESDLLRSPFDEDWTKEPDATRNVAIFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKVTKAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHFIMDRSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKDPILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL 663

HSP 2 Score: 310.842 bits (795), Expect = 1.867e-89
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 1 
Query: 2104 RVEIIHAIKPRGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDFINYAQFSLINERDEAGKQPIHYAIDRGNPE 2565
            RVEIIHAIK RGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDFINYAQFSLINERDE GK PIHYAIDRGNPE
Sbjct:  664 RVEIIHAIKARGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDFINYAQFSLINERDEDGKHPIHYAIDRGNPE 817

HSP 3 Score: 68.5514 bits (166), Expect = 1.884e-11
Identity = 75/322 (23.29%), Postives = 134/322 (41.61%), Query Frame = 3 
Query:  195 FKFIYKNVILN--EIKPLQFYQILNESEIWFGRIESYFKGDCAILNVFVTGRESDSIWLIAKRSRYDWEFRDALTRIYPNVKNIWVKSGQKY-ELPDIDKCINKAVDSGIISCDD-PNLTFNQVAGIHDRYWLDRYM-------IWDRTRLAARNEATMTQLSALVNKLTAYATHQGVP-AILGAT--GLMEMLTDSAFGFIVEFSQRICDGC-NKYW--QNVKYRFNAETRQAFEQYFYIAVFAAVNDNMQS-GELGIAGFSQSVEGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNS 1106
            F+ +Y+N+++N  E  P     + +E+E+W G  E   K +  I+ +F+ G     +  I  RS   ++ +  L  I      IW  +GQ    +P+I    +  +   +I CD   N +F +    H++Y ++ Y+       +W R          + Q   L  KL       GV   IL  T   +        F F    + RIC  C + YW  Q  K+  +    + F QYF  A+   +   +++ G+ G     +S+  +++  L YC  Y       DW++  R+++       L +  +   IN+W   +S
Sbjct:  427 FQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHFIMDRSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTDCKL---LIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLI---LSNGVKDPILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDALRVEIIHAIKARGDRGNVT-EKSIRQMIIDTLEYCIDYLV-YPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWREAHS 740
[Close]
BLAST of SMED30028740 vs. Planmine SMEST
Match: SMESG000032648.1 (SMESG000032648.1)

HSP 1 Score: 141.354 bits (355), Expect = 1.750e-45
Identity = 85/286 (29.72%), Postives = 157/286 (54.90%), Query Frame = 3 
Query: 1212 IFSADIKGKVIMEINESNSRDDLRYLIESAIESSHQKVPKAFQIVYRNIVINGD--EFLPRLCDMLDDEAELWIGDFEGLLKE--NDVIVELFLAGSVPSFVHYIMDSSDSIYKLKSMLADILHYPIRIWN-ANGQPIN---SMPEILATTDCKLLIQCDQLTNQSFTECCQCHNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKDSILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL 2045
            ++   + G++ ++I+E +  +++RY I       +      FQ++Y++I++N    EF        +D  ++WIG+ E  L++    VI+E+F+   + S  H I + ++ +  +KS +  +     RI+N A+   I+   ++ +I   ++ KL+I      + SF +C + H++YL+  Y+  NDLT++WYR +F       L++ L +AR +   +G  +  LD     +P +F++C F FC+ +TDRIC +C   YWK    +   D+IV+ VFRQ+F DAL
Sbjct:    5 VYGEVVNGELEIDIDEISDVENVRYDIGDLSGVFY------FQMIYKDIILNDKMREF------RFNDNPKIWIGNLENYLEKCPESVILEIFIVKEISSVAHIIANRTEQLNSVKSTIQCVTENISRIFNVASKSEIDCKQTVNDIEQNSEFKLIIS--TCEDSSFDDCIKGHDEYLIRNYISCNDLTFIWYRNDFKQYHIEALKEMLCVARTI---SGSPEPALDKNLDSLPQSFLNCRFFFCQAITDRICEICNYRYWKRNFHRRKYDEIVSSVFRQFFHDAL 273

