SMED30028490

Overview
NameSMED30028490
Smed IDSMED30028490
Length (bp)1959
Neoblast Clusters

Zeng et. al., 2018



▻ Overview

▻ Neoblast Population

▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

 

Overview

 

Single cell RNA-seq of pluripotent neoblasts and its early progenies


We isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.

We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)



Explore this single cell expression dataset with our NB Cluster Shiny App



 

Neoblast Population

 

t-SNE plot shows two-dimensional representation of global gene expression relationships among all neoblasts (n = 7,088 after filter). Cluster identity was assigned based on the top 10 marker genes of each cluster (Table S2), followed by inspection of RNA in situ hybridization patterns. Neoblast groups, Nb.


Expression of SMED30028490 (SMED30028490) t-SNE clustered cells

Violin plots show distribution of expression levels for SMED30028490 (SMED30028490) in cells (dots) of each of the 12 neoblast clusters.

 

back to top

 

Sub-lethal Irradiated Surviving X1 and X2 Cell Population

 

t-SNE plot of surviving X1 and X2 cells (n = 1,039 after QC filter) after sub-lethal irradiation. Colors indicate unbiased cell classification via graph-based clustering. SL, sub-lethal irradiated cell groups.

Expression of SMED30028490 (SMED30028490) in the t-SNE clustered sub-lethally irradiated X1 and X2 cells.

Violin plots show distribution of expression levels for SMED30028490 (SMED30028490) in cells (dots) of each of the 10 clusters of sub-leathally irradiated X1 and X2 cells.

 

back to top

 

Embryonic Expression

Davies et. al., 2017

Hover the mouse over a column in the graph to view average RPKM values per sample.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult.
For further information about sample preparation and analysis for the single animal RNA-Seq experiment, please refer to the Materials and Methods

 

back to top
Anatomical Expression

PAGE et. al., 2020



SMED30028490

has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGE



PAGE Curations: 1

  
Expressed InReference TranscriptGene ModelsPublished TranscriptTranscriptomePublicationSpecimenLifecycleEvidence
parenchymaSMED30028490 dd_Smed_v4_22239_0_1dd_Smed_v4PMID:29674431
Fincher et al., 2018		FACS sorted cell population asexual adult single-cell RNA-sequencing evidence
Note: Hover over icons to view figure legend
Homology
[Close]
BLAST of SMED30028490 vs. TrEMBL
Match: A0A355ABF2 (Uncharacterized protein OS=Flavobacteriaceae bacterium OX=1871037 GN=DDZ39_05755 PE=4 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 3.938e-97
Identity = 194/530 (36.60%), Postives = 314/530 (59.25%), Query Frame = -2 
Query:    3 RNRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGELKISSKIRLKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTGKLQTHPFCNMRQTSCQTGESILVYEVKTNRCNLVHLKTMSFNEIVGEQLREGS--ENLNAKVRANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNYKGIYVSTKNIEEAQIRIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISLPDHKGVRTPERLELTKLEYLINFTSLNKLAQIGLYSQDNVEEARINLLFPSKSERVITEVIDTILSEGEGKENYDYLLC----QITIKSHVQHDENDLR*IHVYRTSLCRYNFXXXXXXXXXXXILTTRELYIISGWSWKLII 1574
            R R I +CG  SH+++I+  ++   ++I   NC  AF+  E++++ K+ LKA     ++E II+   +  +G C G  Y   G+ I + +V+E Y   +K+ E AFD DT ++ +  +C+ +   C  G++ ++Y+++   CNLV LKT++F+ I G+        + LN++ +       T + +  TPVVLI+    D +R +RK+ V KCGQ+ Y TNY  I VST  ++EA I+I   +  L  YFNNK DYL+H+    + ++Y EMI+NDCKLN+EILR +MA+ +TNPN+ AP++    GVF+R+ GE L ++KCK++ V+I     CT+ELPV    K  ++EP+TR+LL    K K +KC+ L SP Y+L+ ++WI  P    +  P+R +LT L   + F+ L  L + GLY +  +E+AR  LL+P   +R++TE+++T L +G  + NY+ LL     +   K+ ++               L    +++I +K  I Q+ +T ELY I G+SWKLI+
Sbjct:  449 RRRSIRWCGHHSHSAIIKQPSMIEYLNIGHRNCEDAFRLKEIRLADKLILKAKPGILIQEDIIKVGSIAFDGTCEGGEYWYQGKKIKQALVIETYQITIKKSEVAFDPDTNEMMSRSYCSAKSNFCFDGKTSIIYDIRKQECNLVFLKTVNFDVIRGKIFDNNLFIDKLNSRPKKIYRTEKT-INSHITPVVLIANKTSDAIRLVRKDQVVKCGQSVYLTNYDRIVVSTVRVKEAIIKISKKEINLAVYFNNKADYLYHHQLRQIEDLYREMIINDCKLNREILRTKMALIVTNPNIAAPVIPLGKGVFSRVLGEVLQTFKCKQVEVKINISSDCTHELPVIYKNKFMYLEPVTRLLLPDVIKVKKIKCSPLFSPAYKLSDNTWIVTPSLTPIAPPKRFQLTNLRNAVKFSRLKDLMKSGLYDKKAMEDARKYLLYPQVRDRILTEIVETSLGDG-NRPNYELLLSPNHFEKAAKNVMKKVWGRFLIFGQAIAGLMGIYYVVIFLKTFIEQVTSTYELYKIMGFSWKLIL 976

