Elongator complex protein 2 (inferred by orthology to a human protein)

Overview
NameElongator complex protein 2 (inferred by orthology to a human protein)
Smed IDSMED30028703
Length (bp)3972
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of Elongator complex protein 2 (inferred by orthology to a human protein) (SMED30028703) t-SNE clustered cells

Violin plots show distribution of expression levels for Elongator complex protein 2 (inferred by orthology to a human protein) (SMED30028703) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of Elongator complex protein 2 (inferred by orthology to a human protein) (SMED30028703) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for Elongator complex protein 2 (inferred by orthology to a human protein) (SMED30028703) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30028703

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
X1 cellSMED30028703SMESG000022611.1 SmedASXL_001824SmedAsxl_ww_GCZZ01PMID:26114597
Zhu et al., 2015		FACS sorted cell population asexual adult RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Fly
Match: Elp2 (gene:FBgn0033540 transcript:FBtr0088212)

HSP 1 Score: 50.8322 bits (120), Expect = 9.753e-6
Identity = 50/157 (31.85%), Postives = 71/157 (45.22%), Query Frame = 3 
Query: 1437 QD*SFGYSV--RLHRNNPVFNVYIADIDDFH--RCFVTVSRDKRMIIWDSD--------NCARVGEPLTLK-ESINAIATMPILL---ENLYVFAIGLENGEIKIVQFDLSTNSWTTLLSF---VAHFDWITRLRFNPVPNENKFLLASCSKDRFVK 1850
            QD S  Y +     ++N V    I   D  H  + FVT SRD ++++W  +        N  +    L LK ESI A+A     L   ++ Y+ A+G E G IKI QF     +W  L       AH   + RL+F P     +  LASC +D  V+
Sbjct:  636 QDSSVSYQLVASTDKSNGVHTRIIWSCDWSHDGQFFVTSSRDGKVVVWKKEEDCKESSLNGWQANGVLELKNESITAVAFSNSYLSGTDDTYILALGTETGLIKIYQF--VRGAWKLLSDLNKSQAHHLTVRRLQFRP---GKQLQLASCGEDHLVR 787
[Close]
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. TrEMBL
Match: R7TWN9 (Uncharacterized protein OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_179061 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.138e-8
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 3 
Query: 1530 FVTVSRDKRMIIWDSDNC-----ARVGEPLTLKESINAIATMPILLENLYVFAIGLENGEIKIVQFDLSTNSWT---TLLSFVAHFDWITRLRFNPVPNENKFLLASCSKDRFVK 1850
            FVTVSRDK+ ++W             G PL L +S+ A+   P +  + Y+ A GL+NG I I ++  +  +W+    L    AH   + +++F P    N+ LLASCS D  VK
Sbjct:  673 FVTVSRDKKAVVWQQQPLNDELFVSAGSPLKLPDSVTAVDFAPDMHNDFYILAFGLDNGHIMIYKW--ADQAWSLHFHLKQSEAHHLTVKQVKFQPTAAGNELLLASCSDDHSVK 785
[Close]
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. TrEMBL
Match: A0A3P6NT87 (WD_REPEATS_REGION domain-containing protein OS=Anisakis simplex OX=6269 GN=ASIM_LOCUS1744 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.147e-8
Identity = 51/136 (37.50%), Postives = 69/136 (50.74%), Query Frame = 3 
