Sorting nexin 22
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30028641 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8Note: Hover over icons to view figure legend
Homology
BLAST of Sorting nexin 22 vs. Ensembl Human
Match: SNX24 (sorting nexin 24 [Source:HGNC Symbol;Acc:HGNC:21533]) HSP 1 Score: 73.1738 bits (178), Expect = 4.281e-16 Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIK-SHDSSII---------------TCGVLDALY 498 + + I SFR S+ YT +KI+V + + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF + S K SH ++ TC +L ALY Sbjct: 1 MEVYIPSFRYEESDLERGYTVFKIEVLMNGR-KHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENE-ELPKLFLDFLNVRHLPS----LPKAESCGSFDETESEESSKLSHQPVLLFLRDPYVLPAASGNQTCHLLTALY 159
BLAST of Sorting nexin 22 vs. Ensembl Human
Match: SNX24 (sorting nexin 24 [Source:HGNC Symbol;Acc:HGNC:21533]) HSP 1 Score: 73.1738 bits (178), Expect = 4.281e-16 Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIK-SHDSSII---------------TCGVLDALY 498 + + I SFR S+ YT +KI+V + + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF + S K SH ++ TC +L ALY Sbjct: 1 MEVYIPSFRYEESDLERGYTVFKIEVLMNGR-KHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENE-ELPKLFLDFLNVRHLPS----LPKAESCGSFDETESEESSKLSHQPVLLFLRDPYVLPAASGNQTCHLLTALY 159
BLAST of Sorting nexin 22 vs. Ensembl Human
Match: SNX24 (sorting nexin 24 [Source:HGNC Symbol;Acc:HGNC:21533]) HSP 1 Score: 71.633 bits (174), Expect = 2.236e-15 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSF 420 + + I SFR S+ YT +KI+V + + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF Sbjct: 1 MEVYIPSFRYEESDLERGYTVFKIEVLMNGR-KHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENE-ELPKLFLDFLNVRHLPS----LPKAESCGSF 117
BLAST of Sorting nexin 22 vs. Ensembl Human
Match: SNX22 (sorting nexin 22 [Source:HGNC Symbol;Acc:HGNC:16315]) HSP 1 Score: 64.6994 bits (156), Expect = 2.871e-13 Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 1 Query: 103 SYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYA--LNQFQFGIPEELLNFLNYKQ 369 S+ ++++V + S H+V RRY+EF L+K++ KL KV DFPS+ + W + LE R+ E Y+ LNQ +P+ELL FL + Sbjct: 23 SHMVFRVEV-LCSGRRHTVPRRYSEFHALHKRIKKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQ---EVPKELLEFLRLRH 109
BLAST of Sorting nexin 22 vs. Ensembl Human
Match: SNX22 (sorting nexin 22 [Source:HGNC Symbol;Acc:HGNC:16315]) HSP 1 Score: 65.855 bits (159), Expect = 4.700e-13 Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = 1 Query: 103 SYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYA--LNQFQFGIPEELLNFLNYKQ------------------ADSVKSVLKKPEMSSSFLKVVSISEIKSHDSSIITCGVLDALYS 501 S+ ++++V + H+V RRY+EF L+K++ KL KV DFPS+ + W + LE R+ E Y+ LNQ +P+ELL FL + DS ++P +S V +S + ++ GVL LYS Sbjct: 23 SHMVFRVEVLCSGR-RHTVPRRYSEFHALHKRIKKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQ---EVPKELLEFLRLRHFPTDPKASNWGTLREFLPGDSSSQQHQRPVLSFHVDPYVCNPSPESLPNVVVN-GVLQGLYS 170
BLAST of Sorting nexin 22 vs. Ensembl Zebrafish
