SMED30028468
Overview
Neoblast Clusters
Zeng et. al., 2018▻ Overview▻ Neoblast Population▻ Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Overview
Single cell RNA-seq of pluripotent neoblasts and its early progeniesWe isolated X1 neoblasts cells enriched in high piwi-1 expression (Neoblast Population), and profiled ∼7,614 individual cells via scRNA-seq. Unsupervised analyses uncovered 12 distinct classes from 7,088 high-quality cells. We designated these classes Nb1 to Nb12 and ordered them based on high (Nb1) to low (Nb12) piwi-1 expression levels. We further defined groups of genes that best classified the cells parsed into 12 distinct cell clusters to generate a scaled expression heat map of discriminative gene sets for each cluster. Expression of each cluster’s gene signatures was validated using multiplex fluorescence in situ hybridization (FISH) co-stained with piwi-1 and largely confirmed the cell clusters revealed by scRNA-seq.We also tested sub-lethal irradiation exposure. To profile rare pluripotent stem cells (PSCs) and avoid interference from immediate progenitor cells, we determined a time point after sub-lethal irradiation (7 DPI) with minimal piwi-1+ cells, followed by isolation and single-cell RNA-seq of 1,200 individual cells derived from X1 (Piwi-1 high) and X2 (Piwi-1 low) cell populations (Sub-lethal Irradiated Surviving X1 and X2 Cell Population)Explore this single cell expression dataset with our NB Cluster Shiny App
Neoblast Population
Sub-lethal Irradiated Surviving X1 and X2 Cell Population
Embryonic Expression
Davies et. al., 2017
Hover the mouse over a column in the graph to view average RPKM values per sample. Embryonic Stages: Y: yolk. S2-S8: Stages 2-8. C4: asexual adult. SX: virgin, sexually mature adult. back to top Anatomical Expression
PAGE et. al., 2020SMED30028468 has been reported as being expressed in these anatomical structures and/or regions. Read more about PAGEPAGE Curations: 4
Homology
BLAST of SMED30028468 vs. Planmine SMEST
Match: SMESG000051017.1 (SMESG000051017.1) HSP 1 Score: 214.542 bits (545), Expect = 6.435e-86 Identity = 118/190 (62.11%), Postives = 145/190 (76.32%), Query Frame = 2 Query: 8 MILPSNS-SLIYPDNNPSTFVVEFENPVYLDGKWEVALMDFTFVYNHFPYCSNSCIQYKFKKSHKETKYLKXXXXXXXXXXXXSKYTPDVDVFMENYENLLIVCPHVPSKISFRDYEHASKFGLQNISITSESDHCIIKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMTINAS 574 MILPSNS LIYP+N S F V+ N VYLDG+WEVAL+DFTFVYN FPY SNSCI+Y+ KS E KYLKINN+N EI+N KYTPDVD+F+E YENL+IVC HVP K++F D +HA FGL++ SI E DHC IKLPKF ++ +EQ III+Y+ K+KF YFED+LF+ LSEL G+L++ N S Sbjct: 244 MILPSNSCPLIYPNNEASNFNVQV-NSVYLDGEWEVALIDFTFVYNPFPYYSNSCIRYESVKSGSEIKYLKINNQNHTYEIINPKYTPDVDMFIEKYENLVIVCSHVPFKVTFPDIQHAFSFGLKSTSIICEEDHCRIKLPKFTDDGVMEQFGIIISYEEKSKFEKYFEDNLFINTLSELQGHLLSFNPS 432 