HSP 2 Score: 50.8322 bits (120), Expect = 3.938e-97
Identity = 23/68 (33.82%), Postives = 42/68 (61.76%), Query Frame = -1 
Query: 1570 PMKI-PFIMFMILTLCGIVTQTTSLVAYDCSQTELGKIYSVVDMTECPDAYPMKLKIENEKKYYVYQE 1770
            P+K+  F++ M+L     + +  ++ AYDC   +LG  +S++D  ECP+AYP + +    + Y++YQE
Sbjct:  369 PLKVFNFVILMLLLFS--LPKGKAIKAYDCDNAKLGTQFSLLDAEECPEAYPNQFEKRFNRIYHIYQE 434
[Close]
BLAST of SMED30028490 vs. TrEMBL
Match: A0A232EE88 (Uncharacterized protein OS=Trichomalopsis sarcophagae OX=543379 GN=TSAR_013300 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.917e-26
Identity = 109/490 (22.24%), Postives = 216/490 (44.08%), Query Frame = -2 
Query:  156 NRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGELKISSKIRLKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTGKL--QTHPFCNMRQTSC--QTGESILVYEVKTNRCNLVHLKTMSFNEIV----GEQLREGSENL-NAKVR-ANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNYKGIYVS-----TKNIEEAQIRIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISL-PDHKGVRTPERLELTKLEYLINFTSLNKLAQIGLYSQDNVEEARINLLFPSKSERVITEVIDTILSEGEGKENYDY--LLCQITIKSHVQ 1571
            +R IF CG +SH S ++       + I+ + C    + G  +          +N   R ++     +  +G+C G ++K +    + VVV  +   ++ ++  + + D  +L  Q+   C+ + T C    G+      + T+ CN        +N+ V    G+ ++ G+  L N  V  AN T +I                       ++   VN CG   + T++  ++++     T    E  + +H  D  +  YFN K+ +L H+ ++   ++Y +M+LN C+L +++++  +    T P++ A  ++ + G  A   GE  +   C EI  ++ + E+C  E+PV+   +  F++P +RI            CN +L  LY L  +SW+   P     R P+ LE   +    ++  +  L   G+Y+ D+++    +  FP++    I EV   +  +     + D+  L+ Q ++K  VQ
Sbjct:   78 DRHIFVCGMFSHQSEVKTGEQIFFISISRDICYDIHRFGSFEYEKIQIHDIRINSTTRVSMTVAGSLSEDGKCSGTTFKTDQHDYEDVVVTAKLEIDVSDYMASANRDKDELILQSGTRCSYKDTKCTDADGKRSFWEYIPTSPCN--------YNQYVLLFDGKGVKVGNNTLDNPNVYFANTTEKIQ-------------------FGLMKTGEVNLCGYQLFSTDHPKLFITEYPRGTGIAAEKSLDVH--DILITAYFNTKIAFLAHHMKTQFSDMYNDMLLNRCRLQRQVIQNSLMHMYTKPDVAALTIMRKPGYMAVPVGEVAHLVVCDEILCKVRQVEECFQEIPVTCRNESYFLKPFSRI---MTKTGTARTCNNILPALY-LIEESWLKFSPGPNEGRIPQILEPQTVPTW-HYQDIKGLIDGGIYTADDLDRLHKHSTFPAERHAYIEEVARRLSDKSAYSSSIDFGNLVDQKSLKKIVQ 533
[Close]
BLAST of SMED30028490 vs. TrEMBL
Match: A0A151J7N2 (Uncharacterized protein OS=Trachymyrmex cornetzi OX=471704 GN=ALC57_08270 PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.923e-25
Identity = 111/454 (24.45%), Postives = 196/454 (43.17%), Query Frame = -2 
Query:  249 NRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTG--ELKISSKIR-LKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTG--KLQTHPFCNMRQTSCQT--GESILVYEVKTNRCNLVHLKTMSFNEIVGEQLREGSENLNAKVRANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNY-KGIYVSTKNIEE--AQIRIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISL---PDHKGVRTPERLELTKLEYLINFTSLNKLAQIGLYSQDNVEEARINLLFPSKSERVI 1571
            NRFI+YCG  SH S +R       ++I  E C     TG     I + I  LK N    +R TI       ++G C G  Y       D V+V       L  ++ + + +T   +L++   C     +C    G       + T+ C   H           + L EG  N           R+         +V   +  D      R      CG T  +T + K + + TK  E    + R+ + +  +  Y N+K  Y+  + +S M  +Y +++   C L +++L+  +++AI +P+  A  ++   G  A I GE ++  KC  + V+I   ++C +ELPV    +  F+ P T I          + CNR++ P++ L +D W  +   P+H    T  +  +TK  +  ++T+   LA  G+YS  ++E  R +++FP++   ++
Sbjct:   80 NRFIYYCGMHSHLSTVRNAQAEYILEITAEQCKKMHLTGIFSFDIHNYIYGLKVN-QTTMRPTIFAGSA-NSDGRCSGAQYSDLYGAWDNVIVQGTTTITLTSYQTSINLETNQIRLKSGTICPYTDATCMDIDGGHTFWKTLPTDHCKFNHY----------DVLYEGYAN-----------RMVDTFFEHPQIVYSLSTQDITFALTRTGEEPVCGYTLIKTEHPKLLILETKKGESFTTKRRLSTENLDIFTYINSKFVYVEKHIRSQMNLLYRDVLKQRCTLEQQVLKGALSLAINSPDEFAYQIMKGPGYMAVISGEVVHIIKCTPVDVKIQHVKECYSELPVQKGNETYFLSPRTHI---LIKTGTQISCNRVIPPMFFL-NDGWYRMTPTPEHSLPPTIMK-PMTKPTW--HYTNPGSLAASGIYSDTDLENLRDHIMFPAEKGGIL 503