Match: snx24 (sorting nexin 24 [Source:ZFIN;Acc:ZDB-GENE-050913-45]) HSP 1 Score: 74.3294 bits (181), Expect = 1.229e-16 Identity = 51/144 (35.42%), Postives = 75/144 (52.08%), Query Frame = 1 Query: 43 MSSIRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIKSHDSSIIT 474 M I + I SFR S YT +KI+V + + H+VE+RY+EF L+K L K+IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF E +S +SS +T Sbjct: 1 MHHIEVSIPSFRSEGSTVEKGYTVFKIEVLMCGR-QHTVEKRYSEFHALHKMLKKIIKPPEIPSKHVRNWVPKVLEQRRQGLELYLQTIIMENEV-LPKIFLDFLNIRHFPS----LPKTESCGSF-------ETESDESSKLT 131
BLAST of Sorting nexin 22 vs. Ensembl Zebrafish
Match: snx22 (sorting nexin 22 [Source:ZFIN;Acc:ZDB-GENE-060825-154]) HSP 1 Score: 58.151 bits (139), Expect = 5.683e-11 Identity = 33/106 (31.13%), Postives = 56/106 (52.83%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQ 369 I + I S + + E +++++ + H V RR+ EF+ L++K+ K+++V DFPS+ K LE R+ E Y+ L Q +P+ELL+FL K Sbjct: 11 IEVFIPSLMREVDETGKLRKLFRVEILFNGR-KHFVLRRHGEFQTLHRKVKKILRVPDFPSKRNQHLRTKPLEQRRQELEDYIQVILYQNDV-VPQELLDFLQVKH 114
BLAST of Sorting nexin 22 vs. Ensembl Zebrafish
Match: snx22 (sorting nexin 22 [Source:ZFIN;Acc:ZDB-GENE-060825-154]) HSP 1 Score: 59.6918 bits (143), Expect = 7.962e-11 Identity = 45/168 (26.79%), Postives = 72/168 (42.86%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFL------------KVVSIS------EIKSHDSSIITCGVLDALYS 501 I + I S + + E +++++ + H V RR+ EF+ L++K+ K+++V DFPS+ K LE R+ E Y+ L Q +P+ELL+FL K E S + +VV S E +S I+ GVL Y Sbjct: 11 IEVFIPSLMREVDETGKLRKLFRVEILFNGR-KHFVLRRHGEFQTLHRKVKKILRVPDFPSKRNQHLRTKPLEQRRQELEDYIQVILYQNDV-VPQELLDFLQVKHFHPTSKNCSSDENQSDYCREQEYRYQSFHQRVVGFSADPYQLESRSDLPDIVVAGVLQGFYP 176
BLAST of Sorting nexin 22 vs. Ensembl Xenopus
Match: snx22 (sorting nexin 22 [Source:NCBI gene;Acc:549386]) HSP 1 Score: 65.4698 bits (158), Expect = 6.569e-13 Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQ 369 I + I S + +++ ++T +++DV + H+++RRY+EF L+K L K KV DFP + + W K E R+ E Y+ L + +P+ELL+FL + Sbjct: 2 IDVYIPSVGHQVYKSDKTHTVFRVDVLFNGR-RHTLDRRYSEFHALHKLLKKTCKVPDFPPKRVPNWMPKVQEQRRQGLEAYIQGVL-WYNTDVPKELLDFLKVRH 105
BLAST of Sorting nexin 22 vs. Ensembl Xenopus
Match: snx24 (sorting nexin 24 [Source:NCBI gene;Acc:548879]) HSP 1 Score: 59.6918 bits (143), Expect = 7.685e-11 Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 1 Query: 97 NSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSV 381 +S ++I+V V + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S+ Sbjct: 26 HSIIPVFRIEVLVNGR-RHFVEKRYSEFHALHKKLKKSIKTPEIPSKHVRNWVPKVLEQRRQGLEAYLQAVIFENE-ELPKIFLDFLNVRHLPSL 118
BLAST of Sorting nexin 22 vs. Ensembl Mouse
Match: Snx24 (sorting nexing 24 [Source:MGI Symbol;Acc:MGI:1916476]) HSP 1 Score: 72.0182 bits (175), Expect = 9.572e-16 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSF 420 + + I SFR S+ YT +KI+V + + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF Sbjct: 1 MEVYIPSFRHEDSDLERGYTVFKIEVLMNGR-KHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENE-ELPKLFLDFLNVRHLPS----LPKAESCGSF 117