Query: 1524 RCFVTVSRDKRMIIW------DSDNCARVGEPLTLK--ESINAIATMPILLENLYVFAIGLENGEIKIVQFDLSTNSWT--TLLSFV----AHFDWITRLRFNPVP-------------NENKFLLASCSKDRFVK 1850
            R F T +RDK++ +W      + +    V   L  K  ES+ AIA  P LL   YV AIGLENG+I++V ++ S  + T  +LL+ +    AH   I RLRF P P             NEN + LAS + D  VK
Sbjct:   25 RYFATGARDKKVALWSVAANDNEEKSTHVQIALQSKRSESVTAIAFCPCLLNQSYVLAIGLENGQIELVAWNPSIGTATDLSLLASLDGCRAHSQTIARLRFRPKPGKWMSVCESEKSTNENIYELASVANDNAVK 160
[Close]
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. TrEMBL
Match: A0A0M3J2W2 (Elongator complex protein 2 (inferred by orthology to a human protein) OS=Anisakis simplex OX=6269 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.239e-8
Identity = 51/136 (37.50%), Postives = 69/136 (50.74%), Query Frame = 3 
Query: 1524 RCFVTVSRDKRMIIW------DSDNCARVGEPLTLK--ESINAIATMPILLENLYVFAIGLENGEIKIVQFDLSTNSWT--TLLSFV----AHFDWITRLRFNPVP-------------NENKFLLASCSKDRFVK 1850
            R F T +RDK++ +W      + +    V   L  K  ES+ AIA  P LL   YV AIGLENG+I++V ++ S  + T  +LL+ +    AH   I RLRF P P             NEN + LAS + D  VK
Sbjct:   25 RYFATGARDKKVALWSVAANDNEEKSTHVQIALQSKRSESVTAIAFCPCLLNQSYVLAIGLENGQIELVAWNPSIGTATDLSLLASLDGCRAHSQTIARLRFRPKPGKWMSVCESEKSTNENIYELASVANDNAVK 160
[Close]
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. TrEMBL
Match: H2Y854 (WD_REPEATS_REGION domain-containing protein OS=Ciona savignyi OX=51511 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 8.172e-7
Identity = 41/116 (35.34%), Postives = 67/116 (57.76%), Query Frame = 3 
Query: 1530 FVTVSRDKRMIIWDSDN------CARVGEPLTLKESINAIATMPILLENLYVFAIGLENGEIKIVQFDLSTNSWTTLLSF---VAHFDWITRLRFNPVPNENKFLLASCSKDRFVK 1850
            F+T SRDK+++IW ++       CA +      KE++ A+A  P +L N Y+ A GLE+G IK+ +F  S + +  +  F   ++H   + RL++NP+   +K  LASC+ D  VK
Sbjct:  639 FITASRDKKIMIWKNETNSVDKVCAEI-----CKEAVTAVAFSPQILSNKYIIAYGLESGIIKLAEF--SNSEFQNIFQFNINMSHCLAVKRLKWNPL--NSKLTLASCALDNQVK 745
[Close]
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. TrEMBL
Match: A0A4Y2H3G9 (Elongator complex protein 2 OS=Araneus ventricosus OX=182803 GN=elp2_0 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.128e-6
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = 3 
Query: 1512 DDFHRCFVTVSRDKRMIIW-----DSDNCARVGEPLTLKESINAIATMPILLENLYVFAIGLENGEIKIVQFDLSTNSWTTLLSF---VAHFDWITRLRFNPV--------PNENKFLLASCSKDRFVK 1850
            D  H  F T SRDK++ +W     +S   +   +PL +++S  A++  P L++N Y+ AIGLENG I +  F   T  W  L      +AH   + RL+F+PV         N +   LASCS D  +K
Sbjct:  662 DSLH--FATSSRDKKVAMWGKNKDESPEFSLCSKPLDVEDSATAVSIAPCLVKNKYLTAIGLENGSIILSIFSNDTG-WEILKKLDQNIAHHLNVNRLKFSPVLGEAGCREKNTDVLQLASCSNDHHMK 787
[Close]
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Planmine SMEST
Match: SMESG000022611.1 (SMESG000022611.1)

