ARMC1
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30028549 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 8
Homology
BLAST of ARMC1 vs. Ensembl Human
Match: ARMC1 (armadillo repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:17684]) HSP 1 Score: 69.3218 bits (168), Expect = 8.676e-13 Identity = 54/229 (23.58%), Postives = 104/229 (45.41%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYK---ASVKRFTSVIKKEPKIKDSFKIKNSR--NFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPEPSS 732 V L+ ++ +PL+ R + QD C+ GLIL + V+ L L N++ ++ +G+ L+ + + + + AS++ + L A F + + K + N R ++ ++GL D + L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ S F DT ++ E +PDYLPE S Sbjct: 18 VNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDSFNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDYLPEDES 246
BLAST of ARMC1 vs. Ensembl Human
Match: ARMC1 (armadillo repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:17684]) HSP 1 Score: 50.8322 bits (120), Expect = 5.439e-7 Identity = 38/172 (22.09%), Postives = 82/172 (47.67%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVK---RFTSVIKKEPKIKDSFKIKNSR--NFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNS 579 V L+ ++ +PL+ R + QD C+ GLIL + V+ L L N++ ++ +G+ L+ + + + + AS++ + L +++ F + + K + N R ++ ++GL D + L+ ++GV+S TFQ+ ++R +V++ S Sbjct: 18 VNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDSFNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRS 189
BLAST of ARMC1 vs. Ensembl Human
Match: ARMC1 (armadillo repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:17684]) HSP 1 Score: 48.9062 bits (115), Expect = 2.349e-6 Identity = 24/79 (30.38%), Postives = 43/79 (54.43%), Query Frame = 1 Query: 505 LINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPE 723 L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ S F DT ++ E +PDYLPE Sbjct: 63 LLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDYLPE 141
BLAST of ARMC1 vs. Ensembl Zebrafish
Match: armc1 (armadillo repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-041212-33]) HSP 1 Score: 63.929 bits (154), Expect = 3.976e-11 Identity = 53/241 (21.99%), Postives = 116/241 (48.13%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLY-----KASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDV----SENII-----GEVISSYKNFNDTTIKNESIISIPDYLPE---PSSNVAKSV 750 V L+ ++ +PL+ R++ +D C GLIL L +V+ L L N++ ++ +G+ L+ + + S + AS++ L +A + +++ + K ++ +++++GL D + L+ ++GV+S TFQ+ +KR +V++ S + + + AI+ ++ ++ E++ ++ +D + E +++PDYLPE PS K+V Sbjct: 11 VNQLRDLAADPLNRRVIVEDQGCFSGLILFLDHPNPQVVYSALLAVRYLAECRANREKMKGELGMMLSLQNVMQKGTSPGETKLLASEIYEILQNSSSAEAEQAEAGASCRRKAQFFLGATNKRAKTVVLQIDGLDDSSRRSLCEEALLKIKGVISFTFQMAVKRCVVRIRSDLKAEALGTAIASTKVMKAQQVVKGEDGAELVIPFQEDSDVVV--EQNLNLPDYLPEDESPSQEQHKAV 249
BLAST of ARMC1 vs. Ensembl Zebrafish