HSP 2 Score: 62.3882 bits (150), Expect = 1.750e-45
Identity = 30/70 (42.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query: 2149 NVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGR-LNDSQIMPMINKWREAHSDITVGLN 2355
            +V EKS+R ++I  L++C +YL YP+++W+YL + FL +F   R +N+S+I  +I KW E HS I + L+
Sbjct:  290 HVGEKSMRDLVIQALDHCNNYLDYPNKEWRYLIQRFLSDFSFKRHINNSEIDGVIKKWIEDHSRIVIELS 359

HSP 3 Score: 91.6633 bits (226), Expect = 1.395e-19
Identity = 89/370 (24.05%), Postives = 171/370 (46.22%), Query Frame = 3 
Query:   66 TIINGENMDERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGN-HFKFIYKNVILNEIKPLQFYQILNESEIWFGRIESYFKG--DCAILNVFVTGRESDSIWLIAKRSRYDWEFRDALTRIYPNVKNIWVKSGQ-----KYELPDIDKCINKAVDSGIISCDDPNLTFNQVAGIHDRYWLDRYMIW-DRTRLAARNEATMTQLSALVNKLTAYATHQGVPAIL---GATGLMEMLTDSAFGFIVEFSQRICDGCN-KYWQNVKYR--FNAETRQAFEQYFYIA----VFAAVNDNMQSGELGIAGFSQSVEGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWT-GLTNGDLDEWINEWTANNSMLL 1115
             I+ GE ++  ++I++   S V+ VR   G       D +G  +F+ IYK++ILN+   ++ ++  +  +IW G +E+Y +   +  IL +F+    S    +IA R+      +  +  +  N+  I+  + +     K  + DI++  N      I +C+D   +F+     HD Y +  Y+   D T +  RN+     + AL   L    T  G P          L +   +  F F    + RIC+ CN +YW+   +R  ++      F Q+F+ A    V   +ND + +  L +    +S+  +V+ AL +C  Y +  N  +WR+  + ++S  S+   + N ++D  I +W  ++S ++
Sbjct:    3 AIVYGEVVNGELEIDIDEISDVENVRYDIG-------DLSGVFYFQMIYKDIILND--KMREFRFNDNPKIWIGNLENYLEKCPESVILEIFIVKEISSVAHIIANRTEQLNSVKSTIQCVTENISRIFNVASKSEIDCKQTVNDIEQ--NSEFKLIISTCEDS--SFDDCIKGHDEYLIRNYISCNDLTFIWYRNDFKQYHIEALKEMLCVARTISGSPEPALDKNLDSLPQSFLNCRFFFCQAITDRICEICNYRYWKRNFHRRKYDEIVSSVFRQFFHDALMNEVLEFINDRLHNP-LHVG--EKSMRDLVIQALDHCNNYLDYPNK-EWRYLIQRFLSDFSFKRHINNSEIDGVIKKWIEDHSRIV 355
[Close]
BLAST of SMED30028740 vs. Planmine SMEST
Match: SMESG000017211.1 (SMESG000017211.1)