HSP 2 Score: 29.261 bits (64), Expect = 6.923e-25
Identity = 13/42 (30.95%), Postives = 21/42 (50.00%), Query Frame = -1 
Query: 1633 FIMFMILTLCGIVTQTTSLVAYDCSQTELG-KIYSVVDMTEC 1755
             ++F +LT    + Q   +V YDC  T L     S++D+  C
Sbjct:    4 LLLFAVLTWTLCIPQVNGIVGYDCGSTHLNVTTLSLLDVESC 45
[Close]
BLAST of SMED30028490 vs. TrEMBL
Match: A0A151K0D4 (Uncharacterized protein OS=Trachymyrmex septentrionalis OX=34720 GN=ALC56_02499 PE=4 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.312e-23
Identity = 105/447 (23.49%), Postives = 187/447 (41.83%), Query Frame = -2 
Query:  264 NRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGELKISSKIRLKA-NLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTG--KLQTHPFCNMRQTSCQT--GESILVYEVKTNRCNLVHLKTMSFNEIVGEQLREGSENLNAKVRANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNY-KGIYVSTKNIEEAQI--RIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISL---PDHKGVRTPERLELTKLEYLINFTSLNKLAQIGLYSQDNVEEARINLLFPSK 1571
            NR I+YCG  SH S +        +++  + C     TG   I +   +    +N              ++G C G  Y       D VVV       L  ++ A + +T   +L++   C    T+C    G       + T+ C   H           + L EG  N           R+         +V   +  D      R      CG T  +T + K + + TK  E   +  R+ + +  +  Y N+K  Y+  + +S M  +Y +++   C L +++L+  +++AI +P+  A  ++   G  A I GE ++  KC  + V+I   ++C  ELPV  N +  F+ P T I          + CNR+  P++ L +D W  +   P+H    T  +  +TK  +  ++T+   LA  G+YS  ++E  R +++FP++
Sbjct:   80 NRLIYYCGMHSHISTVMNAQAEYILEVTADQCKRMHLTGTFSIDTNNHIYGLKINQTTMRPTTFAGSANSDGRCSGAQYSDPYGTWDNVVVQGTTTITLLSYQAAINLETNQIRLKSGTTCLYTDTTCMDIDGGHTFWKTLPTDHCKFNHY----------DVLYEGYAN-----------RMVDAFYEHPQIVYSLSTQDVTFALTRTGEELVCGYTLIKTEHPKLLILETKKGESFAVKHRLSTENLDIFTYINSKFIYVEKHIRSQMNLLYNDVLKQRCNLEQQVLKGALSLAIDSPDEFAYQIMKGPGYMAVISGEVVHIIKCTPVDVKIQHVKECYLELPVQKNNETYFLSPRTHI---LIKTGTQISCNRITPPMFFL-NDGWYRMTPTPEHSLPPTIMK-PMTKPTW--HYTNPGSLAASGIYSDADLENLRDHIMFPAE 498

HSP 2 Score: 25.0238 bits (53), Expect = 3.312e-23
Identity = 11/41 (26.83%), Postives = 22/41 (53.66%), Query Frame = -1 
Query: 1633 IMFMILTLCGIVTQTTSLVAYDCSQTELG-KIYSVVDMTEC 1752
            ++F++LT    +     +V YDC  T+L     S++++  C
Sbjct:    5 LLFIVLTWNLSIPHVNGIVGYDCGSTQLNITTLSLLNVESC 45
[Close]
BLAST of SMED30028490 vs. TrEMBL
Match: A0A0L7QJ86 (Uncharacterized protein OS=Habropoda laboriosa OX=597456 GN=WH47_08632 PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.478e-23
Identity = 103/441 (23.36%), Postives = 190/441 (43.08%), Query Frame = -2 
Query:  270 NRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGELKISS-KIRLKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTGKL--QTHPFCNMRQTSCQTGESILVYEVKTNRCNLVHLKTMSFNEIVGEQLREGSENLNAKVRANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNYKGIYV---STKNIEEAQIRIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISLP-DHKGVRTPERLELTKLEYLINFTSLNKLAQIGLYSQDNVEEARINLLFP 1571
            +R I+YCG +SHTS+++       ++I  E C    +TG+++ S+  I     +N     ++     +  +G C G  Y       + VVV       L+ F       T  L   +   C + + SC+  E    +   T   N        F+    + L EG  N           +++P  +   P +   T  D        + +  CG    +T +  +++   S +N  +++ +I   +  L  Y N+K  Y+  + ++ +  +Y  +I   C L +++LR  +A+A   P+ +A  ++ + G  A   GE ++  KC  +   I   + C NELPV+V     FM+P  RI           +CN LL  +Y+L  + +   P   + +  P+   LT   +  ++ +   LA  G+Y+Q  ++E R ++LFP
Sbjct:   77 DRTIYYCGMYSHTSVVQGGQREYLMEITSELCNQLHRTGQIQFSANDIITGLRINTTSTRSLTLAGTITLDGRCTGAQYSDPFGTWNNVVVQASVTITLRSFYAPIKLGTSHLILPSGRHCLVTEESCEDAEGEATFWTATVEDNC------HFDRY--DVLYEGMAN-----------KVSPPDSTSGPTMFSLTSQDTTFALTTTSTLPLCGYFLLKTEHPKLFILATSKENTFKSKSKIEVNNLDLLTYVNSKFVYVERHIKTQLTELYANIINQRCALEQQVLRNALALANIQPDELALAIMKQPGYMAVPAGEVVHLVKCVPVECTIRHTQFCYNELPVTVRNTSYFMKPKNRI---LVRTATPKECNELLPTMYQLHGNWYKMNPKPMESLPPPDIQPLTTPTW--HYKNPANLATSGIYTQQQIDELRDHILFP 493
[Close]
BLAST of SMED30028490 vs. Planmine SMEST
Match: SMESG000080881.1 (SMESG000080881.1)