Match: armc1 (armadillo repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-041212-33]) HSP 1 Score: 60.4622 bits (145), Expect = 4.511e-10 Identity = 48/228 (21.05%), Postives = 110/228 (48.25%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLY-----KASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDV----SENII-----GEVISSYKNFNDTTIKNESIISIPDYLP 720 V L+ ++ +PL+ R++ +D C GLIL L +V+ L L N++ ++ +G+ L+ + + S + AS++ L +A + +++ + K ++ +++++GL D + L+ ++GV+S TFQ+ +KR +V++ S + + + AI+ ++ ++ E++ ++ +D + E +++PDYLP Sbjct: 11 VNQLRDLAADPLNRRVIVEDQGCFSGLILFLDHPNPQVVYSALLAVRYLAECRANREKMKGELGMMLSLQNVMQKGTSPGETKLLASEIYEILQNSSSAEAEQAEAGASCRRKAQFFLGATNKRAKTVVLQIDGLDDSSRRSLCEEALLKIKGVISFTFQMAVKRCVVRIRSDLKAEALGTAIASTKVMKAQQVVKGEDGAELVIPFQEDSDVVV--EQNLNLPDYLP 236
BLAST of ARMC1 vs. Ensembl Zebrafish
Match: armc1l (armadillo repeat containing 1, like [Source:ZFIN;Acc:ZDB-GENE-030131-9819]) HSP 1 Score: 58.151 bits (139), Expect = 3.497e-9 Identity = 66/267 (24.72%), Postives = 117/267 (43.82%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRF--TSVIKKEPKIKDSFKI----KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTD-YLW 840 V L+ ++ P + ++ QD C+ GL+L L KV+ L+ L + N +R +G+ LE L R T I A ++ + L S + T +K+ K K F I K +++ + + GL + + L+ ++GV+S TFQ+ +KR V++ + + + + AI+ +V+ + + K E +PDYLPE S K ++ V T + + GS LN + T + W Sbjct: 8 VTQLRDLASEPQNREVIVQDQGCLPGLVLFLDHKDPKVLFATLQALRYLAESPRNINTMRNELGMMVSLESLIKRTDLTTDITDLAKEVHDLLNAQSQRPGCQTPEQQKKKKNKPQFFINSTNKKAKSVTLHIQGLDGADQRGVCEEALLRVKGVISFTFQMALKRCTVRIRADLPTESLATAIASTKVLSAKQVVKDENGEEVLIPLSTSGSKVEENSHLPDYLPEEESP-EKELDRAVSRTGAKQDAGGSWLNTAASFLTKTFYW 273
BLAST of ARMC1 vs. Ensembl Xenopus
Match: ppip5k1 (diphosphoinositol pentakisphosphate kinase 1 [Source:Xenbase;Acc:XB-GENE-6258750]) HSP 1 Score: 73.559 bits (179), Expect = 2.698e-14 Identity = 68/274 (24.82%), Postives = 121/274 (44.16%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRY---------------LSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISS------YKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYL 837 V L+ ++ +PL+ + +D +C+ GLIL LS E V+ L+ L + + +R +G+ + LE L++RY L HM + K K +P + K ++ + ++GL D E + L+ ++GV+S TFQ+ ++R V+V + + + AI++ +VI S Y ++ + E + +PDYLPE S K ++ V+ T S GS +N A T++L Sbjct: 7 VTHLRDLASDPLNRTSIVRDKSCLAGLILFLSHQDEYVVESALKALIYLCEDPAHCGIIRNELGMMESLENLKNRYDIDDEVKQLGRRIQILLNPPAHMHTPETNGK-------------KNKPCFFATSCNKRAKTVTLYIHGLCDAEKKHLCEEALLKVKGVISFTFQIAMQRCTVRVKPDLETECLASAIAETRVLRAQQVIRSESGNEIYVPLHEMNVTVEKNLCLPDYLPEEVSP-QKDLDKAVIPTGSKNDCQGSWIN----AATNFL 262
BLAST of ARMC1 vs. Ensembl Xenopus
Match: armc1 (armadillo repeat containing 1 [Source:NCBI gene;Acc:493368]) HSP 1 Score: 67.781 bits (164), Expect = 2.540e-12 Identity = 52/229 (22.71%), Postives = 108/229 (47.16%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIK-KEPKIKDSFKI----KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPEPSS 732 V L+ ++ +PL+ R + QD C+ GLIL L +V+ L L +N++ +R +G+ L+ + + + + A+++ + L S + + + K F + K ++ ++ ++GL D ++ L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ F D+ ++ E +PDYLPE S Sbjct: 11 VNQLRDLASDPLNRRAIVQDQGCLPGLILFLDHPNPQVVYSALLALRYLAECLSNREKMRCELGMMLSLQNVIQKTTTPGDTQLLATEVYDLLQGTSTGDGDCMNEMNSRRRKAQFFLGATNKRAKTVVLHIDGLDDTSRRSLCEDALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKGETGEELLVAFQDSPVEVEQNTDLPDYLPEDES 239
BLAST of ARMC1 vs. Ensembl Xenopus