HSP 1 Score: 126.716 bits (317), Expect = 1.011e-29
Identity = 90/355 (25.35%), Postives = 168/355 (47.32%), Query Frame = 3 
Query:   57 MLITIINGENMDERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFIYKNVILNEIKPLQFYQILNESEIWFGRIESYFKGDCAILNVFVTGRESDSIWLIAKRSRYDWEFRDALTRIYPNVKNIWVKSGQKYELPDIDKCINKAVDSG-----IISCD----DPNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSALVNKLTAYATHQGV--PAILGATG-LMEMLTDSAFGFIVEFSQRICDGCNKYWQNVKYRFNAETRQAFEQYFYIAVFAAVNDNMQSGELGIAGFSQSVEGIVMAALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWIN 1085
            M I IING     + +I +  +  V++++S    K          +++FI+ N+IL E   ++ Y+I    EIWFG+IE++ K D  I+ +F+ G    S+++I K      E R  L+RIYP + NIW   G+   L   D+ I  + + G     I  CD    + N +F +   +HDR W+++++IWD+ R    N++    L   ++K+    +      P +            ++ + F ++ + RI +    YW   +  ++    +    YF  A+  A+  ++ S    I    +S++ IV+ AL Y   Y   ++ N WR+W +L I + S    +  +++  ++
Sbjct:    1 MRIVIINGVEGGRKEEIYISQYMEVRDIKSNLDAKYGGQGVLVKYYYRFIHGNLILYENVCIKHYRIAANDEIWFGKIENFLKSDDVIVEIFLLGFIPTSVFMIMKTFDSISEIRSKLSRIYPMISNIWNARGR---LMRDDQMITDSDEEGHYKLIICYCDIESCEMNYSFEECCDLHDRSWVEQFLIWDQVRDENNNDSRRMMLIKRLDKVRLSISSNDFMDPRLRKPINEFPRSYINAKYLFGMDLTDRIWEIVMDYWTLARPEYDDSVNEFIVHYFRNAIELAILFHINSIPDQIDCTDKSIQSIVLKALEYIIAYLSSASKN-WRYWIKLLIKQNSLKQFSESEMERLLD 351

HSP 2 Score: 92.4337 bits (228), Expect = 6.847e-24
Identity = 83/283 (29.33%), Postives = 128/283 (45.23%), Query Frame = 3 
Query: 1245 MEINESNSRDDLRYLIESAIESSHQKVPKAFQIVYRNIVINGDEFLPRLCDMLDDEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHYIMDSSDSIYKLKSMLADILHYPIRIWNANGQPINSMPEILATTD----CKLLI-QCDQLT---NQSFTECCQCHNQYLVEYYL--------RNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKDSILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDIVARVFRQYFRDAL 2045
            ME+ +  S  D +Y  +  +   + +      I+Y N+ I                 E+W G  E  LK +DVIVE+FL G +P+ V  IM + DSI +++S L+ I      IWNA G+ +    +++  +D     KL+I  CD  +   N SF ECC  H++  VE +L         NND            S+   L + L   R  I SN   D  L     + P ++++  +LF   +TDRI  + +D YW     ++  DD V      YFR+A+
Sbjct:   23 MEVRDIKSNLDAKYGGQGVLVKYYYRFIHGNLILYENVCIKHYRIAA--------NDEIWFGKIENFLKSDDVIVEIFLLGFIPTSVFMIMKTFDSISEIRSKLSRIYPMISNIWNARGRLMRD-DQMITDSDEEGHYKLIICYCDIESCEMNYSFEECCDLHDRSWVEQFLIWDQVRDENNND------------SRRMMLIKRLDKVRLSISSNDFMDPRLRKPINEFPRSYINAKYLFGMDLTDRIWEIVMD-YWTLARPEY--DDSVNEFIVHYFRNAI 281

