SMED30028734

Overview
NameSMED30028734
Smed IDSMED30028734
Length (bp)420
Neoblast Clusters

Zeng et. al., 2018



 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
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Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

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Anatomical Expression

PAGE et. al., 2020



SMED30028734

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 7

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
pharynxSMED30028734SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
nervous systemSMED30028734SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30028734SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
cephalic gangliaSMED30028734SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
neuronSMED30028734SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		whole organism asexual adult colorimetric in situ hybridization evidence
parenchymal cellSMED30028734SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
epidermisSMED30028734SMESG000038532.1 SMESG000038520.1 SMESG000038497.1 SMESG000036112.1 SMESG000036067.1 dd_Smed_v4_5097_0_1dd_Smed_v4PMID:28292427
Wurtzel et al., 2017		whole organism asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Alignments
SMED30028734 aligns in the following genomic locations:
Alignment LocationAlignment Score
v31.002942:2720..3139 -2100
v31.005383:51831..52256 +1951
v31.028588:4001..4421 +1497
v31.012180:7376..7801 -1484
Homology
[Close]
BLAST of SMED30028734 vs. Planmine SMEST
Match: SMESG000036067.1 (SMESG000036067.1)

HSP 1 Score: 242.276 bits (617), Expect = 3.321e-76
Identity = 129/142 (90.85%), Postives = 136/142 (95.77%), Query Frame = 1 
Query:    1 LLSEKDNLKFLIKEMDDKNKILQNNYNKSEEEN--LKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF 420
            LLSE+DNLKFL+KE+DDKNKILQNNYNKSEEEN  LKFQRDKYLAEINKLES+LKESY TNRRLHKDCDDCKAELQRSEERNSQLENEIEV NRKNKEIAKYFQMQIKDSN SNERLKLELKQSENKF+SLQN+NNNI+S F
Sbjct:  428 LLSERDNLKFLVKEIDDKNKILQNNYNKSEEENENLKFQRDKYLAEINKLESVLKESYTTNRRLHKDCDDCKAELQRSEERNSQLENEIEVNNRKNKEIAKYFQMQIKDSNYSNERLKLELKQSENKFQSLQNDNNNIESRF 569

HSP 2 Score: 95.1301 bits (235), Expect = 1.607e-23
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:   22 LKFLIKEMDDKNKILQNNYNKSEEENLKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF 420
            LK  +K+ ++K + LQN+ N  E         ++  +I +L+S LKES      L +D +DCK +L+ S+ERN QLENE+ V  R  +EI + FQ++++DSN SNE++ LEL +SE KFKSLQ ENNNIKSGF
Sbjct:  544 LKLELKQSENKFQSLQNDNNNIE--------SRFAEQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLENELVVNKRTIEEITEDFQLKMEDSNSSNEKMLLELNRSEYKFKSLQIENNNIKSGF 668

HSP 3 Score: 56.6102 bits (135), Expect = 4.943e-10
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 1 
Query:   31 LIKEMDDKNKILQNNYNKSEEENLKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLE---------------------NEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKS 414
            LIK++  +N   +  Y K + EN     ++YLA+I +L+S  +ES  TN+RL  + D  K +L+RS+ERN +LE                     N+++    K   IAK  + Q+ + N S + LK +L +  NK K LQ+EN++IKS
Sbjct:  188 LIKQLQKENSQFEGKYKKLQNEN-----NQYLAQIERLKSGFRESERTNKRLQLNIDQYKTKLERSQERNLKLESANRLKSQMERNRCVNCAELINQLQNEKGKTNRIAKDCEFQLDNLNRSVKNLKSQLNKMGNKCKDLQDENDHIKS 331
[Close]
BLAST of SMED30028734 vs. Planmine SMEST
Match: SMESG000036067.1 (SMESG000036067.1)