Match: armc1 (armadillo repeat containing 1 [Source:NCBI gene;Acc:493368]) HSP 1 Score: 67.781 bits (164), Expect = 2.876e-12 Identity = 52/229 (22.71%), Postives = 108/229 (47.16%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIK-KEPKIKDSFKI----KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPEPSS 732 V L+ ++ +PL+ R + QD C+ GLIL L +V+ L L +N++ +R +G+ L+ + + + + A+++ + L S + + + K F + K ++ ++ ++GL D ++ L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ F D+ ++ E +PDYLPE S Sbjct: 13 VNQLRDLASDPLNRRAIVQDQGCLPGLILFLDHPNPQVVYSALLALRYLAECLSNREKMRCELGMMLSLQNVIQKTTTPGDTQLLATEVYDLLQGTSTGDGDCMNEMNSRRRKAQFFLGATNKRAKTVVLHIDGLDDTSRRSLCEDALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKGETGEELLVAFQDSPVEVEQNTDLPDYLPEDES 241
BLAST of ARMC1 vs. Ensembl Xenopus
Match: ppip5k1 (diphosphoinositol pentakisphosphate kinase 1 [Source:Xenbase;Acc:XB-GENE-6258750]) HSP 1 Score: 64.6994 bits (156), Expect = 2.141e-11 Identity = 64/255 (25.10%), Postives = 115/255 (45.10%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRF--TSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYL 837 V L+ ++ +PL+ + +D +C+ GLIL LS E V+ L+ L + + +R +G+ + LE L++RY + +++ L + T+ K +P + K ++ + ++GL D E + L+ ++GV+S TFQ+ ++R V+V + E+ N T KN + +PDYLPE S K ++ V+ T S GS +N A T++L Sbjct: 7 VTHLRDLASDPLNRTSIVRDKSCLAGLILFLSHQDEYVVESALKALIYLCEDPAHCGIIRNELGMMESLENLKNRYDIDDEVKQLGRRIQILLNPPAHMHTPETNGKKNKPCFFATSCNKRAKTVTLYIHGLCDAEKKHLCEEALLKVKGVISFTFQIAMQRCTVRVKPDLET----------------EIYVPLHEMNVTVEKN---LCLPDYLPEEVSP-QKDLDKAVIPTGSKNDCQGSWIN----AATNFL 237
BLAST of ARMC1 vs. Ensembl Mouse
Match: Armc1 (armadillo repeat containing 1 [Source:MGI Symbol;Acc:MGI:1921502]) HSP 1 Score: 67.781 bits (164), Expect = 2.400e-12 Identity = 53/229 (23.14%), Postives = 103/229 (44.98%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYK---ASVKRFTSVIKKEPKIKDSFKIKNSR--NFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPEPSS 732 V L+ ++ +PL+ R + QD C+ GLIL + V+ L L N++ ++ +G+ L+ + + + + AS++ + L A F + + K + N R ++ ++GL D + L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ S F D ++ E +PDYLPE S Sbjct: 18 VNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNLADGDSFNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDAPVEVEENTELPDYLPEDES 246
BLAST of ARMC1 vs. UniProt/SwissProt
Match: sp|Q9NVT9|ARMC1_HUMAN (Armadillo repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=ARMC1 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 4.167e-12 Identity = 54/229 (23.58%), Postives = 104/229 (45.41%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYK---ASVKRFTSVIKKEPKIKDSFKIKNSR--NFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPEPSS 732 V L+ ++ +PL+ R + QD C+ GLIL + V+ L L N++ ++ +G+ L+ + + + + AS++ + L A F + + K + N R ++ ++GL D + L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ S F DT ++ E +PDYLPE S Sbjct: 18 VNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDSFNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDYLPEDES 246
BLAST of ARMC1 vs. UniProt/SwissProt
Match: sp|Q3ZBE1|ARMC1_BOVIN (Armadillo repeat-containing protein 1 OS=Bos taurus OX=9913 GN=ARMC1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 4.368e-12 Identity = 54/229 (23.58%), Postives = 104/229 (45.41%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYK---ASVKRFTSVIKKEPKIKDSFKIKNSR--NFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPEPSS 732 V L+ ++ +PL+ R + QD C+ GLIL + V+ L L N++ ++ +G+ L+ + + + + AS++ + L A F + + K + N R ++ ++GL D + L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ S F DT ++ E +PDYLPE S Sbjct: 18 VNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKSTTPGETKLLASEIYDILQSSNMADGDSFNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDYLPEDES 246