HSP 1 Score: 226.868 bits (577), Expect = 5.255e-62
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 3 
Query: 1524 RCFVTVSRDKRMIIWDSDNCARVGEPLTLKESINAIATMPILLENLYVFAIGLENGEIKIVQFDLSTNSWTTLLSFVAHFDWITRLRFNPVPNENKFLLASCSKDRFVK 1850
            RCFVTVSRDKRMIIWDSDNCARVGEPLTLKESINAIATMPILLENLYVFAIGLENGEIKIVQFDLSTNSWTTLLSFVAHFDWITRLRFNPVPNENKFLLASCSKDRFVK
Sbjct:  601 RCFVTVSRDKRMIIWDSDNCARVGEPLTLKESINAIATMPILLENLYVFAIGLENGEIKIVQFDLSTNSWTTLLSFVAHFDWITRLRFNPVPNENKFLLASCSKDRFVK 709
The following BLAST results are available for this feature:
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 1
Match NameE-valueIdentityDescription
Elp29.753e-631.85gene:FBgn0033540 transcript:FBtr0088212[more]
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
R7TWN91.138e-834.78Uncharacterized protein OS=Capitella teleta OX=283... [more]
A0A3P6NT873.147e-837.50WD_REPEATS_REGION domain-containing protein OS=Ani... [more]
A0A0M3J2W23.239e-837.50Elongator complex protein 2 (inferred by orthology... [more]
H2Y8548.172e-735.34WD_REPEATS_REGION domain-containing protein OS=Cio... [more]
A0A4Y2H3G92.128e-634.88Elongator complex protein 2 OS=Araneus ventricosus... [more]
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Elongator complex protein 2 (inferred by orthology to a human protein) vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 1
Match NameE-valueIdentityDescription
SMESG000022611.15.255e-62100.00SMESG000022611.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028703 ID=SMED30028703|Name=Elongator complex protein 2 (inferred by orthology to a human protein)|organism=Schmidtea mediterranea sexual|type=transcript|length=3972bp
TTTTGAAACTATTTAATGACTAATTAATAGTATTTTTTACTTTCGAAATT
TATTGAACCGATATTGTGTGCAGGTATTTATTTTTCCTCTCTTATAGTAT
AAGGTCCTATTCAATGTCCACATGTATTATCTAATATCATTTTTGACTGA
TACACATTTATTACAGGTTAGTTTTTTGATTTATTATTTAAGGTACAGTC
AAATTATTCAGGTCAAATTTAACGTCCATTGATGTGTATTTTTCTGACTT
TATAAACCAGTAAATCTTGAAAATTTTTCTTTTAATACGTTTATAGAAAA
AAACATAATAACAATAACTGTCCTGACATTTATTCCATGGACAATAACAA
ACAAAACTTAAGAAAATTCATAATAATAAAAAACGCGACTTTCTTTTTTT
AGTTTCAGCGAAATTGTTTATTATATTATAATTGACTTCGTTTGATTTGG
TATTCTTTATGCATAAAATTGCTGAATTAGATAGTTTTTATTGGCTGATG
GAATTCTTCAAATAGTTCTTCACCCTTTTCATTAGTGAAAGCGATTTCTC
TGCAGAAAAATATTTATGGCGCCCTAAACAACTATTAGTGAGTGCTTCTT
GAAATTTGGTATTTTTAATTGCACTTTTGAAACTTATTTTTTAAAAGCAT
TGTCTTATCAATTTCTATTATTTTCCACTCTCGGATGACTTTAGCATTTC
ATTTACCAGTGGGGATCAATTTTATTTGGTTCATGTCTTTAACAATCATT
AAATCCTTTTTTATTTTATCGGGTCACTTTTGGTTTATTTTCACTTTTTT
CACTCTGGCAATTTATCAAAATCTTTGCTGTATAAAAATTGATTATTCAT
TTTTTACCAGAATCTTAGGAGTAATATATGTTCTTTTTGAATGTTGCTTT
CAATAAAAATTTGACACTTTGCTTTTTTTGTTTATCTGGGATAGTTTTAG
TATCCTGGACATTTCCTTTAATTTCATTGTAACCATAGGTCTAATTTGTT
ACATTGGTAAAAAAAATTCGTTCTATAATCTTAATGAAAATAAGTAAAAT
GTAGAAACAGATTTTGATTCAATGTCATACATTCGGAATCAAAACCATCT
TTAAATTTTAGCAAATTAGTTATCGTTGATAATTTATGTTTTTCCATCAA
GGATGTCATCTAAGAGGGGTAAGGGGTTTCCACGAAGGAGGCAATATGAG