BLAST of Sorting nexin 22 vs. Ensembl Mouse
Match: Snx24 (sorting nexing 24 [Source:MGI Symbol;Acc:MGI:1916476]) HSP 1 Score: 72.0182 bits (175), Expect = 9.572e-16 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSF 420 + + I SFR S+ YT +KI+V + + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF Sbjct: 1 MEVYIPSFRHEDSDLERGYTVFKIEVLMNGR-KHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENE-ELPKLFLDFLNVRHLPS----LPKAESCGSF 117
BLAST of Sorting nexin 22 vs. Ensembl Mouse
Match: Snx22 (sorting nexin 22 [Source:MGI Symbol;Acc:MGI:2685966]) HSP 1 Score: 60.4622 bits (145), Expect = 2.758e-11 Identity = 32/91 (35.16%), Postives = 51/91 (56.04%), Query Frame = 1 Query: 103 SYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYA--LNQFQFGIPEELLNFLNYKQ 369 + ++++V + H+V RRY+EF L+K++ K KV DFPS+ + W + LE R+ E Y+ LNQ +P+ELL FL + Sbjct: 23 GHMVFQVEVLYSGR-RHTVPRRYSEFHALHKRIKKRYKVPDFPSKRLPNWRTRGLEQRRQGLETYIQGILYLNQ---DVPKELLEFLRLRH 109
BLAST of Sorting nexin 22 vs. UniProt/SwissProt
Match: sp|Q5U2S5|SNX24_RAT (Sorting nexin-24 OS=Rattus norvegicus OX=10116 GN=Snx24 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 6.696e-15 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSF 420 + + I SFR S+ YT +KI+V + + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF Sbjct: 1 MEVYIPSFRHEDSDLERGYTVFKIEVLMNGR-KHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENE-ELPKLFLDFLNVRHLPS----LPKAESCGSF 117
BLAST of Sorting nexin 22 vs. UniProt/SwissProt
Match: sp|Q9CRB0|SNX24_MOUSE (Sorting nexin-24 OS=Mus musculus OX=10090 GN=Snx24 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 6.696e-15 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSF 420 + + I SFR S+ YT +KI+V + + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF Sbjct: 1 MEVYIPSFRHEDSDLERGYTVFKIEVLMNGR-KHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENE-ELPKLFLDFLNVRHLPS----LPKAESCGSF 117
BLAST of Sorting nexin 22 vs. UniProt/SwissProt
Match: sp|Q9Y343|SNX24_HUMAN (Sorting nexin-24 OS=Homo sapiens OX=9606 GN=SNX24 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.074e-14 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSF 420 + + I SFR S+ YT +KI+V + + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF Sbjct: 1 MEVYIPSFRYEESDLERGYTVFKIEVLMNGR-KHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENE-ELPKLFLDFLNVRHLPS----LPKAESCGSF 117
BLAST of Sorting nexin 22 vs. UniProt/SwissProt
Match: sp|Q17QS1|SNX24_BOVIN (Sorting nexin-24 OS=Bos taurus OX=9913 GN=SNX24 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 4.514e-14 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSF 420 + + I SFR S+ YT +KI+V + + H VE+RY+EF L+KKL K IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + S L K E SF Sbjct: 1 MEVYIPSFRYEESDLERGYTVFKIEVLMNGR-KHFVEKRYSEFHALHKKLKKCIKTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILENE-ELPKLFLDFLNVRHLPS----LPKTESYGSF 117