HSP 1 Score: 676.011 bits (1743), Expect = 0.000e+0
Identity = 315/456 (69.08%), Postives = 391/456 (85.75%), Query Frame = -2 
Query:  207 RNRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGELKISSKIRLKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTGKLQTHPFCNMRQTSCQTGESILVYEVKTNRCNLVHLKTMSFNEIVGEQLREGSENLNAKVRANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNYKGIYVSTKNIEEAQIRIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISLPDHKGVRTPERLELTKLEYLINFTSLNKLAQIGLYSQDNVEEARINLLFPSKSERVITEVIDTILSEGEGK 1574
            R  F+F+CGKWSHTSLI+M+AIPRPV++ PENC+AAFQT ELKI+ +I+LKA +N  +RET++ + V++ +G C GE YK+NG+II + VV+EEYLT+L+EFEG FDD TGKLQTHPFCNMRQ++CQTGESILV++VKT+ CNL HLKTM+F E+ GEQ RE  +N N   ++N T+R TP+ TRKT  VL+STLP DGMRFI+K   NKCGQ  Y TNYKG+YVS   ++EA+ +IH+ D KL +YFNNK+DYL+H+SQ+IM NIY EMILNDCKLNKEILR RMAMAITNPNLVAPM+ISENGVFARIFGEALYSYKCK ++V+I+KYE+CTNELPVS+NGK+RFMEPITRILLD  TKPK L+CNRLL+PLYRL  DSWI+LPD++GVRTP++LELT LEYL+NFTSLN++AQ+G Y+ +++EEA+ NLLFPSK ERVI+E+IDTIL  GE +
Sbjct: 2510 RTTFVFFCGKWSHTSLIKMHAIPRPVEVMPENCLAAFQTEELKINPEIKLKAKVNQRIRETVVVKGVIQQDGTCEGEPYKVNGKIIKQSVVIEEYLTKLREFEGVFDDKTGKLQTHPFCNMRQSNCQTGESILVFDVKTDICNLAHLKTMTFKELSGEQFRESLDNFNINYKSNGTIRSTPVWTRKTTPVLMSTLPTDGMRFIKKEATNKCGQMVYATNYKGVYVSKMMVQEAKTKIHTNDIKLTHYFNNKIDYLYHFSQNIMENIYREMILNDCKLNKEILRNRMAMAITNPNLVAPMLISENGVFARIFGEALYSYKCKAVTVKIMKYEKCTNELPVSINGKMRFMEPITRILLDEHTKPKFLQCNRLLAPLYRLAQDSWIALPDYRGVRTPDKLELTNLEYLVNFTSLNRMAQMGFYASEDIEEAQRNLLFPSKKERVISEMIDTILPNGEAR 2965

HSP 2 Score: 129.798 bits (325), Expect = 0.000e+0
Identity = 66/140 (47.14%), Postives = 88/140 (62.86%), Query Frame = -1 
Query: 1567 LEIGAYSYLNNDK-EEIIEAATKVLNKHVGSWISENGGWKKLTKN--------QPKPTEEINEKCGIAMRRKPMKIPFIMFMILTLCGIVTQTTSLVAYDCSQTELGKIYSVVDMTECPDAYPMKLKIENEKKYYVYQES 1959
            LEIGA++    D  E +I+ A +  N++   W+  NGGWKKL  +        +  P + +N K    +R+K M  P+ + M+   C I TQ T + AYDCSQTE+GKIYSVVDM ECP+ YP KLK+EN+ KYYVYQES
Sbjct: 2358 LEIGAHAIAETDNLENLIDVAARTSNEYFMKWVKNNGGWKKLNNDLTVNEGDEKKLPYKPLNGKDSPKLRKK-MIFPWAIVMLFICCTITTQATGMTAYDCSQTEMGKIYSVVDMAECPEVYPKKLKVENDVKYYVYQES 2496
[Close]
BLAST of SMED30028490 vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1)

HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0
Identity = 307/462 (66.45%), Postives = 380/462 (82.25%), Query Frame = -2 
Query:  207 RSIMFIRNRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGELKISSKIRLKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTGKLQTHPFCNMRQTSCQTGESILVYEVKTNRCNLVHLKTMSFNEIVGEQLREGSENLNAKVRANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNYKGIYVSTKNIEEAQIRIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISLPDHKGVRTPERLELTKLEYLINFTSLNKLAQIGLYSQDNVEEARINLLFPSKSERVITEVIDTILSEGEGK 1592
            R  +  R  F+F+CGKWSHTSLI+M+AI R +++ PENC+AAFQT ELKI+ +I+LKA +NH +RET++ + V+  +G C GE Y          +V+EEYLTEL+EFEG FDD+TGKLQTHPFCNMRQ++CQTGESILV++VKTN CNL HLKTM+F E+ GEQ RE  +N N   ++N T+R TP+ TRKT  VL+STLP D MRFI+K   NKCGQ  Y TNY+G+YVS     EA+ +IH+ D KL +YFNNK+DYL+H+SQ+IM NIY EMILNDCKLNKEILR RMAMAITNPNLVAPM+ISENGVFARIFGEA YSYKCK ++V+I+KYE+CTNELPVS+NGK+RFMEPITRILLD  TK K+L+CNRLL+PLYRL  DSWI+LPD++GVRTP++LELT LEYL+NFTSLNK+AQ+G Y+ +++EEA+ NLLFPSK ERVI+E+IDTIL  GE +
Sbjct: 1051 RECIVKRTTFVFFCGKWSHTSLIKMHAISRQLEVMPENCLAAFQTEELKINPEIKLKAKINHRIRETVVVKGVITQDGTCEGEPY----------MVIEEYLTELREFEGVFDDETGKLQTHPFCNMRQSNCQTGESILVFDVKTNVCNLAHLKTMTFKELSGEQFRESPDNFNINYKSNGTIRSTPVWTRKTTPVLMSTLPTDSMRFIKKEATNKCGQMVYATNYRGVYVSKMMGHEAKTKIHTNDIKLTHYFNNKIDYLYHFSQNIMENIYREMILNDCKLNKEILRSRMAMAITNPNLVAPMLISENGVFARIFGEAFYSYKCKAVTVKIMKYEKCTNELPVSINGKMRFMEPITRILLDEHTKQKILQCNRLLAPLYRLAQDSWIALPDYRGVRTPDKLELTNLEYLVNFTSLNKMAQMGFYASEDIEEAQRNLLFPSKKERVISEMIDTILPNGEAR 1502

HSP 2 Score: 90.8929 bits (224), Expect = 1.751e-18
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = -1 
Query: 1567 LEIGAYSYLNNDK-EEIIEAATKVLNKHVGSWISENGGWKKLTKNQPKPTEEINEKCGIAMRRKPMKIPFIMFMILTLCGIVTQTTSLVAYDCSQTELGKIYSVVDMTECPDAYPMKLKIENEKKYYVYQES 1959
            LEIG ++    D  E +I+ A ++LN++   W+ +NGG                                                 + AYDCSQTE+GKIYSVVDM ECPDAYP KLK+EN+ KYYVYQES
Sbjct:  961 LEIGPHAIAETDNLENLIDVAARILNEYFIEWVKKNGG-------------------------------------------------MTAYDCSQTEMGKIYSVVDMAECPDAYPKKLKVENDVKYYVYQES 1043
[Close]
BLAST of SMED30028490 vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1)

HSP 1 Score: 650.203 bits (1676), Expect = 0.000e+0
Identity = 307/462 (66.45%), Postives = 380/462 (82.25%), Query Frame = -2 
Query:  207 RSIMFIRNRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGELKISSKIRLKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTGKLQTHPFCNMRQTSCQTGESILVYEVKTNRCNLVHLKTMSFNEIVGEQLREGSENLNAKVRANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNYKGIYVSTKNIEEAQIRIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISLPDHKGVRTPERLELTKLEYLINFTSLNKLAQIGLYSQDNVEEARINLLFPSKSERVITEVIDTILSEGEGK 1592
            R  +  R  F+F+CGKWSHTSLI+M+AI R +++ PENC+AAFQT ELKI+ +I+LKA +NH +RET++ + V+  +G C GE Y          +V+EEYLTEL+EFEG FDD+TGKLQTHPFCNMRQ++CQTGESILV++VKTN CNL HLKTM+F E+ GEQ RE  +N N   ++N T+R TP+ TRKT  VL+STLP D MRFI+K   NKCGQ  Y TNY+G+YVS     EA+ +IH+ D KL +YFNNK+DYL+H+SQ+IM NIY EMILNDCKLNKEILR RMAMAITNPNLVAPM+ISENGVFARIFGEA YSYKCK ++V+I+KYE+CTNELPVS+NGK+RFMEPITRILLD  TK K+L+CNRLL+PLYRL  DSWI+LPD++GVRTP++LELT LEYL+NFTSLNK+AQ+G Y+ +++EEA+ NLLFPSK ERVI+E+IDTIL  GE +
Sbjct: 1051 RECIVKRTTFVFFCGKWSHTSLIKMHAISRQLEVMPENCLAAFQTEELKINPEIKLKAKINHRIRETVVVKGVITQDGTCEGEPY----------MVIEEYLTELREFEGVFDDETGKLQTHPFCNMRQSNCQTGESILVFDVKTNVCNLAHLKTMTFKELSGEQFRESPDNFNINYKSNGTIRSTPVWTRKTTPVLMSTLPTDSMRFIKKEATNKCGQMVYATNYRGVYVSKMMGHEAKTKIHTNDIKLTHYFNNKIDYLYHFSQNIMENIYREMILNDCKLNKEILRSRMAMAITNPNLVAPMLISENGVFARIFGEAFYSYKCKAVTVKIMKYEKCTNELPVSINGKMRFMEPITRILLDEHTKQKILQCNRLLAPLYRLAQDSWIALPDYRGVRTPDKLELTNLEYLVNFTSLNKMAQMGFYASEDIEEAQRNLLFPSKKERVISEMIDTILPNGEAR 1502