HSP 1 Score: 241.891 bits (616), Expect = 4.077e-76
Identity = 129/142 (90.85%), Postives = 136/142 (95.77%), Query Frame = 1 
Query:    1 LLSEKDNLKFLIKEMDDKNKILQNNYNKSEEEN--LKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF 420
            LLSE+DNLKFL+KE+DDKNKILQNNYNKSEEEN  LKFQRDKYLAEINKLES+LKESY TNRRLHKDCDDCKAELQRSEERNSQLENEIEV NRKNKEIAKYFQMQIKDSN SNERLKLELKQSENKF+SLQN+NNNI+S F
Sbjct:  423 LLSERDNLKFLVKEIDDKNKILQNNYNKSEEENENLKFQRDKYLAEINKLESVLKESYTTNRRLHKDCDDCKAELQRSEERNSQLENEIEVNNRKNKEIAKYFQMQIKDSNYSNERLKLELKQSENKFQSLQNDNNNIESRF 564

HSP 2 Score: 95.1301 bits (235), Expect = 1.876e-23
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:   22 LKFLIKEMDDKNKILQNNYNKSEEENLKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF 420
            LK  +K+ ++K + LQN+ N  E         ++  +I +L+S LKES      L +D +DCK +L+ S+ERN QLENE+ V  R  +EI + FQ++++DSN SNE++ LEL +SE KFKSLQ ENNNIKSGF
Sbjct:  539 LKLELKQSENKFQSLQNDNNNIE--------SRFAEQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLENELVVNKRTIEEITEDFQLKMEDSNSSNEKMLLELNRSEYKFKSLQIENNNIKSGF 663

HSP 3 Score: 56.225 bits (134), Expect = 5.820e-10
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 1 
Query:   31 LIKEMDDKNKILQNNYNKSEEENLKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLE---------------------NEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKS 414
            LIK++  +N   +  Y K + EN     ++YLA+I +L+S  +ES  TN+RL  + D  K +L+RS+ERN +LE                     N+++    K   IAK  + Q+ + N S + LK +L +  NK K LQ+EN++IKS
Sbjct:  183 LIKQLQKENSQFEGKYKKLQNEN-----NQYLAQIERLKSGFRESERTNKRLQLNIDQYKTKLERSQERNLKLESANRLKSQMERNRCVNCAELINQLQNEKGKTNRIAKDCEFQLDNLNRSVKNLKSQLNKMGNKCKDLQDENDHIKS 326
[Close]
BLAST of SMED30028734 vs. Planmine SMEST
Match: SMESG000036067.1 (SMESG000036067.1)

HSP 1 Score: 241.506 bits (615), Expect = 1.223e-75
Identity = 129/142 (90.85%), Postives = 136/142 (95.77%), Query Frame = 1 
Query:    1 LLSEKDNLKFLIKEMDDKNKILQNNYNKSEEEN--LKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF 420
            LLSE+DNLKFL+KE+DDKNKILQNNYNKSEEEN  LKFQRDKYLAEINKLES+LKESY TNRRLHKDCDDCKAELQRSEERNSQLENEIEV NRKNKEIAKYFQMQIKDSN SNERLKLELKQSENKF+SLQN+NNNI+S F
Sbjct:  423 LLSERDNLKFLVKEIDDKNKILQNNYNKSEEENENLKFQRDKYLAEINKLESVLKESYTTNRRLHKDCDDCKAELQRSEERNSQLENEIEVNNRKNKEIAKYFQMQIKDSNYSNERLKLELKQSENKFQSLQNDNNNIESRF 564

HSP 2 Score: 94.7449 bits (234), Expect = 2.161e-23
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:   22 LKFLIKEMDDKNKILQNNYNKSEEENLKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF 420
            LK  +K+ ++K + LQN+ N  E         ++  +I +L+S LKES      L +D +DCK +L+ S+ERN QLENE+ V  R  +EI + FQ++++DSN SNE++ LEL +SE KFKSLQ ENNNIKSGF
Sbjct:  539 LKLELKQSENKFQSLQNDNNNIE--------SRFAEQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLENELVVNKRTIEEITEDFQLKMEDSNSSNEKMLLELNRSEYKFKSLQIENNNIKSGF 663