BLAST of ARMC1 vs. UniProt/SwissProt
Match: sp|Q5RCR8|ARMC1_PONAB (Armadillo repeat-containing protein 1 OS=Pongo abelii OX=9601 GN=ARMC1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.131e-11 Identity = 54/229 (23.58%), Postives = 104/229 (45.41%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYK---ASVKRFTSVIKKEPKIKDSFKIKNSR--NFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPEPSS 732 V L+ ++ +PL+ R + QD C+ GLIL + V+ L L N++ ++ +G+ L+ + + + + AS++ + L A F + + K + N R ++ ++GL D + L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ S F DT ++ E +PDYLPE S Sbjct: 18 VNQLRDLAADPLNRRAIVQDQGCLPGLILSMDHPNPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNMADGDSFNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTELPDYLPEDES 246
BLAST of ARMC1 vs. UniProt/SwissProt
Match: sp|Q5ZMQ0|ARMC1_CHICK (Armadillo repeat-containing protein 1 OS=Gallus gallus OX=9031 GN=ARMC1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.217e-11 Identity = 56/238 (23.53%), Postives = 113/238 (47.48%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKE-PKIKDSFKI----KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPE---PSSNVAKSV 750 V L+ ++ +PL+ R + QD C+ GLIL L V+ L L N++ ++ +G+ L+ + + + + AS++ + L +++ +V + + K F + K ++ ++ ++GL D + L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ S F DT ++ E +P+YLPE PS K+V Sbjct: 15 VNQLRDLAADPLNRRAIVQDQGCLPGLILFLDHPSPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEVYDILQSSNMSDMDNVNEMNYRRRKAQFFLGSTNKRAKTVVLHIDGLDDSSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALATAIASTKVMKAQQVVKSESGEEMLVPFQDTPVEVEQNTDLPEYLPEDESPSKEQDKAV 252
BLAST of ARMC1 vs. UniProt/SwissProt
Match: sp|Q9D7A8|ARMC1_MOUSE (Armadillo repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Armc1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.678e-11 Identity = 53/229 (23.14%), Postives = 103/229 (44.98%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYK---ASVKRFTSVIKKEPKIKDSFKIKNSR--NFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FNDTTIKNESIISIPDYLPEPSS 732 V L+ ++ +PL+ R + QD C+ GLIL + V+ L L N++ ++ +G+ L+ + + + + AS++ + L A F + + K + N R ++ ++GL D + L+ ++GV+S TFQ+ ++R +V++ S + + + AI+ +V+ S F D ++ E +PDYLPE S Sbjct: 18 VNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLLASEIYDILQSSNLADGDSFNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQDAPVEVEENTELPDYLPEDES 246
BLAST of ARMC1 vs. TrEMBL
Match: H9CXV5 (ARMC1 OS=Schmidtea mediterranea OX=79327 PE=2 SV=1) HSP 1 Score: 516.538 bits (1329), Expect = 0.000e+0 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 Query: 64 MNHQTVQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYLW 840 MNHQTVQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYLW Sbjct: 1 MNHQTVQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYLW 259
BLAST of ARMC1 vs. TrEMBL