HSP 2 Score: 122.479 bits (306), Expect = 6.435e-86 Identity = 77/116 (66.38%), Postives = 98/116 (84.48%), Query Frame = 1 Query: 577 LKKSILEMKNQTFTYKDLVGVKIPKIIQIHQ-IFNYSNIIKPINVGNVTVPLLKSVWIKKHEQGEVVQLEMKXXXXXXXXXXXXXXXXXXVPDDSGKLIKFSKDIKTHLTLHFRKI 921 L KS L +K F+ K+++G KIPK++ HQ +F YSNII+PINVG+V VPLLKS+WIKK++QGE+VQLEMKNP+Y+ +S S+IN IE+N+ DDSGKLIKFSKD KTHL+LHFRKI Sbjct: 462 LAKS-LGLKLSIFSEKNILGTKIPKLLHHHQQMFIYSNIIEPINVGDVRVPLLKSIWIKKYDQGEIVQLEMKNPMYLPVSYSTINIIEINIRDDSGKLIKFSKDTKTHLSLHFRKI 576 HSP 3 Score: 107.457 bits (267), Expect = 4.087e-51 Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 2 Query: 935 DIVNFYRISQSGGDLPYFVSKQYGTGWLKTIGQFALPILKRLRNFGMKTTNDVINNN 1105 DIVNFY Q+GGDLPYFV KQYG+GWLKTIG+FALPILKR+ NFGMKT NDVINNN Sbjct: 860 DIVNFYSTHQNGGDLPYFVGKQYGSGWLKTIGRFALPILKRIGNFGMKTANDVINNN 916 HSP 4 Score: 75.485 bits (184), Expect = 4.087e-51 Identity = 49/159 (30.82%), Postives = 83/159 (52.20%), Query Frame = 2 Query: 86 VYLDGKWEVALMDFTFVYNHFPYCSNSCIQYKFKKSHKETKYLKXXXXXXXXXXXXSKYTPDVDVFMENYENLLIVCPHVPSKISFRDYEHASKFGLQNISITSESDHCIIKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMT 562 +YLDG+WEVAL +FTFVYN+FP+ +NSCI+Y H +Y N + ++ Y ++++N + L I C + P K++F E A+ G + I++P + + I + I Y ++T F+++LF+T S++ LM Sbjct: 576 IYLDGEWEVALTEFTFVYNNFPFYNNSCIKYTKSTLHNSYEYFYYIEGNYTISHNSTFYL----IYIDN-KILNINCKYFPFKVTFDSIEEANCLGFNKKEVDFNDKLNQIRIPN--KKTKFDTIRLTITYYYDVEYTETFKENLFITEFSQVTDQLMA 727 HSP 5 Score: 58.9214 bits (141), Expect = 4.087e-51 Identity = 46/94 (48.94%), Postives = 70/94 (74.47%), Query Frame = 1 Query: 592 LEMKNQTFTYKDLVGVKIPKIIQIH-QIFNYSNIIKPINVGNVTVPLLKSVWIKKHEQGEVVQLEMKXXXXXXXXXXXXXXXXXXVPDDSGKLI 870 L + ++++ K +VG +P I+Q + Q+ Y+NII+PI V ++VPLLK VWI+KH++ ++VQ KNP+Y+ +SSS INNIE+N+ DDSGK I Sbjct: 765 LGLIEESYSEKIIVGSSLPTIMQRNIQMMIYTNIIEPILVSELSVPLLKCVWIEKHKKDDLVQFNEKNPMYLPVSSSYINNIEINIRDDSGKYI 858
BLAST of SMED30028468 vs. Planmine SMEST
Match: SMESG000018599.1 (SMESG000018599.1) HSP 1 Score: 209.534 bits (532), Expect = 2.089e-85 Identity = 116/190 (61.05%), Postives = 142/190 (74.74%), Query Frame = 2 Query: 8 MILPSNSS-LIYPDNNPSTFVVEFENPVYLDGKWEVALMDFTFVYNHFPYCSNSCIQYKFKKSHKETKYLKXXXXXXXXXXXXSKYTPDVDVFMENYENLLIVCPHVPSKISFRDYEHASKFGLQNISITSESDHCIIKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMTINAS 574 MILPSNS LIYP+N S F V+ N VYLDG+WEVAL+DFTFVYN FPY SNSCI+Y+ KS E KYLKINN+N EI+N KYTPDVD+F+E YENL+IVCPHVP K++F D +HA FGL++ SI E D C IKLPKF ++ +EQ I INY+ K+ F Y ED+LF+ LSEL G+L++ N S Sbjct: 8 MILPSNSCPLIYPNNEASNFNVQV-NSVYLDGEWEVALIDFTFVYNPFPYYSNSCIRYESVKSGSEIKYLKINNQNHTYEIINPKYTPDVDMFIEKYENLVIVCPHVPFKVTFPDIQHAFSFGLKSTSIICEEDQCRIKLPKFTDDGVMEQFGININYEEKSIFEKYLEDNLFINTLSELQGHLLSFNPS 196 HSP 2 Score: 125.946 bits (315), Expect = 2.089e-85 Identity = 78/116 (67.24%), Postives = 99/116 (85.34%), Query Frame = 1 