HSP 3 Score: 56.6102 bits (135), Expect = 4.874e-10
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 1 
Query:   31 LIKEMDDKNKILQNNYNKSEEENLKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLE---------------------NEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKS 414
            LIK++  +N   +  Y K + EN     ++YLA+I +L+S  +ES  TN+RL  + D  K +L+RS+ERN +LE                     N+++    K   IAK  + Q+ + N S + LK +L +  NK K LQ+EN++IKS
Sbjct:  183 LIKQLQKENSQFEGKYKKLQNEN-----NQYLAQIERLKSGFRESERTNKRLQLNIDQYKTKLERSQERNLKLESANRLKSQMERNRCVNCAELINQLQNEKGKTNRIAKDCEFQLDNLNRSVKNLKSQLNKMGNKCKDLQDENDHIKS 326
[Close]
BLAST of SMED30028734 vs. Planmine SMEST
Match: SMESG000036067.1 (SMESG000036067.1)

HSP 1 Score: 241.506 bits (615), Expect = 1.389e-75
Identity = 129/142 (90.85%), Postives = 136/142 (95.77%), Query Frame = 1 
Query:    1 LLSEKDNLKFLIKEMDDKNKILQNNYNKSEEEN--LKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF 420
            LLSE+DNLKFL+KE+DDKNKILQNNYNKSEEEN  LKFQRDKYLAEINKLES+LKESY TNRRLHKDCDDCKAELQRSEERNSQLENEIEV NRKNKEIAKYFQMQIKDSN SNERLKLELKQSENKF+SLQN+NNNI+S F
Sbjct:  428 LLSERDNLKFLVKEIDDKNKILQNNYNKSEEENENLKFQRDKYLAEINKLESVLKESYTTNRRLHKDCDDCKAELQRSEERNSQLENEIEVNNRKNKEIAKYFQMQIKDSNYSNERLKLELKQSENKFQSLQNDNNNIESRF 569

HSP 2 Score: 94.7449 bits (234), Expect = 2.336e-23
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:   22 LKFLIKEMDDKNKILQNNYNKSEEENLKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF 420
            LK  +K+ ++K + LQN+ N  E         ++  +I +L+S LKES      L +D +DCK +L+ S+ERN QLENE+ V  R  +EI + FQ++++DSN SNE++ LEL +SE KFKSLQ ENNNIKSGF
Sbjct:  544 LKLELKQSENKFQSLQNDNNNIE--------SRFAEQIEQLQSALKESDRKMGSLQRDFEDCKEKLKHSQERNLQLENELVVNKRTIEEITEDFQLKMEDSNSSNEKMLLELNRSEYKFKSLQIENNNIKSGF 668

HSP 3 Score: 56.6102 bits (135), Expect = 5.167e-10
Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 1 
Query:   31 LIKEMDDKNKILQNNYNKSEEENLKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLE---------------------NEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKS 414
            LIK++  +N   +  Y K + EN     ++YLA+I +L+S  +ES  TN+RL  + D  K +L+RS+ERN +LE                     N+++    K   IAK  + Q+ + N S + LK +L +  NK K LQ+EN++IKS
Sbjct:  188 LIKQLQKENSQFEGKYKKLQNEN-----NQYLAQIERLKSGFRESERTNKRLQLNIDQYKTKLERSQERNLKLESANRLKSQMERNRCVNCAELINQLQNEKGKTNRIAKDCEFQLDNLNRSVKNLKSQLNKMGNKCKDLQDENDHIKS 331
[Close]
BLAST of SMED30028734 vs. Planmine SMEST
Match: SMESG000047799.1 (SMESG000047799.1)