Match: A0A210QYH9 (Armadillo repeat-containing protein 1 OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT08455 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.128e-14 Identity = 73/249 (29.32%), Postives = 121/249 (48.59%), Query Frame = 1 Query: 73 QTVQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSF--------------------KIKNSR--NFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISD----VSENII----GE--VISSYKNFNDTTIKNESIISIPDYLPE 723 +T+ LK M+ +P L +D TCIGGLI++LS+ KV+ LE L +++ LR+F+G+ QLE + R + AS L KLY T V + P +KD+F + N R + I+++ GL D E + L+ ++GV+SITF L KR I++ V + +++A+S +++ +I GE ++S N + +N ++PDYLP+ Sbjct: 5 ETITALKGMASDPKKRSFLLKDLTCIGGLIMVLSNPDVKVVTVALETLLLLADRADHRSTLRDFLGMTDQLETIMRR----SSYDKKASNLAEKLYVT----LTQVDLQTP-LKDTFNRSTVSGQSSKKSSTSKNNRSVLNGRAKHIILQIRGLIDKADRELVMRLLLQVKGVVSITFDLNKKRCILRTKQEVKPETLVQAVSKSQTMIAQQVIKDDNGEEMLLSFGSNHQEMDKEN---TTLPDYLPD 241
BLAST of ARMC1 vs. TrEMBL
Match: A0A444UNL2 (Armadillo repeat-containing protein 1 OS=Acipenser ruthenus OX=7906 GN=EOD39_11481 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.468e-13 Identity = 67/261 (25.67%), Postives = 126/261 (48.28%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECL--------ESRYLSGTVIHM---SASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDV----SENII-----GEVISSYKNFNDTTIKNESIISIPDYLPE---PSSNVAKSVEVPVVSTLSIRSGF 792 V L+ ++ +PL+ R + QD C+ GLIL L +V+ L L +N++ +R +G+ Q LE + E++ L+ + + S++ + ++ +AS +R T K ++ ++ ++GL D + L+ ++GV+S TFQ+ +KR IV++ S + + + AI+ ++ I+ EV+ S++ D ++ E +PDYLPE PS + K+V V T SG+ Sbjct: 11 VNQLRDLAADPLNRRAIVQDQGCLPGLILFLDQPNPQVVYSALLAVRYLAECRSNREKMRGELGMMQSLENVMKKTTTPGETKLLASEIYEILKSSSNAVTDQAEQASYRRKTQFFLGATN-------KRAKTVVLHIDGLDDAARRSLCEEALLKIKGVISFTFQMTVKRCIVRIRSDLKAEALGTAIASTKIMKAQQIVKGEDGDEVMISFE--EDAPVEAEQNTDLPDYLPEEESPSKELDKAVS--RVGTKQDASGW 260
BLAST of ARMC1 vs. TrEMBL
Match: A0A0R3UPQ8 (Uncharacterized protein OS=Mesocestoides corti OX=53468 GN=MCOS_LOCUS9840 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.750e-12 Identity = 60/185 (32.43%), Postives = 102/185 (55.14%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLY------KASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAIS 615 ++ K ++L+ LS L +D T +GGL++LLS+++E + +IL IF L +L + G+ +QL L++ SG + +L + L+ KA +KR S + PK K + SR +I+L+G + ++ I++ LI ++GV+SITFQL RV+V + + ILEA+S Sbjct: 5 LESFKKLALDDLSYSSLLKDNTSLGGLVILLSNEKESAVEEILNIFKILSERNGGSYYLSKLPGMMEQLSSLKA---SGESHSVRIRELTDDLFETLFSSKAHLKRMPSQSHR-PK-----KSRKSRPVVIQLSGNITKQDLKAIESQLITVKGVVSITFQLNKLRVVVMALDDLDPERILEAVS 180
BLAST of ARMC1 vs. TrEMBL
Match: H2TMD7 (Armadillo repeat-containing protein 1 OS=Takifugu rubripes OX=31033 GN=LOC101063538 PE=4 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 2.673e-12 Identity = 71/273 (26.01%), Postives = 122/273 (44.69%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRF-------TSVIKKEP---KIKDSFKI----KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN------FN-DTTIKNESIISIPDYLPE---PSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAF 825 V L+ ++ +P++ R + QD C+ GLIL L +V+ L L NK+ L+ +G+ L+ V+ S + + KL A V + S EP + K F + K ++ ++ + GL D + L+ + GV+S TFQ+ ++R IV+V S + Q + AI+ +V+ F+ D +++ E + +PDYLPE PS K+V V S+ + S G+ N S++F Sbjct: 11 VNQLRDLAADPMNRRAIVQDQGCLPGLILFLDHTNPQVVYSALLAIRYLAECRVNKEKLKGELGMMLSLQ---------NVMQKSTTPGETKLLAAGVYQLLQASGGAESGASGEPAAGRRKAQFFLGCSNKRAKTVVLHVQGLDDPSRRRLCEEVLLKIRGVISFTFQMTVRRCIVRVRSDLKAQALASAIASTQVMRAQQVVRGETGDEVLIPFDEDRSLQTEPNVDLPDYLPEDESPSQEPDKAVSR-VGSSQAGNSWLGAATNFMSRSF 273