BLAST of Sorting nexin 22 vs. UniProt/SwissProt
Match: sp|Q96L94|SNX22_HUMAN (Sorting nexin-22 OS=Homo sapiens OX=9606 GN=SNX22 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.257e-12 Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = 1 Query: 103 SYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYA--LNQFQFGIPEELLNFLNYKQ------------------ADSVKSVLKKPEMSSSFLKVVSISEIKSHDSSIITCGVLDALYS 501 S+ ++++V + H+V RRY+EF L+K++ KL KV DFPS+ + W + LE R+ E Y+ LNQ +P+ELL FL + DS ++P +S V +S + ++ GVL LYS Sbjct: 23 SHMVFRVEVLCSGR-RHTVPRRYSEFHALHKRIKKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQ---EVPKELLEFLRLRHFPTDPKASNWGTLREFLPGDSSSQQHQRPVLSFHVDPYVCNPSPESLPNVVVN-GVLQGLYS 170
BLAST of Sorting nexin 22 vs. TrEMBL
Match: A0A2T7NGL7 (PX domain-containing protein OS=Pomacea canaliculata OX=400727 GN=C0Q70_20779 PE=4 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.705e-22 Identity = 55/164 (33.54%), Postives = 92/164 (56.10%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSV--------------KSVLKKPEMSSSFLKVVSISEIKSHDSSIITCGVLDALYS 501 IR+ + SFRKV E + ++T + +DVWV + H+VERRY EFE+L+K++ K+IK +FP + +L+W+NK LE R++ E YL + IP +L+FL K D ++V+ PE ++FL+ + + + +T G+ D+ Y+ Sbjct: 3 IRVSVPSFRKV-KEEDETFTVFLVDVWVSGR-RHTVERRYTEFEDLHKQVKKMIKTPEFPPKKVLKWNNKVLEQRRHGLEAYLQGVVC--CEAIPRPVLHFLEIKTEDDGFEFDMVDHSHKVVHQAVITFPE--NAFLQDIHRGTLPDIVAEGVTIGLFDSDYT 160
BLAST of Sorting nexin 22 vs. TrEMBL
Match: A0A433SQS5 (PX domain-containing protein OS=Elysia chlorotica OX=188477 GN=EGW08_020642 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.349e-21 Identity = 55/158 (34.81%), Postives = 93/158 (58.86%), Query Frame = 1 Query: 49 SIRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSIS-----EIKSHDS--SIITCGVLDALYS 501 +I++ + SFRKV +++ +YTA+ +DVWV S H +E+RY+EFE+L++ L K+ K +FP + +L+W+ K LE R+ + Y L+Q +P LL FL A++ ++ + ++ V+ + + K+ DS +IIT GVL LYS Sbjct: 2 AIQVNVSSFRKV-KDDDETYTAFTVDVWV-SGIHHVIEKRYSEFEKLHQMLKKVAKTPEFPPKKVLKWNPKVLEQRRVGLDAYFQGLLDQET--LPHALLLFLEADSANNTIEFMQAADQKTTHQPVIVLDTSIYLQNKTDDSLPNIITEGVLVGLYS 155
BLAST of Sorting nexin 22 vs. TrEMBL
Match: A0A2C9KNP0 (PX domain-containing protein OS=Biomphalaria glabrata OX=6526 GN=106078665 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 8.623e-20 Identity = 58/159 (36.48%), Postives = 89/159 (55.97%), Query Frame = 1 Query: 49 SIRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLK---KPEMSSSF---LKVVSISEIKSHDS--SIITCGVLDALYS 501 S+++ I SFRKV E + +TA+ +DVW+ ++ H +E+RY+EFE+L+K+L K+IK +FP + +L+W++K LE R+ + Y L IP LL FL D +K +P++S L+ S + K DS II GV LYS Sbjct: 7 SLKVNIPSFRKV-KEGDEVFTAFTVDVWIAGRH-HVIEKRYSEFEDLHKQLKKVIKTPEFPPKKVLKWNSKVLEQRRIGLDTYFQGILENDP--IPNALLVFLETSILDQCFDFIKGEDEPQLSHQVIITLEADSFLKEKKKDSLPDIIKQGVTLGLYS 161
BLAST of Sorting nexin 22 vs. TrEMBL