HSP 3 Score: 38.5058 bits (88), Expect = 6.847e-24
Identity = 17/64 (26.56%), Postives = 39/64 (60.94%), Query Frame = 1 
Query: 2107 VEIIHAIKPRGDRGNVTEKSIRQMIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQI 2298
            + I+  I    D+ + T+KSI+ +++  LEY I YL   S++W+Y  ++ + +  + + ++S++
Sbjct:  283 LAILFHINSIPDQIDCTDKSIQSIVLKALEYIIAYLSSASKNWRYWIKLLIKQNSLKQFSESEM 346
The following BLAST results are available for this feature:
BLAST of SMED30028740 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028740 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000032664.11.984e-8996.08SMESG000032664.1[more]
SMESG000032664.11.165e-8996.08SMESG000032664.1[more]
SMESG000032664.11.867e-8996.08SMESG000032664.1[more]
SMESG000032648.11.750e-4529.72SMESG000032648.1[more]
SMESG000017211.11.011e-2925.35SMESG000017211.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028740 ID=SMED30028740|Name=SMED30028740|organism=Schmidtea mediterranea sexual|type=transcript|length=2568bp
ATTAAATCAATTCTATTGACAAATAAGTTGTAATAATCGGTAATAATTAT
AATATAATGCTAATCACAATAATCAACGGGGAAAACATGGATGAGCGGAT
CCAGATTGAGGTGGGAATATTCTCGATTGTCCAGGAAGTCAGGAGTGCAT
TTGGTGAGAAATCGCAGCGCAACAGAGATTTTACCGGCAATCATTTCAAA
TTCATTTATAAAAATGTGATTCTCAATGAGATAAAACCTTTACAATTCTA
TCAGATTCTCAATGAGAGCGAGATTTGGTTCGGCAGAATTGAGAGCTATT
TCAAGGGGGATTGTGCCATTTTGAATGTGTTTGTGACCGGGCGGGAATCT
GACTCGATTTGGTTGATTGCTAAACGCTCTAGATATGACTGGGAATTCAG
GGACGCTTTGACCAGGATTTATCCCAACGTTAAGAATATTTGGGTCAAAA
GCGGCCAGAAATATGAACTGCCTGATATTGATAAATGCATTAATAAGGCA
GTTGACAGCGGAATTATCAGCTGTGACGATCCCAATTTGACATTCAATCA
AGTAGCCGGCATTCATGATCGCTATTGGCTGGATCGATATATGATCTGGG
ACAGAACTCGTCTAGCAGCCAGAAATGAAGCCACCATGACCCAATTGAGC
GCCCTTGTCAATAAATTGACTGCCTATGCTACTCATCAGGGAGTTCCAGC
CATTCTAGGGGCTACTGGGTTGATGGAAATGTTGACAGATTCGGCATTTG
GATTCATTGTTGAATTCTCCCAGCGGATTTGCGACGGTTGCAATAAATAT
TGGCAGAATGTCAAATACCGATTCAATGCTGAAACTAGGCAGGCATTTGA
GCAGTATTTCTATATCGCAGTATTTGCGGCTGTCAATGACAATATGCAAT
CTGGAGAATTGGGTATCGCAGGTTTCAGTCAATCAGTTGAGGGAATTGTG
ATGGCTGCATTGGGCTATTGTGGGAGATATTGCGAGGACTCGAATGGCAA
TGATTGGCGGTTTTGGGCTAGATTGTGGATAAGCCGGATGTCGTGGACAG
GACTGACCAATGGGGATCTGGACGAATGGATTAATGAATGGACTGCCAAT
AACTCAATGCTATTGGATAACTATCAGGCAGCAACAGGTGAATCGGACCT
CTTGCGCTCACCATTTGATGAGCACTGGACGAAAGAACCCGATGCGACGC
GGAATGTTGCAATATTCAGTGCAGATATTAAAGGAAAAGTTATAATGGAA
ATCAACGAGTCCAATAGCAGAGACGACCTCAGATATTTGATTGAGAGTGC
CATTGAATCCAGCCATCAAAAGGTGCCGAAAGCATTTCAAATCGTCTACA
GAAACATAGTTATAAATGGTGATGAATTCTTGCCAAGGCTTTGTGACATG
CTTGATGACGAGGCCGAGCTTTGGATCGGGGATTTCGAAGGGTTATTGAA
GGAGAATGACGTCATTGTGGAGCTGTTTCTCGCTGGCTCTGTGCCTTCCT
TCGTGCATTACATCATGGACAGCTCAGATTCAATTTACAAGCTCAAATCC
ATGCTGGCTGACATTTTGCATTATCCAATCAGAATCTGGAATGCAAATGG
TCAACCGATCAATTCAATGCCAGAAATATTGGCTACGACTGATTGCAAAT
TGCTCATTCAATGCGACCAATTGACCAATCAGTCATTCACAGAATGCTGC
CAGTGCCACAATCAATATCTGGTGGAATATTATCTGAGAAATAATGATTT
GACATATATGTGGTACCGACGGGAATTTGGCCATTCACAGACCAATCAGT
TGAGGCAGGCTTTATATTTGGCAAGGAAACTAATCCTGTCCAATGGCGTG
AAGGATTCCATATTGGATTATACATTTCCCCAGATGCCAGCCGCATTTGT
GAGTTGCGGCTTCCTGTTCTGTGAGATCATGACTGATCGGATCTGCTCGG
TTTGTATCGATTCTTACTGGAAATCACAGATGGGGAAATGGCTAAATGAT
GACATCGTTGCGCGCGTGTTCCGTCAATATTTCCGTGACGCGTTGTAAAC
TAATTTGAATGATAAAATATTGCGTTTCTATCGCTATTTCTCATTGATCT
AGGCGGGTGGAAATCATCCATGCAATCAAGCCGAGAGGGGACCGGGGCAA
TGTCACAGAGAAATCAATAAGGCAGATGATAATCGATACATTGGAGTATT
GCATTGATTATCTGGTCTACCCGAGTAGAGATTGGCAATATTTGACTCGA
ATATTCCTTGATGAATTCTTGATCGGACGTTTGAATGATTCCCAAATAAT
GCCGATGATCAATAAATGGAGGGAGGCCCACTCGGATATAACGGTAGGAC
TGAATGAGGAGAACCGGACGGGGACAAAATCCGGAGCCAGGAGGGATCAA
CTAAATAGAATGAGAAAGTCCAGCCAATTAAAATTGCTGGTTGACATCAG
CCAATCGGAATCAACGGAGGATTTTATCAATTACGCACAGTTCTCTCTAA
TAAATGAGCGTGATGAGGCTGGCAAGCAGCCCATTCATTATGCAATCGAT
CGAGGCAATCCAGAAATG
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protein sequence of SMED30028740-orf-1