HSP 1 Score: 176.407 bits (446), Expect = 1.184e-52
Identity = 94/121 (77.69%), Postives = 108/121 (89.26%), Query Frame = 1 
Query:    1 LLSEKDNLKFLIKEMDDKNKILQNNYNKSEEEN--LKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQIKDSNCSNERLKLEL 357
            LLSE+DNLKFL+KE+DDKNKILQNNYNKS EEN  LK QRDKYLAEINKLES+LKESY TNRRLHKDCDDCKAELQRSEERNSQ +NEI+V  RK +EI K +Q+++++SN S E+LKLEL
Sbjct:  381 LLSERDNLKFLVKEIDDKNKILQNNYNKSGEENENLKIQRDKYLAEINKLESVLKESYTTNRRLHKDCDDCKAELQRSEERNSQFKNEIDVNKRKIEEITKDYQLKMENSNNSIEKLKLEL 501

HSP 2 Score: 83.5741 bits (205), Expect = 2.100e-19
Identity = 58/132 (43.94%), Postives = 81/132 (61.36%), Query Frame = 1 
Query:   82 KSEEENLKFQRDKYLAEINKLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEI-------------------EVYNRKNKEIAKYFQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF 420
            K++ E  K +  + + +IN+LES LKE    N RL +D DDCK +L +S+ RNSQLE+EI                   +   RK +EI+K FQ+++ +S  SNE+LKLEL Q +NK KSLQN+N+N KS F
Sbjct:  201 KTQLEKKKTRVKRQIEKINQLESELKELEGINLRLQQDFDDCKVKLNQSQRRNSQLESEINKKQCENCAELIKQLQKQKDTSKRKTEEISKDFQLKMDNSKTSNEKLKLELNQLKNKCKSLQNQNDNDKSQF 332

HSP 3 Score: 67.0106 bits (162), Expect = 1.333e-13
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:  139 KLESLLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKYFQMQI 315
            +LES LKES     +LHKD DDCKAELQRS ERN QLENE+E+  RK +EI K FQ+++
Sbjct:  593 QLESELKESDKIKNKLHKDYDDCKAELQRSAERNLQLENEMEINKRKIEEIKKDFQLKL 651
The following BLAST results are available for this feature:
BLAST of SMED30028734 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of SMED30028734 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000036067.13.321e-7690.85SMESG000036067.1[more]
SMESG000036067.14.077e-7690.85SMESG000036067.1[more]
SMESG000036067.11.223e-7590.85SMESG000036067.1[more]
SMESG000036067.11.389e-7590.85SMESG000036067.1[more]
SMESG000047799.11.184e-5277.69SMESG000047799.1[more]
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Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028734 ID=SMED30028734|Name=SMED30028734|organism=Schmidtea mediterranea sexual|type=transcript|length=420bp
TTGCTGTCAGAAAAGGATAATTTGAAATTTCTAATAAAAGAAATGGATGA
TAAAAATAAAATTCTGCAAAATAATTATAATAAATCAGAAGAAGAAAATT
TAAAATTTCAACGTGATAAATATTTGGCAGAGATTAATAAATTGGAATCA
TTGTTGAAGGAATCATACGCGACAAATAGGAGATTACATAAGGATTGTGA
CGATTGCAAAGCGGAATTGCAACGTTCAGAGGAGAGAAATTCACAATTGG
AAAATGAAATTGAGGTATATAATAGAAAAAATAAAGAAATTGCAAAATAT
TTCCAAATGCAAATAAAGGATTCAAACTGCTCTAATGAGAGACTGAAATT
GGAATTAAAACAATCGGAAAACAAATTTAAAAGCTTGCAGAATGAAAATA
ACAATATCAAATCCGGATTT
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protein sequence of SMED30028734-orf-1

>SMED30028734-orf-1 ID=SMED30028734-orf-1|Name=SMED30028734-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=140bp
LLSEKDNLKFLIKEMDDKNKILQNNYNKSEEENLKFQRDKYLAEINKLES
LLKESYATNRRLHKDCDDCKAELQRSEERNSQLENEIEVYNRKNKEIAKY
FQMQIKDSNCSNERLKLELKQSENKFKSLQNENNNIKSGF
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Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0000016pharynx
PLANA:0000034epidermis
PLANA:0000099neuron
PLANA:0002032epidermal cell
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 114..134
NoneNo IPR availableCOILSCoilCoilcoord: 12..53
NoneNo IPR availableCOILSCoilCoilcoord: 61..95