Match: K1PWQ0 (Sorting nexin-24 OS=Crassostrea gigas OX=29159 GN=CGI_10013035 PE=4 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 5.028e-18 Identity = 58/159 (36.48%), Postives = 94/159 (59.12%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVW-VGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYL-TYALNQFQFGIPEELLNFLN-----YKQADSVKSVLKKPEMSS--SFLKVVSISEIKSHDSSIITCGVLDALYS 501 IR+ I S+ KV+ +NN SYTA+ I+V V + + SV++RY+EFE L+K+L K IK +FP + ++++SNK LE R+ + YL AL + IP+ LL+FL+ Y + + V + S +F V + + ++ I++ GVL ALY+ Sbjct: 2 IRVSIPSYHKVVEDNNDSYTAFIIEVCIVATGKTLSVQKRYSEFEMLHKQLKKQIKTPEFPPKKMMKFSNKVLEQRRLALQTYLQGVALAE---KIPKILLHFLDVEQYMYHGSQELLDVSNRTTHQSMIAFPPEVYLQDNRNGSWDIVSAGVLAALYN 157
BLAST of Sorting nexin 22 vs. TrEMBL
Match: V4A766 (PX domain-containing protein OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_204046 PE=4 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.069e-16 Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYK-QADSVKSV--LKKPEMSSSFLKVVSISEI----KSHDSSI---ITCGVLDALYS*IFS 513 IR+ I SF+KV + +YT Y I+VW S VE+RY+EFEELNK+L KL+ FP + +L+W++K LE+R+ E YL + + P LLNFLN K +DS +S+ L +P + VV + + D + + GVLDA+ + +S Sbjct: 3 IRVFIPSFKKV--KGPQTYTVYTIEVW-NSGRKQIVEKRYSEFEELNKELKKLMATPFFPPKKVLKWNSKVLEHRRQALEAYLKALVERNT--KPIILLNFLNIKIPSDSTESLDRLGRPR-KKCLVPVVGFPDDAFVNEDPDRPLSFAVVDGVLDAINTPCYS 160
BLAST of Sorting nexin 22 vs. Ensembl Cavefish
Match: snx24 (sorting nexin 24 [Source:NCBI gene;Acc:103038979]) HSP 1 Score: 73.1738 bits (178), Expect = 2.312e-16 Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1 Query: 43 MSSIRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSV 381 M I + I SFR + YT +KI+V + + H VE+RY+EF L+K L K+IK + PS+ + W K LE R++ E YL + + + +P+ L+FLN + S+ Sbjct: 1 MHQISVSIPSFRSEDTAAERGYTVFKIEVLMSGR-QHMVEKRYSEFHALHKMLKKIIKPPEIPSKHVRNWVPKVLEQRRHGLELYLQTIIMENEI-LPKIFLDFLNIRHFPSL 111
BLAST of Sorting nexin 22 vs. Ensembl Cavefish
Match: snx24 (sorting nexin 24 [Source:NCBI gene;Acc:103038979]) HSP 1 Score: 73.1738 bits (178), Expect = 3.207e-16 Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 1 Query: 43 MSSIRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSV 381 M I + I SFR + YT +KI+V + + H VE+RY+EF L+K L K+IK + PS+ + W K LE R++ E YL + + + +P+ L+FLN + S+ Sbjct: 1 MHQISVSIPSFRSEDTAAERGYTVFKIEVLMSGR-QHMVEKRYSEFHALHKMLKKIIKPPEIPSKHVRNWVPKVLEQRRHGLELYLQTIIMENEI-LPKIFLDFLNIRHFPSL 111
BLAST of Sorting nexin 22 vs. Ensembl Nematostella
Match: EDO46056 (Predicted protein [Source:UniProtKB/TrEMBL;Acc:A7RR59]) HSP 1 Score: 56.225 bits (134), Expect = 2.712e-10 Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 1 Query: 52 IRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQ-FGIPEELLNFL 357 IRI I +RK+ E+ YT ++I V + VERRY+EF + NKKL ++I+ P ++IL S++ LE R+ E YL + ++ +G+ E L+ + Sbjct: 2 IRISIPKYRKIRDES-GEYTVFEIRVARPGGQAM-VERRYSEFSKFNKKLREIIEPPTLPPKTILNKSSRLLEARREGLEYYLQNLIGIYEVYGLLGEFLDMV 102
BLAST of Sorting nexin 22 vs. Ensembl Medaka