BLAST of ARMC1 vs. Ensembl Cavefish
Match: armc1 (armadillo repeat-containing protein 1 [Source:NCBI gene;Acc:103047274]) HSP 1 Score: 69.707 bits (169), Expect = 3.271e-13 Identity = 63/257 (24.51%), Postives = 121/257 (47.08%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKAS-VKRFTSVIKKEPKIKDSFKI----KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENII-----------GEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSL 801 V L+ ++ +PL+ R + +D C+ GLIL L +V+ L L N++ L+ +G+ L+ + + S + AS++ L AS + + + K F + K ++ +++++GL D + L+ + GV+S TFQ+ +KR +V++ S + + + AI+ S N++ EV+ ++ D+++ E + +PDYLPE S A+ V S++ G G L Sbjct: 11 VNQLRDLAADPLNRRAIVEDHGCLPGLILFLDHPNPQVVYSALLAVRYLAECRANREKLKGELGMMLSLQNVMQKGTSPGETKLLASEIYEILQNASNAETEQAEAAASCRRKAQFFLGSTNKRAKTVVLQIDGLDDSSRRSLCEEALLKIRGVISFTFQMAVKRCVVRIRSDLKAEALGSAIA--STNVMKAQQVVKGEDGSEVVIPFQ--EDSSMVVEQNMDLPDYLPEDESP-AQEQHKAVSRLGSMQDGVGWL 262
BLAST of ARMC1 vs. Ensembl Cavefish
Match: armc1l (armadillo repeat-containing protein 1-like [Source:NCBI gene;Acc:103028287]) HSP 1 Score: 69.3218 bits (168), Expect = 6.169e-13 Identity = 63/269 (23.42%), Postives = 120/269 (44.61%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKI------KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAIS--------DVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTD-YLW 840 V L+ ++ P + + QD C+ GL+L L +V+ L+ L + N ++ +G+ LE L + T + + L +++ T ++P+ K+ + K +++ + + GL + ++ L+ ++GV+S TFQ+ +KR V+V + + + + AI+ V +N GE + + + T +K E IPDYLPE S K ++ V T + + GS LN + T + W Sbjct: 35 VSQLRDLASEPQNREAIVQDQGCLPGLVLFLDHKDPQVVFATLQTLRYLAESSQNINIMKNELGMMVTLESL----IENTAMTSDITDLAKEVHGVLSAMDTFRTPEQPRRKNKHQFFINSSNKKAKSVTLHIQGLDGNDQRGVCEDALLKVKGVISFTFQMALKRCTVRVRADLPTESLASAIASTKVLSAQQVVKNESGEEV--FIPLSTTGMKVEQNSQIPDYLPEDESP-EKELDRAVSRTAAKQESGGSWLNTAASFLTKTFYW 296
BLAST of ARMC1 vs. Ensembl Cavefish
Match: ENSAMXT00000051956.1 (armadillo repeat-containing protein 1-like [Source:NCBI gene;Acc:103027258]) HSP 1 Score: 64.6994 bits (156), Expect = 2.033e-11 Identity = 61/268 (22.76%), Postives = 123/268 (45.90%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECL--------ESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDV----SENIIG-----EVISSYKNFNDTTIKNESIISIPDYLPEPSS-NVAKSVEVPVVSTLSIRSGF-GSLLNRFSQAF 825 V L+ ++ +PL+ R + +D CI GLIL L +V+ L+ L N++ + G+ L+ + E+R L+ V + + + + T+ +++ + K ++ + ++GL D E + L+ + GV+S TFQ+ +KR IV++ S ++ + + AI+ +++++ EV+ + + I++P+YL E S +V K + V + S SG+ S N S++F Sbjct: 11 VNQLRELTADPLNRRAIAEDQGCIPGLILFLDHSNPEVVYSALQALRYLSECRANREKMSGEFGMLLSLQNIVEKTTTPGETRLLASEVYELLRNAGADGGGEDERGEETASCRRKAQFFLGSSNKRAKTVTLHIDGLDDSERRTLCEEVLLRIRGVISFTFQMAVKRCIVRIRSDLTAETLGSAIASTKVLKAQHVVKTENGEEVLIPFHEEGEEEDNAPVSINLPEYLSEDDSPSVEKEKVLSRVGSASEGSGWLASATNFLSRSF 278
BLAST of ARMC1 vs. Ensembl Medaka