Query: 577 LKKSILEMKNQTFTYKDLVGVKIPKIIQIHQ-IFNYSNIIKPINVGNVTVPLLKSVWIKKHEQGEVVQLEMKXXXXXXXXXXXXXXXXXXVPDDSGKLIKFSKDIKTHLTLHFRKI 921 L KS LE+K F+ K+++G KIPK++ HQ +F YSNII+PINVG+V VPLLKS+WIKK++QGE+VQLEMKNP+Y+ +S S+IN IE+N+ DDSGKLIKFSKD KTHL+LHFRKI Sbjct: 226 LAKS-LELKLSNFSEKNILGTKIPKLLHHHQQMFIYSNIIEPINVGDVRVPLLKSIWIKKYDQGEIVQLEMKNPMYLPVSYSTINIIEINIRDDSGKLIKFSKDTKTHLSLHFRKI 340 HSP 3 Score: 79.337 bits (194), Expect = 1.139e-15 Identity = 51/159 (32.08%), Postives = 88/159 (55.35%), Query Frame = 2 Query: 86 VYLDGKWEVALMDFTFVYNHFPYCSNSCIQYKFKKSHKETKYLKXXXXXXXXXXXXSKYTPDVDVFMENYENLLIVCPHVPSKISFRDYEHASKFGLQNISITSESDHCIIKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMT 562 +YLDG+WEVAL +FTFVYN+FP+ +NSCI+Y H +Y N + ++ Y ++++N + L I C + P K++F E A+ G + + I++P + + + I + I+Y ++T F+++LF+T LS++ LMT Sbjct: 340 IYLDGEWEVALTEFTFVYNNFPFYNNSCIKYTKSTLHNSYEYFYYIEGNYTISHNSTFYL----IYIDN-KILNINCKYFPFKVTFDSIEEANCLGFNKKEVDFNYELNQIRIPN--KKSKFDTIRLTISYYYDVEYTETFKENLFITELSQVTDQLMT 491
BLAST of SMED30028468 vs. Planmine SMEST
Match: SMESG000069427.1 (SMESG000069427.1) HSP 1 Score: 211.846 bits (538), Expect = 2.926e-84 Identity = 117/190 (61.58%), Postives = 144/190 (75.79%), Query Frame = 2 Query: 8 MILPSNSS-LIYPDNNPSTFVVEFENPVYLDGKWEVALMDFTFVYNHFPYCSNSCIQYKFKKSHKETKYLKXXXXXXXXXXXXSKYTPDVDVFMENYENLLIVCPHVPSKISFRDYEHASKFGLQNISITSESDHCIIKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMTINAS 574 MILPSNS LIYP+N S F V+ N VYLDG+WEVAL+DFTFVYN FPY SNSCI+Y+ KS E KYLKINN+N EI+N KYTPDVD+F+E YENL+IVCPHVP K++F D +HA FGL++ SI E DHC IKLPKF ++ +EQ I I+Y+ K+ F YFED+LF+ LSEL G+L++ N S Sbjct: 207 MILPSNSCPLIYPNNEASNFNVQV-NSVYLDGEWEVALIDFTFVYNPFPYYSNSCIRYESVKSGSEIKYLKINNQNHTYEIINPKYTPDVDMFIEKYENLVIVCPHVPFKVTFPDIQHAFSFGLKSTSIICEEDHCRIKLPKFTDDGVMEQFGINISYEEKSIFEKYFEDNLFINTLSELQGHLLSFNPS 395 HSP 2 Score: 119.783 bits (299), Expect = 2.926e-84 Identity = 71/106 (66.98%), Postives = 91/106 (85.85%), Query Frame = 1 Query: 607 QTFTYKDLVGVKIPKIIQIHQ-IFNYSNIIKPINVGNVTVPLLKSVWIKKHEQGEVVQLEMKXXXXXXXXXXXXXXXXXXVPDDSGKLIKFSKDIKTHLTLHFRKI 921 ++ K++ G KIPK++ HQ +F YSNII+PINVG+V VPLLKS+WIKK++QGE+VQLEMKNP+Y+ +S S+IN IE+N+ DDSGKLIKFSKD KTHL+LHFRKI Sbjct: 434 SNYSEKNIFGTKIPKLLHHHQQMFIYSNIIEPINVGDVRVPLLKSIWIKKYDQGEIVQLEMKNPMYLPVSYSTINIIEINIRDDSGKLIKFSKDTKTHLSLHFRKI 539 HSP 3 Score: 102.834 bits (255), Expect = 7.747e-34 Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 2 Query: 935 DIVNFYRISQSGGDLPYFVSKQYGTGWLKTIGQFALPILKRLRNFGMKTTNDVINNN 1105 DIVNFY Q+GGDLPYFV KQYG+GWLKTIG+FALPILKR+ NFGMKT NDVINNN Sbjct: 823 DIVNFYSTHQNGGDLPYFVGKQYGSGWLKTIGRFALPILKRIGNFGMKTANDVINNN 879 HSP 4 Score: 60.077 bits (144), Expect = 7.747e-34 Identity = 46/89 (51.69%), Postives = 69/89 (77.53%), Query Frame = 1 Query: 607 QTFTYKDLVGVKIPKIIQIH-QIFNYSNIIKPINVGNVTVPLLKSVWIKKHEQGEVVQLEMKXXXXXXXXXXXXXXXXXXVPDDSGKLI 