GTTCATGAAAAGGGGCATAAAAGGACAATAAAAAGTGGGAATCAAAAATT
CCTGCTTTTTGAGGCTGTCCTTAATGGATGCTCTTCTTTATCTGTTTTCG
TCTAAAATTTAATTTATCTTCATTTCCATTCCGTTGTATAAAAAATTATT
AATAATTATAATAATTAAATAGATTTAGTCTTACATTGATATAGTTTCTG
AGATTAATTTTTGATTTTACTTCAATATTACCATGTCAAGACTGAAGCTT
TGGTTATTCCGTGCGATTGCACAGGAATAACCCGGTGTTCAATGTGTACA
TAGCTGATATTGATGATTTTCACAGGTGTTTCGTAACAGTGTCCCGAGAC
AAGAGGATGATTATCTGGGATTCTGACAATTGCGCTCGTGTAGGGGAGCC
TTTGACATTGAAAGAATCAATCAATGCAATTGCTACGATGCCTATTTTAC
TTGAGAATCTTTACGTATTCGCCATTGGACTCGAGAATGGCGAGATCAAA
ATTGTACAATTTGATTTGTCAACCAATAGTTGGACCACGCTTTTATCTTT
CGTTGCTCATTTCGATTGGATAACGCGTCTACGATTCAATCCGGTCCCGA
ATGAGAACAAATTTCTTCTTGCTTCCTGTTCAAAAGATCGATTTGTGAAG
ATTTTTGAAATCAATCAGATAGAATAAATTTTTTTCTTTTTGAGTTCTTT
GTTTTGTTTGTATCTTTCTCATACAGGAATACTATATTGTAAGTGTGTTA
CGAAAATCAATAATTATTGGGCCAAAACAAAGGGCCACGGGAATTTGCTT
GAATATATATATTATTGAACTCAAATCTAACACCAATTAAACACGATAAC
AATTTTAGAAAAACAAAAAAAATATAAAATGAAATAATCCCAAAAGTAAA
TTAATTCGCAAAATGCATTATGTCCAGCAAGAAATCTACATAAAAATAAC
ACGATAACAGAAAATTTGACCAAAATCGGCAATCCATAAAATCCAATCAA
TTAAACAAAGATAAAATATTCTTAATTCAAAAAATTTCAATTTAAAGAAA
ACTAAAAATTTGCCAAGAAAAAATAAAAAATAAGATATATTGAATATTAA
AAAATTGCTCGGTCAAATTCACATTCATAGAAATTTTCTGAAATATTTGC
TAGTGTTTCCGTAGGGACATTTTTAGTTTGCGAATTTATAAAATAATCAA
ATTCTAGTCAAGTGTTGTTTACTGAGTTTGACCCTTTCTTGCTGCTTTAT
AATATGCTTTAGTCTTATTTGTTATATTGCATCGAACTTTTCCGGCTCCC
ATCAACCACACACTGCAAGTGGTGAGTTACAGGATTCATATGCTAGTGCC
TCGATTTATGTTGTAATCTCAACCTATATACAAACATTTAATGATGGTGG
TTACAACTTGTTACCGGTCGATAAGCGACGTTGTGTTGAGGTTCCCATAA
TCTCGACACTGGTTAACAAATTTTATTCAATATAACAAGTATAAAGCTAT
TTACTTCATAAAAATAACAATGTTTGTTTATATATCTAAATTTGTATGTG
TGTGTGTAATCGAATTCATTTTTAGAGCTCAATGTATGCTCTATTTTATT
ATTTCAATAGTCTATATCAATTATGAAATTCTTCTTTAAACTAAGAAGTT
TTGGGTGTGTTGGATCAGTACGAAGTGACCCTGAAATTTGTTTAATTGGA
TCAACAAAGTACTTTACCTTAACATACAGCAACTGTCGGCAAGCAATCTA
ACTAAATTTAATTAAGCAAATAAACAATAAGCTAATAAATTCAACAAGAA
CGAGGAGTCCCTGTAAAACTTTTTTTCAACGGCTATAGACTAAATTTAAT
AAGGATTTAAACATAATAGTTTATTTTTGCAATAATAAAGATTGGGGGTC
ATGACACATCAATTGGAGTGGAAATCTACGAACGGGTATATGAATGTAAT
CAATTGGGGACCAGTTAACCTGGCGATACTATGACGACGCAAGTCGTTCT
AATGGTAGTCAGGAACCCGTAAACGAAGGTTATTCAAGGAGTAGTACTGG
AAACACTGCTCACCTACCTGAATAGTGTCCGGCTGTTATGTACAGTACCA
AGATGGGCTCACTCATGGGTGCATGACAGTAAGAACGTAAGGTTGTGTGG
TGAGTGATAGGAAGGATAGAACTATAGAAGTATAGCGGGATGGGAATAAT
AGTGATAGGTTGCTATGGTGATACATGCAGTTAAACAAGTTTTCCCCGTA
CACCAACTAAACGATTTTGTTTGAATAATTAAAAAGAACCGAAATATATG
ATAATTTGAATTTATTGAAATAAAATGGTGTCAGAAGAAAAAAACATTCA
AAATCGATTTCATCAATATCGTTGCTAGATACAATATGCCCATTTTTCTT
TGACTAGGATCTCCTAACTGCTGATTTTCGATGTCCGACGCTACTTGCAG
TTCCAGATAAACACACGAATATAGATTAATATCATGCTTATATCCATATT
TGTTGCAGGAGTTGAAAAATGCTAAATAAGAATTAGTGACACTAGGAGAT
TCTTTTGAGAAACTAAAAGAAACAGTCATTTCAAAATAAACAGAGTTATG
TAATTGTATTGTGATAATTGATTTCCTTGTCCCCGTAATGCAACCCTTAA
AATTAATGTTTATGATTGCATGCATATTTGATTGATTATTTTGATTGTCC
GTGTCCTTGGATTACATCATTATTTATTAATTCATTCAACGATGCATGTG
CTGTAATATATATTGTCTGTCG
back to top