Match: ENSORLT00000009087.2 (armadillo repeat-containing protein 1 [Source:NCBI gene;Acc:101173737]) HSP 1 Score: 68.1662 bits (165), Expect = 1.153e-12 Identity = 64/270 (23.70%), Postives = 120/270 (44.44%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEP-------KIKDSFKI----KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKN-------FNDTTIKNESIISIPDYLPE---PSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAF 825 V L+ ++ +P++ + + QD C+ GLIL L +V+ L L N++ LR +G+ L+ + + + + AS++ L AS EP + K F + K ++ +++++GL D + L+ + GV+S TFQ+ +KR IV++ S + + + AI+ +V+ + D ++ E +P+YLPE PS K+V + S+ S G+ N S++F Sbjct: 11 VNQLRDLAADPMNRQAIVQDQGCLPGLILFLDHPNPQVVYSALLAIRYLAECRANREKLRGELGMMLSLQNIMQKSTTPGETKLLASEIYELLQAASAA------DSEPAGAAVSSRRKAQFFLGSSNKRAKTVVLQIDGLDDSSRRSLCEEALLKIRGVISFTFQMAVKRCIVRIRSDLKAEALGSAIASTQVMKAQQVVKTENGDEVLVPFAEDGSVAVERNEDLPEYLPEDESPSQEPDKAV-TRIGSSQDGASWLGAAANFLSRSF 273
BLAST of ARMC1 vs. Ensembl Medaka
Match: armc1 (armadillo repeat-containing protein 1 [Source:NCBI gene;Acc:101157737]) HSP 1 Score: 67.781 bits (164), Expect = 1.575e-12 Identity = 64/267 (23.97%), Postives = 120/267 (44.94%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKAS--VKRFTSVIKKEPKIKDSFKI----KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDV----SENII-----GEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSL---LNRFSQAF 825 V L+ ++ +PL+ R + +D C+ GLIL +V+ L L N++ ++ +G+ L+ + + S + AS++ L A + K F + K ++ ++ ++GL D + L+ + GV+S TFQ+ +KR +V++ S + + + AI+ ++ ++ GE+I ++ DT + E IPDYLPE S ++ + V SI G G L N S++F Sbjct: 11 VNQLRDLAADPLNRRAIVEDQGCLPGLILFFDHPNPQVVYSALLAVRYLAECRANREKMKSELGMMLSLQNVMQKSTSPGETKLLASEIYEILQSAGKEEAEQAEAAAASCRRKAHFFLGSNNKRAKTVVLHIDGLDDSARRGLCEEALLKIRGVISFTFQMAVKRCVVRIRSDLKAEALGTAINSTKVMKAQQVMKTDDGGEMIVPFQ--EDTAVLVEENTDIPDYLPEDESP-SQEQDKAVTRIGSITDGMGWLSTAANFLSRSF 274
BLAST of ARMC1 vs. Ensembl Medaka
Match: armc1 (armadillo repeat-containing protein 1 [Source:NCBI gene;Acc:101157737]) HSP 1 Score: 67.781 bits (164), Expect = 1.575e-12 Identity = 64/267 (23.97%), Postives = 120/267 (44.94%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKAS--VKRFTSVIKKEPKIKDSFKI----KNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDV----SENII-----GEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSL---LNRFSQAF 825 V L+ ++ +PL+ R + +D C+ GLIL +V+ L L N++ ++ +G+ L+ + + S + AS++ L A + K F + K ++ ++ ++GL D + L+ + GV+S TFQ+ +KR +V++ S + + + AI+ ++ ++ GE+I ++ DT + E IPDYLPE S ++ + V SI G G L N S++F Sbjct: 11 VNQLRDLAADPLNRRAIVEDQGCLPGLILFFDHPNPQVVYSALLAVRYLAECRANREKMKSELGMMLSLQNVMQKSTSPGETKLLASEIYEILQSAGKEEAEQAEAAAASCRRKAHFFLGSNNKRAKTVVLHIDGLDDSARRGLCEEALLKIRGVISFTFQMAVKRCVVRIRSDLKAEALGTAINSTKVMKAQQVMKTDDGGEMIVPFQ--EDTAVLVEENTDIPDYLPEDESP-SQEQDKAVTRIGSITDGMGWLSTAANFLSRSF 274
BLAST of ARMC1 vs. Ensembl Medaka
Match: armc1l (armadillo repeat-containing protein 1-like [Source:NCBI gene;Acc:101165191]) HSP 1 Score: 54.6842 bits (130), Expect = 4.042e-8 Identity = 60/254 (23.62%), Postives = 112/254 (44.09%), Query Frame = 1 Query: 79 VQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKAS---VKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAIS--------DVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLN 807 V L+ ++ P + + QD C+ GL+L L +V+ L+ L N ++ +G+ LE L R I A ++ N L + + + +K+P+ + K +++ + + GL + + L+ ++GV+S TFQ+ KR V++ S + +++ AI+ V +N GE + N T + S ++PDYLPE + + V+ + T + GS LN Sbjct: 8 VCQLRDLASEPQNREAIVQDQGCLPGLVLFLDHQDAEVLFATLQTLRYLAELTPNITTMKNELGMMVSLENLIGRDELSVDITALAKEVYNILSQPANPAPRTPERQRRKKPQFFINSSSKKAKSVTLHIQGLDSTQQRSLCEEALLTVKGVISFTFQMASKRCTVRIRSDLPTENLATAIAATKVLSAQQVVKNETGEEVYIPLNPAGTEVPQNS--ALPDYLPEEEESPEREVDRAISRTAAKEDSSGSWLN 259