870 ++++ K +VG +P I+Q + Q+ Y+NII+PI VG ++VPLLK VWI+KH++ ++VQ KNP+Y+ +SSS INNIE+N+ DDSGK I Sbjct: 733 ESYSEKIIVGSSLPTIMQRNIQMMIYTNIIEPILVGELSVPLLKCVWIEKHKKDDLVQFIEKNPMYLPVSSSYINNIEINIRDDSGKYI 821 HSP 5 Score: 74.3294 bits (181), Expect = 4.071e-14 Identity = 50/159 (31.45%), Postives = 87/159 (54.72%), Query Frame = 2 Query: 86 VYLDGKWEVALMDFTFVYNHFPYCSNSCIQYKFKKSHKETKYLKXXXXXXXXXXXXSKYTPDVDVFMENYENLLIVCPHVPSKISFRDYEHASKFGLQNISITSESDHCIIKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMT 562 +YLDG+WEVAL +FTFVYN+FP+ +NS I+Y H +Y N + ++ Y ++++N + L I C + P K++F E A+ G + + I++P + + ++ I + I Y ++T F+++LF+T LS++ LMT Sbjct: 539 IYLDGEWEVALTEFTFVYNNFPFYNNSHIKYIKSTLHNSYEYFYYIEGNYTISHNSTFYL----IYIDN-KILNINCKYFPFKVTFDSIEEANCLGFNKKEVDFNDELNQIRIPN--KKSKLDTIRLTITYYYDVEYTETFKENLFITELSQVTDQLMT 690
BLAST of SMED30028468 vs. Planmine SMEST
Match: SMESG000072420.1 (SMESG000072420.1) HSP 1 Score: 211.846 bits (538), Expect = 3.285e-84 Identity = 117/190 (61.58%), Postives = 144/190 (75.79%), Query Frame = 2 Query: 8 MILPSNSS-LIYPDNNPSTFVVEFENPVYLDGKWEVALMDFTFVYNHFPYCSNSCIQYKFKKSHKETKYLKXXXXXXXXXXXXSKYTPDVDVFMENYENLLIVCPHVPSKISFRDYEHASKFGLQNISITSESDHCIIKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMTINAS 574 MILPSNS LIYP+N S F V+ N VYLDG+WEVAL+DFTFVYN FPY SNSCI+Y+ KS E KYLKINN+N EI+N KYTPDVD+F+E YENL+IVCPHVP K++F D +HA FGL++ SI E DHC IKLPKF ++ +EQ I I+Y+ K+ F YFED+LF+ LSEL G+L++ N S Sbjct: 324 MILPSNSCPLIYPNNEASNFNVQV-NSVYLDGEWEVALIDFTFVYNPFPYYSNSCIRYESVKSGSEIKYLKINNQNHTYEIINPKYTPDVDMFIEKYENLVIVCPHVPFKVTFPDIQHAFSFGLKSTSIICEEDHCRIKLPKFTDDGVMEQFGINISYEEKSIFEKYFEDNLFINTLSELQGHLLSFNPS 512 HSP 2 Score: 119.783 bits (299), Expect = 3.285e-84 Identity = 75/115 (65.22%), Postives = 96/115 (83.48%), Query Frame = 1 Query: 577 LKKSILEMKNQTFTYKDLVGVKIPKIIQIHQ-IFNYSNIIKPINVGNVTVPLLKSVWIKKHEQGEVVQLEMKXXXXXXXXXXXXXXXXXXVPDDSGKLIKFSKDIKTHLTLHFRK 918 L KS L +K ++ K++ G KIPK++ HQ +F YSNII+PINVG+V VPLLKS+WIKK++QGE+VQLEMKNP+Y+ +S S+IN IE+N+ DDSGKLIKFSKD KTHL+LHFRK Sbjct: 542 LAKS-LGLKLSNYSEKNIFGTKIPKLLHHHQQMFIYSNIIEPINVGDVRVPLLKSIWIKKYDQGEIVQLEMKNPMYLPVSYSTINIIEINIRDDSGKLIKFSKDTKTHLSLHFRK 655 HSP 3 Score: 77.0258 bits (188), Expect = 5.470e-32 Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 2 Query: 983 YFVSKQYGTGWLKTIGQFALPILKRLRNFGMKTTNDVINNN 1105 Y KQYG+GWLKTIG+FALPILKR+ NFGMKT NDVINNN Sbjct: 904 YIFGKQYGSGWLKTIGRFALPILKRIGNFGMKTANDVINNN 944 HSP 4 Score: 60.077 bits (144), Expect = 5.470e-32 Identity = 47/94 (50.00%), Postives = 71/94 (75.53%), Query Frame = 1 Query: 592 LEMKNQTFTYKDLVGVKIPKIIQIH-QIFNYSNIIKPINVGNVTVPLLKSVWIKKHEQGEVVQLEMKXXXXXXXXXXXXXXXXXXVPDDSGKLI 870 L + ++++ K +VG +P I+Q + Q+ Y+NII+PI VG ++VPLLK VWI+KH++ ++VQ KNP+Y+ +SSS INNIE+N+ DDSGK I Sbjct: 812 LGLIEESYSEKIIVGSSLPTIMQRNIQMMIYTNIIEPILVGELSVPLLKCVWIEKHKKDDLVQFIEKNPMYLPVSSSYINNIEINIRDDSGKYI 