Match: snx24 (sorting nexin 24 [Source:NCBI gene;Acc:101172180]) HSP 1 Score: 74.3294 bits (181), Expect = 9.313e-17 Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 43 MSSIRIRIDSFRKVLSENNS---SYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVK 384 M +R+ I SFR SENNS YT +KIDV + + +S+E+RY+EF L+K L + IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + SV Sbjct: 1 MHPVRVSIPSFR---SENNSIEKGYTVFKIDVLMSGRL-YSIEKRYSEFHALHKMLKRSIKPPEMPSKHVRNWVPKVLEQRRQGLELYLQTIIMENEV-LPKIFLDFLNIRHFPSVP 112
BLAST of Sorting nexin 22 vs. Ensembl Medaka
Match: snx24 (sorting nexin 24 [Source:NCBI gene;Acc:101172180]) HSP 1 Score: 74.3294 bits (181), Expect = 1.366e-16 Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 1 Query: 43 MSSIRIRIDSFRKVLSENNS---SYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVK 384 M +R+ I SFR SENNS YT +KIDV + + +S+E+RY+EF L+K L + IK + PS+ + W K LE R+ E YL + + + +P+ L+FLN + SV Sbjct: 1 MHPVRVSIPSFR---SENNSIEKGYTVFKIDVLMSGRL-YSIEKRYSEFHALHKMLKRSIKPPEMPSKHVRNWVPKVLEQRRQGLELYLQTIIMENEV-LPKIFLDFLNIRHFPSVP 112
BLAST of Sorting nexin 22 vs. Ensembl Medaka
Match: snx22 (sorting nexin 22 [Source:ZFIN;Acc:ZDB-GENE-060825-154]) HSP 1 Score: 43.5134 bits (101), Expect = 8.814e-6 Identity = 25/85 (29.41%), Postives = 44/85 (51.76%), Query Frame = 1 Query: 58 IRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYAL 312 + I S K + E+ S ++++V + H V RR +F+ L+KKL K+I DFPS+ K +E R+ + Y+ ++ Sbjct: 11 VSIPSLEKEVDESGKSRKLFRVEVLFNER-KHYVLRRNGDFQSLHKKLKKIINTPDFPSKRNPHLRTKPMEQRRQELQVYVRSSI 94
BLAST of Sorting nexin 22 vs. Planmine SMEST
Match: SMESG000017900.1 (SMESG000017900.1) HSP 1 Score: 231.491 bits (589), Expect = 6.188e-76 Identity = 114/130 (87.69%), Postives = 122/130 (93.85%), Query Frame = 1 Query: 70 SFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIKSHD 459 +FRKVLSENN+SY+A+KIDV VGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSI RWSNKTLENRK+IF QYLTY+LNQFQFGIPEELLN LNYKQA+SVKSVL KPEMS SFL VSISEIKSH+ Sbjct: 3 NFRKVLSENNNSYSAHKIDVCVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSIFRWSNKTLENRKFIFVQYLTYSLNQFQFGIPEELLNLLNYKQANSVKSVLTKPEMSISFLNAVSISEIKSHE 132
BLAST of Sorting nexin 22 vs. Planmine SMEST
Match: SMESG000034870.1 (SMESG000034870.1) HSP 1 Score: 219.935 bits (559), Expect = 1.634e-74 Identity = 117/153 (76.47%), Postives = 118/153 (77.12%), Query Frame = 1 Query: 43 MSSIRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIKSHDSSIITCGVLDALYS 501 MSSIRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKK YALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIK+HDSSIITCGVLDALYS Sbjct: 1 MSSIRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKK-----------------------------------YALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIKAHDSSIITCGVLDALYS 118
BLAST of Sorting nexin 22 vs. Planmine SMEST
Match: SMESG000006895.1 (SMESG000006895.1) HSP 1 Score: 208.764 bits (530), Expect = 5.050e-70 Identity = 102/111 (91.89%), Postives = 106/111 (95.50%), Query Frame = 1 Query: 127 VWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIKSHD 459 + VGSKYSHSVERRYNEFEELNKKL+KLIKVTDFPSRSILRWSNKTLENRK+IFEQYLTYALNQFQFGIPEELLN LNYKQADSVKSVL KPEMSSS LK VSISEIKSH+ Sbjct: 1 MCVGSKYSHSVERRYNEFEELNKKLNKLIKVTDFPSRSILRWSNKTLENRKFIFEQYLTYALNQFQFGIPEELLNLLNYKQADSVKSVLTKPEMSSSLLKAVSISEIKSHE 111