HSP 2 Score: 90.8929 bits (224), Expect = 1.709e-18
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = -1 
Query: 1567 LEIGAYSYLNNDK-EEIIEAATKVLNKHVGSWISENGGWKKLTKNQPKPTEEINEKCGIAMRRKPMKIPFIMFMILTLCGIVTQTTSLVAYDCSQTELGKIYSVVDMTECPDAYPMKLKIENEKKYYVYQES 1959
            LEIG ++    D  E +I+ A ++LN++   W+ +NGG                                                 + AYDCSQTE+GKIYSVVDM ECPDAYP KLK+EN+ KYYVYQES
Sbjct:  961 LEIGPHAIAETDNLENLIDVAARILNEYFIEWVKKNGG-------------------------------------------------MTAYDCSQTEMGKIYSVVDMAECPDAYPKKLKVENDVKYYVYQES 1043
[Close]
BLAST of SMED30028490 vs. Planmine SMEST
Match: SMESG000057446.1 (SMESG000057446.1)

HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0
Identity = 307/462 (66.45%), Postives = 380/462 (82.25%), Query Frame = -2 
Query:  207 RSIMFIRNRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGELKISSKIRLKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTGKLQTHPFCNMRQTSCQTGESILVYEVKTNRCNLVHLKTMSFNEIVGEQLREGSENLNAKVRANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNYKGIYVSTKNIEEAQIRIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISLPDHKGVRTPERLELTKLEYLINFTSLNKLAQIGLYSQDNVEEARINLLFPSKSERVITEVIDTILSEGEGK 1592
            R  +  R  F+F+CGKWSHTSLI+M+AI R +++ PENC+AAFQT ELKI+ +I+LKA +NH +RET++ + V+  +G C GE Y          +V+EEYLTEL+EFEG FDD+TGKLQTHPFCNMRQ++CQTGESILV++VKTN CNL HLKTM+F E+ GEQ RE  +N N   ++N T+R TP+ TRKT  VL+STLP D MRFI+K   NKCGQ  Y TNY+G+YVS     EA+ +IH+ D KL +YFNNK+DYL+H+SQ+IM NIY EMILNDCKLNKEILR RMAMAITNPNLVAPM+ISENGVFARIFGEA YSYKCK ++V+I+KYE+CTNELPVS+NGK+RFMEPITRILLD  TK K+L+CNRLL+PLYRL  DSWI+LPD++GVRTP++LELT LEYL+NFTSLNK+AQ+G Y+ +++EEA+ NLLFPSK ERVI+E+IDTIL  GE +
Sbjct: 1051 RECIVKRTTFVFFCGKWSHTSLIKMHAISRQLEVMPENCLAAFQTEELKINPEIKLKAKINHRIRETVVVKGVITQDGTCEGEPY----------MVIEEYLTELREFEGVFDDETGKLQTHPFCNMRQSNCQTGESILVFDVKTNVCNLAHLKTMTFKELSGEQFRESPDNFNINYKSNGTIRSTPVWTRKTTPVLMSTLPTDSMRFIKKEATNKCGQMVYATNYRGVYVSKMMGHEAKTKIHTNDIKLTHYFNNKIDYLYHFSQNIMENIYREMILNDCKLNKEILRSRMAMAITNPNLVAPMLISENGVFARIFGEAFYSYKCKAVTVKIMKYEKCTNELPVSINGKMRFMEPITRILLDEHTKQKILQCNRLLAPLYRLAQDSWIALPDYRGVRTPDKLELTNLEYLVNFTSLNKMAQMGFYASEDIEEAQRNLLFPSKKERVISEMIDTILPNGEAR 1502

HSP 2 Score: 90.8929 bits (224), Expect = 1.676e-18
Identity = 51/132 (38.64%), Postives = 65/132 (49.24%), Query Frame = -1 
Query: 1567 LEIGAYSYLNNDK-EEIIEAATKVLNKHVGSWISENGGWKKLTKNQPKPTEEINEKCGIAMRRKPMKIPFIMFMILTLCGIVTQTTSLVAYDCSQTELGKIYSVVDMTECPDAYPMKLKIENEKKYYVYQES 1959
            LEIG ++    D  E +I+ A ++LN++   W+ +NGG                                                 + AYDCSQTE+GKIYSVVDM ECPDAYP KLK+EN+ KYYVYQES
Sbjct:  961 LEIGPHAIAETDNLENLIDVAARILNEYFIEWVKKNGG-------------------------------------------------MTAYDCSQTEMGKIYSVVDMAECPDAYPKKLKVENDVKYYVYQES 1043
[Close]
BLAST of SMED30028490 vs. Planmine SMEST
Match: SMESG000004411.1 (SMESG000004411.1)