905 HSP 5 Score: 39.6614 bits (91), Expect = 5.470e-32 Identity = 24/87 (27.59%), Postives = 45/87 (51.72%), Query Frame = 2 Query: 302 LLIVCPHVPSKISFRDYEHASKFGLQNISITSESDHCIIKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMT 562 L I C + P K++F E A+ G + + I++P + + ++ I + I Y ++T F+++LF+T LS++ LMT Sbjct: 690 LNINCKYFPFKVTFDSIEEANCLGFNKKEVDFNDELNQIRIPN--KKSKLDTIRLTITYYYDVEYTETFKENLFITELSQVTDQLMT 774
BLAST of SMED30028468 vs. Planmine SMEST
Match: SMESG000052400.1 (SMESG000052400.1) HSP 1 Score: 211.46 bits (537), Expect = 1.180e-83 Identity = 117/190 (61.58%), Postives = 144/190 (75.79%), Query Frame = 2 Query: 8 MILPSNSS-LIYPDNNPSTFVVEFENPVYLDGKWEVALMDFTFVYNHFPYCSNSCIQYKFKKSHKETKYLKXXXXXXXXXXXXSKYTPDVDVFMENYENLLIVCPHVPSKISFRDYEHASKFGLQNISITSESDHCIIKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMTINAS 574 MILPSNS LIYP+N S F V+ N VYLDG+WEVAL+DFTFVYN FPY SNSCI+Y+ KS E KYLKINN+N EI+N KYTPDVD+F+E YENL+IVCPHVP K++F D +HA FGL++ SI E DHC IKLPKF ++ +EQ I I+Y+ K+ F YFED+LF+ LSEL G+L++ N S Sbjct: 324 MILPSNSCPLIYPNNEASNFNVQV-NSVYLDGEWEVALIDFTFVYNPFPYYSNSCIRYESVKSGSEIKYLKINNQNHTYEIINPKYTPDVDMFIEKYENLVIVCPHVPFKVTFPDIQHAFSFGLKSTSIICEEDHCRIKLPKFTDDGVMEQFGINISYEEKSIFEKYFEDNLFINTLSELQGHLLSFNPS 512 HSP 2 Score: 118.242 bits (295), Expect = 1.180e-83 Identity = 70/104 (67.31%), Postives = 90/104 (86.54%), Query Frame = 1 Query: 610 TFTYKDLVGVKIPKIIQIHQ-IFNYSNIIKPINVGNVTVPLLKSVWIKKHEQGEVVQLEMKXXXXXXXXXXXXXXXXXXVPDDSGKLIKFSKDIKTHLTLHFRK 918 ++ K++ G KIPK++ HQ +F YSNII+PINVG+V VPLLKS+WIKK++QGE+VQLEMKNP+Y+ +S S+IN IE+N+ DDSGKLIKFSKD KTHL+LHFRK Sbjct: 552 NYSEKNIFGTKIPKLLHHHQQMFIYSNIIEPINVGDVRVPLLKSIWIKKYDQGEIVQLEMKNPMYLPVSYSTINIIEINIRDDSGKLIKFSKDTKTHLSLHFRK 655 HSP 3 Score: 102.449 bits (254), Expect = 2.382e-36 Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 2 Query: 935 DIVNFYRISQSGGDLPYFVSKQYGTGWLKTIGQFALPILKRLRNFGMKTTNDVINNN 1105 DIVNFY Q+GGDLPYFV KQYG+GWLKTIG+FALPILKR+ NFGMKT NDVINNN Sbjct: 855 DIVNFYSTHQNGGDLPYFVGKQYGSGWLKTIGRFALPILKRIGNFGMKTANDVINNN 911 HSP 4 Score: 60.077 bits (144), Expect = 2.382e-36 Identity = 47/94 (50.00%), Postives = 71/94 (75.53%), Query Frame = 1 Query: 592 LEMKNQTFTYKDLVGVKIPKIIQIH-QIFNYSNIIKPINVGNVTVPLLKSVWIKKHEQGEVVQLEMKXXXXXXXXXXXXXXXXXXVPDDSGKLI 870 L + ++++ K +VG +P I+Q + Q+ Y+NII+PI VG ++VPLLK VWI+KH++ ++VQ KNP+Y+ +SSS INNIE+N+ DDSGK I Sbjct: 760 LGLIEESYSEKIIVGSSLPTIMQRNIQMMIYTNIIEPILVGELSVPLLKCVWIEKHKKDDLVQFIEKNPMYLPVSSSYINNIEINIRDDSGKYI 853 HSP 5 Score: 29.261 bits (64), Expect = 2.382e-36 Identity = 15/49 (30.61%), Postives = 30/49 (61.22%), Query Frame = 2 Query: 416 IKLPKFMENNAVEQIEIIINYDIKTKFTHYFEDDLFLTRLSELHGYLMT 562 I++P + + ++ I + I Y ++T F+++LF+T LS++ LMT Sbjct: 676 IRIPN--KKSKLDTIRLTITYYYDVEYTETFKENLFITELSQVTDQLMT 722 The following BLAST results are available for this feature:
BLAST of SMED30028468 vs. Ensembl Human
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Human e!99) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Celegans
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Celegan e!99) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Fly
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Drosophila e!99) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Zebrafish
Analysis Date: 2016-08-08 (Schmidtea mediterranea smed_20140614 BLASTX Zebrafish e!99) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Xenopus
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Xenopus e!99) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Mouse
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX Mouse e!99) Total hits: 0
BLAST of SMED30028468 vs. UniProt/SwissProt
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI UniProt) Total hits: 0
BLAST of SMED30028468 vs. TrEMBL
Analysis Date: 2020-05-01 (Schmidtea mediterranea smed_20140614 BLASTX EMBL-EBI TrEMBL) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Cavefish
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Cavefish e!99) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Sea Lamprey
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Sea Lamprey e!99) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Yeast
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Yeast e!Fungi46) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Nematostella
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Nematostella e!Metazoa46) Total hits: 0
BLAST of SMED30028468 vs. Ensembl Medaka
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Medaka e!99) Total hits: 0
BLAST of SMED30028468 vs. Planmine SMEST
Analysis Date: 2020-05-08 (Schmidtea mediterranea smed_20140614 BLASTX Planmine SMEST) Total hits: 5
Analyses
This transcript is derived from or has results from the following analyses Sequences
The following sequences are available for this feature:
transcript sequence >SMED30028468 ID=SMED30028468|Name=SMED30028468|organism=Schmidtea mediterranea sexual|type=transcript|length=1106bpback to top protein sequence of SMED30028468-orf-1 >SMED30028468-orf-1 ID=SMED30028468-orf-1|Name=SMED30028468-orf-1|organism=Schmidtea mediterranea sexual|type=polypeptide|length=111bp MKNQTFTYKDLVGVKIPKIIQIHQIFNYSNIIKPINVGNVTVPLLKSVWIback to top protein sequence of SMED30028468-orf-2 >SMED30028468-orf-2 ID=SMED30028468-orf-2|Name=SMED30028468-orf-2|organism=Schmidtea mediterranea sexual|type=polypeptide|length=193bp RSMILPSNSSLIYPDNNPSTFVVEFENPVYLDGKWEVALMDFTFVYNHFPback to top Annotated Terms
The following terms have been associated with this transcript:
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