BLAST of Sorting nexin 22 vs. Planmine SMEST
Match: SMESG000024585.1 (SMESG000024585.1) HSP 1 Score: 199.134 bits (505), Expect = 2.586e-63 Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1 Query: 151 HSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIKSHD 459 HSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRK+IFEQYLTYALNQFQFGIPEELLN LNYKQADSVKSVL KPEMSSSFLK VSISEIKSH+ Sbjct: 151 HSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKFIFEQYLTYALNQFQFGIPEELLNLLNYKQADSVKSVLTKPEMSSSFLKAVSISEIKSHE 253
BLAST of Sorting nexin 22 vs. Planmine SMEST
Match: SMESG000069022.1 (SMESG000069022.1) HSP 1 Score: 182.956 bits (463), Expect = 7.523e-60 Identity = 97/132 (73.48%), Postives = 105/132 (79.55%), Query Frame = 1 Query: 55 RIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNKKLSKLIKVTDFPSRSILRWSNKTLENRKYIFEQYLTYALNQFQFGIPEELLNFLNYKQADSVKSVLKKPEMSSSFLKVVSISEIK 450 ++ + +FRKVLSENN+SY AYKID VGS+ KLSKLIKVTDFPSRSILRWSNKTLENRK+ FEQYLTYALNQFQFGI EELLN LNYKQADSVKSVL KPEMSSSFLK VSISE+K Sbjct: 8 KVLMLNFRKVLSENNNSYAAYKIDACVGSE-----------------KLSKLIKVTDFPSRSILRWSNKTLENRKFNFEQYLTYALNQFQFGIYEELLNLLNYKQADSVKSVLTKPEMSSSFLKAVSISEMK 122 The following BLAST results are available for this feature:
BLAST of Sorting nexin 22 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 5
BLAST of Sorting nexin 22 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of Sorting nexin 22 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of Sorting nexin 22 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of Sorting nexin 22 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 2
BLAST of Sorting nexin 22 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 3
BLAST of Sorting nexin 22 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of Sorting nexin 22 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of Sorting nexin 22 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 2
BLAST of Sorting nexin 22 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of Sorting nexin 22 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of Sorting nexin 22 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 1
BLAST of Sorting nexin 22 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 3
BLAST of Sorting nexin 22 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30028641 ID=SMED30028641|Name=Sorting nexin 22|organism=Schmidtea mediterranea sexual|type=transcript|length=559bpback to top protein sequence of SMED30028641-orf-1 >SMED30028641-orf-1 ID=SMED30028641-orf-1|Name=SMED30028641-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=154bp MSSIRIRIDSFRKVLSENNSSYTAYKIDVWVGSKYSHSVERRYNEFEELNback to top Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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