BLAST of ARMC1 vs. Planmine SMEST
Match: SMESG000075605.1 (SMESG000075605.1) HSP 1 Score: 516.538 bits (1329), Expect = 0.000e+0 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 Query: 64 MNHQTVQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYLW 840 MNHQTVQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYLW Sbjct: 1 MNHQTVQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYLW 259
BLAST of ARMC1 vs. Planmine SMEST
Match: SMESG000075605.1 (SMESG000075605.1) HSP 1 Score: 492.656 bits (1267), Expect = 1.411e-177 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1 Query: 97 MSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYLW 840 MSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYLW Sbjct: 1 MSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIFHNLIVNENNKQFLREFIGIKQQLECLESRYLSGTVIHMSASKLKNKLYKASVKRFTSVIKKEPKIKDSFKIKNSRNFIIELNGLTDMETVEEIKNNLINLEGVMSITFQLKIKRVIVKVNSSVSEQDILEAISDVSENIIGEVISSYKNFNDTTIKNESIISIPDYLPEPSSNVAKSVEVPVVSTLSIRSGFGSLLNRFSQAFTDYLW 248 The following BLAST results are available for this feature:
BLAST of ARMC1 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 3
BLAST of ARMC1 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of ARMC1 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of ARMC1 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 3
BLAST of ARMC1 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 4
BLAST of ARMC1 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 1
BLAST of ARMC1 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 5
BLAST of ARMC1 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 5
BLAST of ARMC1 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 3
BLAST of ARMC1 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of ARMC1 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of ARMC1 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of ARMC1 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 4
BLAST of ARMC1 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 2
Analyses
This transcript is derived from or has results from the following analyses Cross References
External references for this transcript
Sequences
The following sequences are available for this feature:
transcript sequence >SMED30028549 ID=SMED30028549|Name=ARMC1|organism=Schmidtea mediterranea sexual|type=transcript|length=1065bpback to top protein sequence of SMED30028549-orf-1 >SMED30028549-orf-1 ID=SMED30028549-orf-1|Name=SMED30028549-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=260bp MNHQTVQDLKIMSLNPLSARLLGQDFTCIGGLILLLSSDQEKVILDILEIback to top Aliases
The feature 'ARMC1' has the following synonyms
Annotated Terms
The following terms have been associated with this transcript:
InterPro
Analysis Name: Schmidtea mediteranean smed_20140614 Interproscan
Date Performed: 2020-05-01
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