protein sequence of SMED30028703-orf-1

>SMED30028703-orf-1 ID=SMED30028703-orf-1|Name=SMED30028703-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=115bp
MHAIININFKGCITGTRKSIITIQLHNSVYFEMTVSFSFSKESPSVTNSY
LAFFNSCNKYGYKHDINLYSCVYLELQVASDIENQQLGDPSQRKMGILYL
ATILMKSILNVFFF*
back to top

protein sequence of SMED30028703-orf-2

>SMED30028703-orf-2 ID=SMED30028703-orf-2|Name=SMED30028703-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=107bp
MIIWDSDNCARVGEPLTLKESINAIATMPILLENLYVFAIGLENGEIKIV
QFDLSTNSWTTLLSFVAHFDWITRLRFNPVPNENKFLLASCSKDRFVKIF
EINQIE*
back to top
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: biological process
TermDefinition
GO:0002098tRNA wobble uridine modification
Vocabulary: cellular component
TermDefinition
GO:0033588Elongator holoenzyme complex
Vocabulary: Planarian Anatomy
TermDefinition
PLANA:0002109X1 cell
Vocabulary: INTERPRO
TermDefinition
IPR037289Elp2
IPR036322WD40_repeat_dom_sf
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
Vocabulary: molecular function
TermDefinition
GO:0005515protein binding
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3DG3DSA:2.130.10.10coord: 1..106
e-value: 3.9E-11
score: 44.4
IPR037289Elongator complex protein 2PANTHERPTHR44111FAMILY NOT NAMEDcoord: 12..104
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILYSSF50978WD40 repeat-likecoord: 2..104