>SMED30028740-orf-1 ID=SMED30028740-orf-1|Name=SMED30028740-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=664bp
MLITIINGENMDERIQIEVGIFSIVQEVRSAFGEKSQRNRDFTGNHFKFI
YKNVILNEIKPLQFYQILNESEIWFGRIESYFKGDCAILNVFVTGRESDS
IWLIAKRSRYDWEFRDALTRIYPNVKNIWVKSGQKYELPDIDKCINKAVD
SGIISCDDPNLTFNQVAGIHDRYWLDRYMIWDRTRLAARNEATMTQLSAL
VNKLTAYATHQGVPAILGATGLMEMLTDSAFGFIVEFSQRICDGCNKYWQ
NVKYRFNAETRQAFEQYFYIAVFAAVNDNMQSGELGIAGFSQSVEGIVMA
ALGYCGRYCEDSNGNDWRFWARLWISRMSWTGLTNGDLDEWINEWTANNS
MLLDNYQAATGESDLLRSPFDEHWTKEPDATRNVAIFSADIKGKVIMEIN
ESNSRDDLRYLIESAIESSHQKVPKAFQIVYRNIVINGDEFLPRLCDMLD
DEAELWIGDFEGLLKENDVIVELFLAGSVPSFVHYIMDSSDSIYKLKSML
ADILHYPIRIWNANGQPINSMPEILATTDCKLLIQCDQLTNQSFTECCQC
HNQYLVEYYLRNNDLTYMWYRREFGHSQTNQLRQALYLARKLILSNGVKD
SILDYTFPQMPAAFVSCGFLFCEIMTDRICSVCIDSYWKSQMGKWLNDDI
VARVFRQYFRDAL*
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protein sequence of SMED30028740-orf-2

>SMED30028740-orf-2 ID=SMED30028740-orf-2|Name=SMED30028740-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=131bp
MIIDTLEYCIDYLVYPSRDWQYLTRIFLDEFLIGRLNDSQIMPMINKWRE
AHSDITVGLNEENRTGTKSGARRDQLNRMRKSSQLKLLVDISQSESTEDF
INYAQFSLINERDEAGKQPIHYAIDRGNPEM
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000099neuron
PLANA:0002111X2 cell