HSP 1 Score: 580.096 bits (1494), Expect = 0.000e+0
Identity = 306/397 (77.08%), Postives = 319/397 (80.35%), Query Frame = -2 
Query:  384 RNRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGELKISSKIRLKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVMEEYLTELKEFEGAFDDDTGKLQTHPFCNMRQTSCQTGESILVYEVKTNRCNLVHLKTMSFNEIVGEQLREGSENLNAKVRANVTLRITPLITRKTPVVLISTLPDDGMRFIRKNIVNKCGQTAYETNYKGIYVSTKNIEEAQIRIHSMDFKLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITNPNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKLRFMEPITRIXXXXXXXXXXXKCNRLLSPLYRLTSDSWISLPDHKGVRTPERL 1574
            R  FI YCGK              PVDINPENCVAAFQTGELKISS+IRLKA LNHAVRETIIER VMKA                          +ELKEFEGAFDDDTGKLQTHPFCNMRQTSCQTGE I+VYEVKTN+CNL+HLKTMSFNEIVG+QLREGSENL  +               K+ +VLISTLP DGMRFIRKNIVNKCGQT YETN+KGIYVSTKNIEEAQIRIHSMD KL NYFNNKMDYLFHYSQ IMGNIYGEMIL DCKLNKEIL+ RMAMAITN NLVAPM+ISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGK R MEPITRILLD DTKPKLLKCNRLL+ LYRLTSDSWI LPDHKGVR PERL
Sbjct:  734 RTSFICYCGK--------------PVDINPENCVAAFQTGELKISSEIRLKAKLNHAVRETIIERGVMKA--------------------------SELKEFEGAFDDDTGKLQTHPFCNMRQTSCQTGELIIVYEVKTNQCNLLHLKTMSFNEIVGDQLREGSENLKPE--------------SKSELVLISTLPYDGMRFIRKNIVNKCGQTEYETNHKGIYVSTKNIEEAQIRIHSMDIKLTNYFNNKMDYLFHYSQIIMGNIYGEMILYDCKLNKEILQNRMAMAITNLNLVAPMLISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVNGKSRLMEPITRILLDEDTKPKLLKCNRLLAQLYRLTSDSWIFLPDHKGVRIPERL 1076

HSP 2 Score: 219.935 bits (559), Expect = 0.000e+0
Identity = 113/132 (85.61%), Postives = 114/132 (86.36%), Query Frame = -1 
Query: 1567 LEIGAYSYLNNDKEE-IIEAATKVLNKHVGSWISENGGWKKLTKNQPKPTEEINEKCGIAMRRKPMKIPFIMFMILTLCGIVTQTTSLVAYDCSQTELGKIYSVVDMTECPDAYPMKLKIENEKKYYVYQES 1959
            LEIGAY  LNNDKEE I+EAATKVLNKHVGSWISENG             EEINEKCGIAMRRKPMKI FIMFMILTLCGIVTQTTSLVAYDCSQTELGKIYSVVDMTECPDA PMKLKIENEKKYYVYQES
Sbjct:  602 LEIGAYLCLNNDKEEEILEAATKVLNKHVGSWISENG-------------EEINEKCGIAMRRKPMKILFIMFMILTLCGIVTQTTSLVAYDCSQTELGKIYSVVDMTECPDANPMKLKIENEKKYYVYQES 720
The following BLAST results are available for this feature:
BLAST of SMED30028490 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A355ABF23.938e-9736.60Uncharacterized protein OS=Flavobacteriaceae bacte... [more]
A0A232EE883.917e-2622.24Uncharacterized protein OS=Trichomalopsis sarcopha... [more]
A0A151J7N26.923e-2524.45Uncharacterized protein OS=Trachymyrmex cornetzi O... [more]
A0A151K0D43.312e-2323.49Uncharacterized protein OS=Trachymyrmex septentrio... [more]
A0A0L7QJ863.478e-2323.36Uncharacterized protein OS=Habropoda laboriosa OX=... [more]
back to top
BLAST of SMED30028490 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of SMED30028490 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST)
Total hits: 5
Match NameE-valueIdentityDescription
SMESG000080881.10.000e+069.08SMESG000080881.1[more]
SMESG000057446.11.751e-1866.45SMESG000057446.1[more]
SMESG000057446.11.709e-1866.45SMESG000057446.1[more]
SMESG000057446.11.676e-1866.45SMESG000057446.1[more]
SMESG000004411.10.000e+077.08SMESG000004411.1[more]
back to top
Sequences
The following sequences are available for this feature:

transcript sequence

>SMED30028490 ID=SMED30028490|Name=SMED30028490|organism=Schmidtea mediterranea sexual|type=transcript|length=1959bp
CCAATAATCAATTTCCATGACCATCCTGAAATAATATATAATTCTCGAGT
AGTCAATATTTGAGATATCATAACTTTGATCATAATAATAATAAAATTAT
ATCTGCACAAGCTTGTCCTATAAACATGAATTTACCTCAAATCGTTTTCA
TCGTGTTGTACGTGGCTTTTTATAGTGATCTGGCACAATAAATAATCATA
ATTTTCCTTTCCTTCACCTTCTGATAATATAGTATCAATCACCTCGGTAA
TTACCCTTTCACTTTTTGACGGAAATAACAAATTTATCCGTGCTTCTTCA
ACATTGTCTTGAGAATACAATCCAATTTGAGCTAGTTTATTTAATGATGT
AAAATTTATTAGATATTCAAGTTTTGTCAACTCTAATCTCTCGGGAGTTC
TCACCCCTTTATGATCTGGCAAGGATATCCATGAATCTGAAGTTAACCGA
TATAATGGTGACAATAACCTATTGCACTTTAATAACTTGGGTTTTGTATC
TTAATCTAGTAATATTCGAGTTATTGGCTCCATAAATCTCAATTTCCCAT
TGACACTTACAGGCAATTCATTTGTACACTGCTCGTATTTTATAATCTGA
ACAGAGATTTCTTTACATTTATAACTATACAATGCTTCGCCAAATATCCT
TGCAAATACACCATTTTCTGAAATAACCATTGGCGCCACTAGATTTGGAT
TTGTAATTGCCATAGCCATTCTTTTTCGGAGTATTTCTTTATTTAACTTG
CAATCATTTAATATCATTTCTCCATATATATTTCCCATGATACTCTGACT
ATAATGAAATAAATAATCCATTTTATTATTGAAATAATTCTTTAATTTGA
AATCCATGCTATGTATCCGAATTTGGGCTTCTTCAATGTTTTTCGTCGAT
ACATAAATTCCTTTATAATTGGTTTCATACGCTGTTTGGCCACATTTGTT
AACAATGTTTTTCCGAATGAATCTCATACCATCATCTGGTAATGTTGATA
TCAACACTACTGGAGTTTTTCTTGTTATCAAAGGAGTAATTCTAAGTGTC
ACATTCGCTCTTACTTTCGCGTTTAAATTTTCTGATCCTTCTCTCAATTG
TTCTCCAACAATTTCGTTAAAACTCATTGTTTTTAGATGTACTAAATTGC
ACCGATTTGTTTTCACTTCATACACAAGGATTGATTCTCCTGTTTGACAA
CTCGTTTGTCTCATGTTACAAAATGGATGAGTTTGTAACTTACCTGTGTC
ATCATCAAAAGCTCCCTCAAATTCTTTCAACTCTGTTAAATATTCTTCCA
TAACGACAACTTTATCGATAATTTCTCCATTCATTTTGTAAGATTCCCCT
ACACACTCACCATTAGCTTTCATTACTCTCCTTTCAATAATTGTTTCCCG
TACTGCGTGATTTAAGTTGGCTTTTAATCTGATTTTTGAGCTAATTTTAA
GTTCTCCTGTTTGAAATGCGGCTACACAATTTTCTGGATTTATATCAACT
GGTCTTGGAATTGCATACATCCTGATTAATGACGTATGACTCCACTTTCC
ACAATAAAATATGAAACGATTCCTGATAAACATAATACTTCTTTTCATTT
TCTATTTTCAGTTTCATCGGATACGCGTCGGGGCATTCTGTCATATCTAC
CACAGAATAAATCTTCCCCAATTCTGTTTGAGAGCAATCATATGCGACTA
ATGACGTAGTTTGGGTTACAATTCCACATAACGTCAATATCATAAACATT
ATAAACGGAATTTTCATTGGTTTTCTTCTCATTGCGATTCCACACTTTTC
ATTTATTTCTTCTGTTGGTTTAGGTTGGTTTTTTGTTAACTTTTTCCAAC
CTCCATTTTCACTTATCCAGCTACCAACATGTTTATTCAGAACCTTGGTT
GCCGCTTCAATTATCTCTTCTTTATCATTATTTAAATAGGAGTATGCTCC
TATTTCTAA
back to top

protein sequence of SMED30028490-orf-1

>SMED30028490-orf-1 ID=SMED30028490-orf-1|Name=SMED30028490-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=155bp
LEIGAYSYLNNDKEEIIEAATKVLNKHVGSWISENGGWKKLTKNQPKPTE
EINEKCGIAMRRKPMKIPFIMFMILTLCGIVTQTTSLVAYDCSQTELGKI
YSVVDMTECPDAYPMKLKIENEKKYYVYQESFHILLWKVESYVINQDVCN
SKTS*
back to top

protein sequence of SMED30028490-orf-2

>SMED30028490-orf-2 ID=SMED30028490-orf-2|Name=SMED30028490-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=366bp
MKRSIMFIRNRFIFYCGKWSHTSLIRMYAIPRPVDINPENCVAAFQTGEL
KISSKIRLKANLNHAVRETIIERRVMKANGECVGESYKMNGEIIDKVVVM
EEYLTELKEFEGAFDDDTGKLQTHPFCNMRQTSCQTGESILVYEVKTNRC
NLVHLKTMSFNEIVGEQLREGSENLNAKVRANVTLRITPLITRKTPVVLI
STLPDDGMRFIRKNIVNKCGQTAYETNYKGIYVSTKNIEEAQIRIHSMDF
KLKNYFNNKMDYLFHYSQSIMGNIYGEMILNDCKLNKEILRKRMAMAITN
PNLVAPMVISENGVFARIFGEALYSYKCKEISVQIIKYEQCTNELPVSVN
GKLRFMEPITRILLD*
back to top